Pregenerated sensors for CGREF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029161Ensembl transcript IDs: ENSMUST00000031051.8, ENSMUST00000031051.9
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GACAGATTTGTTCTGTTCTTTATTGGTTGTTTGTGGCCTGAAAGCTaGTTCTCAGCTTATGGTCTCCCTGAGCTGCACAGAAAGTCCTAC | + |
|
Preference number: 1 (lower is better) Translates to: DRFVLFFIGCLWPES*FSAYGLPELHRKSY Trigger: GTAGGACTTTCTGTGCAGCTCAGGGAGACCATAAGCTGAGAAGCAGCTTTCAGGCCACAAACAACCAATAAAGAACAGAACAAATCTGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.8 |
||
| 3UTR-3UTR TCA 90 bp | CTAGCTTGCACCACCGTCCCCATGTCAGAGGTGGCTCTAACCCCACCATATTCAGCTTCTGCTCTGCACTaGGATTCTGAGGGGCTTGAG | + |
|
Preference number: 2 (lower is better) Translates to: LACTTVPMSEVALTPPYSASALH*DSEGLE Trigger: CTCAAGCCCCTCAGAATCTCAGTGCAGAGCAGAAGC...TGAATATGGTGGGGTTAGAGCCACCTCTGACATGGGGACGGTGGTGCAAGCTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031051.8 |
||
| 3UTR-3UTR GCA 90 bp | CTAGCTTGCACCACCGTCCCCATGTCAGAGGTGGCTCTAACCCCACCATATTCAACCATGCTTCTGCTCTaGACTGAGATTCTGAGGGGC | + |
|
Preference number: 2 (lower is better) Translates to: LACTTVPMSEVALTPPYSTMLLL*TEILRG Trigger: GCCCCTCAGAATCTCAGTGCAGAGCAGAAGCATGGT...TGAATATGGTGGGGTTAGAGCCACCTCTGACATGGGGACGGTGGTGCAAGCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031051.8 |
||
| 3UTR-3UTR GCA 90 bp | TTATTGGTTGTTTGTGGCCTGAAAGCTGCTTCTCAGCTTATGGTCTCCCTGAGCCCATATTCAACACCATaGTTCTGCTCTGCACTGAGA | + |
|
Preference number: 2 (lower is better) Translates to: LLVVCGLKAASQLMVSLSPYSTP*FCSALR Trigger: TCTCAGTGCAGAGCAGAAGCATGGTGTTGAATATGG...GCTCAGGGAGACCATAAGCTGAGAAGCAGCTTTCAGGCCACAAACAACCAATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.8 |
||
| 3UTR-3UTR TCA 90 bp | TTCTTTATTGGTTGTTTGTGGCCTGAAAGCTGCTTCTCAGCTTATGGTCTCCCTAGTCCTACTTTCCACTaGAGCCAGAAAGGAGACATG | + |
|
Preference number: 2 (lower is better) Translates to: FFIGCLWPESCFSAYGLPSPTFH*SQKGDM Trigger: CATGTCTCCTTTCTGGCTTCAGTGGAAAGTAGGACT...AGGGAGACCATAAGCTGAGAAGCAGCTTTCAGGCCACAAACAACCAATAAAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.8 |
||
| 3UTR TCA 72 bp | CCCCACCATATTCAACACCATGCTTCTGCTCTGCACTaGGATTCTGAGGGGCTTGAGCCTATGCCGTCGGGC | + |
|
Preference number: 3 (lower is better) Translates to: PHHIQHHASALH*DSEGLEPMPSG Trigger: GCCCGACGGCATAGGCTCAAGCCCCTCAGAATCTCAGTGCAGAGCAGAAGCATGGTGTTGAATATGGTGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031051.8 |
||
| 3UTR CCA 72 bp | TACGCAGTAGCCCAGCCTGGCTTCAAACTTGCTATGTaGCCTAGGCTAGCCCGGAGCTCTCAATGCTTCTGG | + |
|
Preference number: 3 (lower is better) Translates to: YAVAQPGFKLAM*PRLARSSQCFW Trigger: CCAGAAGCATTGAGAGCTCCGGGCTAGCCTAGGCCACATAGCAAGTTTGAAGCCAGGCTGGGCTACTGCGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.8 |
||
| 3UTR GCA 72 bp | TCTAACCCCACCATATTCAACACCATGCTTCTGCTCTaGACTGAGATTCTGAGGGGCTTGAGCCTATGCCGT | + |
|
Preference number: 3 (lower is better) Translates to: SNPTIFNTMLLL*TEILRGLSLCR Trigger: ACGGCATAGGCTCAAGCCCCTCAGAATCTCAGTGCAGAGCAGAAGCATGGTGTTGAATATGGTGGGGTTAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031051.8 |
||
| CDS TCA 90 bp | CCCGGTCCATGTGCTCAGGATCCTCTTCCATCTTCTCTAGTCCCTTaGGATAATTCTGCAGATGTCGGAGCTGCTCAGGGCCTGGCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: PGPCAQDPLPSSLVP*DNSADVGAAQGLAG Trigger: TCCAGCCAGGCCCTGAGCAGCTCCGACATCTGCAGAATTATCTCAAGGGACTAGAGAAGATGGAAGAGGATCCTGAGCACATGGACCGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS TCA 90 bp | TTGATGAGCTCTGCAGGAGTCATGAGCCCGTCTCCATCCAGGTCCTaGGTCTCGAGCACCGAGTCTACTACTAGGATCACCGGGTTGATG | + |
|
Preference number: 5 (lower is better) Translates to: LMSSAGVMSPSPSRS*VSSTESTTRITGLM Trigger: CATCAACCCGGTGATCCTAGTAGTAGACTCGGTGCTCGAGACTCAGGACCTGGATGGAGACGGGCTCATGACTCCTGCAGAGCTCATCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS GCA 90 bp | AAGGGACTCTGTGTGTTTGGGGACTTCTGGGAAGTTGATGAGCTCTaGAGGAGTCATGAGCCCGTCTCCATCCAGGTCCTGAGTCTCGAG | + |
|
Preference number: 5 (lower is better) Translates to: KGLCVFGDFWEVDEL*RSHEPVSIQVLSLE Trigger: CTCGAGACTCAGGACCTGGATGGAGACGGGCTCATGACTCCTGCAGAGCTCATCAACTTCCCAGAAGTCCCCAAACACACAGAGTCCCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS CAA 90 bp | AGAGCTGGGGGAAGGGACTCTGTGTGTTTGGGGACTTCTGGGAAGTaGATGAGCTCTGCAGGAGTCATGAGCCCGTCTCCATCCAGGTCC | + |
|
Preference number: 6 (lower is better) Translates to: RAGGRDSVCLGTSGK*MSSAGVMSPSPSRS Trigger: GGACCTGGATGGAGACGGGCTCATGACTCCTGCAGAGCTCATCAACTTCCCAGAAGTCCCCAAACACACAGAGTCCCTTCCCCCAGCTCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS CAA 90 bp | GCAGGTTGTGGCTCCTGGAGAGCTGGGGGAAGGGACTCTGTGTGTTaGGGGACTTCTGGGAAGTTGATGAGCTCTGCAGGAGTCATGAGC | + |
|
Preference number: 6 (lower is better) Translates to: AGCGSWRAGGRDSVC*GTSGKLMSSAGVMS Trigger: GCTCATGACTCCTGCAGAGCTCATCAACTTCCCAGAAGTCCCCAAACACACAGAGTCCCTTCCCCCAGCTCTCCAGGAGCCACAACCTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS TCA 72 bp | TCTCGAGCACCGAGTCTACTACTAGGATCACCGGGTTaGTGGGAAAGTGTGCAGCTCCAGGGGCCAGAGCTG | + |
|
Preference number: 6 (lower is better) Translates to: SRAPSLLLGSPG*WESVQLQGPEL Trigger: CAGCTCTGGCCCCTGGAGCTGCACACTTTCCCATCAACCCGGTGATCCTAGTAGTAGACTCGGTGCTCGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS CAA 72 bp | GTCTCGAGCACCGAGTCTACTACTAGGATCACCGGGTaGATGGGAAAGTGTGCAGCTCCAGGGGCCAGAGCT | + |
|
Preference number: 6 (lower is better) Translates to: VSSTESTTRITG*MGKCAAPGARA Trigger: AGCTCTGGCCCCTGGAGCTGCACACTTTCCCATCAACCCGGTGATCCTAGTAGTAGACTCGGTGCTCGAGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS TCA 72 bp | TCTGCAGGAGTCATGAGCCCGTCTCCATCCAGGTCCTaGGTCTCGAGCACCGAGTCTACTACTAGGATCACC | + |
|
Preference number: 6 (lower is better) Translates to: SAGVMSPSPSRS*VSSTESTTRIT Trigger: GGTGATCCTAGTAGTAGACTCGGTGCTCGAGACTCAGGACCTGGATGGAGACGGGCTCATGACTCCTGCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS CAA 72 bp | TGTCCAGCCTCCTGTTCAGGCTCCAAGGACGCCCTCTaGGCCTCTACCTGGCTCCTAATTTCTTTAGTCCCC | + |
|
Preference number: 6 (lower is better) Translates to: CPASCSGSKDAL*ASTWLLISLVP Trigger: GGGGACTAAAGAAATTAGGAGCCAGGTAGAGGCCAAGAGGGCGTCCTTGGAGCCTGAACAGGAGGCTGGACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS CCA 72 bp | GAGATAATTCTGCAGATGTCGGAGCTGCTCAGGGCCTaGCTGGAAAGGGTTGGGTGTGAGCTGCTGTTGTAC | + |
|
Preference number: 6 (lower is better) Translates to: EIILQMSELLRA*LERVGCELLLY Trigger: GTACAACAGCAGCTCACACCCAACCCTTTCCAGCCAGGCCCTGAGCAGCTCCGACATCTGCAGAATTATCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS TCA 72 bp | TCTTCAGGGCTTAGGGTATCTACTTTTCCCTCTGTCTaGTGTCCAGCCTCCTGTTCAGGCTCCAAGGACGCC | + |
|
Preference number: 6 (lower is better) Translates to: SSGLRVSTFPSV*CPASCSGSKDA Trigger: GGCGTCCTTGGAGCCTGAACAGGAGGCTGGACATCAGACAGAGGGAAAAGTAGATACCCTAAGCCCTGAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS GCA 72 bp | GCAAAGAGCGAAAGCAGGACTTGCTCCCGGTCCATGTaGTCAGGATCCTCTTCCATCTTCTCTAGTCCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: AKSESRTCSRSM*SGSSSIFSSPL Trigger: CAAGGGACTAGAGAAGATGGAAGAGGATCCTGAGCACATGGACCGGGAGCAAGTCCTGCTTTCGCTCTTTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS CCA 72 bp | GTTGTACCTCAGGGTCCAACCTTGCAACTCCATCCTTaGGAGCAGCTCGACCTAAAGGGAGCAGCAATAGTG | + |
|
Preference number: 6 (lower is better) Translates to: VVPQGPTLQLHP*EQLDLKGAAIV Trigger: CACTATTGCTGCTCCCTTTAGGTCGAGCTGCTCCCAAGGATGGAGTTGCAAGGTTGGACCCTGAGGTACAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS TCA 72 bp | CCACCAGCAGTTCTTTGGCTTCTCCTTCATTGTCCTTaGTCTCCACCTGTTCCTCAGCACCTTCTCTGGGAC | + |
|
Preference number: 6 (lower is better) Translates to: PPAVLWLLLHCP*SPPVPQHLLWD Trigger: GTCCCAGAGAAGGTGCTGAGGAACAGGTGGAGATCAAGGACAATGAAGGAGAAGCCAAAGAACTGCTGGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS CAA 90 bp | AGGCTCTCCAGTGTTTCCACCAGCAGTTCTTTGGCTTCTCCTTCATaGTCCTTGATCTCCACCTGTTCCTCAGCACCTTCTCTGGGACCT | + |
|
Preference number: 6 (lower is better) Translates to: RLSSVSTSSSLASPS*SLISTCSSAPSLGP Trigger: AGGTCCCAGAGAAGGTGCTGAGGAACAGGTGGAGATCAAGGACAATGAAGGAGAAGCCAAAGAACTGCTGGTGGAAACACTGGAGAGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS CAA 90 bp | TCCAGTGTTTCCACCAGCAGTTCTTTGGCTTCTCCTTCATTGTCCTaGATCTCCACCTGTTCCTCAGCACCTTCTCTGGGACCTGGAACA | + |
|
Preference number: 6 (lower is better) Translates to: SSVSTSSSLASPSLS*ISTCSSAPSLGPGT Trigger: TGTTCCAGGTCCCAGAGAAGGTGCTGAGGAACAGGTGGAGATCAAGGACAATGAAGGAGAAGCCAAAGAACTGCTGGTGGAAACACTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS TCA 72 bp | TGTGCTCAGGATCCTCTTCCATCTTCTCTAGTCCCTTaGGATAATTCTGCAGATGTCGGAGCTGCTCAGGGC | + |
|
Preference number: 6 (lower is better) Translates to: CAQDPLPSSLVP*DNSADVGAAQG Trigger: GCCCTGAGCAGCTCCGACATCTGCAGAATTATCTCAAGGGACTAGAGAAGATGGAAGAGGATCCTGAGCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS CAA 72 bp | GTCATAGTCATGAAGAGCAAAGAGCGAAAGCAGGACTaGCTCCCGGTCCATGTGCTCAGGATCCTCTTCCAT | + |
|
Preference number: 6 (lower is better) Translates to: VIVMKSKERKQD*LPVHVLRILFH Trigger: ATGGAAGAGGATCCTGAGCACATGGACCGGGAGCAAGTCCTGCTTTCGCTCTTTGCTCTTCATGACTATGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS CAA 72 bp | TCCACCAGCAGTTCTTTGGCTTCTCCTTCATTGTCCTaGATCTCCACCTGTTCCTCAGCACCTTCTCTGGGA | + |
|
Preference number: 6 (lower is better) Translates to: STSSSLASPSLS*ISTCSSAPSLG Trigger: TCCCAGAGAAGGTGCTGAGGAACAGGTGGAGATCAAGGACAATGAAGGAGAAGCCAAAGAACTGCTGGTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS CCA 72 bp | ACCTGGCTCCTAATTTCTTTAGTCCCCAGGGACTGCTaGGTTTCTGACTGCAGTGGACTGTTGGCTAAAAGT | + |
|
Preference number: 6 (lower is better) Translates to: TWLLISLVPRDC*VSDCSGLLAKS Trigger: ACTTTTAGCCAACAGTCCACTGCAGTCAGAAACCCAGCAGTCCCTGGGGACTAAAGAAATTAGGAGCCAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||
| CDS CAA 72 bp | GTGTTTAGGCTCTCCAGTGTTTCCACCAGCAGTTCTTaGGCTTCTCCTTCATTGTCCTTGATCTCCACCTGT | + |
|
Preference number: 6 (lower is better) Translates to: VFRLSSVSTSSS*ASPSLSLISTC Trigger: ACAGGTGGAGATCAAGGACAATGAAGGAGAAGCCAAAGAACTGCTGGTGGAAACACTGGAGAGCCTAAACAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031051.9 |
||