Pregenerated sensors for CGRRF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055128Ensembl transcript IDs: ENSMUST00000068532.10, ENSMUST00000133989.8, ENSMUST00000140114.3, ENSMUST00000226861.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGTCAGACGACTATCCTCCAGGCAGTCTGTCCTCAAGGCCATGCCTaGTACAGAAAGCAAACCACAGAGAATGGGCGTCACCCAACCATC | + |
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Preference number: 1 (lower is better) Translates to: RQTTILQAVCPQGHA*YRKQTTENGRHPTI Trigger: GATGGTTGGGTGACGCCCATTCTCTGTGGTTTGCTTTCTGTAGCAGGCATGGCCTTGAGGACAGACTGCCTGGAGGATAGTCGTCTGACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR GCA 90 bp | AGCACGTCAGACGACTATCCTCCAGGCAGTCTGTCCTCAAGGCCATaGCTGCTACAGAAAGCAAACCACAGAGAATGGGCGTCACCCAAC | + |
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Preference number: 1 (lower is better) Translates to: STSDDYPPGSLSSRP*LLQKANHREWASPN Trigger: GTTGGGTGACGCCCATTCTCTGTGGTTTGCTTTCTGTAGCAGGCATGGCCTTGAGGACAGACTGCCTGGAGGATAGTCGTCTGACGTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR TCA 90 bp | AGTCACTGTACAGCGCCTCTTCTAACGCTTGCGGGGTGCTTATCCTaGAGCAGTAGGCGTGCTTCTGGAGAGCTTCGTAGAGCTTCTGCA | + |
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Preference number: 1 (lower is better) Translates to: SHCTAPLLTLAGCLS*SSRRASGELRRASA Trigger: TGCAGAAGCTCTACGAAGCTCTCCAGAAGCACGCCTACTGCTTCAGGATAAGCACCCCGCAAGCGTTAGAAGAGGCGCTGTACAGTGACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR CCA 90 bp | CTGTCCTCAAGGCCATGCCTGCTACAGAAAGCAAACCACAGAGAATaGGCGTCACCCAACCATCGGACAGTACAACAACAGGGTAAGAAG | + |
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Preference number: 1 (lower is better) Translates to: LSSRPCLLQKANHRE*ASPNHRTVQQQGKK Trigger: CTTCTTACCCTGTTGTTGTACTGTCCGATGGTTGGGTGACGCCCATTCTCTGTGGTTTGCTTTCTGTAGCAGGCATGGCCTTGAGGACAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR TCA 90 bp | TCACCCAACCATCGGACAGTACAACAACAGGGTAAGAAGCACGCATaGGCTTCAGTCTGGATGTTGCCCAAGCTCATGGCCCCTTTTAAA | + |
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Preference number: 1 (lower is better) Translates to: SPNHRTVQQQGKKHA*ASVWMLPKLMAPFK Trigger: TTTAAAAGGGGCCATGAGCTTGGGCAACATCCAGACTGAAGCTCATGCGTGCTTCTTACCCTGTTGTTGTACTGTCCGATGGTTGGGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR CCA 90 bp | ATAGATAAGCTTCCAGCAGTCACAGGCAGCATGCCGACTTCAGAATaGTTCACTGAAGTCACAGTGAATGTGACGGAGGAAGACCATCAG | + |
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Preference number: 1 (lower is better) Translates to: IDKLPAVTGSMPTSE*FTEVTVNVTEEDHQ Trigger: CTGATGGTCTTCCTCCGTCACATTCACTGTGACTTCAGTGAACCATTCTGAAGTCGGCATGCTGCCTGTGACTGCTGGAAGCTTATCTAT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR CCA 90 bp | CCTCATCAGCAAGGGTCAACAGAGCTACCAAAGGATAGCGAGATCTaGGCACTGGACCAAAGTCTTCAATTTCAGTATCACTTGGTAACT | + |
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Preference number: 1 (lower is better) Translates to: PHQQGSTELPKDSEI*ALDQSLQFQYHLVT Trigger: AGTTACCAAGTGATACTGAAATTGAAGACTTTGGTCCAGTGCCCAGATCTCGCTATCCTTTGGTAGCTCTGTTGACCCTTGCTGATGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR-3UTR GCA 90 bp | AGGCGTGCCGGCAGGGCAGGAGCACCCAGTTCACGCCCCCATTCTGGCACACCACTTCAGTCTGGATGTTaGCCAAGCTCATGGCCCCTT | + |
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Preference number: 2 (lower is better) Translates to: RRAGRAGAPSSRPHSGTPLQSGC*PSSWPL Trigger: AAGGGGCCATGAGCTTGGGCAACATCCAGACTGAAG...TGGTGTGCCAGAATGGGGGCGTGAACTGGGTGCTCCTGCCCTGCCGGCACGCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR-3UTR TCA 90 bp | CTGCACACTGCATCCCCAGTAGCACGTCAGACGACTATCCTCCAGGCAGTCTGTGGTAAGAAGCACGCATaGGCTTCAGTCTGGATGTTG | + |
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Preference number: 2 (lower is better) Translates to: LHTASPVARQTTILQAVCGKKHA*ASVWML Trigger: CAACATCCAGACTGAAGCTCATGCGTGCTTCTTACC...ACAGACTGCCTGGAGGATAGTCGTCTGACGTGCTACTGGGGATGCAGTGTGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR-3UTR TCA 90 bp | GCTACAGAAAGCAAACCACAGAGAATGGGCGTCACCCAACCATCGGACAGTACACCAGACCAATCTGGGTaGGGTCTCCATCAAAGAAAC | + |
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Preference number: 2 (lower is better) Translates to: ATESKPQRMGVTQPSDSTPDQSG*GLHQRN Trigger: GTTTCTTTGATGGAGACCTCACCCAGATTGGTCTGG...TGTACTGTCCGATGGTTGGGTGACGCCCATTCTCTGTGGTTTGCTTTCTGTAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR-3UTR TCA 90 bp | TCTGTCCTCAAGGCCATGCCTGCTACAGAAAGCAAACCACAGAGAATGGGCGTCTTCAGAATGGTTCACTaGAGTCACAGTGAATGTGAC | + |
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Preference number: 2 (lower is better) Translates to: SVLKAMPATESKPQRMGVFRMVH*SHSECD Trigger: GTCACATTCACTGTGACTTCAGTGAACCATTCTGAA...GACGCCCATTCTCTGTGGTTTGCTTTCTGTAGCAGGCATGGCCTTGAGGACAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR-3UTR TCA 90 bp | CATGGAAATAATATCATAAATTTCCCTGTCATCCTCATCAGCAAGGGTCAACAGGCGGGGTGCTTATCCTaGAGCAGTAGGCGTGCTTCT | + |
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Preference number: 2 (lower is better) Translates to: HGNNIINFPVILISKGQQAGCLS*SSRRAS Trigger: AGAAGCACGCCTACTGCTTCAGGATAAGCACCCCGC...CTGTTGACCCTTGCTGATGAGGATGACAGGGAAATTTATGATATTATTTCCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR-3UTR CCA 90 bp | AAATTTCCCTGTCATCCTCATCAGCAAGGGTCAACAGAGCTACCAAAGGATAGCATGCCGACTTCAGAATaGTTCACTGAAGTCACAGTG | + |
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Preference number: 2 (lower is better) Translates to: KFPCHPHQQGSTELPKDSMPTSE*FTEVTV Trigger: CACTGTGACTTCAGTGAACCATTCTGAAGTCGGCAT...GCTATCCTTTGGTAGCTCTGTTGACCCTTGCTGATGAGGATGACAGGGAAATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR CAA 90 bp | ATAGAACTCTCTCCGACAGTTAAGACTGTAGATTCTGTGTTAGGATaGCCTCTAAGGACACAAGGCTCTGCACCCTGTGTAGAAAGTACA | + |
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Preference number: 2 (lower is better) Translates to: IELSPTVKTVDSVLG*PLRTQGSAPCVEST Trigger: TGTACTTTCTACACAGGGTGCAGAGCCTTGTGTCCTTAGAGGCAATCCTAACACAGAATCTACAGTCTTAACTGTCGGAGAGAGTTCTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| 3UTR TCA 72 bp | ACAGCGCCTCTTCTAACGCTTGCGGGGTGCTTATCCTaGAGCAGTAGGCGTGCTTCTGGAGAGCTTCGTAGA | + |
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Preference number: 3 (lower is better) Translates to: TAPLLTLAGCLS*SSRRASGELRR Trigger: TCTACGAAGCTCTCCAGAAGCACGCCTACTGCTTCAGGATAAGCACCCCGCAAGCGTTAGAAGAGGCGCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR GCA 72 bp | CGTGCTTCTGGAGAGCTTCGTAGAGCTTCTGCACACTaGATCCCCAGTAGCACGTCAGACGACTATCCTCCA | + |
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Preference number: 3 (lower is better) Translates to: RASGELRRASAH*IPSSTSDDYPP Trigger: TGGAGGATAGTCGTCTGACGTGCTACTGGGGATGCAGTGTGCAGAAGCTCTACGAAGCTCTCCAGAAGCACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR TCA 72 bp | CATCGGACAGTACAACAACAGGGTAAGAAGCACGCATaGGCTTCAGTCTGGATGTTGCCCAAGCTCATGGCC | + |
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Preference number: 3 (lower is better) Translates to: HRTVQQQGKKHA*ASVWMLPKLMA Trigger: GGCCATGAGCTTGGGCAACATCCAGACTGAAGCTCATGCGTGCTTCTTACCCTGTTGTTGTACTGTCCGATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR CCA 72 bp | AGGCCATGCCTGCTACAGAAAGCAAACCACAGAGAATaGGCGTCACCCAACCATCGGACAGTACAACAACAG | + |
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Preference number: 3 (lower is better) Translates to: RPCLLQKANHRE*ASPNHRTVQQQ Trigger: CTGTTGTTGTACTGTCCGATGGTTGGGTGACGCCCATTCTCTGTGGTTTGCTTTCTGTAGCAGGCATGGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR TCA 72 bp | AGTCACAGGCAGCATGCCGACTTCAGAATGGTTCACTaGAGTCACAGTGAATGTGACGGAGGAAGACCATCA | + |
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Preference number: 3 (lower is better) Translates to: SHRQHADFRMVH*SHSECDGGRPS Trigger: TGATGGTCTTCCTCCGTCACATTCACTGTGACTTCAGTGAACCATTCTGAAGTCGGCATGCTGCCTGTGACT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| 3UTR CCA 72 bp | CAAGGGTCAACAGAGCTACCAAAGGATAGCGAGATCTaGGCACTGGACCAAAGTCTTCAATTTCAGTATCAC | + |
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Preference number: 3 (lower is better) Translates to: QGSTELPKDSEI*ALDQSLQFQYH Trigger: GTGATACTGAAATTGAAGACTTTGGTCCAGTGCCCAGATCTCGCTATCCTTTGGTAGCTCTGTTGACCCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| CDS-3UTR TCA 90 bp | AGGACACAAGGCTCTGCACCCTGTGTAGAAAGTACACTTTCCGGCTGTGATATCGCGGGGTGCTTATCCTaGAGCAGTAGGCGTGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: RTQGSAPCVESTLSGCDIAGCLS*SSRRAS Trigger: AGAAGCACGCCTACTGCTTCAGGATAAGCACCCCGC...GATATCACAGCCGGAAAGTGTACTTTCTACACAGGGTGCAGAGCCTTGTGTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| CDS-3UTR GCA 90 bp | GAACTCTCTCCGACAGTTAAGACTGTAGATTCTGTGTTAGGATTGCCTCTAAGGCCACGCAGTCCCTGCTaGTCTCCTCCACTGGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: ELSPTVKTVDSVLGLPLRPRSPC*SPPLGP Trigger: GGGACCCAGTGGAGGAGAGCAGCAGGGACTGCGTGG...CCTTAGAGGCAATCCTAACACAGAATCTACAGTCTTAACTGTCGGAGAGAGTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| CDS-3UTR TCA 90 bp | CTGCACACTGCATCCCCAGTAGCACGTCAGACGACTATCCTCCAGGCAGTCTGTGAACTGGGTTTCTTCTaGATTTCTCAGAATTACTGG | + |
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Preference number: 4 (lower is better) Translates to: LHTASPVARQTTILQAVCELGFF*ISQNYW Trigger: CCAGTAATTCTGAGAAATTCAGAAGAAACCCAGTTC...ACAGACTGCCTGGAGGATAGTCGTCTGACGTGCTACTGGGGATGCAGTGTGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| CDS-3UTR CCA 90 bp | TCTGTCCTCAAGGCCATGCCTGCTACAGAAAGCAAACCACAGAGAATGGGCGTCGCTCTTGTGCTGAACTaGGTTTCTTCTGAATTTCTC | + |
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Preference number: 4 (lower is better) Translates to: SVLKAMPATESKPQRMGVALVLN*VSSEFL Trigger: GAGAAATTCAGAAGAAACCCAGTTCAGCACAAGAGC...GACGCCCATTCTCTGTGGTTTGCTTTCTGTAGCAGGCATGGCCTTGAGGACAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| CDS-3UTR CCA 90 bp | TGTGTTAGGATTGCCTCTAAGGACACAAGGCTCTGCACCCTGTGTAGAAAGTACCACACTTCTGTCTTCTaGAGACTCGTCGTTAGAGGG | + |
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Preference number: 4 (lower is better) Translates to: CVRIASKDTRLCTLCRKYHTSVF*RLVVRG Trigger: CCCTCTAACGACGAGTCTCCAGAAGACAGAAGTGTG...GTACTTTCTACACAGGGTGCAGAGCCTTGTGTCCTTAGAGGCAATCCTAACACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| CDS-3UTR CCA 90 bp | TGTGTTAGGATTGCCTCTAAGGACACAAGGCTCTGCACCCTGTGTAGAAAGTACGCGAGATCTGGGCACTaGACCAAAGTCTTCAATTTC | + |
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Preference number: 4 (lower is better) Translates to: CVRIASKDTRLCTLCRKYARSGH*TKVFNF Trigger: GAAATTGAAGACTTTGGTCCAGTGCCCAGATCTCGC...GTACTTTCTACACAGGGTGCAGAGCCTTGTGTCCTTAGAGGCAATCCTAACACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| CDS-3UTR CCA 90 bp | TGTGTTAGGATTGCCTCTAAGGACACAAGGCTCTGCACCCTGTGTAGAAAGTACAAGGATAGCGAGATCTaGGCACTGGACCAAAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: CVRIASKDTRLCTLCRKYKDSEI*ALDQSL Trigger: AAGACTTTGGTCCAGTGCCCAGATCTCGCTATCCTT...GTACTTTCTACACAGGGTGCAGAGCCTTGTGTCCTTAGAGGCAATCCTAACACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| CDS-3UTR CCA 90 bp | AAAATAGAACTCTCTCCGACAGTTAAGACTGTAGATTCTGTGTTAGGATTGCCTTTCACGCCCCCATTCTaGCACACCACGCAGTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: KIELSPTVKTVDSVLGLPFTPPF*HTTQSL Trigger: CAGGGACTGCGTGGTGTGCCAGAATGGGGGCGTGAA...AGGCAATCCTAACACAGAATCTACAGTCTTAACTGTCGGAGAGAGTTCTATTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| CDS-3UTR GCA 90 bp | GAACTCTCTCCGACAGTTAAGACTGTAGATTCTGTGTTAGGATTGCCTCTAAGGAGTGCAAAGGATTCCTaGACAAACTGCCGGCACATG | + |
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Preference number: 4 (lower is better) Translates to: ELSPTVKTVDSVLGLPLRSAKDS*TNCRHM Trigger: CATGTGCCGGCAGTTTGTGCAGGAATCCTTTGCACT...CCTTAGAGGCAATCCTAACACAGAATCTACAGTCTTAACTGTCGGAGAGAGTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| CDS-3UTR GCA 90 bp | AAAATAGAACTCTCTCCGACAGTTAAGACTGTAGATTCTGTGTTAGGATTGCCTCTGTCCTCAAGGCCATaGCTGTTGCTAGGGAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: KIELSPTVKTVDSVLGLPLSSRP*LLLGKL Trigger: CAGCTTCCCTAGCAACAGGCATGGCCTTGAGGACAG...AGGCAATCCTAACACAGAATCTACAGTCTTAACTGTCGGAGAGAGTTCTATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| CDS-3UTR CCA 90 bp | TGTGTTAGGATTGCCTCTAAGGACACAAGGCTCTGCACCCTGTGTAGAAAGTACGCTCTTGTGCTGAACTaGGTTTCTTCTGAATTTCTC | + |
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Preference number: 4 (lower is better) Translates to: CVRIASKDTRLCTLCRKYALVLN*VSSEFL Trigger: GAGAAATTCAGAAGAAACCCAGTTCAGCACAAGAGC...GTACTTTCTACACAGGGTGCAGAGCCTTGTGTCCTTAGAGGCAATCCTAACACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| CDS-3UTR TCA 90 bp | TGTGTTAGGATTGCCTCTAAGGACACAAGGCTCTGCACCCTGTGTAGAAAGTACGAACTGGGTTTCTTCTaGATTTCTCAGAATTACTGG | + |
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Preference number: 4 (lower is better) Translates to: CVRIASKDTRLCTLCRKYELGFF*ISQNYW Trigger: CCAGTAATTCTGAGAAATTCAGAAGAAACCCAGTTC...GTACTTTCTACACAGGGTGCAGAGCCTTGTGTCCTTAGAGGCAATCCTAACACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| CDS-3UTR GCA 90 bp | TGTGTTAGGATTGCCTCTAAGGACACAAGGCTCTGCACCCTGTGTAGAAAGTACTTTCTGACCACAAAGTaGAAAGGATTCCTGCACAAA | + |
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Preference number: 4 (lower is better) Translates to: CVRIASKDTRLCTLCRKYFLTTK*KGFLHK Trigger: TTTGTGCAGGAATCCTTTGCACTTTGTGGTCAGAAA...GTACTTTCTACACAGGGTGCAGAGCCTTGTGTCCTTAGAGGCAATCCTAACACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| CDS-3UTR TCA 90 bp | AAAATAGAACTCTCTCCGACAGTTAAGACTGTAGATTCTGTGTTAGGATTGCCTTTGTCTGGCTCTTTCTaGCCACAAAGTGCAAAGGAT | + |
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Preference number: 4 (lower is better) Translates to: KIELSPTVKTVDSVLGLPLSGSF*PQSAKD Trigger: ATCCTTTGCACTTTGTGGTCAGAAAGAGCCAGACAA...AGGCAATCCTAACACAGAATCTACAGTCTTAACTGTCGGAGAGAGTTCTATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| CDS-3UTR GCA 90 bp | AAAATAGAACTCTCTCCGACAGTTAAGACTGTAGATTCTGTGTTAGGATTGCCTTTCTCCAACAAGCTCTaGTCCACACTTCTGTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: KIELSPTVKTVDSVLGLPFSNKL*STLLSS Trigger: AGAAGACAGAAGTGTGGAGCAGAGCTTGTTGGAGAA...AGGCAATCCTAACACAGAATCTACAGTCTTAACTGTCGGAGAGAGTTCTATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| CDS-3UTR CCA 90 bp | GAACTCTCTCCGACAGTTAAGACTGTAGATTCTGTGTTAGGATTGCCTCTAAGGATTTCTCAGAATTACTaGAACATCCCAACCAAACCA | + |
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Preference number: 4 (lower is better) Translates to: ELSPTVKTVDSVLGLPLRISQNY*NIPTKP Trigger: TGGTTTGGTTGGGATGTTCCAGTAATTCTGAGAAAT...CCTTAGAGGCAATCCTAACACAGAATCTACAGTCTTAACTGTCGGAGAGAGTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| 3UTR CAA 72 bp | TGGGCACTGGACCAAAGTCTTCAATTTCAGTATCACTaGGTAACTGGCAATATATTTCTTCTTTGCTGTGCT | + |
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Preference number: 4 (lower is better) Translates to: WALDQSLQFQYH*VTGNIFLLCCA Trigger: AGCACAGCAAAGAAGAAATATATTGCCAGTTACCAAGTGATACTGAAATTGAAGACTTTGGTCCAGTGCCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| CDS-3UTR TCA 90 bp | AAAATAGAACTCTCTCCGACAGTTAAGACTGTAGATTCTGTGTTAGGATTGCCTGCCAGGATTAAATATTaGTACAATATTCGGCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: KIELSPTVKTVDSVLGLPARIKY*YNIRQG Trigger: TCCCTGCCGAATATTGTATCAATATTTAATCCTGGC...AGGCAATCCTAACACAGAATCTACAGTCTTAACTGTCGGAGAGAGTTCTATTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| 3UTR CAA 72 bp | CCTTTTAAAAGTTGTTGTATATTTGCTGAGGCCAACTaGAGCTGTATTATGAATTCCAGACCAATCTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: PFKSCCIFAEAN*SCIMNSRPIWV Trigger: CACCCAGATTGGTCTGGAATTCATAATACAGCTCAAGTTGGCCTCAGCAAATATACAACAACTTTTAAAAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| CDS-3UTR TCA 90 bp | AAAATAGAACTCTCTCCGACAGTTAAGACTGTAGATTCTGTGTTAGGATTGCCTGTCTTATCAGGAATATaGATTACTGACACCATGGAA | + |
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Preference number: 4 (lower is better) Translates to: KIELSPTVKTVDSVLGLPVLSGI*ITDTME Trigger: TTCCATGGTGTCAGTAATTCATATTCCTGATAAGAC...AGGCAATCCTAACACAGAATCTACAGTCTTAACTGTCGGAGAGAGTTCTATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| CDS-3UTR CCA 90 bp | CATGGAAATAATATCATAAATTTCCCTGTCATCCTCATCAGCAAGGGTCAACAGATTTCTCAGAATTACTaGAACATCCCAACCAAACCA | + |
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Preference number: 4 (lower is better) Translates to: HGNNIINFPVILISKGQQISQNY*NIPTKP Trigger: TGGTTTGGTTGGGATGTTCCAGTAATTCTGAGAAAT...CTGTTGACCCTTGCTGATGAGGATGACAGGGAAATTTATGATATTATTTCCATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| CDS-3UTR CAA 90 bp | AGGACACAAGGCTCTGCACCCTGTGTAGAAAGTACACTTTCCGGCTGTGATATCTCAAGGCCATGCCTGTaGCTAGGGAAGCTGCAGATG | + |
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Preference number: 5 (lower is better) Translates to: RTQGSAPCVESTLSGCDISRPCL*LGKLQM Trigger: CATCTGCAGCTTCCCTAGCAACAGGCATGGCCTTGA...GATATCACAGCCGGAAAGTGTACTTTCTACACAGGGTGCAGAGCCTTGTGTCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| CDS-3UTR CAA 90 bp | AGCAGTAGGCGTGCTTCTGGAGAGCTTCGTAGAGCTTCTGCACACTGCATCCCCTGTCTCATTTGTTTCTaGAACGCTCTTGTGCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: SSRRASGELRRASAHCIPCLICF*NALVLN Trigger: GTTCAGCACAAGAGCGTTCAAGAAACAAATGAGACA...GGGGATGCAGTGTGCAGAAGCTCTACGAAGCTCTCCAGAAGCACGCCTACTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226861.2 |
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| CDS-3UTR CAA 90 bp | AGGACACAAGGCTCTGCACCCTGTGTAGAAAGTACACTTTCCGGCTGTGATATCTGTCTCATTTGTTTCTaGAACGCTCTTGTGCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: RTQGSAPCVESTLSGCDICLICF*NALVLN Trigger: GTTCAGCACAAGAGCGTTCAAGAAACAAATGAGACA...GATATCACAGCCGGAAAGTGTACTTTCTACACAGGGTGCAGAGCCTTGTGTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068532.10 |
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| CDS TCA 72 bp | TTTCTTGAACGCTCTTGTGCTGAACTGGGTTTCTTCTaGATTTCTCAGAATTACTGGAACATCCCAACCAAA | + |
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Preference number: 6 (lower is better) Translates to: FLERSCAELGFF*ISQNYWNIPTK Trigger: TTTGGTTGGGATGTTCCAGTAATTCTGAGAAATTCAGAAGAAACCCAGTTCAGCACAAGAGCGTTCAAGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000068532.10 ENSMUST00000133989.8 ENSMUST00000140114.3 ENSMUST00000226861.2 |
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