RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CHCHD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063787

Ensembl transcript IDs: ENSMUST00000071215.5, ENSMUST00000224633.2, ENSMUST00000226072.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp TCTTGTGGGGAGATAAACTCTCGGACTGTCCCAGAGACTCCTGGATaGATCTCATCTTCCTGGCTTCCTGAGCCCTGGAAGAACAATCGA +
Preference number: 2 (lower is better)
Translates to: SCGEINSRTVPETPG*ISSSWLPEPWKNNR
Trigger: TCGATTGTTCTTCCAGGGCTCAGGAAGCCAGGAAGATGAGATCAATCCAGGAGTCTCTGGGACAGTCCGAGAGTTTATCTCCCCACAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226072.2
3UTR-3UTR GCA 90 bp TTTGCCTCATTTTACCCTTCAAAAACTCGTAGCAATGCAAATGCAAACCGCAAACCTGGATCTCTTTCCTaGACGCCTCGTCGCGGAATT +
Preference number: 2 (lower is better)
Translates to: FASFYPSKTRSNANANRKPGSLS*TPRRGI
Trigger: AATTCCGCGACGAGGCGTGCAGGAAAGAGATCCAGG...TTTGCGGTTTGCATTTGCATTGCTACGAGTTTTTGAAGGGTAAAATGAGGCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226072.2
3UTR-3UTR TCA 90 bp TTTGCCTCATTTTACCCTTCAAAAACTCGTAGCAATGCAAATGCAAACCGCAAAATCTTCCTGGCTTCCTaGGCCCTGGAAGAACAATCG +
Preference number: 2 (lower is better)
Translates to: FASFYPSKTRSNANANRKIFLAS*ALEEQS
Trigger: CGATTGTTCTTCCAGGGCTCAGGAAGCCAGGAAGAT...TTTGCGGTTTGCATTTGCATTGCTACGAGTTTTTGAAGGGTAAAATGAGGCAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000226072.2
3UTR-3UTR CAA 90 bp TTTGCCTCATTTTACCCTTCAAAAACTCGTAGCAATGCAAATGCAAACCGCAAACCAGAGACTCCTGGATaGATCTCATCTTCCTGGCTT +
Preference number: 3 (lower is better)
Translates to: FASFYPSKTRSNANANRKPETPG*ISSSWL
Trigger: AAGCCAGGAAGATGAGATCAATCCAGGAGTCTCTGG...TTTGCGGTTTGCATTTGCATTGCTACGAGTTTTTGAAGGGTAAAATGAGGCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226072.2
3UTR-3UTR CAA 90 bp TTTGCCTCATTTTACCCTTCAAAAACTCGTAGCAATGCAAATGCAAACCGCAAAAACAACTTGGTCATCTaGTGGGGAGATAAACTCTCG +
Preference number: 3 (lower is better)
Translates to: FASFYPSKTRSNANANRKNNLVI*WGDKLS
Trigger: CGAGAGTTTATCTCCCCACAAGATGACCAAGTTGTT...TTTGCGGTTTGCATTTGCATTGCTACGAGTTTTTGAAGGGTAAAATGAGGCAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000226072.2
3UTR CAA 72 bp GAGATAAACTCTCGGACTGTCCCAGAGACTCCTGGATaGATCTCATCTTCCTGGCTTCCTGAGCCCTGGAAG +
Preference number: 4 (lower is better)
Translates to: EINSRTVPETPG*ISSSWLPEPWK
Trigger: CTTCCAGGGCTCAGGAAGCCAGGAAGATGAGATCAATCCAGGAGTCTCTGGGACAGTCCGAGAGTTTATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226072.2
3UTR CAA 72 bp GATTTGTTGGGAAATCTCTGTAACAACTTGGTCATCTaGTGGGGAGATAAACTCTCGGACTGTCCCAGAGAC +
Preference number: 4 (lower is better)
Translates to: DLLGNLCNNLVI*WGDKLSDCPRD
Trigger: GTCTCTGGGACAGTCCGAGAGTTTATCTCCCCACAAGATGACCAAGTTGTTACAGAGATTTCCCAACAAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226072.2
CDS-3UTR TCA 90 bp TTTGCCTCATTTTACCCTTCAAAAACTCGTAGCAATGCAAATGCAAACCGCAAATCATCGACATCTCCGTaGTACAGGTTGCCTCTGGAG +
Preference number: 4 (lower is better)
Translates to: FASFYPSKTRSNANANRKSSTSP*YRLPLE
Trigger: CTCCAGAGGCAACCTGTATCACGGAGATGTCGATGA...TTTGCGGTTTGCATTTGCATTGCTACGAGTTTTTGAAGGGTAAAATGAGGCAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226072.2
CDS-3UTR GCA 90 bp TTTGCCTCATTTTACCCTTCAAAAACTCGTAGCAATGCAAATGCAAACCGCAAACTCCGTGATACAGGTTaGCTCTGGAGGGGAAGAACT +
Preference number: 4 (lower is better)
Translates to: FASFYPSKTRSNANANRKLRDTG*LWRGRT
Trigger: AGTTCTTCCCCTCCAGAGGCAACCTGTATCACGGAG...TTTGCGGTTTGCATTTGCATTGCTACGAGTTTTTGAAGGGTAAAATGAGGCAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000226072.2
CDS-3UTR TCA 90 bp TTTGCCTCATTTTACCCTTCAAAAACTCGTAGCAATGCAAATGCAAACCGCAAACAGAGACTCCTGGATTaGTCTCATCTTCCTGGCTTC +
Preference number: 4 (lower is better)
Translates to: FASFYPSKTRSNANANRKQRLLD*SHLPGF
Trigger: GAAGCCAGGAAGATGAGATCAATCCAGGAGTCTCTG...TTTGCGGTTTGCATTTGCATTGCTACGAGTTTTTGAAGGGTAAAATGAGGCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071215.5
ENSMUST00000224633.2
CDS-3UTR CCA 90 bp TTTGCCTCATTTTACCCTTCAAAAACTCGTAGCAATGCAAATGCAAACCGCAAACAATCGAAGAAGTCCTaGATCTCTTTCCTGCACGCC +
Preference number: 4 (lower is better)
Translates to: FASFYPSKTRSNANANRKQSKKS*ISFLHA
Trigger: GGCGTGCAGGAAAGAGATCCAGGACTTCTTCGATTG...TTTGCGGTTTGCATTTGCATTGCTACGAGTTTTTGAAGGGTAAAATGAGGCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071215.5
ENSMUST00000224633.2
CDS-3UTR CCA 90 bp TTTGCCTCATTTTACCCTTCAAAAACTCGTAGCAATGCAAATGCAAACCGCAAAGATACAGGTTGCCTCTaGAGGGGAAGAACTCCCTTT +
Preference number: 4 (lower is better)
Translates to: FASFYPSKTRSNANANRKDTGCL*RGRTPF
Trigger: AAAGGGAGTTCTTCCCCTCCAGAGGCAACCTGTATC...TTTGCGGTTTGCATTTGCATTGCTACGAGTTTTTGAAGGGTAAAATGAGGCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000226072.2
CDS-3UTR TCA 90 bp CCAAACGTGCCTCTCTGTATAGCTTTTGGAAATGAGAGTTCATTGAAAATATTTATCTTCCTGGCTTCCTaGGCCCTGGAAGAACAATCG +
Preference number: 4 (lower is better)
Translates to: PNVPLCIAFGNESSLKIFIFLAS*ALEEQS
Trigger: CGATTGTTCTTCCAGGGCTCAGGAAGCCAGGAAGAT...AAATATTTTCAATGAACTCTCATTTCCAAAAGCTATACAGAGAGGCACGTTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071215.5
ENSMUST00000224633.2
CDS TCA 90 bp GGAATTCATTCTGCTTCCAGCAAGCCATCATCATCGACATCTCCGTaGTACAGGTTGCCTCTCCCTTTTCTCTACGTCGGTTCCCGACGC +
Preference number: 5 (lower is better)
Translates to: GIHSASSKPSSSTSP*YRLPLPFLYVGSRR
Trigger: GCGTCGGGAACCGACGTAGAGAAAAGGGAGAGGCAACCTGTATCACGGAGATGTCGATGATGATGGCTTGCTGGAAGCAGAATGAATTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071215.5
CDS-3UTR CAA 90 bp CCAAACGTGCCTCTCTGTATAGCTTTTGGAAATGAGAGTTCATTGAAAATATTTCCAGAGACTCCTGGATaGATCTCATCTTCCTGGCTT +
Preference number: 5 (lower is better)
Translates to: PNVPLCIAFGNESSLKIFPETPG*ISSSWL
Trigger: AAGCCAGGAAGATGAGATCAATCCAGGAGTCTCTGG...AAATATTTTCAATGAACTCTCATTTCCAAAAGCTATACAGAGAGGCACGTTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071215.5
ENSMUST00000224633.2
CDS-3UTR CAA 90 bp TTTGCCTCATTTTACCCTTCAAAAACTCGTAGCAATGCAAATGCAAACCGCAAAAATCTCTGTAACAACTaGGTCATCTTGTGGGGAGAT +
Preference number: 5 (lower is better)
Translates to: FASFYPSKTRSNANANRKNLCNN*VILWGD
Trigger: ATCTCCCCACAAGATGACCAAGTTGTTACAGAGATT...TTTGCGGTTTGCATTTGCATTGCTACGAGTTTTTGAAGGGTAAAATGAGGCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000071215.5
ENSMUST00000224633.2
CDS-3UTR CAA 90 bp CCAAACGTGCCTCTCTGTATAGCTTTTGGAAATGAGAGTTCATTGAAAATATTTAACAACTTGGTCATCTaGTGGGGAGATAAACTCTCG +
Preference number: 5 (lower is better)
Translates to: PNVPLCIAFGNESSLKIFNNLVI*WGDKLS
Trigger: CGAGAGTTTATCTCCCCACAAGATGACCAAGTTGTT...AAATATTTTCAATGAACTCTCATTTCCAAAAGCTATACAGAGAGGCACGTTTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071215.5
ENSMUST00000224633.2
CDS GCA 72 bp GCAAGCCATCATCATCGACATCTCCGTGATACAGGTTaGCTCTCCCTTTTCTCTACGTCGGTTCCCGACGCG +
Preference number: 6 (lower is better)
Translates to: ASHHHRHLRDTG*LSLFSTSVPDA
Trigger: CGCGTCGGGAACCGACGTAGAGAAAAGGGAGAGGCAACCTGTATCACGGAGATGTCGATGATGATGGCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071215.5