RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CHAC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027313

Ensembl transcript IDs: ENSMUST00000028780.4

Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGGATTCTGGTTACATACCAGAGGACTAGGGCAGAGCCACCGCACTaGAGGGCCCACATCCAGGGCAGGTCCCCCACCTGCCCTGCCCAC +
Preference number: 1 (lower is better)
Translates to: GILVTYQRTRAEPPH*RAHIQGRSPTCPAH
Trigger: GTGGGCAGGGCAGGTGGGGGACCTGCCCTGGATGTGGGCCCTGCAGTGCGGTGGCTCTGCCCTAGTCCTCTGGTATGTAACCAGAATCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR CCA 90 bp GGGGTAGTCTGGGTGGACAGAGGAGCAACGATCTTGGAGGGTCCCTaGGGCTACGGAGGCCTGGGTGGTGTGGAATTGGCAGCAGCAATG +
Preference number: 1 (lower is better)
Translates to: GVVWVDRGATILEGP*GYGGLGGVELAAAM
Trigger: CATTGCTGCTGCCAATTCCACACCACCCAGGCCTCCGTAGCCCCAGGGACCCTCCAAGATCGTTGCTCCTCTGTCCACCCAGACTACCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR CCA 90 bp AGGCCCGGAACATGGGCAGGTGATACTACCACGGCTGGGGTAGTCTaGGTGGACAGAGGAGCAACGATCTTGGAGGGTCCCTGGGGCTAC +
Preference number: 1 (lower is better)
Translates to: RPGTWAGDTTTAGVV*VDRGATILEGPWGY
Trigger: GTAGCCCCAGGGACCCTCCAAGATCGTTGCTCCTCTGTCCACCCAGACTACCCCAGCCGTGGTAGTATCACCTGCCCATGTTCCGGGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR CCA 90 bp CTTCGCCTCCTTCTCTGCTGTCCCTCATCCAGAAGGCCCGGAACATaGGCAGGTGATACTACCACGGCTGGGGTAGTCTGGGTGGACAGA +
Preference number: 1 (lower is better)
Translates to: LRLLLCCPSSRRPGT*AGDTTTAGVVWVDR
Trigger: TCTGTCCACCCAGACTACCCCAGCCGTGGTAGTATCACCTGCCCATGTTCCGGGCCTTCTGGATGAGGGACAGCAGAGAAGGAGGCGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR GCA 90 bp ACCGCACTGCAGGGCCCACATCCAGGGCAGGTCCCCCACCTGCCCTaGCCACCACACCAACATGGTGCAATAAATAAAGGTTCAAGTAGT +
Preference number: 1 (lower is better)
Translates to: TALQGPHPGQVPHLP*PPHQHGAINKGSSS
Trigger: ACTACTTGAACCTTTATTTATTGCACCATGTTGGTGTGGTGGGCAGGGCAGGTGGGGGACCTGCCCTGGATGTGGGCCCTGCAGTGCGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR GCA 90 bp GCAGACAGGCGGGGCATAAGACACAAAGCCCCTGGCCACCCAGCATaGCTTCTCAACTCTCTCTTGCTCCATCAAGTCTATCTCAAGTAC +
Preference number: 1 (lower is better)
Translates to: ADRRGIRHKAPGHPA*LLNSLLLHQVYLKY
Trigger: GTACTTGAGATAGACTTGATGGAGCAAGAGAGAGTTGAGAAGGCATGCTGGGTGGCCAGGGGCTTTGTGTCTTATGCCCCGCCTGTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR TCA 90 bp GCAGAGGTAATGAAAGACAGTTTATGGGTAACAGTATGGGTCAACTaGGAATGGACAAGGACTGTAGTGTTTTCCAGGAACAGACCAATG +
Preference number: 1 (lower is better)
Translates to: AEVMKDSLWVTVWVN*EWTRTVVFSRNRPM
Trigger: CATTGGTCTGTTCCTGGAAAACACTACAGTCCTTGTCCATTCTCAGTTGACCCATACTGTTACCCATAAACTGTCTTTCATTACCTCTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR-3UTR GCA 90 bp TTCGCCTCCTTCTCTGCTGTCCCTCATCCAGAAGGCCCGGAACATGGGCAGGTGGCAGAGCCACCGCACTaGAGGGCCCACATCCAGGGC +
Preference number: 2 (lower is better)
Translates to: FASFSAVPHPEGPEHGQVAEPPH*RAHIQG
Trigger: GCCCTGGATGTGGGCCCTGCAGTGCGGTGGCTCTGC...CACCTGCCCATGTTCCGGGCCTTCTGGATGAGGGACAGCAGAGAAGGAGGCGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR CAA 90 bp ACTACCACGGCTGGGGTAGTCTGGGTGGACAGAGGAGCAACGATCTaGGAGGGTCCCTGGGGCTACGGAGGCCTGGGTGGTGTGGAATTG +
Preference number: 2 (lower is better)
Translates to: TTTAGVVWVDRGATI*EGPWGYGGLGGVEL
Trigger: CAATTCCACACCACCCAGGCCTCCGTAGCCCCAGGGACCCTCCAAGATCGTTGCTCCTCTGTCCACCCAGACTACCCCAGCCGTGGTAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR-3UTR CCA 90 bp CTTGGAGGGTCCCTGGGGCTACGGAGGCCTGGGTGGTGTGGAATTGGCAGCAGCAAGACACAAAGCCCCTaGCCACCCAGCATGCCTTCT +
Preference number: 2 (lower is better)
Translates to: LGGSLGLRRPGWCGIGSSKTQSP*PPSMPS
Trigger: AGAAGGCATGCTGGGTGGCCAGGGGCTTTGTGTCTT...GCTGCTGCCAATTCCACACCACCCAGGCCTCCGTAGCCCCAGGGACCCTCCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR CAA 90 bp TCTGCCCCGGGCCCGTCAATGAAGAGGGATGCTGACCCTTGGCCCTaGAAGAGCTACTTCGCCTCCTTCTCTGCTGTCCCTCATCCAGAA +
Preference number: 2 (lower is better)
Translates to: SAPGPSMKRDADPWP*KSYFASFSAVPHPE
Trigger: TTCTGGATGAGGGACAGCAGAGAAGGAGGCGAAGTAGCTCTTCAAGGGCCAAGGGTCAGCATCCCTCTTCATTGACGGGCCCGGGGCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR-3UTR GCA 90 bp ACATGGGCAGGTGATACTACCACGGCTGGGGTAGTCTGGGTGGACAGAGGAGCACCTGGCCACCCAGCATaGCTTCTCAACTCTCTCTTG +
Preference number: 2 (lower is better)
Translates to: TWAGDTTTAGVVWVDRGAPGHPA*LLNSLL
Trigger: CAAGAGAGAGTTGAGAAGGCATGCTGGGTGGCCAGG...TGCTCCTCTGTCCACCCAGACTACCCCAGCCGTGGTAGTATCACCTGCCCATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR-3UTR GCA 90 bp TTATCCCTCACTTACCCAAGCCCTGTACAGAGACAAACCATATTCTGGCAGAGGGTCCCCCACCTGCCCTaGCCACCACACCAACATGGT +
Preference number: 2 (lower is better)
Translates to: LSLTYPSPVQRQTIFWQRVPHLP*PPHQHG
Trigger: ACCATGTTGGTGTGGTGGGCAGGGCAGGTGGGGGAC...CCTCTGCCAGAATATGGTTTGTCTCTGTACAGGGCTTGGGTAAGTGAGGGATAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR GCA 72 bp GTTACATACCAGAGGACTAGGGCAGAGCCACCGCACTaGAGGGCCCACATCCAGGGCAGGTCCCCCACCTGC +
Preference number: 3 (lower is better)
Translates to: VTYQRTRAEPPH*RAHIQGRSPTC
Trigger: GCAGGTGGGGGACCTGCCCTGGATGTGGGCCCTGCAGTGCGGTGGCTCTGCCCTAGTCCTCTGGTATGTAAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR GCA 72 bp GATGGGGGAGAGGCCCAGTCCCAGGAACTGTGTCTGTaGATAGGATCCGGCTCTGCCCCGGGCCCGTCAATG +
Preference number: 3 (lower is better)
Translates to: DGGEAQSQELCL*IGSGSAPGPSM
Trigger: CATTGACGGGCCCGGGGCAGAGCCGGATCCTATGCACAGACACAGTTCCTGGGACTGGGCCTCTCCCCCATC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR TCA 72 bp CGGCTCTGCCCCGGGCCCGTCAATGAAGAGGGATGCTaGCCCTTGGCCCTTGAAGAGCTACTTCGCCTCCTT +
Preference number: 3 (lower is better)
Translates to: RLCPGPVNEEGC*PLALEELLRLL
Trigger: AAGGAGGCGAAGTAGCTCTTCAAGGGCCAAGGGTCAGCATCCCTCTTCATTGACGGGCCCGGGGCAGAGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR CCA 72 bp TGGGTGGACAGAGGAGCAACGATCTTGGAGGGTCCCTaGGGCTACGGAGGCCTGGGTGGTGTGGAATTGGCA +
Preference number: 3 (lower is better)
Translates to: WVDRGATILEGP*GYGGLGGVELA
Trigger: TGCCAATTCCACACCACCCAGGCCTCCGTAGCCCCAGGGACCCTCCAAGATCGTTGCTCCTCTGTCCACCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR GCA 72 bp CCCTTGGCCCTTGAAGAGCTACTTCGCCTCCTTCTCTaGTGTCCCTCATCCAGAAGGCCCGGAACATGGGCA +
Preference number: 3 (lower is better)
Translates to: PLALEELLRLLL*CPSSRRPGTWA
Trigger: TGCCCATGTTCCGGGCCTTCTGGATGAGGGACAGCAGAGAAGGAGGCGAAGTAGCTCTTCAAGGGCCAAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR CCA 72 bp ACATGGGCAGGTGATACTACCACGGCTGGGGTAGTCTaGGTGGACAGAGGAGCAACGATCTTGGAGGGTCCC +
Preference number: 3 (lower is better)
Translates to: TWAGDTTTAGVV*VDRGATILEGP
Trigger: GGGACCCTCCAAGATCGTTGCTCCTCTGTCCACCCAGACTACCCCAGCCGTGGTAGTATCACCTGCCCATGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR CCA 72 bp CTTCTCTGCTGTCCCTCATCCAGAAGGCCCGGAACATaGGCAGGTGATACTACCACGGCTGGGGTAGTCTGG +
Preference number: 3 (lower is better)
Translates to: LLCCPSSRRPGT*AGDTTTAGVVW
Trigger: CCAGACTACCCCAGCCGTGGTAGTATCACCTGCCCATGTTCCGGGCCTTCTGGATGAGGGACAGCAGAGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR CCA 72 bp GCTAGCAGACAGGCGGGGCATAAGACACAAAGCCCCTaGCCACCCAGCATGCCTTCTCAACTCTCTCTTGCT +
Preference number: 3 (lower is better)
Translates to: ASRQAGHKTQSP*PPSMPSQLSLA
Trigger: AGCAAGAGAGAGTTGAGAAGGCATGCTGGGTGGCCAGGGGCTTTGTGTCTTATGCCCCGCCTGTCTGCTAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR-3UTR CAA 90 bp CCTCACTTACCCAAGCCCTGTACAGAGACAAACCATATTCTGGCAGAGGTAATGGCTGACCCTTGGCCCTaGAAGAGCTACTTCGCCTCC +
Preference number: 3 (lower is better)
Translates to: PHLPKPCTETNHILAEVMADPWP*KSYFAS
Trigger: GGAGGCGAAGTAGCTCTTCAAGGGCCAAGGGTCAGC...CATTACCTCTGCCAGAATATGGTTTGTCTCTGTACAGGGCTTGGGTAAGTGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR TCA 72 bp ATGAAAGACAGTTTATGGGTAACAGTATGGGTCAACTaGGAATGGACAAGGACTGTAGTGTTTTCCAGGAAC +
Preference number: 3 (lower is better)
Translates to: MKDSLWVTVWVN*EWTRTVVFSRN
Trigger: GTTCCTGGAAAACACTACAGTCCTTGTCCATTCTCAGTTGACCCATACTGTTACCCATAAACTGTCTTTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR CAA 72 bp GCTGGGGTAGTCTGGGTGGACAGAGGAGCAACGATCTaGGAGGGTCCCTGGGGCTACGGAGGCCTGGGTGGT +
Preference number: 4 (lower is better)
Translates to: AGVVWVDRGATI*EGPWGYGGLGG
Trigger: ACCACCCAGGCCTCCGTAGCCCCAGGGACCCTCCAAGATCGTTGCTCCTCTGTCCACCCAGACTACCCCAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS-3UTR TCA 90 bp TTACATACCAGAGGACTAGGGCAGAGCCACCGCACTGCAGGGCCCACATCCAGGTGCTCATCTTGTGCCTaGGGCCCACAGAGCTGCATG +
Preference number: 4 (lower is better)
Translates to: LHTRGLGQSHRTAGPTSRCSSCA*GPQSCM
Trigger: CATGCAGCTCTGTGGGCCTCAGGCACAAGATGAGCA...CCTGGATGTGGGCCCTGCAGTGCGGTGGCTCTGCCCTAGTCCTCTGGTATGTAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS-3UTR GCA 90 bp GTCCCAGGAACTGTGTCTGTGCATAGGATCCGGCTCTGCCCCGGGCCCGTCAATATGCCACACCCCAAGTaGAGCCCTCACGGTCTTCAA +
Preference number: 4 (lower is better)
Translates to: VPGTVSVHRIRLCPGPVNMPHPK*SPHGLQ
Trigger: TTGAAGACCGTGAGGGCTGCACTTGGGGTGTGGCAT...ATTGACGGGCCCGGGGCAGAGCCGGATCCTATGCACAGACACAGTTCCTGGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS-3UTR TCA 90 bp GTCCCAGGAACTGTGTCTGTGCATAGGATCCGGCTCTGCCCCGGGCCCGTCAATGCCCACAGAGCTGCATaGAGTCTGCCAAACGCAATA +
Preference number: 4 (lower is better)
Translates to: VPGTVSVHRIRLCPGPVNAHRAA*SLPNAI
Trigger: TATTGCGTTTGGCAGACTTCATGCAGCTCTGTGGGC...ATTGACGGGCCCGGGGCAGAGCCGGATCCTATGCACAGACACAGTTCCTGGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS-3UTR GCA 90 bp ACATGGGCAGGTGATACTACCACGGCTGGGGTAGTCTGGGTGGACAGAGGAGCACAGGCATCTTGTCGCTaGCCCTATGGAAGGTGTCTC +
Preference number: 4 (lower is better)
Translates to: TWAGDTTTAGVVWVDRGAQASCR*PYGRCL
Trigger: GAGACACCTTCCATAGGGGCAGCGACAAGATGCCTG...TGCTCCTCTGTCCACCCAGACTACCCCAGCCGTGGTAGTATCACCTGCCCATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS-3UTR TCA 90 bp TCCAGAAGGCCCGGAACATGGGCAGGTGATACTACCACGGCTGGGGTAGTCTGGAAGTACTCAAGGTTGTaGCCAGAGAAGCCTCGGCAA +
Preference number: 4 (lower is better)
Translates to: SRRPGTWAGDTTTAGVVWKYSRL*PEKPRQ
Trigger: TTGCCGAGGCTTCTCTGGTCACAACCTTGAGTACTT...CCAGACTACCCCAGCCGTGGTAGTATCACCTGCCCATGTTCCGGGCCTTCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
3UTR CAA 72 bp GCCCCTGGCCACCCAGCATGCCTTCTCAACTCTCTCTaGCTCCATCAAGTCTATCTCAAGTACTGCATACTG +
Preference number: 4 (lower is better)
Translates to: APGHPACLLNSL*LHQVYLKYCIL
Trigger: CAGTATGCAGTACTTGAGATAGACTTGATGGAGCAAGAGAGAGTTGAGAAGGCATGCTGGGTGGCCAGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS-3UTR GCA 90 bp GAACAGACCAATGGGTCTATAGGAAGTGATCCAGACAAACAAGCAGACAGACAACAGGTGCTCATCTTGTaGCTGAGGCCCACAGAGCTG +
Preference number: 4 (lower is better)
Translates to: EQTNGSIGSDPDKQADRQQVLIL*LRPTEL
Trigger: CAGCTCTGTGGGCCTCAGGCACAAGATGAGCACCTG...TTGTCTGTCTGCTTGTTTGTCTGGATCACTTCCTATAGACCCATTGGTCTGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS-3UTR CCA 90 bp TCAAGTCTATCTCAAGTACTGCATACTGATGTCCACCAGTACCACTCAGACACTTTGTCGCTGCCCCTATaGAAGGTGTCTCCCTGCCAG +
Preference number: 4 (lower is better)
Translates to: SSLSQVLHTDVHQYHSDTLSLPL*KVSPCQ
Trigger: CTGGCAGGGAGACACCTTCCATAGGGGCAGCGACAA...AGTGTCTGAGTGGTACTGGTGGACATCAGTATGCAGTACTTGAGATAGACTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS-3UTR TCA 90 bp TGTACAGAGACAAACCATATTCTGGCAGAGGTAATGAAAGACAGTTTATGGGTATGGTGCAGGGGACAGTaGAGGAGGCGGAGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: CTETNHILAEVMKDSLWVWCRGQ*RRRSAL
Trigger: CAGAGCACTCCGCCTCCTTCACTGTCCCCTGCACCA...TACCCATAAACTGTCTTTCATTACCTCTGCCAGAATATGGTTTGTCTCTGTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS-3UTR TCA 90 bp CATATTCTGGCAGAGGTAATGAAAGACAGTTTATGGGTAACAGTATGGGTCAACCATAGGCCAGTGCTGTaGGGGGTTGGTCAGGGGTGT +
Preference number: 4 (lower is better)
Translates to: HILAEVMKDSLWVTVWVNHRPVL*GVGQGC
Trigger: ACACCCCTGACCAACCCCTCACAGCACTGGCCTATG...GTTGACCCATACTGTTACCCATAAACTGTCTTTCATTACCTCTGCCAGAATATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS-3UTR GCA 90 bp TCTGGCAGAGGTAATGAAAGACAGTTTATGGGTAACAGTATGGGTCAACTGAGACCCTCGAACTTGGTATaGCACACCCCAAGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: SGRGNERQFMGNSMGQLRPSNLV*HTPSAA
Trigger: GGCTGCACTTGGGGTGTGGCATACCAAGTTCGAGGG...TCTCAGTTGACCCATACTGTTACCCATAAACTGTCTTTCATTACCTCTGCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS-3UTR CCA 90 bp TACAGAGACAAACCATATTCTGGCAGAGGTAATGAAAGACAGTTTATGGGTAACGTAGCCAGGGTTCTGTaGGGTGGCCACATAGGCCAG +
Preference number: 4 (lower is better)
Translates to: YRDKPYSGRGNERQFMGNVARVL*GGHIGQ
Trigger: CTGGCCTATGTGGCCACCCCACAGAACCCTGGCTAC...GTTACCCATAAACTGTCTTTCATTACCTCTGCCAGAATATGGTTTGTCTCTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS-3UTR CAA 90 bp GACAGAGGAGCAACGATCTTGGAGGGTCCCTGGGGCTACGGAGGCCTGGGTGGTTTCCAGGTGCTCATCTaGTGCCTGAGGCCCACAGAG +
Preference number: 5 (lower is better)
Translates to: DRGATILEGPWGYGGLGGFQVLI*CLRPTE
Trigger: CTCTGTGGGCCTCAGGCACAAGATGAGCACCTGGAA...ACCACCCAGGCCTCCGTAGCCCCAGGGACCCTCCAAGATCGTTGCTCCTCTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS GCA 90 bp CAGGTACTTCAGGGCCTCGTTCACCTGCTCCCCTCGAACTTGGTATaGCACACCCCAAGTGCAGCCCTCACGGTCTTCAAGGAGGGTCAC +
Preference number: 5 (lower is better)
Translates to: QVLQGLVHLLPSNLV*HTPSAALTVFKEGH
Trigger: GTGACCCTCCTTGAAGACCGTGAGGGCTGCACTTGGGGTGTGGCATACCAAGTTCGAGGGGAGCAGGTGAACGAGGCCCTGAAGTACCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS GCA 90 bp AGCACGGCTTCCCTCACATTCAGGTACTTCAGGGCCTCGTTCACCTaGTCCCCTCGAACTTGGTATGCCACACCCCAAGTGCAGCCCTCA +
Preference number: 5 (lower is better)
Translates to: STASLTFRYFRASFT*SPRTWYATPQVQPS
Trigger: TGAGGGCTGCACTTGGGGTGTGGCATACCAAGTTCGAGGGGAGCAGGTGAACGAGGCCCTGAAGTACCTGAATGTGAGGGAAGCCGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS CCA 90 bp CAGGTAGGTAAGAGCAGGGTAGCAGGGTTCCTACGGCGTCCACAATaGCTTCCAGGTGCTCATCTTGTGCCTGAGGCCCACAGAGCTGCA +
Preference number: 5 (lower is better)
Translates to: QVGKSRVAGFLRRPQ*LPGAHLVPEAHRAA
Trigger: TGCAGCTCTGTGGGCCTCAGGCACAAGATGAGCACCTGGAAGCCATTGTGGACGCCGTAGGAACCCTGCTACCCTGCTCTTACCTACCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS CCA 90 bp ACATTCAGGTACTTCAGGGCCTCGTTCACCTGCTCCCCTCGAACTTaGTATGCCACACCCCAAGTGCAGCCCTCACGGTCTTCAAGGAGG +
Preference number: 5 (lower is better)
Translates to: TFRYFRASFTCSPRT*YATPQVQPSRSSRR
Trigger: CCTCCTTGAAGACCGTGAGGGCTGCACTTGGGGTGTGGCATACCAAGTTCGAGGGGAGCAGGTGAACGAGGCCCTGAAGTACCTGAATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS-3UTR CAA 90 bp TCCAGAAGGCCCGGAACATGGGCAGGTGATACTACCACGGCTGGGGTAGTCTGGTTGGTCAGGGGTGTCTaGAGGATAAAAGGTGACTTC +
Preference number: 5 (lower is better)
Translates to: SRRPGTWAGDTTTAGVVWLVRGV*RIKGDF
Trigger: GAAGTCACCTTTTATCCTCAAGACACCCCTGACCAA...CCAGACTACCCCAGCCGTGGTAGTATCACCTGCCCATGTTCCGGGCCTTCTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS TCA 90 bp GTTCCTACGGCGTCCACAATGGCTTCCAGGTGCTCATCTTGTGCCTaGGGCCCACAGAGCTGCATGAAGTCTGCCAAACGCAATAAGTAC +
Preference number: 5 (lower is better)
Translates to: VPTASTMASRCSSCA*GPQSCMKSAKRNKY
Trigger: GTACTTATTGCGTTTGGCAGACTTCATGCAGCTCTGTGGGCCTCAGGCACAAGATGAGCACCTGGAAGCCATTGTGGACGCCGTAGGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS-3UTR CAA 90 bp TTATCCCTCACTTACCCAAGCCCTGTACAGAGACAAACCATATTCTGGCAGAGGCAGTGCTGTGAGGGGTaGGTCAGGGGTGTCTTGAGG +
Preference number: 5 (lower is better)
Translates to: LSLTYPSPVQRQTIFWQRQCCEG*VRGVLR
Trigger: CCTCAAGACACCCCTGACCAACCCCTCACAGCACTG...CCTCTGCCAGAATATGGTTTGTCTCTGTACAGGGCTTGGGTAAGTGAGGGATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS TCA 90 bp TGGCTTCCAGGTGCTCATCTTGTGCCTGAGGCCCACAGAGCTGCATaGAGTCTGCCAAACGCAATAAGTACTCAAGGTTGTGACCAGAGA +
Preference number: 5 (lower is better)
Translates to: WLPGAHLVPEAHRAA*SLPNAISTQGCDQR
Trigger: TCTCTGGTCACAACCTTGAGTACTTATTGCGTTTGGCAGACTTCATGCAGCTCTGTGGGCCTCAGGCACAAGATGAGCACCTGGAAGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS TCA 90 bp CAGAGCTGCATGAAGTCTGCCAAACGCAATAAGTACTCAAGGTTGTaGCCAGAGAAGCCTCGGCAAGCAAGGATCTGTGTGGCAATGACC +
Preference number: 5 (lower is better)
Translates to: QSCMKSAKRNKYSRL*PEKPRQARICVAMT
Trigger: GGTCATTGCCACACAGATCCTTGCTTGCCGAGGCTTCTCTGGTCACAACCTTGAGTACTTATTGCGTTTGGCAGACTTCATGCAGCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS-3UTR CAA 90 bp TCTGGCAGAGGTAATGAAAGACAGTTTATGGGTAACAGTATGGGTCAACTGAGAACTCGGCCAGGCATCTaGTCGCTGCCCCTATGGAAG +
Preference number: 5 (lower is better)
Translates to: SGRGNERQFMGNSMGQLRTRPGI*SLPLWK
Trigger: CTTCCATAGGGGCAGCGACAAGATGCCTGGCCGAGT...TCTCAGTTGACCCATACTGTTACCCATAAACTGTCTTTCATTACCTCTGCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS GCA 72 bp CAAGGAGGGTCACCACTCGGCCAGGCATCTTGTCGCTaGCCCTATGGAAGGTGTCTCCCTGCCAGAACCGTC +
Preference number: 6 (lower is better)
Translates to: QGGSPLGQASCR*PYGRCLPARTV
Trigger: GACGGTTCTGGCAGGGAGACACCTTCCATAGGGGCAGCGACAAGATGCCTGGCCGAGTGGTGACCCTCCTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS GCA 72 bp CAGGGCCTCGTTCACCTGCTCCCCTCGAACTTGGTATaGCACACCCCAAGTGCAGCCCTCACGGTCTTCAAG +
Preference number: 6 (lower is better)
Translates to: QGLVHLLPSNLV*HTPSAALTVFK
Trigger: CTTGAAGACCGTGAGGGCTGCACTTGGGGTGTGGCATACCAAGTTCGAGGGGAGCAGGTGAACGAGGCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS CCA 72 bp AAGAGCAGGGTAGCAGGGTTCCTACGGCGTCCACAATaGCTTCCAGGTGCTCATCTTGTGCCTGAGGCCCAC +
Preference number: 6 (lower is better)
Translates to: KSRVAGFLRRPQ*LPGAHLVPEAH
Trigger: GTGGGCCTCAGGCACAAGATGAGCACCTGGAAGCCATTGTGGACGCCGTAGGAACCCTGCTACCCTGCTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS CAA 90 bp CACATTCAGGTACTTCAGGGCCTCGTTCACCTGCTCCCCTCGAACTaGGTATGCCACACCCCAAGTGCAGCCCTCACGGTCTTCAAGGAG +
Preference number: 6 (lower is better)
Translates to: HIQVLQGLVHLLPSN*VCHTPSAALTVFKE
Trigger: CTCCTTGAAGACCGTGAGGGCTGCACTTGGGGTGTGGCATACCAAGTTCGAGGGGAGCAGGTGAACGAGGCCCTGAAGTACCTGAATGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS TCA 72 bp GCGTCCACAATGGCTTCCAGGTGCTCATCTTGTGCCTaGGGCCCACAGAGCTGCATGAAGTCTGCCAAACGC +
Preference number: 6 (lower is better)
Translates to: ASTMASRCSSCA*GPQSCMKSAKR
Trigger: GCGTTTGGCAGACTTCATGCAGCTCTGTGGGCCTCAGGCACAAGATGAGCACCTGGAAGCCATTGTGGACGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS CAA 72 bp TCCTACGGCGTCCACAATGGCTTCCAGGTGCTCATCTaGTGCCTGAGGCCCACAGAGCTGCATGAAGTCTGC +
Preference number: 6 (lower is better)
Translates to: SYGVHNGFQVLI*CLRPTELHEVC
Trigger: GCAGACTTCATGCAGCTCTGTGGGCCTCAGGCACAAGATGAGCACCTGGAAGCCATTGTGGACGCCGTAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS GCA 72 bp TCCCTCACATTCAGGTACTTCAGGGCCTCGTTCACCTaGTCCCCTCGAACTTGGTATGCCACACCCCAAGTG +
Preference number: 6 (lower is better)
Translates to: SLTFRYFRASFT*SPRTWYATPQV
Trigger: CACTTGGGGTGTGGCATACCAAGTTCGAGGGGAGCAGGTGAACGAGGCCCTGAAGTACCTGAATGTGAGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4
CDS TCA 72 bp ATGAAGTCTGCCAAACGCAATAAGTACTCAAGGTTGTaGCCAGAGAAGCCTCGGCAAGCAAGGATCTGTGTG +
Preference number: 6 (lower is better)
Translates to: MKSAKRNKYSRL*PEKPRQARICV
Trigger: CACACAGATCCTTGCTTGCCGAGGCTTCTCTGGTCACAACCTTGAGTACTTATTGCGTTTGGCAGACTTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028780.4