Pregenerated sensors for CGGBP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054604Ensembl transcript IDs: ENSMUST00000067744.8
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTACTAACTTTCCCTCAAGGGGACGGAAACCTCATTCTAAGGACATaGTACAACCCTAACAGAATGCACTCTGCCCCTAGAGATTCAAAA | + |
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Preference number: 1 (lower is better) Translates to: LLTFPQGDGNLILRT*YNPNRMHSAPRDSK Trigger: TTTTGAATCTCTAGGGGCAGAGTGCATTCTGTTAGGGTTGTATCATGTCCTTAGAATGAGGTTTCCGTCCCCTTGAGGGAAAGTTAGTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR CCA 90 bp | TTGTTAACATTCATGTACACAGCCTTTCAGGCCAAGGTTTTAGCTTaGGAATCTGGCCAATTGTATGTCCAACTTCAGAACATTCCCAAT | + |
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Preference number: 1 (lower is better) Translates to: LLTFMYTAFQAKVLA*ESGQLYVQLQNIPN Trigger: ATTGGGAATGTTCTGAAGTTGGACATACAATTGGCCAGATTCCCAAGCTAAAACCTTGGCCTGAAAGGCTGTGTACATGAATGTTAACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR CAA 90 bp | ACGCCATTAATCCCAGCACTCACGAGGGAAAGAGGCAGGTGGGTCTaGAGGCTAGCCTCTAGTGAGTTCCAGGACTGCCAGGGCTATGTA | + |
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Preference number: 2 (lower is better) Translates to: TPLIPALTRERGRWV*RLASSEFQDCQGYV Trigger: TACATAGCCCTGGCAGTCCTGGAACTCACTAGAGGCTAGCCTCAAGACCCACCTGCCTCTTTCCCTCGTGAGTGCTGGGATTAATGGCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR-3UTR TCA 90 bp | TTGCTGGGCGTGATAGTACACGCCATTAATCCCAGCACTCACGAGGGAAAGAGGAAGCTTACAGAAGAGTaGGGTGTAGAAAACCTAAAC | + |
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Preference number: 2 (lower is better) Translates to: LLGVIVHAINPSTHEGKRKLTEE*GVENLN Trigger: GTTTAGGTTTTCTACACCTCACTCTTCTGTAAGCTT...CCTCTTTCCCTCGTGAGTGCTGGGATTAATGGCGTGTACTATCACGCCCAGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR-3UTR TCA 90 bp | CAAGGTTTTAGCTTGGGAATCTGGCCAATTGTATGTCCAACTTCAGAACATTCCACTGGCAGGATACAGTaGGAGTCTGGAAGACATCCT | + |
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Preference number: 2 (lower is better) Translates to: QGFSLGIWPIVCPTSEHSTGRIQ*ESGRHP Trigger: AGGATGTCTTCCAGACTCTCACTGTATCCTGCCAGT...GGAATGTTCTGAAGTTGGACATACAATTGGCCAGATTCCCAAGCTAAAACCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR-3UTR TCA 90 bp | CAAGCTAGAACTATTTACTGGCAGGATACAGTGAGAGTCTGGAAGACATCCTACAAACCTAAACACGGTTaGCCTTTGACAGAGCTGATT | + |
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Preference number: 2 (lower is better) Translates to: QARTIYWQDTVRVWKTSYKPKHG*PLTELI Trigger: AATCAGCTCTGTCAAAGGTCAACCGTGTTTAGGTTT...GTAGGATGTCTTCCAGACTCTCACTGTATCCTGCCAGTAAATAGTTCTAGCTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR-3UTR GCA 90 bp | CACATAGCACGCGCCTTAGACACTTCTCATTTGTTATCTAACATGCCAATCATAAGTGAGTTCCAGGACTaGCAGGGCTATGTAGAAACA | + |
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Preference number: 2 (lower is better) Translates to: HIARALDTSHLLSNMPIISEFQD*QGYVET Trigger: TGTTTCTACATAGCCCTGGCAGTCCTGGAACTCACT...TATGATTGGCATGTTAGATAACAAATGAGAAGTGTCTAAGGCGCGTGCTATGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR CAA 90 bp | CTTGTTAACATTCATGTACACAGCCTTTCAGGCCAAGGTTTTAGCTaGGGAATCTGGCCAATTGTATGTCCAACTTCAGAACATTCCCAA | + |
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Preference number: 2 (lower is better) Translates to: LVNIHVHSLSGQGFS*GIWPIVCPTSEHSQ Trigger: TTGGGAATGTTCTGAAGTTGGACATACAATTGGCCAGATTCCCAAGCTAAAACCTTGGCCTGAAAGGCTGTGTACATGAATGTTAACAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR-3UTR GCA 90 bp | CAAGGTTTTAGCTTGGGAATCTGGCCAATTGTATGTCCAACTTCAGAACATTCCCCAAGTTTTAAAACCTaGATCACCAGAGGCAAAGCA | + |
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Preference number: 2 (lower is better) Translates to: QGFSLGIWPIVCPTSEHSPSFKT*ITRGKA Trigger: TGCTTTGCCTCTGGTGATGCAGGTTTTAAAACTTGG...GGAATGTTCTGAAGTTGGACATACAATTGGCCAGATTCCCAAGCTAAAACCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR-3UTR TCA 90 bp | CTTTCAGGCCAAGGTTTTAGCTTGGGAATCTGGCCAATTGTATGTCCAACTTCAACTTTACACCATCGGTaGCTTAAAATTAGCAGTAAG | + |
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Preference number: 2 (lower is better) Translates to: LSGQGFSLGIWPIVCPTSTLHHR*LKISSK Trigger: CTTACTGCTAATTTTAAGTCACCGATGGTGTAAAGT...TGAAGTTGGACATACAATTGGCCAGATTCCCAAGCTAAAACCTTGGCCTGAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR-3UTR CCA 90 bp | CAAGGTTTTAGCTTGGGAATCTGGCCAATTGTATGTCCAACTTCAGAACATTCCAACAGGAGCTGCTATTaGTCCAATAGTAAAGCATCA | + |
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Preference number: 2 (lower is better) Translates to: QGFSLGIWPIVCPTSEHSNRSCY*SNSKAS Trigger: TGATGCTTTACTATTGGACCAATAGCAGCTCCTGTT...GGAATGTTCTGAAGTTGGACATACAATTGGCCAGATTCCCAAGCTAAAACCTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR CAA 90 bp | TCACTTTGCCTCTCTCACATAGCACGCGCCTTAGACACTTCTCATTaGTTATCTAACATGCCAATCATAGTTTTGCAAATCTTTACCAGT | + |
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Preference number: 2 (lower is better) Translates to: SLCLSHIARALDTSH*LSNMPIIVLQIFTS Trigger: ACTGGTAAAGATTTGCAAAACTATGATTGGCATGTTAGATAACAAATGAGAAGTGTCTAAGGCGCGTGCTATGTGAGAGAGGCAAAGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR-3UTR GCA 90 bp | CAGTTTTCTAGGCTAGTTCTCAATCCAAATCATTACGTAACCTCACAAGAAAAAGCAACAGGGCTACAATaGAAGGAAGTTCTTCCATGC | + |
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Preference number: 2 (lower is better) Translates to: QFSRLVLNPNHYVTSQEKATGLQ*KEVLPC Trigger: GCATGGAAGAACTTCCTTGCATTGTAGCCCTGTTGC...TTTTTCTTGTGAGGTTACGTAATGATTTGGATTGAGAACTAGCCTAGAAAACTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR-3UTR CCA 90 bp | TATTTCCTGACTCAGCATCCTGCTTTATTTTACTATAAAGTTCTTGCCTCGTTTGTGAGAGGTATAGCCTaGCAGCAGCTTCAGTTTTCT | + |
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Preference number: 2 (lower is better) Translates to: YFLTQHPALFYYKVLASFVRGIA*QQLQFS Trigger: AGAAAACTGAAGCTGCTGCCAGGCTATACCTCTCAC...AAACGAGGCAAGAACTTTATAGTAAAATAAAGCAGGATGCTGAGTCAGGAAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR CAA 90 bp | TTGCCCGCAAATTCCTTAAGGAAGTGGAAGCAATCATTGTTTACTTaGCTGCTGGTCTGTGTTTTACCAATTGCAGTTAGTAAACAACTA | + |
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Preference number: 2 (lower is better) Translates to: LPANSLRKWKQSLFT*LLVCVLPIAVSKQL Trigger: TAGTTGTTTACTAACTGCAATTGGTAAAACACAGACCAGCAGCAAAGTAAACAATGATTGCTTCCACTTCCTTAAGGAATTTGCGGGCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR-3UTR GCA 90 bp | CAAGGTTTTAGCTTGGGAATCTGGCCAATTGTATGTCCAACTTCAGAACATTCCAATCATTGTTTACTTTaGTGCTGGTCTGTGTTTTAC | + |
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Preference number: 2 (lower is better) Translates to: QGFSLGIWPIVCPTSEHSNHCLL*CWSVFY Trigger: GTAAAACACAGACCAGCAGCAAAGTAAACAATGATT...GGAATGTTCTGAAGTTGGACATACAATTGGCCAGATTCCCAAGCTAAAACCTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR-3UTR GCA 90 bp | CACATAGCACGCGCCTTAGACACTTCTCATTTGTTATCTAACATGCCAATCATAAAATCTTTACCAGTTTaGACAGGCTACTATAACCAC | + |
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Preference number: 2 (lower is better) Translates to: HIARALDTSHLLSNMPIIKSLPV*TGYYNH Trigger: GTGGTTATAGTAGCCTGTGCAAACTGGTAAAGATTT...TATGATTGGCATGTTAGATAACAAATGAGAAGTGTCTAAGGCGCGTGCTATGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR GCA 72 bp | TGGGTCTTGAGGCTAGCCTCTAGTGAGTTCCAGGACTaGCAGGGCTATGTAGAAACACCCTGTGACGGGGGA | + |
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Preference number: 3 (lower is better) Translates to: WVLRLASSEFQD*QGYVETPCDGG Trigger: TCCCCCGTCACAGGGTGTTTCTACATAGCCCTGGCAGTCCTGGAACTCACTAGAGGCTAGCCTCAAGACCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR TCA 72 bp | TTCCCTCAAGGGGACGGAAACCTCATTCTAAGGACATaGTACAACCCTAACAGAATGCACTCTGCCCCTAGA | + |
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Preference number: 3 (lower is better) Translates to: FPQGDGNLILRT*YNPNRMHSAPR Trigger: TCTAGGGGCAGAGTGCATTCTGTTAGGGTTGTATCATGTCCTTAGAATGAGGTTTCCGTCCCCTTGAGGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR TCA 72 bp | CATGTTACTCGACTGCTAGAAGCTGTTCTGCCATGTTaGCTGACAGCGCATATAGTCCCAGACAATAGGGAA | + |
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Preference number: 3 (lower is better) Translates to: HVTRLLEAVLPC*LTAHIVPDNRE Trigger: TTCCCTATTGTCTGGGACTATATGCGCTGTCAGTCAACATGGCAGAACAGCTTCTAGCAGTCGAGTAACATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR CCA 72 bp | CACAGCCTTTCAGGCCAAGGTTTTAGCTTGGGAATCTaGCCAATTGTATGTCCAACTTCAGAACATTCCCAA | + |
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Preference number: 3 (lower is better) Translates to: HSLSGQGFSLGI*PIVCPTSEHSQ Trigger: TTGGGAATGTTCTGAAGTTGGACATACAATTGGCCAGATTCCCAAGCTAAAACCTTGGCCTGAAAGGCTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR-3UTR CAA 90 bp | CTTTCAGGCCAAGGTTTTAGCTTGGGAATCTGGCCAATTGTATGTCCAACTTCAGTACATAAGTTCACTTaGCCTCTCTCACATAGCACG | + |
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Preference number: 3 (lower is better) Translates to: LSGQGFSLGIWPIVCPTSVHKFT*PLSHST Trigger: CGTGCTATGTGAGAGAGGCAAAGTGAACTTATGTAC...TGAAGTTGGACATACAATTGGCCAGATTCCCAAGCTAAAACCTTGGCCTGAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR CCA 72 bp | TTCATGTACACAGCCTTTCAGGCCAAGGTTTTAGCTTaGGAATCTGGCCAATTGTATGTCCAACTTCAGAAC | + |
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Preference number: 3 (lower is better) Translates to: FMYTAFQAKVLA*ESGQLYVQLQN Trigger: GTTCTGAAGTTGGACATACAATTGGCCAGATTCCCAAGCTAAAACCTTGGCCTGAAAGGCTGTGTACATGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR TCA 72 bp | ACATTTCCGGCCTACTATTCCACTTTGAAAAGAATGTaGGCTTCTTTAAGGTCCTGTGAGAGGTATAGCCTG | + |
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Preference number: 3 (lower is better) Translates to: TFPAYYSTLKRM*ASLRSCERYSL Trigger: CAGGCTATACCTCTCACAGGACCTTAAAGAAGCTCACATTCTTTTCAAAGTGGAATAGTAGGCCGGAAATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR TCA 72 bp | TTCAACAAGCTAGAACTATTTACTGGCAGGATACAGTaGGAGTCTGGAAGACATCCTACGACACTGAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: FNKLELFTGRIQ*ESGRHPTTLRK Trigger: TTTTCTCAGTGTCGTAGGATGTCTTCCAGACTCTCACTGTATCCTGCCAGTAAATAGTTCTAGCTTGTTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR CCA 72 bp | AATAAGCAGGAAATTCAACAAGCTAGAACTATTTACTaGCAGGATACAGTGAGAGTCTGGAAGACATCCTAC | + |
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Preference number: 3 (lower is better) Translates to: NKQEIQQARTIY*QDTVRVWKTSY Trigger: GTAGGATGTCTTCCAGACTCTCACTGTATCCTGCCAGTAAATAGTTCTAGCTTGTTGAATTTCCTGCTTATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR-3UTR CAA 90 bp | TTTAATGGAAATTTGTGGCACAATGACCTCAAAGATAACTCCAAGTCACAATCAAATCCCCCATGGCTTTaGTCAAAGACACTAAGAGAG | + |
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Preference number: 3 (lower is better) Translates to: FNGNLWHNDLKDNSKSQSNPPWL*SKTLRE Trigger: CTCTCTTAGTGTCTTTGACAAAAGCCATGGGGGATT...TGATTGTGACTTGGAGTTATCTTTGAGGTCATTGTGCCACAAATTTCCATTAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR-3UTR CAA 90 bp | TTTAATGGAAATTTGTGGCACAATGACCTCAAAGATAACTCCAAGTCACAATCATTTACTATAAAGTTCTaGCCTCGTTTTCTGCACTGT | + |
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Preference number: 3 (lower is better) Translates to: FNGNLWHNDLKDNSKSQSFTIKF*PRFLHC Trigger: ACAGTGCAGAAAACGAGGCAAGAACTTTATAGTAAA...TGATTGTGACTTGGAGTTATCTTTGAGGTCATTGTGCCACAAATTTCCATTAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR TCA 72 bp | ATAGTAAAGCATCAACTACCACTATATAAGGAGGATTaGAAGCTTCTGTACATAAGTTCACTTTGCCTCTCT | + |
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Preference number: 3 (lower is better) Translates to: IVKHQLPLYKED*KLLYISSLCLS Trigger: AGAGAGGCAAAGTGAACTTATGTACAGAAGCTTTCAATCCTCCTTATATAGTGGTAGTTGATGCTTTACTAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR TCA 90 bp | TTGCTGGGCGTGATAGTACACGCCATTAATCCCAGCACTCACGAGGGAAAGAGGTTGCCTCCATCCTCATaGAGCTCACCTCCAAATTCA | + |
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Preference number: 4 (lower is better) Translates to: LLGVIVHAINPSTHEGKRLPPSS*SSPPNS Trigger: TGAATTTGGAGGTGAGCTTCATGAGGATGGAGGCAA...CCTCTTTCCCTCGTGAGTGCTGGGATTAATGGCGTGTACTATCACGCCCAGCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR TCA 90 bp | CAAGGTTTTAGCTTGGGAATCTGGCCAATTGTATGTCCAACTTCAGAACATTCCTCGCCTCAGCTGGTCTaGCTTAGGTATGGACCCTCC | + |
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Preference number: 4 (lower is better) Translates to: QGFSLGIWPIVCPTSEHSSPQLV*LRYGPS Trigger: GGAGGGTCCATACCTAAGTCAGACCAGCTGAGGCGA...GGAATGTTCTGAAGTTGGACATACAATTGGCCAGATTCCCAAGCTAAAACCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR TCA 90 bp | CAAGCTAGAACTATTTACTGGCAGGATACAGTGAGAGTCTGGAAGACATCCTACGCCTTCCTCTTTGTATaGGTCTTTGACTTGAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: QARTIYWQDTVRVWKTSYAFLFV*VFDLRW Trigger: CCACCTCAAGTCAAAGACTCATACAAAGAGGAAGGC...GTAGGATGTCTTCCAGACTCTCACTGTATCCTGCCAGTAAATAGTTCTAGCTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR GCA 90 bp | CTTTCAGGCCAAGGTTTTAGCTTGGGAATCTGGCCAATTGTATGTCCAACTTCACCACATTGCAAGAGGTaGAGAAGAGTTTGCCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: LSGQGFSLGIWPIVCPTSPHCKR*RRVCLH Trigger: ATGGAGGCAAACTCTTCTGCACCTCTTGCAATGTGG...TGAAGTTGGACATACAATTGGCCAGATTCCCAAGCTAAAACCTTGGCCTGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR CCA 90 bp | CTTTCAGGCCAAGGTTTTAGCTTGGGAATCTGGCCAATTGTATGTCCAACTTCAACGATTTCGAGCAGGTaGTGCTGTTACAACAAATCG | + |
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Preference number: 4 (lower is better) Translates to: LSGQGFSLGIWPIVCPTSTISSR*CCYNKS Trigger: CGATTTGTTGTAACAGCACCACCTGCTCGAAATCGT...TGAAGTTGGACATACAATTGGCCAGATTCCCAAGCTAAAACCTTGGCCTGAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR CCA 90 bp | CAAGCTAGAACTATTTACTGGCAGGATACAGTGAGAGTCTGGAAGACATCCTACGTCTTTGACTTGAGGTaGTCACTAATGGCAGACTTG | + |
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Preference number: 4 (lower is better) Translates to: QARTIYWQDTVRVWKTSYVFDLR*SLMADL Trigger: CAAGTCTGCCATTAGTGACCACCTCAAGTCAAAGAC...GTAGGATGTCTTCCAGACTCTCACTGTATCCTGCCAGTAAATAGTTCTAGCTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR CCA 90 bp | CACATAGCACGCGCCTTAGACACTTCTCATTTGTTATCTAACATGCCAATCATATCTCCAGGGGGATGTTaGCTTCCAGGCACATTTTCA | + |
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Preference number: 4 (lower is better) Translates to: HIARALDTSHLLSNMPIISPGGC*LPGTFS Trigger: TGAAAATGTGCCTGGAAGCCAACATCCCCCTGGAGA...TATGATTGGCATGTTAGATAACAAATGAGAAGTGTCTAAGGCGCGTGCTATGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR CCA 90 bp | CACATAGCACGCGCCTTAGACACTTCTCATTTGTTATCTAACATGCCAATCATATATGCTCGCCTCAGCTaGTCTGACTTAGGTATGGAC | + |
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Preference number: 4 (lower is better) Translates to: HIARALDTSHLLSNMPIIYARLS*SDLGMD Trigger: GTCCATACCTAAGTCAGACCAGCTGAGGCGAGCATA...TATGATTGGCATGTTAGATAACAAATGAGAAGTGTCTAAGGCGCGTGCTATGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR TCA 90 bp | AATGGAAATTTGTGGCACAATGACCTCAAAGATAACTCCAAGTCACAATCAGGGGCAGACTTGCGAACATaGTTCAGCACCACATTGCAA | + |
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Preference number: 4 (lower is better) Translates to: NGNLWHNDLKDNSKSQSGADLRT*FSTTLQ Trigger: TTGCAATGTGGTGCTGAATCATGTTCGCAAGTCTGC...CCCTGATTGTGACTTGGAGTTATCTTTGAGGTCATTGTGCCACAAATTTCCATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR GCA 90 bp | AATGGAAATTTGTGGCACAATGACCTCAAAGATAACTCCAAGTCACAATCAGGGAGGTGCAGAAGAGTTTaGCTCCATCCTCATGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: NGNLWHNDLKDNSKSQSGRCRRV*LHPHEA Trigger: AGCTTCATGAGGATGGAGGCAAACTCTTCTGCACCT...CCCTGATTGTGACTTGGAGTTATCTTTGAGGTCATTGTGCCACAAATTTCCATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR GCA 90 bp | TCTTTACCAGTTTGCACAGGCTACTATAACCACTGTTATTATTTACGAGACAAAGTTGCACTGAAGCGATaGAGTCAGGGGCCTCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: SLPVCTGYYNHCYYLRDKVALKR*SQGPLL Trigger: AAGCAGAGGCCCCTGACTGCATCGCTTCAGTGCAAC...TTTGTCTCGTAAATAATAACAGTGGTTATAGTAGCCTGTGCAAACTGGTAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR CAA 72 bp | TTTCAGGCCAAGGTTTTAGCTTGGGAATCTGGCCAATaGTATGTCCAACTTCAGAACATTCCCAATCAGACA | + |
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Preference number: 4 (lower is better) Translates to: FQAKVLAWESGQ*YVQLQNIPNQT Trigger: TGTCTGATTGGGAATGTTCTGAAGTTGGACATACAATTGGCCAGATTCCCAAGCTAAAACCTTGGCCTGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| 3UTR CAA 72 bp | ATTCATGTACACAGCCTTTCAGGCCAAGGTTTTAGCTaGGGAATCTGGCCAATTGTATGTCCAACTTCAGAA | + |
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Preference number: 4 (lower is better) Translates to: IHVHSLSGQGFS*GIWPIVCPTSE Trigger: TTCTGAAGTTGGACATACAATTGGCCAGATTCCCAAGCTAAAACCTTGGCCTGAAAGGCTGTGTACATGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR GCA 90 bp | AATGGAAATTTGTGGCACAATGACCTCAAAGATAACTCCAAGTCACAATCAGGGATTTCGAGCAGGTGGTaGTGTTACAACAAATCGTTC | + |
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Preference number: 4 (lower is better) Translates to: NGNLWHNDLKDNSKSQSGISSRW*CYNKSF Trigger: GAACGATTTGTTGTAACAGCACCACCTGCTCGAAAT...CCCTGATTGTGACTTGGAGTTATCTTTGAGGTCATTGTGCCACAAATTTCCATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR GCA 90 bp | TCTTTACCAGTTTGCACAGGCTACTATAACCACTGTTATTATTTACGAGACAAAGCAGTCAGGGGCCTCTaGTTCTTTCTCACATTTTGC | + |
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Preference number: 4 (lower is better) Translates to: SLPVCTGYYNHCYYLRDKAVRGL*FFLTFC Trigger: GCAAAATGTGAGAAAGAAGCAGAGGCCCCTGACTGC...TTTGTCTCGTAAATAATAACAGTGGTTATAGTAGCCTGTGCAAACTGGTAAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR TCA 90 bp | CAGTTTTCTAGGCTAGTTCTCAATCCAAATCATTACGTAACCTCACAAGAAAAAAACAATCTTGTGAGCTaGGGAGCTGATTTTCATTCT | + |
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Preference number: 4 (lower is better) Translates to: QFSRLVLNPNHYVTSQEKNNLVS*GADFHS Trigger: AGAATGAAAATCAGCTCCTCAGCTCACAAGATTGTT...TTTTTCTTGTGAGGTTACGTAATGATTTGGATTGAGAACTAGCCTAGAAAACTG 37% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR CCA 90 bp | TATTTCCTGACTCAGCATCCTGCTTTATTTTACTATAAAGTTCTTGCCTCGTTTATTTTCACAAAGTCCTaGATAACACTGGCTTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: YFLTQHPALFYYKVLASFIFTKS*ITLAFS Trigger: AGAGAAAGCCAGTGTTATCCAGGACTTTGTGAAAAT...AAACGAGGCAAGAACTTTATAGTAAAATAAAGCAGGATGCTGAGTCAGGAAATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS GCA 90 bp | TATGGACCCTCCGTTCTTCACATGCCGGGACAGGAACGCTCGCACTaGGGGATGATCGGCCTTCTCCAGGGGGATGTTGGCTTCCAGGCA | + |
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Preference number: 5 (lower is better) Translates to: YGPSVLHMPGQERSH*GMIGLLQGDVGFQA Trigger: TGCCTGGAAGCCAACATCCCCCTGGAGAAGGCCGATCATCCCGCAGTGCGAGCGTTCCTGTCCCGGCATGTGAAGAACGGAGGGTCCATA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS TCA 90 bp | CCTCCGTTCTTCACATGCCGGGACAGGAACGCTCGCACTGCGGGATaGTCGGCCTTCTCCAGGGGGATGTTGGCTTCCAGGCACATTTTC | + |
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Preference number: 5 (lower is better) Translates to: PPFFTCRDRNARTAG*SAFSRGMLASRHIF Trigger: GAAAATGTGCCTGGAAGCCAACATCCCCCTGGAGAAGGCCGATCATCCCGCAGTGCGAGCGTTCCTGTCCCGGCATGTGAAGAACGGAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS TCA 90 bp | TTCATTCTCGTAGCCATCAGGCAGATATGCTCGCCTCAGCTGGTCTaGCTTAGGTATGGACCCTCCGTTCTTCACATGCCGGGACAGGAA | + |
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Preference number: 5 (lower is better) Translates to: FILVAIRQICSPQLV*LRYGPSVLHMPGQE Trigger: TTCCTGTCCCGGCATGTGAAGAACGGAGGGTCCATACCTAAGTCAGACCAGCTGAGGCGAGCATATCTGCCTGATGGCTACGAGAATGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR CAA 90 bp | AATGGAAATTTGTGGCACAATGACCTCAAAGATAACTCCAAGTCACAATCAGGGACTGGCTTTCTCTGTTaGCGCAGGACTGTTGCACTG | + |
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Preference number: 5 (lower is better) Translates to: NGNLWHNDLKDNSKSQSGTGFLC*RRTVAL Trigger: CAGTGCAACAGTCCTGCGCAAACAGAGAAAGCCAGT...CCCTGATTGTGACTTGGAGTTATCTTTGAGGTCATTGTGCCACAAATTTCCATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS-3UTR CAA 90 bp | TTTAATGGAAATTTGTGGCACAATGACCTCAAAGATAACTCCAAGTCACAATCATTCTCCAGGGGGATGTaGGCTTCCAGGCACATTTTC | + |
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Preference number: 5 (lower is better) Translates to: FNGNLWHNDLKDNSKSQSFSRGM*ASRHIF Trigger: GAAAATGTGCCTGGAAGCCAACATCCCCCTGGAGAA...TGATTGTGACTTGGAGTTATCTTTGAGGTCATTGTGCCACAAATTTCCATTAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS TCA 72 bp | TTCACATGCCGGGACAGGAACGCTCGCACTGCGGGATaGTCGGCCTTCTCCAGGGGGATGTTGGCTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: FTCRDRNARTAG*SAFSRGMLASR Trigger: CCTGGAAGCCAACATCCCCCTGGAGAAGGCCGATCATCCCGCAGTGCGAGCGTTCCTGTCCCGGCATGTGAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS GCA 72 bp | TCCGTTCTTCACATGCCGGGACAGGAACGCTCGCACTaGGGGATGATCGGCCTTCTCCAGGGGGATGTTGGC | + |
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Preference number: 6 (lower is better) Translates to: SVLHMPGQERSH*GMIGLLQGDVG Trigger: GCCAACATCCCCCTGGAGAAGGCCGATCATCCCGCAGTGCGAGCGTTCCTGTCCCGGCATGTGAAGAACGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS TCA 72 bp | GTAGCCATCAGGCAGATATGCTCGCCTCAGCTGGTCTaGCTTAGGTATGGACCCTCCGTTCTTCACATGCCG | + |
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Preference number: 6 (lower is better) Translates to: VAIRQICSPQLV*LRYGPSVLHMP Trigger: CGGCATGTGAAGAACGGAGGGTCCATACCTAAGTCAGACCAGCTGAGGCGAGCATATCTGCCTGATGGCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS CAA 90 bp | CAGGCACATTTTCACAAAGTCCTGGATAACACTGGCTTTCTCTGTTaGCGCAGGACTGTTGCACTGAAGCGATGCAGTCAGGGGCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: QAHFHKVLDNTGFLC*RRTVALKRCSQGPL Trigger: CAGAGGCCCCTGACTGCATCGCTTCAGTGCAACAGTCCTGCGCAAACAGAGAAAGCCAGTGTTATCCAGGACTTTGTGAAAATGTGCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS TCA 72 bp | GACTTGAGGTGGTCACTAATGGCAGACTTGCGAACATaGTTCAGCACCACATTGCAAGAGGTGCAGAAGAGT | + |
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Preference number: 6 (lower is better) Translates to: DLRWSLMADLRT*FSTTLQEVQKS Trigger: ACTCTTCTGCACCTCTTGCAATGTGGTGCTGAATCATGTTCGCAAGTCTGCCATTAGTGACCACCTCAAGTC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS GCA 72 bp | ACTTGCGAACATGATTCAGCACCACATTGCAAGAGGTaGAGAAGAGTTTGCCTCCATCCTCATGAAGCTCAC | + |
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Preference number: 6 (lower is better) Translates to: TCEHDSAPHCKR*RRVCLHPHEAH Trigger: GTGAGCTTCATGAGGATGGAGGCAAACTCTTCTGCACCTCTTGCAATGTGGTGCTGAATCATGTTCGCAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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| CDS CAA 72 bp | TTTCACAAAGTCCTGGATAACACTGGCTTTCTCTGTTaGCGCAGGACTGTTGCACTGAAGCGATGCAGTCAG | + |
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Preference number: 6 (lower is better) Translates to: FHKVLDNTGFLC*RRTVALKRCSQ Trigger: CTGACTGCATCGCTTCAGTGCAACAGTCCTGCGCAAACAGAGAAAGCCAGTGTTATCCAGGACTTTGTGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067744.8 |
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