RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CGA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028298

Ensembl transcript IDs: ENSMUST00000029975.10, ENSMUST00000108130.2, ENSMUST00000135871.8

Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGAAGTCTGGTAGGGAGGAGGTGGTGACACACAGCGCCATTGAATaGCTCGGCTCAGCAGCCGTCAGCACAGCCCTCTGCGCGCTCAGA +
Preference number: 1 (lower is better)
Translates to: QKSGREEVVTHSAIE*LGSAAVSTALCALR
Trigger: TCTGAGCGCGCAGAGGGCTGTGCTGACGGCTGCTGAGCCGAGCCATTCAATGGCGCTGTGTGTCACCACCTCCTCCCTACCAGACTTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029975.10
3UTR CCA 72 bp GGTAGGGAGGAGGTGGTGACACACAGCGCCATTGAATaGCTCGGCTCAGCAGCCGTCAGCACAGCCCTCTGC +
Preference number: 3 (lower is better)
Translates to: GREEVVTHSAIE*LGSAAVSTALC
Trigger: GCAGAGGGCTGTGCTGACGGCTGCTGAGCCGAGCCATTCAATGGCGCTGTGTGTCACCACCTCCTCCCTACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029975.10
3UTR TCA 72 bp CTGAAGCGCGTCAGAAGTCTGGTAGGGAGGAGGTGGTaGCACACAGCGCCATTGAATGGCTCGGCTCAGCAG +
Preference number: 3 (lower is better)
Translates to: LKRVRSLVGRRW*HTAPLNGSAQQ
Trigger: CTGCTGAGCCGAGCCATTCAATGGCGCTGTGTGTCACCACCTCCTCCCTACCAGACTTCTGACGCGCTTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029975.10
3UTR TCA 72 bp CATATTTCCCTAACGAGAAGAGACTGCAGATTGTACTaGAGTATAAGGGATGTAACCGTAAAGAGGCAGTGT +
Preference number: 3 (lower is better)
Translates to: HISLTRRDCRLY*SIRDVTVKRQC
Trigger: ACACTGCCTCTTTACGGTTACATCCCTTATACTTCAGTACAATCTGCAGTCTCTTCTCGTTAGGGAAATATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029975.10
CDS-3UTR CCA 90 bp GTAACTGAAGCGCGTCAGAAGTCTGGTAGGGAGGAGGTGGTGACACACAGCGCCTTGTCTTCTTGGACCTaGCGGGAGTGGGATATGCCC +
Preference number: 4 (lower is better)
Translates to: VTEARQKSGREEVVTHSALSSWT*REWDMP
Trigger: GGGCATATCCCACTCCCGCCAGGTCCAAGAAGACAA...GGCGCTGTGTGTCACCACCTCCTCCCTACCAGACTTCTGACGCGCTTCAGTTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029975.10
CDS-3UTR CCA 90 bp ACAGCGCCATTGAATGGCTCGGCTCAGCAGCCGTCAGCACAGCCCTCTGCGCGCTGGGGGCTCCTAGCTTaGAGAAGTATTTATTTTCCT +
Preference number: 4 (lower is better)
Translates to: TAPLNGSAQQPSAQPSARWGLLA*RSIYFP
Trigger: AGGAAAATAAATACTTCTCCAAGCTAGGAGCCCCCA...GCGCGCAGAGGGCTGTGCTGACGGCTGCTGAGCCGAGCCATTCAATGGCGCTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029975.10
CDS-3UTR GCA 90 bp CCATTGAATGGCTCGGCTCAGCAGCCGTCAGCACAGCCCTCTGCGCGCTCAGAATGTGGCCTTAGTAAATaGTTTGGCCACACAGCATGT +
Preference number: 4 (lower is better)
Translates to: PLNGSAQQPSAQPSARSECGLSK*FGHTAC
Trigger: ACATGCTGTGTGGCCAAAGCATTTACTAAGGCCACA...TTCTGAGCGCGCAGAGGGCTGTGCTGACGGCTGCTGAGCCGAGCCATTCAATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029975.10
CDS-3UTR GCA 90 bp CCATTGAATGGCTCGGCTCAGCAGCCGTCAGCACAGCCCTCTGCGCGCTCAGAAGACCAGAATGACAGCTaGATATTTTCTGTAGTAATC +
Preference number: 4 (lower is better)
Translates to: PLNGSAQQPSAQPSARSEDQNDS*IFSVVI
Trigger: GATTACTACAGAAAATATGCAGCTGTCATTCTGGTC...TTCTGAGCGCGCAGAGGGCTGTGCTGACGGCTGCTGAGCCGAGCCATTCAATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029975.10
CDS-3UTR CCA 90 bp AGACTGCAGATTGTACTGAAGTATAAGGGATGTAACCGTAAAGAGGCAGTGTGTGAGTGGGATATGCCCTaGAGAAGCAACAGCCCATAC +
Preference number: 4 (lower is better)
Translates to: RLQIVLKYKGCNRKEAVCEWDMP*RSNSPY
Trigger: GTATGGGCTGTTGCTTCTCCAGGGCATATCCCACTC...ACACACTGCCTCTTTACGGTTACATCCCTTATACTTCAGTACAATCTGCAGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029975.10
CDS-3UTR TCA 90 bp AGACTGCAGATTGTACTGAAGTATAAGGGATGTAACCGTAAAGAGGCAGTGTGTCCATCAGGAAGAGAATaGAGAATATGCAGGAACATG +
Preference number: 4 (lower is better)
Translates to: RLQIVLKYKGCNRKEAVCPSGRE*RICRNM
Trigger: CATGTTCCTGCATATTCTTCATTCTCTTCCTGATGG...ACACACTGCCTCTTTACGGTTACATCCCTTATACTTCAGTACAATCTGCAGTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029975.10
CDS-3UTR TCA 90 bp AGACTGCAGATTGTACTGAAGTATAAGGGATGTAACCGTAAAGAGGCAGTGTGTCATTCTGGGCAACCCTaGATAATAAAGTCTCCATCA +
Preference number: 4 (lower is better)
Translates to: RLQIVLKYKGCNRKEAVCHSGQP*IIKSPS
Trigger: TGATGGAGACTTTATTATTCAGGGTTGCCCAGAATG...ACACACTGCCTCTTTACGGTTACATCCCTTATACTTCAGTACAATCTGCAGTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029975.10
CDS-3UTR CCA 90 bp AGACTGCAGATTGTACTGAAGTATAAGGGATGTAACCGTAAAGAGGCAGTGTGTCGAGGTAATATTCTTTaGAACCAGCATTGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: RLQIVLKYKGCNRKEAVCRGNIL*NQHCLL
Trigger: AAGAAGACAATGCTGGTTCCAAAGAATATTACCTCG...ACACACTGCCTCTTTACGGTTACATCCCTTATACTTCAGTACAATCTGCAGTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029975.10
CDS GCA 90 bp CTTTGGAACCAGCATTGTCTTCTTGGACCTGGCGGGAGTGGGATATaGCCTGGAGAAGCAACAGCCCATACACTGGTAGATGGGGGCTCC +
Preference number: 5 (lower is better)
Translates to: LWNQHCLLGPGGSGI*PGEATAHTLVDGGS
Trigger: GGAGCCCCCATCTACCAGTGTATGGGCTGTTGCTTCTCCAGGGCATATCCCACTCCCGCCAGGTCCAAGAAGACAATGCTGGTTCCAAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029975.10
ENSMUST00000108130.2
ENSMUST00000135871.8
CDS CCA 90 bp GAACCAGCATTGTCTTCTTGGACCTGGCGGGAGTGGGATATGCCCTaGAGAAGCAACAGCCCATACACTGGTAGATGGGGGCTCCTAGCT +
Preference number: 5 (lower is better)
Translates to: EPALSSWTWREWDMP*RSNSPYTGRWGLLA
Trigger: AGCTAGGAGCCCCCATCTACCAGTGTATGGGCTGTTGCTTCTCCAGGGCATATCCCACTCCCGCCAGGTCCAAGAAGACAATGCTGGTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029975.10
ENSMUST00000108130.2
ENSMUST00000135871.8
CDS-3UTR CAA 90 bp CAGTGTGTAACTGAAGCGCGTCAGAAGTCTGGTAGGGAGGAGGTGGTGACACACTCTTTGGAACCAGCATaGTCTTCTTGGACCTGGCGG +
Preference number: 5 (lower is better)
Translates to: QCVTEARQKSGREEVVTHSLEPA*SSWTWR
Trigger: CCGCCAGGTCCAAGAAGACAATGCTGGTTCCAAAGA...GTGTGTCACCACCTCCTCCCTACCAGACTTCTGACGCGCTTCAGTTACACACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029975.10
CDS CCA 90 bp AAATGCTTTGGCCACACAGCATGTGGCCTCCGAGGTAATATTCTTTaGAACCAGCATTGTCTTCTTGGACCTGGCGGGAGTGGGATATGC +
Preference number: 5 (lower is better)
Translates to: KCFGHTACGLRGNIL*NQHCLLGPGGSGIC
Trigger: GCATATCCCACTCCCGCCAGGTCCAAGAAGACAATGCTGGTTCCAAAGAATATTACCTCGGAGGCCACATGCTGTGTGGCCAAAGCATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029975.10
ENSMUST00000108130.2
ENSMUST00000135871.8
CDS CCA 90 bp GAGTGGGATATGCCCTGGAGAAGCAACAGCCCATACACTGGTAGATaGGGGCTCCTAGCTTGGAGAAGTATTTATTTTCCTTTAGTTTAC +
Preference number: 5 (lower is better)
Translates to: EWDMPWRSNSPYTGR*GLLAWRSIYFPLVY
Trigger: GTAAACTAAAGGAAAATAAATACTTCTCCAAGCTAGGAGCCCCCATCTACCAGTGTATGGGCTGTTGCTTCTCCAGGGCATATCCCACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029975.10
ENSMUST00000108130.2
ENSMUST00000135871.8
CDS-3UTR CAA 90 bp AGACTGCAGATTGTACTGAAGTATAAGGGATGTAACCGTAAAGAGGCAGTGTGTGCCTTAGTAAATGCTTaGGCCACACAGCATGTGGCC +
Preference number: 5 (lower is better)
Translates to: RLQIVLKYKGCNRKEAVCALVNA*ATQHVA
Trigger: GGCCACATGCTGTGTGGCCAAAGCATTTACTAAGGC...ACACACTGCCTCTTTACGGTTACATCCCTTATACTTCAGTACAATCTGCAGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029975.10
CDS-3UTR CAA 90 bp CTGCAGATTGTACTGAAGTATAAGGGATGTAACCGTAAAGAGGCAGTGTGTAACATGGGGGCTCCTAGCTaGGAGAAGTATTTATTTTCC +
Preference number: 5 (lower is better)
Translates to: LQIVLKYKGCNRKEAVCNMGAPS*EKYLFS
Trigger: GGAAAATAAATACTTCTCCAAGCTAGGAGCCCCCAT...GTTACACACTGCCTCTTTACGGTTACATCCCTTATACTTCAGTACAATCTGCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029975.10
CDS CCA 72 bp TTGTCTTCTTGGACCTGGCGGGAGTGGGATATGCCCTaGAGAAGCAACAGCCCATACACTGGTAGATGGGGG +
Preference number: 6 (lower is better)
Translates to: LSSWTWREWDMP*RSNSPYTGRWG
Trigger: CCCCCATCTACCAGTGTATGGGCTGTTGCTTCTCCAGGGCATATCCCACTCCCGCCAGGTCCAAGAAGACAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029975.10
ENSMUST00000108130.2
ENSMUST00000135871.8
CDS CCA 72 bp TTGGAACCAGCATTGTCTTCTTGGACCTGGCGGGAGTaGGATATGCCCTGGAGAAGCAACAGCCCATACACT +
Preference number: 6 (lower is better)
Translates to: LEPALSSWTWRE*DMPWRSNSPYT
Trigger: AGTGTATGGGCTGTTGCTTCTCCAGGGCATATCCCACTCCCGCCAGGTCCAAGAAGACAATGCTGGTTCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029975.10
ENSMUST00000108130.2
ENSMUST00000135871.8
CDS CCA 72 bp GGCCACACAGCATGTGGCCTCCGAGGTAATATTCTTTaGAACCAGCATTGTCTTCTTGGACCTGGCGGGAGT +
Preference number: 6 (lower is better)
Translates to: GHTACGLRGNIL*NQHCLLGPGGS
Trigger: ACTCCCGCCAGGTCCAAGAAGACAATGCTGGTTCCAAAGAATATTACCTCGGAGGCCACATGCTGTGTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029975.10
ENSMUST00000108130.2
ENSMUST00000135871.8
CDS CCA 72 bp ATGCCCTGGAGAAGCAACAGCCCATACACTGGTAGATaGGGGCTCCTAGCTTGGAGAAGTATTTATTTTCCT +
Preference number: 6 (lower is better)
Translates to: MPWRSNSPYTGR*GLLAWRSIYFP
Trigger: AGGAAAATAAATACTTCTCCAAGCTAGGAGCCCCCATCTACCAGTGTATGGGCTGTTGCTTCTCCAGGGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029975.10
ENSMUST00000108130.2
ENSMUST00000135871.8