Pregenerated sensors for CH25H (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050370Ensembl transcript IDs: ENSMUST00000050562.6
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | ACCACGCTGAATGTCTACCTTGTGTCCTGGAGTCAATaGCACTGGGATAAGTTGAAATTTAACACCAAGACC | + |
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Preference number: 3 (lower is better) Translates to: TTLNVYLVSWSQ*HWDKLKFNTKT Trigger: GGTCTTGGTGTTAAATTTCAACTTATCCCAGTGTCATTGACTCCAGGACACAAGGTAGACATTCAGCGTGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR GCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTGGAGGAGCGCCGGGCTaGGCACCCAGTGCAGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVGGAPG*APSAAA Trigger: CGCTGCTGCACTGGGTGCGCAGCCCGGCGCTCCTCC...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR GCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTGGGCTGCGCACCCAGTaGAGCAGCGTCACCGGGAAC | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVGLRTQ*SSVTGN Trigger: GTTCCCGGTGACGCTGCTGCACTGGGTGCGCAGCCC...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR CCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTGGCTGCAGGAGCAGCTaGCTGGAACAGCCCAGGTCT | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVGCRSS*LEQPRS Trigger: AGACCTGGGCTGTTCCAGCCAGCTGCTCCTGCAGCC...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR CCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTAGCCAGGGCACCTTATaGTGCAGCAGGTGCCACGCG | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVSQGTL*CSRCHA Trigger: CGCGTGGCACCTGCTGCACCATAAGGTGCCCTGGCT...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR GCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTGCGCGGACCGCAGAGTaGCCAGCATTTTGTCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVARTAE*PAFCPS Trigger: ACTGGGACAAAATGCTGGGCACTCTGCGGTCCGCGC...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR CCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTGCAGGAGCAGCTGGCTaGAACAGCCCAGGTCTTGGA | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVAGAAG*NSPGLG Trigger: TCCAAGACCTGGGCTGTTCCAGCCAGCTGCTCCTGC...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR CCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTCCTCCCTTGTCCTTATaGTGTCCCAGAGGGGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVPPLSL*CPRGAA Trigger: TGCAGCCCCTCTGGGACACCATAAGGACAAGGGAGG...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR CCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTTGTAGCGTCGCAGGATaGGGACCCAGGGATACAGGA | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVCSVAG*GPRDTG Trigger: TCCTGTATCCCTGGGTCCCCATCCTGCGACGCTACA...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR TCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTGAGGACGAGTTCTGGTaGTGCACCTTGTGGAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVEDEFW*CTLWKV Trigger: CACCTTCCACAAGGTGCATCACCAGAACTCGTCCTC...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR TCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTAAGGGCACAAGTCTGTaGGTGGACCACGGGAAGTCA | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVKGTSL*VDHGKS Trigger: TGACTTCCCGTGGTCCACTCACAGACTTGTGCCCTT...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR GCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTTTATGGTGCAGCAGGTaGCACGCGAAGATCTCGGTG | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVLWCSR*HAKISV Trigger: CACCGAGATCTTCGCGTGGCACCTGCTGCACCATAA...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR CCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTCAGAAGCTCATGTATTaGGTCGCCAGCGCGAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVQKLMY*VASAKE Trigger: CTCCTTCGCGCTGGCGACCCAATACATGAGCTTCTG...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR CCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTGGTAAAGATGGTGAGTaGGTGACACCGAAGCACCGC | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVGKDGE*VTPKHR Trigger: GCGGTGCTTCGGTGTCACCCACTCACCATCTTTACC...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR CCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTGCACAAGTCTGTGAGTaGACCACGGGAAGTCATAGC | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVAQVCE*TTGSHS Trigger: GCTATGACTTCCCGTGGTCCACTCACAGACTTGTGC...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR TCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTTTTTGTCCCAGTGTGTaGAGTAAGGAGCAAAATTGC | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVFCPSV*SKEQNC Trigger: GCAATTTTGCTCCTTACTTCACACACTGGGACAAAA...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 38% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR CCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTGTCTGTTTCTTCTTCTaGATCAAGTGTACAGCGCAT | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVVCFFF*IKCTAH Trigger: ATGCGCTGTACACTTGATCCAGAAGAAGAAACAGAC...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| 3UTR CAA 72 bp | GCCCAGTTCCAGTGCGATTTCATACATAGGAAAGTCTaGGTTCTAGAAACAAATCATTTCAGAGATCATAAT | + |
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Preference number: 4 (lower is better) Translates to: AQFQCDFIHRKV*VLETNHFRDHN Trigger: ATTATGATCTCTGAAATGATTTGTTTCTAGAACCAAGACTTTCCTATGTATGAAATCGCACTGGAACTGGGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR TCA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTCAGATGTTAATCACGTaGAAGGTAAAGATGGTGAGT | + |
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Preference number: 4 (lower is better) Translates to: QAAETTLDFIAVCITLKVQMLIT*KVKMVS Trigger: ACTCACCATCTTTACCTTTCACGTGATTAACATCTG...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS CCA 90 bp | CTCTCTGGAGTTCACGCAGCGCTCACCGCAGGCGCAAAGGCTCTCTaGCAGGGGCGCGGACCGCAGAGTGCCCAGCATTTTGTCCCAGTG | + |
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Preference number: 5 (lower is better) Translates to: LSGVHAALTAGAKAL*QGRGPQSAQHFVPV Trigger: CACTGGGACAAAATGCTGGGCACTCTGCGGTCCGCGCCCCTGCCAGAGAGCCTTTGCGCCTGCGGTGAGCGCTGCGTGAACTCCAGAGAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS CCA 90 bp | GGTGAGCCACGCCCCCGTACCAGCCAAAGGGCACAAGTCTGTGAGTaGACCACGGGAAGTCATAGCCCGAGTGGTCCTCCACCGACAGCC | + |
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Preference number: 5 (lower is better) Translates to: GEPRPRTSQRAQVCE*TTGSHSPSGPPPTA Trigger: GGCTGTCGGTGGAGGACCACTCGGGCTATGACTTCCCGTGGTCCACTCACAGACTTGTGCCCTTTGGCTGGTACGGGGGCGTGGCTCACC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS CCA 90 bp | CCCTTGTCCTTATGGTGTCCCAGAGGGGCTGCAGGAGCAGCTGGCTaGAACAGCCCAGGTCTTGGAGCTCCGAACCGTTGTAGCAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: PLSLWCPRGAAGAAG*NSPGLGAPNRCSSP Trigger: TGGGCTGCTACAACGGTTCGGAGCTCCAAGACCTGGGCTGTTCCAGCCAGCTGCTCCTGCAGCCCCTCTGGGACACCATAAGGACAAGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS GCA 90 bp | TTGTGGAAGGTGCGGTACAGCCAGGGCACCTTATGGTGCAGCAGGTaGCACGCGAAGATCTCGGTGTCGAAGAGCAGCAGGCAGATCAGG | + |
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Preference number: 5 (lower is better) Translates to: LWKVRYSQGTLWCSR*HAKISVSKSSRQIR Trigger: CCTGATCTGCCTGCTGCTCTTCGACACCGAGATCTTCGCGTGGCACCTGCTGCACCATAAGGTGCCCTGGCTGTACCGCACCTTCCACAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS TCA 90 bp | AAGCTCATGTATTGGGTCGCCAGCGCGAAGGAGGACGAGTTCTGGTaGTGCACCTTGTGGAAGGTGCGGTACAGCCAGGGCACCTTATGG | + |
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Preference number: 5 (lower is better) Translates to: KLMYWVASAKEDEFW*CTLWKVRYSQGTLW Trigger: CCATAAGGTGCCCTGGCTGTACCGCACCTTCCACAAGGTGCATCACCAGAACTCGTCCTCCTTCGCGCTGGCGACCCAATACATGAGCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS-3UTR CAA 90 bp | CAGGCTGCAGAAACAACATTAGATTTTATAGCAGTGTGCATCACTTTAAAAGTTGGAACAGCCCAGGTCTaGGAGCTCCGAACCGTTGTA | + |
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Preference number: 5 (lower is better) Translates to: QAAETTLDFIAVCITLKVGTAQV*ELRTVV Trigger: TACAACGGTTCGGAGCTCCAAGACCTGGGCTGTTCC...AACTTTTAAAGTGATGCACACTGCTATAAAATCTAATGTTGTTTCTGCAGCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS GCA 72 bp | GCCTCCTGGGGGAGGAGCGCCGGGCTGCGCACCCAGTaGAGCAGCGTCACCGGGAACACGAACACCAGGTGC | + |
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Preference number: 6 (lower is better) Translates to: ASWGRSAGLRTQ*SSVTGNTNTRC Trigger: GCACCTGGTGTTCGTGTTCCCGGTGACGCTGCTGCACTGGGTGCGCAGCCCGGCGCTCCTCCCCCAGGAGGC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS CCA 72 bp | GTCCTTATGGTGTCCCAGAGGGGCTGCAGGAGCAGCTaGCTGGAACAGCCCAGGTCTTGGAGCTCCGAACCG | + |
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Preference number: 6 (lower is better) Translates to: VLMVSQRGCRSS*LEQPRSWSSEP Trigger: CGGTTCGGAGCTCCAAGACCTGGGCTGTTCCAGCCAGCTGCTCCTGCAGCCCCTCTGGGACACCATAAGGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS GCA 72 bp | GTGCGGTACAGCCAGGGCACCTTATGGTGCAGCAGGTaGCACGCGAAGATCTCGGTGTCGAAGAGCAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: VRYSQGTLWCSR*HAKISVSKSSR Trigger: CCTGCTGCTCTTCGACACCGAGATCTTCGCGTGGCACCTGCTGCACCATAAGGTGCCCTGGCTGTACCGCAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS CCA 72 bp | CGCCCCCGTACCAGCCAAAGGGCACAAGTCTGTGAGTaGACCACGGGAAGTCATAGCCCGAGTGGTCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: RPRTSQRAQVCE*TTGSHSPSGPP Trigger: TGGAGGACCACTCGGGCTATGACTTCCCGTGGTCCACTCACAGACTTGTGCCCTTTGGCTGGTACGGGGGCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS TCA 72 bp | TATTGGGTCGCCAGCGCGAAGGAGGACGAGTTCTGGTaGTGCACCTTGTGGAAGGTGCGGTACAGCCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: YWVASAKEDEFW*CTLWKVRYSQG Trigger: GCCCTGGCTGTACCGCACCTTCCACAAGGTGCATCACCAGAACTCGTCCTCCTTCGCGCTGGCGACCCAATA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS CCA 72 bp | ACCTTGTGGAAGGTGCGGTACAGCCAGGGCACCTTATaGTGCAGCAGGTGCCACGCGAAGATCTCGGTGTCG | + |
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Preference number: 6 (lower is better) Translates to: TLWKVRYSQGTL*CSRCHAKISVS Trigger: CGACACCGAGATCTTCGCGTGGCACCTGCTGCACCATAAGGTGCCCTGGCTGTACCGCACCTTCCACAAGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS CAA 90 bp | CACGTCGAAGAAGGTCAGCGAAAGCAGCTCCCAGAAGCTCATGTATaGGGTCGCCAGCGCGAAGGAGGACGAGTTCTGGTGATGCACCTT | + |
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Preference number: 6 (lower is better) Translates to: HVEEGQRKQLPEAHV*GRQREGGRVLVMHL Trigger: AAGGTGCATCACCAGAACTCGTCCTCCTTCGCGCTGGCGACCCAATACATGAGCTTCTGGGAGCTGCTTTCGCTGACCTTCTTCGACGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS CCA 72 bp | CCAGATGTTAATCACGTGAAAGGTAAAGATGGTGAGTaGGTGACACCGAAGCACCGCGACGTTCAGCACGTC | + |
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Preference number: 6 (lower is better) Translates to: PDVNHVKGKDGE*VTPKHRDVQHV Trigger: GACGTGCTGAACGTCGCGGTGCTTCGGTGTCACCCACTCACCATCTTTACCTTTCACGTGATTAACATCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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| CDS TCA 72 bp | GTAAGTGATGATAGAAAAGGTGACTGGGAAGATGGGTaGGCGCGTGAACGCCTCCCTTGTCCTTATGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: VSDDRKGDWEDG*ARERLPCPYGV Trigger: GACACCATAAGGACAAGGGAGGCGTTCACGCGCTCACCCATCTTCCCAGTCACCTTTTCTATCATCACTTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050562.6 |
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