Pregenerated sensors for CHAF1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022945Ensembl transcript IDs: ENSMUST00000023666.11, ENSMUST00000117099.8, ENSMUST00000120586.2, ENSMUST00000142316.2, ENSMUST00000143006.2
Found 153 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCACCGCGAACACCATACGGTAGGGCAGGTTCACCAGCTCGGGGCTaGGCTCCTCTGATGCTTTCTCTGTTTCTGCCACTGGCCTCAATT | + |
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Preference number: 1 (lower is better) Translates to: PPRTPYGRAGSPARG*APLMLSLFLPLASI Trigger: AATTGAGGCCAGTGGCAGAAACAGAGAAAGCATCAGAGGAGCCCAGCCCCGAGCTGGTGAACCTGCCCTACCGTATGGTGTTCGCGGTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143006.2 |
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| 3UTR CCA 90 bp | GATGGGCGATTGGCCTTTTCAGGTGTTTTCTGGAGAACACATAAGTaGTGTTTGTCACATTCTCACCAGATTCCATACATCCGGCTGCAG | + |
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Preference number: 1 (lower is better) Translates to: DGRLAFSGVFWRTHK*CLSHSHQIPYIRLQ Trigger: CTGCAGCCGGATGTATGGAATCTGGTGAGAATGTGACAAACACCACTTATGTGTTCTCCAGAAAACACCTGAAAAGGCCAATCGCCCATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143006.2 |
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| 3UTR-3UTR CCA 90 bp | AGCCACCGCGAACACCATACGGTAGGGCAGGTTCACCAGCTCGGGGCTGGGCTCCTCTGTTTCTGCCACTaGCCTCAATTCAAAGTAGAC | + |
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Preference number: 2 (lower is better) Translates to: SHREHHTVGQVHQLGAGLLCFCH*PQFKVD Trigger: GTCTACTTTGAATTGAGGCCAGTGGCAGAAACAGAG...GAGCCCAGCCCCGAGCTGGTGAACCTGCCCTACCGTATGGTGTTCGCGGTGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143006.2 |
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| 3UTR-3UTR CCA 90 bp | CGGGGCTGGGCTCCTCTGATGCTTTCTCTGTTTCTGCCACTGGCCTCAATTCAATGGAGAACACATAAGTaGTGTTTGTCACATTCTCAC | + |
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Preference number: 2 (lower is better) Translates to: RGWAPLMLSLFLPLASIQWRTHK*CLSHSH Trigger: GTGAGAATGTGACAAACACCACTTATGTGTTCTCCA...TTGAATTGAGGCCAGTGGCAGAAACAGAGAAAGCATCAGAGGAGCCCAGCCCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143006.2 |
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| 3UTR CAA 90 bp | CGATTGGCCTTTTCAGGTGTTTTCTGGAGAACACATAAGTGGTGTTaGTCACATTCTCACCAGATTCCATACATCCGGCTGCAGGAGCTG | + |
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Preference number: 2 (lower is better) Translates to: RLAFSGVFWRTHKWC*SHSHQIPYIRLQEL Trigger: CAGCTCCTGCAGCCGGATGTATGGAATCTGGTGAGAATGTGACAAACACCACTTATGTGTTCTCCAGAAAACACCTGAAAAGGCCAATCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143006.2 |
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| 3UTR-3UTR CCA 90 bp | TCGGGGCTGGGCTCCTCTGATGCTTTCTCTGTTTCTGCCACTGGCCTCAATTCATTTTCAGGTGTTTTCTaGAGAACACATAAGTGGTGT | + |
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Preference number: 2 (lower is better) Translates to: SGLGSSDAFSVSATGLNSFSGVF*RTHKWC Trigger: ACACCACTTATGTGTTCTCCAGAAAACACCTGAAAA...TGAATTGAGGCCAGTGGCAGAAACAGAGAAAGCATCAGAGGAGCCCAGCCCCGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000143006.2 |
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| 3UTR TCA 72 bp | CACCAGATTCCATACATCCGGCTGCAGGAGCTGAAGTaGACAGAGCCGTCCCTGTGGTGCCATCACACCCCT | + |
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Preference number: 3 (lower is better) Translates to: HQIPYIRLQELK*TEPSLWCHHTP Trigger: AGGGGTGTGATGGCACCACAGGGACGGCTCTGTTCACTTCAGCTCCTGCAGCCGGATGTATGGAATCTGGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143006.2 |
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| 3UTR TCA 72 bp | GTAGGGCAGGTTCACCAGCTCGGGGCTGGGCTCCTCTaGTGCTTTCTCTGTTTCTGCCACTGGCCTCAATTC | + |
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Preference number: 3 (lower is better) Translates to: VGQVHQLGAGLL*CFLCFCHWPQF Trigger: GAATTGAGGCCAGTGGCAGAAACAGAGAAAGCATCAGAGGAGCCCAGCCCCGAGCTGGTGAACCTGCCCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143006.2 |
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| 3UTR CCA 72 bp | ACACCATACGGTAGGGCAGGTTCACCAGCTCGGGGCTaGGCTCCTCTGATGCTTTCTCTGTTTCTGCCACTG | + |
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Preference number: 3 (lower is better) Translates to: TPYGRAGSPARG*APLMLSLFLPL Trigger: CAGTGGCAGAAACAGAGAAAGCATCAGAGGAGCCCAGCCCCGAGCTGGTGAACCTGCCCTACCGTATGGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143006.2 |
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| 3UTR-3UTR CAA 90 bp | GTCATAGAGCAACACAGAGTCCTCGGAAGCCACCGCGAACACCATACGGTAGGGACGGAAGATGGGCGATaGGCCTTTTCAGGTGTTTTC | + |
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Preference number: 3 (lower is better) Translates to: VIEQHRVLGSHREHHTVGTEDGR*AFSGVF Trigger: GAAAACACCTGAAAAGGCCAATCGCCCATCTTCCGT...CCCTACCGTATGGTGTTCGCGGTGGCTTCCGAGGACTCTGTGTTGCTCTATGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143006.2 |
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| 3UTR TCA 72 bp | ATTCTCACCAGATTCCATACATCCGGCTGCAGGAGCTaGAGTGAACAGAGCCGTCCCTGTGGTGCCATCACA | + |
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Preference number: 3 (lower is better) Translates to: ILTRFHTSGCRS*SEQSRPCGAIT Trigger: TGTGATGGCACCACAGGGACGGCTCTGTTCACTTCAGCTCCTGCAGCCGGATGTATGGAATCTGGTGAGAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143006.2 |
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| CDS-3UTR TCA 90 bp | TCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGGCCAGCCGGGATGGCTaGGGGACTGTCCTTGATGGC | + |
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Preference number: 4 (lower is better) Translates to: SPAFELWPCLLCTQVHSRASRDG*GTVLDG Trigger: GCCATCAAGGACAGTCCCTCAGCCATCCCGGCTGGC...CCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CCA 90 bp | AGCCACCGCGAACACCATACGGTAGGGCAGGTTCACCAGCTCGGGGCTGGGCTCGCCGTCAGGCACACCTaGAGTGAGGAGCAAAGATCC | + |
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Preference number: 4 (lower is better) Translates to: SHREHHTVGQVHQLGAGLAVRHT*SEEQRS Trigger: GGATCTTTGCTCCTCACTCCAGGTGTGCCTGACGGC...GAGCCCAGCCCCGAGCTGGTGAACCTGCCCTACCGTATGGTGTTCGCGGTGGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143006.2 |
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| CDS-3UTR CCA 90 bp | TCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGCCAGGAGCCTCTGGCTaGACCTCTTCTGTGGAGGGG | + |
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Preference number: 4 (lower is better) Translates to: SPAFELWPCLLCTQVHSRPGASG*TSSVEG Trigger: CCCCTCCACAGAAGAGGTCCAGCCAGAGGCTCCTGG...CCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CCA 90 bp | CACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGCTCACCAGCTCGGGGCTaGGCTCCTCTGATGCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: HQPSSFGLASSARRCIAGSPARG*APLMLS Trigger: AGAAAGCATCAGAGGAGCCCAGCCCCGAGCTGGTGA...GCCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CCA 90 bp | CCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCGGGCGGTCCCGCTATTaGGCTGTGGATTTGGCACAG | + |
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Preference number: 4 (lower is better) Translates to: PSPAFELWPCLLCTQVHSGRSRY*AVDLAQ Trigger: CTGTGCCAAATCCACAGCCCAATAGCGGGACCGCCC...GCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR TCA 90 bp | GGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCTACATCCGGCTGGAGTaGGGAGCAAAGATCCATCTG | + |
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Preference number: 4 (lower is better) Translates to: GHHHQPSSFGLASSARRCYIRLE*GAKIHL Trigger: CAGATGGATCTTTGCTCCTCACTCCAGCCGGATGTA...GCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
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| CDS-3UTR TCA 90 bp | TCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGGGGGCTGGGCTCCTCTaGTGCTTTCTCTGTTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: SPAFELWPCLLCTQVHSRGAGLL*CFLCFC Trigger: GCAGAAACAGAGAAAGCATCAGAGGAGCCCAGCCCC...CCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGA 60% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR GCA 90 bp | CACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGCCATCCGGAAACTTCTTaGCTCTCCTTCAGGCCCCTG | + |
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Preference number: 4 (lower is better) Translates to: HQPSSFGLASSARRCIAGHPETS*LSFRPL Trigger: CAGGGGCCTGAAGGAGAGGCAAGAAGTTTCCGGATG...GCCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR GCA 90 bp | TCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGGGTCTTGGGTTCTGTTaGTGGGGGTCCCTTCGACTG | + |
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Preference number: 4 (lower is better) Translates to: SPAFELWPCLLCTQVHSRGLGFC*WGSLRL Trigger: CAGTCGAAGGGACCCCCAGCAACAGAACCCAAGACC...CCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CCA 90 bp | TTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTCATCCGTGGAGGAAATaGCCAAGAAGGCCCCATCGC | + |
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Preference number: 4 (lower is better) Translates to: LATITSLRALALPPLHAGHPWRK*PRRPHR Trigger: GCGATGGGGCCTTCTTGGCCATTTCCTCCACGGATG...ACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
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| CDS-3UTR TCA 90 bp | AGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGGCCAGCCGGGATGGCTaGGGGACTGTCCTTGATGGC | + |
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Preference number: 4 (lower is better) Translates to: SVYLATITSLRALALPPLASRDG*GTVLDG Trigger: GCCATCAAGGACAGTCCCTCAGCCATCCCGGCTGGC...CAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
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| CDS-3UTR GCA 90 bp | TCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGTTCCAGGTTGCCCCATaGTGGAAGTCCAGGCTGTAC | + |
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Preference number: 4 (lower is better) Translates to: SPAFELWPCLLCTQVHSRFQVAP*WKSRLY Trigger: GTACAGCCTGGACTTCCAGCATGGGGCAACCTGGAA...CCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR GCA 90 bp | CCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCGGGGCTTTCATGTTTTaGCCAGCAGGTTGCAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: PSPAFELWPCLLCTQVHSGAFMF*PAGCRV Trigger: GACCCTGCAACCTGCTGGGCAAAACATGAAAGCCCC...GCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CCA 90 bp | CACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATATCACCAGCTCGGGGCTaGGCTCCTCTGATGCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: HHHQPSSFGLASSARRCISPARG*APLMLS Trigger: AGAAAGCATCAGAGGAGCCCAGCCCCGAGCTGGTGA...TATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CCA 90 bp | CATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCACATCCGTGGAGGAAATaGCCAAGAAGGCCCCATCGC | + |
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Preference number: 4 (lower is better) Translates to: HHQPSSFGLASSARRCIAHPWRK*PRRPHR Trigger: GCGATGGGGCCTTCTTGGCCATTTCCTCCACGGATG...TGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CCA 90 bp | TCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGTGGTTGGTGAAGGAGTaGTACAGGGACTGCTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: SPAFELWPCLLCTQVHSRWLVKE*YRDCWG Trigger: ACCCCAGCAGTCCCTGTACCACTCCTTCACCAACCA...CCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CCA 90 bp | TCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGTCAGGGGCCAGGTTTTaGGCATCTCCTTCACGTTCC | + |
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Preference number: 4 (lower is better) Translates to: SPAFELWPCLLCTQVHSRSGARF*ASPSRS Trigger: GGAACGTGAAGGAGATGCCCAAAACCTGGCCCCTGA...CCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR GCA 90 bp | CATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGAGTGGTACAGGGACTaGTGGGGTCTTGGGTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: HHQPSSFGLASSARRCIAEWYRD*WGLGFC Trigger: ACAGAACCCAAGACCCCAGCAGTCCCTGTACCACTC...TGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CCA 90 bp | CACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGCAGAGAAATTCCACAATaGCTTTCCCATCTGGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: HQPSSFGLASSARRCIAGREIPQ*LSHLAP Trigger: GGGGGCCAGATGGGAAAGCCATTGTGGAATTTCTCT...GCCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CCA 90 bp | CCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGAAGGCCCCATCGCTaGACCAGGAAATGTCACTCA | + |
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Preference number: 4 (lower is better) Translates to: PSPAFELWPCLLCTQVHSRRPHR*TRKCHS Trigger: TGAGTGACATTTCCTGGTCCAGCGATGGGGCCTTCT...GCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CCA 90 bp | CACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGCGATCCCTGGTGTGTCTaGTTCTTGGCTTTCTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: HQPSSFGLASSARRCIAGDPWCV*FLAFLA Trigger: AGCCAAGAAAGCCAAGAACCAGACACACCAGGGATC...GCCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CCA 90 bp | TGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACCAGGAGCCTCTGGCTaGACCTCTTCTGTGGAGGGG | + |
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Preference number: 4 (lower is better) Translates to: CLFGHHHQPSSFGLASSAPGASG*TSSVEG Trigger: CCCCTCCACAGAAGAGGTCCAGCCAGAGGCTCCTGG...TGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
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| CDS-3UTR TCA 90 bp | CATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCATACATCCGGCTGGAGTaGGGAGCAAAGATCCATCTG | + |
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Preference number: 4 (lower is better) Translates to: HHQPSSFGLASSARRCIAYIRLE*GAKIHL Trigger: CAGATGGATCTTTGCTCCTCACTCCAGCCGGATGTA...TGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR GCA 90 bp | CATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAACTGGCTCCTTGTTGTaGCAGGCGATTTCACACGTG | + |
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Preference number: 4 (lower is better) Translates to: HHQPSSFGLASSARRCIATGSLL*QAISHV Trigger: CACGTGTGAAATCGCCTGGCACAACAAGGAGCCAGT...TGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR GCA 90 bp | TATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCACATCCGGAAACTTCTTaGCTCTCCTTCAGGCCCCTG | + |
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Preference number: 4 (lower is better) Translates to: YLATITSLRALALPPLHAHPETS*LSFRPL Trigger: CAGGGGCCTGAAGGAGAGGCAAGAAGTTTCCGGATG...TGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
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| CDS-3UTR GCA 90 bp | GCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCAGGAAGAACGACTTCATaGTGTCGTCGTGAAACATCC | + |
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Preference number: 4 (lower is better) Translates to: ATITSLRALALPPLHAGAGRTTS*CRRETS Trigger: GGATGTTTCACGACGACAGCATGAAGTCGTTCTTCC...TGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
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| CDS-3UTR CCA 90 bp | TCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGGGTTCTTGGCTTTCTTaGCTGTGTCGGGAGTCCTTA | + |
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Preference number: 4 (lower is better) Translates to: SPAFELWPCLLCTQVHSRGSWLS*LCRESL Trigger: TAAGGACTCCCGACACAGCCAAGAAAGCCAAGAACC...CCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CCA 90 bp | CATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGTGTGTCTGGTTCTTaGCTTTCTTGGCTGTGTCGG | + |
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Preference number: 4 (lower is better) Translates to: HHQPSSFGLASSARRCIAGVSGS*LSWLCR Trigger: CCGACACAGCCAAGAAAGCCAAGAACCAGACACACC...TGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CCA 90 bp | GAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGGGCGGTCCCGCTATTaGGCTGTGGATTTGGCACAG | + |
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Preference number: 4 (lower is better) Translates to: ECLFGHHHQPSSFGLASSGRSRY*AVDLAQ Trigger: CTGTGCCAAATCCACAGCCCAATAGCGGGACCGCCC...AGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
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| CDS-3UTR TCA 90 bp | CACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATATCTTCCACAACAGAATaGCGGCATCATCTCCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: HHHQPSSFGLASSARRCISSTTE*RHHLLQ Trigger: CTGGAGGAGATGATGCCGTCATTCTGTTGTGGAAGA...TATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR TCA 90 bp | CCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCCCAAAGGATCCCAGGTaGCTCCTTGCACATAACTTT | + |
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Preference number: 4 (lower is better) Translates to: PSPAFELWPCLLCTQVHSPKDPR*LLAHNF Trigger: AAAGTTATGTGCAAGGAGTCACCTGGGATCCTTTGG...GCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR TCA 90 bp | CACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAAGGGTCGCAATATATTaGCCCAAAGGATCCCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: HHHQPSSFGLASSARRCIRVAIY*PKGSQV Trigger: CACCTGGGATCCTTTGGGTCAATATATTGCGACCCT...TATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR TCA 90 bp | CACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGCTTCATGCTGTCGTCGTaGAACATCCGGAAACTTCTT | + |
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Preference number: 4 (lower is better) Translates to: HQPSSFGLASSARRCIAGFMLSS*NIRKLL Trigger: AAGAAGTTTCCGGATGTTTCACGACGACAGCATGAA...GCCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR GCA 90 bp | TATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAACTGGCTCCTTGTTGTaGCAGGCGATTTCACACGTG | + |
|
Preference number: 4 (lower is better) Translates to: YLATITSLRALALPPLHATGSLL*QAISHV Trigger: CACGTGTGAAATCGCCTGGCACAACAAGGAGCCAGT...TGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR GCA 90 bp | TCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGGGAAGAACGACTTCATaGTGTCGTCGTGAAACATCC | + |
|
Preference number: 4 (lower is better) Translates to: SPAFELWPCLLCTQVHSRGRTTS*CRRETS Trigger: GGATGTTTCACGACGACAGCATGAAGTCGTTCTTCC...CCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR GCA 90 bp | GTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGGGGCTTTCATGTTTTaGCCAGCAGGTTGCAGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: VYLATITSLRALALPPLHGAFMF*PAGCRV Trigger: GACCCTGCAACCTGCTGGGCAAAACATGAAAGCCCC...GTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CCA 90 bp | CACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATATTCCATACATCCGGCTaGAGTGAGGAGCAAAGATCC | + |
|
Preference number: 4 (lower is better) Translates to: HHHQPSSFGLASSARRCIFHTSG*SEEQRS Trigger: GGATCTTTGCTCCTCACTCCAGCCGGATGTATGGAA...TATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CCA 90 bp | TCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGCGGAAGATGGGCGATTaGCCTTTTCAGGTGTTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SPAFELWPCLLCTQVHSRRKMGD*PFQVFS Trigger: AGAAAACACCTGAAAAGGCCAATCGCCCATCTTCCG...CCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CCA 90 bp | CACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGCCTCTGTTTCTGCCACTaGCCTCAATTCAAAGTAGAC | + |
|
Preference number: 4 (lower is better) Translates to: HQPSSFGLASSARRCIAGLCFCH*PQFKVD Trigger: GTCTACTTTGAATTGAGGCCAGTGGCAGAAACAGAG...GCCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CCA 90 bp | CACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATATGCAATAGCCATCCGTaGAGGAAATGGCCAAGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: HHHQPSSFGLASSARRCICNSHP*RKWPRR Trigger: CCTTCTTGGCCATTTCCTCCACGGATGGCTATTGCA...TATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR TCA 90 bp | TCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGTCCAGAGAGCATCTTTaGAATGTTGAAAGCCACACG | + |
|
Preference number: 4 (lower is better) Translates to: SPAFELWPCLLCTQVHSRSREHL*NVESHT Trigger: CGTGTGGCTTTCAACATTTCAAAGATGCTCTCTGGA...CCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR GCA 90 bp | TGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCAGTGGATCTTCCAGGTTaGCCCATGCTGGAAGTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: CLFGHHHQPSSFGLASSAVDLPG*PMLEVQ Trigger: CTGGACTTCCAGCATGGGGCAACCTGGAAGATCCAC...TGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR GCA 90 bp | TCCATACATCCGGCTGCAGGAGCTGAAGTGAACAGAGCCGTCCCTGTGGTGCCAGGAAGAACGACTTCATaGTGTCGTCGTGAAACATCC | + |
|
Preference number: 4 (lower is better) Translates to: SIHPAAGAEVNRAVPVVPGRTTS*CRRETS Trigger: GGATGTTTCACGACGACAGCATGAAGTCGTTCTTCC...TGGCACCACAGGGACGGCTCTGTTCACTTCAGCTCCTGCAGCCGGATGTATGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143006.2 |
||
| CDS-3UTR CCA 90 bp | CCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCCTCTGTTTCTGCCACTaGCCTCAATTCAAAGTAGAC | + |
|
Preference number: 4 (lower is better) Translates to: PSPAFELWPCLLCTQVHSLCFCH*PQFKVD Trigger: GTCTACTTTGAATTGAGGCCAGTGGCAGAAACAGAG...GCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CCA 90 bp | GTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCAGAAGGCCCCATCGCTaGACCAGGAAATGTCACTCA | + |
|
Preference number: 4 (lower is better) Translates to: VFIWPPSPAFELWPCLLCRRPHR*TRKCHS Trigger: TGAGTGACATTTCCTGGTCCAGCGATGGGGCCTTCT...GCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CCA 90 bp | TTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGGGTGTGTCTGGTTCTTaGCTTTCTTGGCTGTGTCGG | + |
|
Preference number: 4 (lower is better) Translates to: FIWPPSPAFELWPCLLCTGVSGS*LSWLCR Trigger: CCGACACAGCCAAGAAAGCCAAGAACCAGACACACC...CGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR TCA 90 bp | CATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAAAAAGCGTACAACATTaGCAGCTTTGGTGTGTCGAG | + |
|
Preference number: 4 (lower is better) Translates to: HHQPSSFGLASSARRCIAKSVQH*QLWCVE Trigger: CTCGACACACCAAAGCTGTCAATGTTGTACGCTTTT...TGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR TCA 90 bp | GTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTCCTCCTCATCCTaGAAGGCGATCTGCTCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: VNQFMSVYLATITSLRALASSSS*KAICSG Trigger: GCCGGAGCAGATCGCCTTTCAGGATGAGGAGGAGGC...CAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR TCA 90 bp | CACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATATCCAGAGAGCATCTTTaGAATGTTGAAAGCCACACG | + |
|
Preference number: 4 (lower is better) Translates to: HHHQPSSFGLASSARRCISREHL*NVESHT Trigger: CGTGTGGCTTTCAACATTTCAAAGATGCTCTCTGGA...TATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CCA 90 bp | CACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGAGCAAAGATCCATCTaGAGTAAAGCTGAGTCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: HHHQPSSFGLASSARRCIEQRSI*SKAESS Trigger: CGAAGACTCAGCTTTACTCCAGATGGATCTTTGCTC...TATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CCA 90 bp | TCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGAGACACATAGCCAAATaGGAAAGACTGTTGAGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: SPAFELWPCLLCTQVHSRRHIAK*ERLLSV Trigger: GACACTCAACAGTCTTTCCCATTTGGCTATGTGTCT...CCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CCA 90 bp | TCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGTGGAGAACACATAAGTaGTGTTTGTCACATTCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: SPAFELWPCLLCTQVHSRWRTHK*CLSHSH Trigger: GTGAGAATGTGACAAACACCACTTATGTGTTCTCCA...CCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CCA 90 bp | CACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATACCTTATGCTCAGCACTaGCTTCTCTTTCAAAGGTAT | + |
|
Preference number: 4 (lower is better) Translates to: HHHQPSSFGLASSARRCIPYAQH*LLFQRY Trigger: ATACCTTTGAAAGAGAAGCCAGTGCTGAGCATAAGG...TATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR TCA 90 bp | GTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCTTCATGCTGTCGTCGTaGAACATCCGGAAACTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: VFIWPPSPAFELWPCLLCFMLSS*NIRKLL Trigger: AAGAAGTTTCCGGATGTTTCACGACGACAGCATGAA...GCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR GCA 90 bp | CACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGCAAAATGGAAATTTTCTaGCCTTTACTGACATCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: HQPSSFGLASSARRCIAGKMEIF*PLLTSH Trigger: ATGGGATGTCAGTAAAGGGCAGAAAATTTCCATTTT...GCCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR GCA 90 bp | CTATGTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCGGTCTTGGGTTCTGTTaGTGGGGGTCCCTTCGACTG | + |
|
Preference number: 4 (lower is better) Translates to: LCEPIHECLFGHHHQPSSGLGFC*WGSLRL Trigger: CAGTCGAAGGGACCCCCAGCAACAGAACCCAAGACC...GCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCACATAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CCA 90 bp | GTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGAGCAAAGATCCATCTaGAGTAAAGCTGAGTCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: VYLATITSLRALALPPLHEQRSI*SKAESS Trigger: CGAAGACTCAGCTTTACTCCAGATGGATCTTTGCTC...GTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CCA 90 bp | CATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCATGGAGAACACATAAGTaGTGTTTGTCACATTCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: HHQPSSFGLASSARRCIAWRTHK*CLSHSH Trigger: GTGAGAATGTGACAAACACCACTTATGTGTTCTCCA...TGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CCA 90 bp | CCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCTTTTCAGGTGTTTTCTaGAGAACACATAAGTGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: PSPAFELWPCLLCTQVHSFSGVF*RTHKWC Trigger: ACACCACTTATGTGTTCTCCAGAAAACACCTGAAAA...GCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CCA 90 bp | TATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAAGACACATAGCCAAATaGGAAAGACTGTTGAGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: YLATITSLRALALPPLHARHIAK*ERLLSV Trigger: GACACTCAACAGTCTTTCCCATTTGGCTATGTGTCT...TGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CCA 90 bp | TCCCAGGGCACGGAAGATGGGCGATTGGCCTTTTCAGGTGTTTTCTGGAGAACAGAGCAAAGATCCATCTaGAGTAAAGCTGAGTCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: SQGTEDGRLAFSGVFWRTEQRSI*SKAESS Trigger: CGAAGACTCAGCTTTACTCCAGATGGATCTTTGCTC...TGTTCTCCAGAAAACACCTGAAAAGGCCAATCGCCCATCTTCCGTGCCCTGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143006.2 |
||
| CDS-3UTR TCA 90 bp | AACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTCTTCCACAACAGAATaGCGGCATCATCTCCTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: NQFMSVYLATITSLRALASSTTE*RHHLLQ Trigger: CTGGAGGAGATGATGCCGTCATTCTGTTGTGGAAGA...GGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR GCA 90 bp | TGTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTTTCCAGGTTGCCCCATaGTGGAAGTCCAGGCTGTAC | + |
|
Preference number: 4 (lower is better) Translates to: CEPIHECLFGHHHQPSSFFQVAP*WKSRLY Trigger: GTACAGCCTGGACTTCCAGCATGGGGCAACCTGGAA...AAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CCA 90 bp | AACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTCCATACATCCGGCTaGAGTGAGGAGCAAAGATCC | + |
|
Preference number: 4 (lower is better) Translates to: NQFMSVYLATITSLRALAFHTSG*SEEQRS Trigger: GGATCTTTGCTCCTCACTCCAGCCGGATGTATGGAA...GGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CCA 90 bp | TGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACCTTATGCTCAGCACTaGCTTCTCTTTCAAAGGTAT | + |
|
Preference number: 4 (lower is better) Translates to: CLFGHHHQPSSFGLASSAPYAQH*LLFQRY Trigger: ATACCTTTGAAAGAGAAGCCAGTGCTGAGCATAAGG...TGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CCA 90 bp | AACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCGATCCCTGGTGTGTCTaGTTCTTGGCTTTCTTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: NQFMSVYLATITSLRALADPWCV*FLAFLA Trigger: AGCCAAGAAAGCCAAGAACCAGACACACCAGGGATC...GGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CCA 90 bp | TATGTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTGGTTGGTGAAGGAGTaGTACAGGGACTGCTGGGGT | + |
|
Preference number: 4 (lower is better) Translates to: YVNQFMSVYLATITSLRAWLVKE*YRDCWG Trigger: ACCCCAGCAGTCCCTGTACCACTCCTTCACCAACCA...AGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCACATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CCA 90 bp | TGTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTTCAGGGGCCAGGTTTTaGGCATCTCCTTCACGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: CEPIHECLFGHHHQPSSFSGARF*ASPSRS Trigger: GGAACGTGAAGGAGATGCCCAAAACCTGGCCCCTGA...AAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR TCA 90 bp | CTATGTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCAGGGTCGCAATATATTaGCCCAAAGGATCCCAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: LCEPIHECLFGHHHQPSSRVAIY*PKGSQV Trigger: CACCTGGGATCCTTTGGGTCAATATATTGCGACCCT...GCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCACATAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CCA 90 bp | CTATGTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCAGAGAAATTCCACAATaGCTTTCCCATCTGGCCCCC | + |
|
Preference number: 4 (lower is better) Translates to: LCEPIHECLFGHHHQPSSREIPQ*LSHLAP Trigger: GGGGGCCAGATGGGAAAGCCATTGTGGAATTTCTCT...GCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCACATAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CCA 90 bp | TTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGTTTTCAGGTGTTTTCTaGAGAACACATAAGTGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: FIWPPSPAFELWPCLLCTFSGVF*RTHKWC Trigger: ACACCACTTATGTGTTCTCCAGAAAACACCTGAAAA...CGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CCA 90 bp | CTATGTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTGCAATAGCCATCCGTaGAGGAAATGGCCAAGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: LCEPIHECLFGHHHQPSSCNSHP*RKWPRR Trigger: CCTTCTTGGCCATTTCCTCCACGGATGGCTATTGCA...GCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCACATAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CCA 90 bp | GTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGGTTCTTGGCTTTCTTaGCTGTGTCGGGAGTCCTTA | + |
|
Preference number: 4 (lower is better) Translates to: VNQFMSVYLATITSLRALGSWLS*LCRESL Trigger: TAAGGACTCCCGACACAGCCAAGAAAGCCAAGAACC...CAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR TCA 90 bp | TTTTTCTATGTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTGGGGCTGGGCTCCTCTaGTGCTTTCTCTGTTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: FFYVNQFMSVYLATITSLGAGLL*CFLCFC Trigger: GCAGAAACAGAGAAAGCATCAGAGGAGCCCAGCCCC...AAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCACATAGAAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR TCA 90 bp | GTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGAAAAGCGTACAACATTaGCAGCTTTGGTGTGTCGAG | + |
|
Preference number: 4 (lower is better) Translates to: VNQFMSVYLATITSLRALKSVQH*QLWCVE Trigger: CTCGACACACCAAAGCTGTCAATGTTGTACGCTTTT...CAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR GCA 90 bp | TTTTTCTATGTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTGAGTGGTACAGGGACTaGTGGGGTCTTGGGTTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: FFYVNQFMSVYLATITSLEWYRD*WGLGFC Trigger: ACAGAACCCAAGACCCCAGCAGTCCCTGTACCACTC...AAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCACATAGAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CCA 90 bp | TGTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTCGGAAGATGGGCGATTaGCCTTTTCAGGTGTTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: CEPIHECLFGHHHQPSSFRKMGD*PFQVFS Trigger: AGAAAACACCTGAAAAGGCCAATCGCCCATCTTCCG...AAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR TCA 90 bp | TTTCTATGTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGCCAAAGGATCCCAGGTaGCTCCTTGCACATAACTTT | + |
|
Preference number: 4 (lower is better) Translates to: FLCEPIHECLFGHHHQPSPKDPR*LLAHNF Trigger: AAAGTTATGTGCAAGGAGTCACCTGGGATCCTTTGG...CGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCACATAGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| 3UTR CAA 72 bp | TTTTCAGGTGTTTTCTGGAGAACACATAAGTGGTGTTaGTCACATTCTCACCAGATTCCATACATCCGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: FSGVFWRTHKWC*SHSHQIPYIRL Trigger: CAGCCGGATGTATGGAATCTGGTGAGAATGTGACAAACACCACTTATGTGTTCTCCAGAAAACACCTGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143006.2 |
||
| CDS-3UTR GCA 90 bp | TTTCTATGTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAAAATGGAAATTTTCTaGCCTTTACTGACATCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: FLCEPIHECLFGHHHQPSKMEIF*PLLTSH Trigger: ATGGGATGTCAGTAAAGGGCAGAAAATTTCCATTTT...CGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCACATAGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS CCA 90 bp | GCTCCTCCGGTGGCTCCCCAGGAGCCTCTGGCTGGACCTCTTCTGTaGAGGGGGCGGTCCCGCTATTGGGCTGTGGATTTGGCACAGTGT | + |
|
Preference number: 5 (lower is better) Translates to: APPVAPQEPLAGPLL*RGRSRYWAVDLAQC Trigger: ACACTGTGCCAAATCCACAGCCCAATAGCGGGACCGCCCCCTCCACAGAAGAGGTCCAGCCAGAGGCTCCTGGGGAGCCACCGGAGGAGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS TCA 90 bp | GTGGCAAGGGGCTTTTGCCAGCCGGGATGGCTGAGGGACTGTCCTTaGTGGCCGACGGAGCTGGAGACTGTGTGGTTGGTGAAGGAGTGG | + |
|
Preference number: 5 (lower is better) Translates to: VARGFCQPGWLRDCP*WPTELETVWLVKEW Trigger: CCACTCCTTCACCAACCACACAGTCTCCAGCTCCGTCGGCCATCAAGGACAGTCCCTCAGCCATCCCGGCTGGCAAAAGCCCCTTGCCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | CCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCGGGACTGCTGGGGTCTaGGGTTCTGTTGCTGGGGGT | + |
|
Preference number: 5 (lower is better) Translates to: PSPAFELWPCLLCTQVHSGTAGV*GSVAGG Trigger: ACCCCCAGCAACAGAACCCAAGACCCCAGCAGTCCC...GCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | CACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATATGTGGCAAGGGGCTTTaGCCAGCCGGGATGGCTGAG | + |
|
Preference number: 5 (lower is better) Translates to: HHHQPSSFGLASSARRCICGKGL*PAGMAE Trigger: CTCAGCCATCCCGGCTGGCAAAAGCCCCTTGCCACA...TATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS CCA 90 bp | GAGCTGGAGACTGTGTGGTTGGTGAAGGAGTGGTACAGGGACTGCTaGGGTCTTGGGTTCTGTTGCTGGGGGTCCCTTCGACTGATCTGG | + |
|
Preference number: 5 (lower is better) Translates to: ELETVWLVKEWYRDC*GLGFCCWGSLRLIW Trigger: CCAGATCAGTCGAAGGGACCCCCAGCAACAGAACCCAAGACCCCAGCAGTCCCTGTACCACTCCTTCACCAACCACACAGTCTCCAGCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | CCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCTGTGGATCTTCCAGGTaGCCCCATGCTGGAAGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: PSPAFELWPCLLCTQVHSCGSSR*PHAGSP Trigger: TGGACTTCCAGCATGGGGCAACCTGGAAGATCCACA...GCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | CACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGCATCTGCTCCGGCTCCTaGCTGTCATTCATCTTCCAC | + |
|
Preference number: 5 (lower is better) Translates to: HQPSSFGLASSARRCIAGICSGS*LSFIFH Trigger: GTGGAAGATGAATGACAGCAAGGAGCCGGAGCAGAT...GCCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | TCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGACATCCGGAAACTTCTaGCCTCTCCTTCAGGCCCCT | + |
|
Preference number: 5 (lower is better) Translates to: SPAFELWPCLLCTQVHSRTSGNF*PLLQAP Trigger: AGGGGCCTGAAGGAGAGGCAAGAAGTTTCCGGATGT...CCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | GTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCGGGACTGCTGGGGTCTaGGGTTCTGTTGCTGGGGGT | + |
|
Preference number: 5 (lower is better) Translates to: VFIWPPSPAFELWPCLLCGTAGV*GSVAGG Trigger: ACCCCCAGCAACAGAACCCAAGACCCCAGCAGTCCC...GCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS CCA 90 bp | TTGCTGGGGGTCCCTTCGACTGATCTGGATCCCGGCGAAGATCCCTaGTGTGTCTGGTTCTTGGCTTTCTTGGCTGTGTCGGGAGTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: LLGVPSTDLDPGEDP*CVWFLAFLAVSGVL Trigger: AAGGACTCCCGACACAGCCAAGAAAGCCAAGAACCAGACACACCAGGGATCTTCGCCGGGATCCAGATCAGTCGAAGGGACCCCCAGCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | CATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCATGTGGATCTTCCAGGTaGCCCCATGCTGGAAGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: HHQPSSFGLASSARRCIACGSSR*PHAGSP Trigger: TGGACTTCCAGCATGGGGCAACCTGGAAGATCCACA...TGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | CACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGCCAGGGTCGCAATATATaGACCCAAAGGATCCCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: HQPSSFGLASSARRCIAGQGRNI*TQRIPG Trigger: ACCTGGGATCCTTTGGGTCAATATATTGCGACCCTG...GCCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | CCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCTGGTGTGTCTGGTTCTaGGCTTTCTTGGCTGTGTCG | + |
|
Preference number: 5 (lower is better) Translates to: PSPAFELWPCLLCTQVHSWCVWF*AFLAVS Trigger: CGACACAGCCAAGAAAGCCAAGAACCAGACACACCA...GCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS CCA 90 bp | CGACTGATCTGGATCCCGGCGAAGATCCCTGGTGTGTCTGGTTCTTaGCTTTCTTGGCTGTGTCGGGAGTCCTTATGCTCAGCACTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: RLIWIPAKIPGVSGS*LSWLCRESLCSALA Trigger: AGCCAGTGCTGAGCATAAGGACTCCCGACACAGCCAAGAAAGCCAAGAACCAGACACACCAGGGATCTTCGCCGGGATCCAGATCAGTCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS CCA 90 bp | GTCCCTTCGACTGATCTGGATCCCGGCGAAGATCCCTGGTGTGTCTaGTTCTTGGCTTTCTTGGCTGTGTCGGGAGTCCTTATGCTCAGC | + |
|
Preference number: 5 (lower is better) Translates to: VPSTDLDPGEDPWCV*FLAFLAVSGVLMLS Trigger: GCTGAGCATAAGGACTCCCGACACAGCCAAGAAAGCCAAGAACCAGACACACCAGGGATCTTCGCCGGGATCCAGATCAGTCGAAGGGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | CATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCACTGTACACTGGCTCCTaGTTGTGCCAGGCGATTTCA | + |
|
Preference number: 5 (lower is better) Translates to: HHQPSSFGLASSARRCIALYTGS*LCQAIS Trigger: TGAAATCGCCTGGCACAACAAGGAGCCAGTGTACAG...TGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | CCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCCAGGGTCGCAATATATaGACCCAAAGGATCCCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: PSPAFELWPCLLCTQVHSQGRNI*TQRIPG Trigger: ACCTGGGATCCTTTGGGTCAATATATTGCGACCCTG...GCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | CCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCACGGAAGATGGGCGATaGGCCTTTTCAGGTGTTTTC | + |
|
Preference number: 5 (lower is better) Translates to: PSPAFELWPCLLCTQVHSTEDGR*AFSGVF Trigger: GAAAACACCTGAAAAGGCCAATCGCCCATCTTCCGT...GCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CAA 90 bp | CACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATATGGTTCTTGGCTTTCTaGGCTGTGTCGGGAGTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: HHHQPSSFGLASSARRCIWFLAF*AVSGVL Trigger: AAGGACTCCCGACACAGCCAAGAAAGCCAAGAACCA...TATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | CATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGTTTTGCCCAGCAGGTaGCAGGGTCTTCTCTTCAGA | + |
|
Preference number: 5 (lower is better) Translates to: HHQPSSFGLASSARRCIAVLPSR*QGLLFR Trigger: TCTGAAGAGAAGACCCTGCAACCTGCTGGGCAAAAC...TGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CAA 90 bp | GGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCTATTGGGCTGTGGATTaGGCACAGTGTCTGTTTTCA | + |
|
Preference number: 5 (lower is better) Translates to: GHHHQPSSFGLASSARRCYWAVD*AQCLFS Trigger: TGAAAACAGACACTGTGCCAAATCCACAGCCCAATA...GCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
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| CDS-3UTR CAA 90 bp | CCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCACAACATTGACAGCTTaGGTGTGTCGAGCAAGATTG | + |
|
Preference number: 5 (lower is better) Translates to: PSPAFELWPCLLCTQVHSTTLTA*VCRARL Trigger: CAATCTTGCTCGACACACCAAAGCTGTCAATGTTGT...GCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CAA 90 bp | TCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGATCCCAGGTGACTCCTaGCACATAACTTTTATGCTC | + |
|
Preference number: 5 (lower is better) Translates to: SPAFELWPCLLCTQVHSRIPGDS*HITFML Trigger: GAGCATAAAAGTTATGTGCAAGGAGTCACCTGGGAT...CCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CAA 90 bp | TTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGGTTTTGCCCAGCAGGTaGCAGGGTCTTCTCTTCAGA | + |
|
Preference number: 5 (lower is better) Translates to: FIWPPSPAFELWPCLLCTVLPSR*QGLLFR Trigger: TCTGAAGAGAAGACCCTGCAACCTGCTGGGCAAAAC...CGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
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| CDS-3UTR CAA 90 bp | TCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGTATTGGGCTGTGGATTaGGCACAGTGTCTGTTTTCA | + |
|
Preference number: 5 (lower is better) Translates to: SPAFELWPCLLCTQVHSRYWAVD*AQCLFS Trigger: TGAAAACAGACACTGTGCCAAATCCACAGCCCAATA...CCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS CCA 90 bp | CTTTCTCGAAGGTCACAAATGTGCAATAGCCATCCGTGGAGGAAATaGCCAAGAAGGCCCCATCGCTGGACCAGGAAATGTCACTCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: LSRRSQMCNSHPWRK*PRRPHRWTRKCHSG Trigger: CCCTGAGTGACATTTCCTGGTCCAGCGATGGGGCCTTCTTGGCCATTTCCTCCACGGATGGCTATTGCACATTTGTGACCTTCGAGAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CAA 90 bp | CATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAACAACATTGACAGCTTaGGTGTGTCGAGCAAGATTG | + |
|
Preference number: 5 (lower is better) Translates to: HHQPSSFGLASSARRCIATTLTA*VCRARL Trigger: CAATCTTGCTCGACACACCAAAGCTGTCAATGTTGT...TGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS-3UTR CAA 90 bp | CACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAGGCACACATAAGTGGTGTTaGTCACATTCTCACCAGATT | + |
|
Preference number: 5 (lower is better) Translates to: HQPSSFGLASSARRCIAGTHKWC*SHSHQI Trigger: AATCTGGTGAGAATGTGACAAACACCACTTATGTGT...GCCTGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | GAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTTGGTTCTTGGCTTTCTaGGCTGTGTCGGGAGTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: ECLFGHHHQPSSFGLASSWFLAF*AVSGVL Trigger: AAGGACTCCCGACACAGCCAAGAAAGCCAAGAACCA...AGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CAA 90 bp | AGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGTGGTGTGTCTGGTTCTaGGCTTTCTTGGCTGTGTCG | + |
|
Preference number: 5 (lower is better) Translates to: SVYLATITSLRALALPPLWCVWF*AFLAVS Trigger: CGACACAGCCAAGAAAGCCAAGAACCAGACACACCA...CAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CAA 90 bp | TATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAATCCCAGGTGACTCCTaGCACATAACTTTTATGCTC | + |
|
Preference number: 5 (lower is better) Translates to: YLATITSLRALALPPLHAIPGDS*HITFML Trigger: GAGCATAAAAGTTATGTGCAAGGAGTCACCTGGGAT...TGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CAA 90 bp | ATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCACATCCGGAAACTTCTaGCCTCTCCTTCAGGCCCCT | + |
|
Preference number: 5 (lower is better) Translates to: IHECLFGHHHQPSSFGLATSGNF*PLLQAP Trigger: AGGGGCCTGAAGGAGAGGCAAGAAGTTTCCGGATGT...GGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CAA 90 bp | CATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAGGTGCATAGCAAAATGGGAAAGACTGTaGAGTGTCATAGAGCAACAC | + |
|
Preference number: 5 (lower is better) Translates to: HHQPSSFGLASSARRCIAKWERL*SVIEQH Trigger: GTGTTGCTCTATGACACTCAACAGTCTTTCCCATTT...TGCTATGCACCTGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS CCA 90 bp | CAAGTTCACCTTTCTCGAAGGTCACAAATGTGCAATAGCCATCCGTaGAGGAAATGGCCAAGAAGGCCCCATCGCTGGACCAGGAAATGT | + |
|
Preference number: 5 (lower is better) Translates to: QVHLSRRSQMCNSHP*RKWPRRPHRWTRKC Trigger: ACATTTCCTGGTCCAGCGATGGGGCCTTCTTGGCCATTTCCTCCACGGATGGCTATTGCACATTTGTGACCTTCGAGAAAGGTGAACTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | TTCTATGTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGATGTGGCAAGGGGCTTTaGCCAGCCGGGATGGCTGAG | + |
|
Preference number: 5 (lower is better) Translates to: FYVNQFMSVYLATITSLRCGKGL*PAGMAE Trigger: CTCAGCCATCCCGGCTGGCAAAAGCCCCTTGCCACA...TCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCACATAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS GCA 90 bp | GGTGTGTCTGGTTCTTGGCTTTCTTGGCTGTGTCGGGAGTCCTTATaGTCAGCACTGGCTTCTCTTTCAAAGGTATGCCAAGTTCACCTT | + |
|
Preference number: 5 (lower is better) Translates to: GVSGSWLSWLCRESL*SALASLSKVCQVHL Trigger: AAGGTGAACTTGGCATACCTTTGAAAGAGAAGCCAGTGCTGAGCATAAGGACTCCCGACACAGCCAAGAAAGCCAAGAACCAGACACACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | GAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCATCTGCTCCGGCTCCTaGCTGTCATTCATCTTCCAC | + |
|
Preference number: 5 (lower is better) Translates to: EPIHECLFGHHHQPSSFGICSGS*LSFIFH Trigger: GTGGAAGATGAATGACAGCAAGGAGCCGGAGCAGAT...GCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS-3UTR CAA 90 bp | TATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGCCTCCTCTGCACGCAACACATAAGTGGTGTTaGTCACATTCTCACCAGATT | + |
|
Preference number: 5 (lower is better) Translates to: YLATITSLRALALPPLHATHKWC*SHSHQI Trigger: AATCTGGTGAGAATGTGACAAACACCACTTATGTGT...TGCGTGCAGAGGAGGCAAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS CCA 90 bp | GTTCTTGGCTTTCTTGGCTGTGTCGGGAGTCCTTATGCTCAGCACTaGCTTCTCTTTCAAAGGTATGCCAAGTTCACCTTTCTCGAAGGT | + |
|
Preference number: 5 (lower is better) Translates to: VLGFLGCVGSPYAQH*LLFQRYAKFTFLEG Trigger: ACCTTCGAGAAAGGTGAACTTGGCATACCTTTGAAAGAGAAGCCAGTGCTGAGCATAAGGACTCCCGACACAGCCAAGAAAGCCAAGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | GAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCACGGAAGATGGGCGATaGGCCTTTTCAGGTGTTTTC | + |
|
Preference number: 5 (lower is better) Translates to: EPIHECLFGHHHQPSSFGTEDGR*AFSGVF Trigger: GAAAACACCTGAAAAGGCCAATCGCCCATCTTCCGT...GCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
||
| CDS CCA 90 bp | GATGGGCGATTGGCCTTTTCAGGTGTTTTCTGGAGAACACATAAGTaGTGTTTGTCACATTCTCACCAGATTCCATACATCCGGCTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: DGRLAFSGVFWRTHK*CLSHSHQIPYIRLE Trigger: CTCCAGCCGGATGTATGGAATCTGGTGAGAATGTGACAAACACCACTTATGTGTTCTCCAGAAAACACCTGAAAAGGCCAATCGCCCATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
||
| CDS-3UTR CAA 90 bp | TGTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTCTGTACACTGGCTCCTaGTTGTGCCAGGCGATTTCA | + |
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Preference number: 5 (lower is better) Translates to: CEPIHECLFGHHHQPSSFLYTGS*LCQAIS Trigger: TGAAATCGCCTGGCACAACAAGGAGCCAGTGTACAG...AAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
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| CDS-3UTR CAA 90 bp | CCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCTTTGGCCTTGTGTGTCGAGCAAGATaGGAGAGAAATTCCACAATG | + |
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Preference number: 5 (lower is better) Translates to: PIHECLFGHHHQPSSFGLVCRAR*ERNSTM Trigger: CATTGTGGAATTTCTCTCCAATCTTGCTCGACACAC...AAGGCCAAAGCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
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| CDS-3UTR CAA 90 bp | CTATGTGAACCAATTCATGAGTGTTTATTTGGCCACCATCACCAGCCTTCGAGCAAATGGGAAAGACTGTaGAGTGTCATAGAGCAACAC | + |
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Preference number: 5 (lower is better) Translates to: LCEPIHECLFGHHHQPSSKWERL*SVIEQH Trigger: GTGTTGCTCTATGACACTCAACAGTCTTTCCCATTT...GCTCGAAGGCTGGTGATGGTGGCCAAATAAACACTCATGAATTGGTTCACATAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023666.11 |
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| CDS TCA 72 bp | CTTTCCCATCTGGCCCCCTCTCCAACTTCCAGATCCTaGCGGCGGTGTCCACCCCCGCGGATGCCAGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: LSHLAPSPTSRS*RRCPPPRMPAC Trigger: ACAGGCTGGCATCCGCGGGGGTGGACACCGCCGTCAGGATCTGGAAGTTGGAGAGGGGGCCAGATGGGAAAG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 ENSMUST00000120586.2 ENSMUST00000142316.2 |
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| CDS GCA 72 bp | CTTCCAGATCCTGACGGCGGTGTCCACCCCCGCGGATaGCAGCCTGTGGATCTTCCAGGTTGCCCCATGCTG | + |
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Preference number: 6 (lower is better) Translates to: LPDPDGGVHPRG*QPVDLPGCPML Trigger: CAGCATGGGGCAACCTGGAAGATCCACAGGCTGGCATCCGCGGGGGTGGACACCGCCGTCAGGATCTGGAAG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 ENSMUST00000120586.2 ENSMUST00000142316.2 |
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| CDS CCA 72 bp | GTGGCTCCCCAGGAGCCTCTGGCTGGACCTCTTCTGTaGAGGGGGCGGTCCCGCTATTGGGCTGTGGATTTG | + |
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Preference number: 6 (lower is better) Translates to: VAPQEPLAGPLL*RGRSRYWAVDL Trigger: CAAATCCACAGCCCAATAGCGGGACCGCCCCCTCCACAGAAGAGGTCCAGCCAGAGGCTCCTGGGGAGCCAC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS CCA 72 bp | AAGCCTGGGTCTCTTCAGTTCAGGAGGCTCCTCCGGTaGCTCCCCAGGAGCCTCTGGCTGGACCTCTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: KPGSLQFRRLLR*LPRSLWLDLFC Trigger: ACAGAAGAGGTCCAGCCAGAGGCTCCTGGGGAGCCACCGGAGGAGCCTCCTGAACTGAAGAGACCCAGGCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS CAA 90 bp | TGTGGCAAGGGGCTTTTGCCAGCCGGGATGGCTGAGGGACTGTCCTaGATGGCCGACGGAGCTGGAGACTGTGTGGTTGGTGAAGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: CGKGLLPAGMAEGLS*MADGAGDCVVGEGV Trigger: CACTCCTTCACCAACCACACAGTCTCCAGCTCCGTCGGCCATCAAGGACAGTCCCTCAGCCATCCCGGCTGGCAAAAGCCCCTTGCCACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS TCA 72 bp | CTTGATGGCCGACGGAGCTGGAGACTGTGTGGTTGGTaGAGGAGTGGTACAGGGACTGCTGGGGTCTTGGGT | + |
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Preference number: 6 (lower is better) Translates to: LDGRRSWRLCGW*RSGTGTAGVLG Trigger: ACCCAAGACCCCAGCAGTCCCTGTACCACTCCTTCACCAACCACACAGTCTCCAGCTCCGTCGGCCATCAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS CCA 72 bp | CCAGGTTTTGGGCATCTCCTTCACGTTCCTCAAGCCTaGGTCTCTTCAGTTCAGGAGGCTCCTCCGGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: PGFGHLLHVPQA*VSSVQEAPPVA Trigger: AGCCACCGGAGGAGCCTCCTGAACTGAAGAGACCCAGGCTTGAGGAACGTGAAGGAGATGCCCAAAACCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS CAA 90 bp | TCGACTGATCTGGATCCCGGCGAAGATCCCTGGTGTGTCTGGTTCTaGGCTTTCTTGGCTGTGTCGGGAGTCCTTATGCTCAGCACTGGC | + |
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Preference number: 6 (lower is better) Translates to: STDLDPGEDPWCVWF*AFLAVSGVLMLSTG Trigger: GCCAGTGCTGAGCATAAGGACTCCCGACACAGCCAAGAAAGCCAAGAACCAGACACACCAGGGATCTTCGCCGGGATCCAGATCAGTCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS CCA 72 bp | GCTGGACCTCTTCTGTGGAGGGGGCGGTCCCGCTATTaGGCTGTGGATTTGGCACAGTGTCTGTTTTCAATG | + |
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Preference number: 6 (lower is better) Translates to: AGPLLWRGRSRY*AVDLAQCLFSM Trigger: CATTGAAAACAGACACTGTGCCAAATCCACAGCCCAATAGCGGGACCGCCCCCTCCACAGAAGAGGTCCAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS CAA 72 bp | CTGGATCCCGGCGAAGATCCCTGGTGTGTCTGGTTCTaGGCTTTCTTGGCTGTGTCGGGAGTCCTTATGCTC | + |
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Preference number: 6 (lower is better) Translates to: LDPGEDPWCVWF*AFLAVSGVLML Trigger: GAGCATAAGGACTCCCGACACAGCCAAGAAAGCCAAGAACCAGACACACCAGGGATCTTCGCCGGGATCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS CCA 72 bp | CTTTCTCGAAGGTCACAAATGTGCAATAGCCATCCGTaGAGGAAATGGCCAAGAAGGCCCCATCGCTGGACC | + |
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Preference number: 6 (lower is better) Translates to: LSRRSQMCNSHP*RKWPRRPHRWT Trigger: GGTCCAGCGATGGGGCCTTCTTGGCCATTTCCTCCACGGATGGCTATTGCACATTTGTGACCTTCGAGAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS CCA 72 bp | AGGTCACAAATGTGCAATAGCCATCCGTGGAGGAAATaGCCAAGAAGGCCCCATCGCTGGACCAGGAAATGT | + |
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Preference number: 6 (lower is better) Translates to: RSQMCNSHPWRK*PRRPHRWTRKC Trigger: ACATTTCCTGGTCCAGCGATGGGGCCTTCTTGGCCATTTCCTCCACGGATGGCTATTGCACATTTGTGACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS CAA 90 bp | GGAGAAAAGCGTACAACATTGACAGCTTTGGTGTGTCGAGCAAGATaGGAGAGAAATTCCACAATGGCTTTCCCATCTGGCCCCCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: GEKRTTLTALVCRAR*ERNSTMAFPSGPLS Trigger: GGAGAGGGGGCCAGATGGGAAAGCCATTGTGGAATTTCTCTCCAATCTTGCTCGACACACCAAAGCTGTCAATGTTGTACGCTTTTCTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 ENSMUST00000120586.2 ENSMUST00000142316.2 |
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| CDS CAA 72 bp | CTGTGGAGGGGGCGGTCCCGCTATTGGGCTGTGGATTaGGCACAGTGTCTGTTTTCAATGGTGTTAAATTTA | + |
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Preference number: 6 (lower is better) Translates to: LWRGRSRYWAVD*AQCLFSMVLNL Trigger: TAAATTTAACACCATTGAAAACAGACACTGTGCCAAATCCACAGCCCAATAGCGGGACCGCCCCCTCCACAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS CCA 72 bp | TTTCTTGGCTGTGTCGGGAGTCCTTATGCTCAGCACTaGCTTCTCTTTCAAAGGTATGCCAAGTTCACCTTT | + |
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Preference number: 6 (lower is better) Translates to: FLGCVGSPYAQH*LLFQRYAKFTF Trigger: AAAGGTGAACTTGGCATACCTTTGAAAGAGAAGCCAGTGCTGAGCATAAGGACTCCCGACACAGCCAAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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| CDS CAA 72 bp | CGTACAACATTGACAGCTTTGGTGTGTCGAGCAAGATaGGAGAGAAATTCCACAATGGCTTTCCCATCTGGC | + |
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Preference number: 6 (lower is better) Translates to: RTTLTALVCRAR*ERNSTMAFPSG Trigger: GCCAGATGGGAAAGCCATTGTGGAATTTCTCTCCAATCTTGCTCGACACACCAAAGCTGTCAATGTTGTACG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 ENSMUST00000120586.2 ENSMUST00000142316.2 |
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| CDS CAA 72 bp | TCCCCAGTTGGAGAAAAGCGTACAACATTGACAGCTTaGGTGTGTCGAGCAAGATTGGAGAGAAATTCCACA | + |
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Preference number: 6 (lower is better) Translates to: SPVGEKRTTLTA*VCRARLERNST Trigger: TGTGGAATTTCTCTCCAATCTTGCTCGACACACCAAAGCTGTCAATGTTGTACGCTTTTCTCCAACTGGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 ENSMUST00000120586.2 ENSMUST00000142316.2 |
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| CDS CCA 72 bp | CAGGGTATGGTAATGGATGTTAGACACATAGCCAAATaGGAAAGACTGTTGAGTGTCATAGAGCAACACAGA | + |
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Preference number: 6 (lower is better) Translates to: QGMVMDVRHIAK*ERLLSVIEQHR Trigger: TCTGTGTTGCTCTATGACACTCAACAGTCTTTCCCATTTGGCTATGTGTCTAACATCCATTACCATACCCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023666.11 ENSMUST00000117099.8 |
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