Pregenerated sensors for CGA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028298Ensembl transcript IDs: ENSMUST00000029975.10, ENSMUST00000108130.2, ENSMUST00000135871.8
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGAAGTCTGGTAGGGAGGAGGTGGTGACACACAGCGCCATTGAATaGCTCGGCTCAGCAGCCGTCAGCACAGCCCTCTGCGCGCTCAGA | + |
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Preference number: 1 (lower is better) Translates to: QKSGREEVVTHSAIE*LGSAAVSTALCALR Trigger: TCTGAGCGCGCAGAGGGCTGTGCTGACGGCTGCTGAGCCGAGCCATTCAATGGCGCTGTGTGTCACCACCTCCTCCCTACCAGACTTCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029975.10 |
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| 3UTR CCA 72 bp | GGTAGGGAGGAGGTGGTGACACACAGCGCCATTGAATaGCTCGGCTCAGCAGCCGTCAGCACAGCCCTCTGC | + |
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Preference number: 3 (lower is better) Translates to: GREEVVTHSAIE*LGSAAVSTALC Trigger: GCAGAGGGCTGTGCTGACGGCTGCTGAGCCGAGCCATTCAATGGCGCTGTGTGTCACCACCTCCTCCCTACC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029975.10 |
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| 3UTR TCA 72 bp | CTGAAGCGCGTCAGAAGTCTGGTAGGGAGGAGGTGGTaGCACACAGCGCCATTGAATGGCTCGGCTCAGCAG | + |
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Preference number: 3 (lower is better) Translates to: LKRVRSLVGRRW*HTAPLNGSAQQ Trigger: CTGCTGAGCCGAGCCATTCAATGGCGCTGTGTGTCACCACCTCCTCCCTACCAGACTTCTGACGCGCTTCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029975.10 |
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| 3UTR TCA 72 bp | CATATTTCCCTAACGAGAAGAGACTGCAGATTGTACTaGAGTATAAGGGATGTAACCGTAAAGAGGCAGTGT | + |
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Preference number: 3 (lower is better) Translates to: HISLTRRDCRLY*SIRDVTVKRQC Trigger: ACACTGCCTCTTTACGGTTACATCCCTTATACTTCAGTACAATCTGCAGTCTCTTCTCGTTAGGGAAATATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029975.10 |
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| CDS-3UTR CCA 90 bp | GTAACTGAAGCGCGTCAGAAGTCTGGTAGGGAGGAGGTGGTGACACACAGCGCCTTGTCTTCTTGGACCTaGCGGGAGTGGGATATGCCC | + |
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Preference number: 4 (lower is better) Translates to: VTEARQKSGREEVVTHSALSSWT*REWDMP Trigger: GGGCATATCCCACTCCCGCCAGGTCCAAGAAGACAA...GGCGCTGTGTGTCACCACCTCCTCCCTACCAGACTTCTGACGCGCTTCAGTTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029975.10 |
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| CDS-3UTR CCA 90 bp | ACAGCGCCATTGAATGGCTCGGCTCAGCAGCCGTCAGCACAGCCCTCTGCGCGCTGGGGGCTCCTAGCTTaGAGAAGTATTTATTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: TAPLNGSAQQPSAQPSARWGLLA*RSIYFP Trigger: AGGAAAATAAATACTTCTCCAAGCTAGGAGCCCCCA...GCGCGCAGAGGGCTGTGCTGACGGCTGCTGAGCCGAGCCATTCAATGGCGCTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029975.10 |
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| CDS-3UTR GCA 90 bp | CCATTGAATGGCTCGGCTCAGCAGCCGTCAGCACAGCCCTCTGCGCGCTCAGAATGTGGCCTTAGTAAATaGTTTGGCCACACAGCATGT | + |
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Preference number: 4 (lower is better) Translates to: PLNGSAQQPSAQPSARSECGLSK*FGHTAC Trigger: ACATGCTGTGTGGCCAAAGCATTTACTAAGGCCACA...TTCTGAGCGCGCAGAGGGCTGTGCTGACGGCTGCTGAGCCGAGCCATTCAATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029975.10 |
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| CDS-3UTR GCA 90 bp | CCATTGAATGGCTCGGCTCAGCAGCCGTCAGCACAGCCCTCTGCGCGCTCAGAAGACCAGAATGACAGCTaGATATTTTCTGTAGTAATC | + |
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Preference number: 4 (lower is better) Translates to: PLNGSAQQPSAQPSARSEDQNDS*IFSVVI Trigger: GATTACTACAGAAAATATGCAGCTGTCATTCTGGTC...TTCTGAGCGCGCAGAGGGCTGTGCTGACGGCTGCTGAGCCGAGCCATTCAATGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029975.10 |
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| CDS-3UTR CCA 90 bp | AGACTGCAGATTGTACTGAAGTATAAGGGATGTAACCGTAAAGAGGCAGTGTGTGAGTGGGATATGCCCTaGAGAAGCAACAGCCCATAC | + |
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Preference number: 4 (lower is better) Translates to: RLQIVLKYKGCNRKEAVCEWDMP*RSNSPY Trigger: GTATGGGCTGTTGCTTCTCCAGGGCATATCCCACTC...ACACACTGCCTCTTTACGGTTACATCCCTTATACTTCAGTACAATCTGCAGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029975.10 |
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| CDS-3UTR TCA 90 bp | AGACTGCAGATTGTACTGAAGTATAAGGGATGTAACCGTAAAGAGGCAGTGTGTCCATCAGGAAGAGAATaGAGAATATGCAGGAACATG | + |
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Preference number: 4 (lower is better) Translates to: RLQIVLKYKGCNRKEAVCPSGRE*RICRNM Trigger: CATGTTCCTGCATATTCTTCATTCTCTTCCTGATGG...ACACACTGCCTCTTTACGGTTACATCCCTTATACTTCAGTACAATCTGCAGTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029975.10 |
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| CDS-3UTR TCA 90 bp | AGACTGCAGATTGTACTGAAGTATAAGGGATGTAACCGTAAAGAGGCAGTGTGTCATTCTGGGCAACCCTaGATAATAAAGTCTCCATCA | + |
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Preference number: 4 (lower is better) Translates to: RLQIVLKYKGCNRKEAVCHSGQP*IIKSPS Trigger: TGATGGAGACTTTATTATTCAGGGTTGCCCAGAATG...ACACACTGCCTCTTTACGGTTACATCCCTTATACTTCAGTACAATCTGCAGTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029975.10 |
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| CDS-3UTR CCA 90 bp | AGACTGCAGATTGTACTGAAGTATAAGGGATGTAACCGTAAAGAGGCAGTGTGTCGAGGTAATATTCTTTaGAACCAGCATTGTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: RLQIVLKYKGCNRKEAVCRGNIL*NQHCLL Trigger: AAGAAGACAATGCTGGTTCCAAAGAATATTACCTCG...ACACACTGCCTCTTTACGGTTACATCCCTTATACTTCAGTACAATCTGCAGTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029975.10 |
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| CDS GCA 90 bp | CTTTGGAACCAGCATTGTCTTCTTGGACCTGGCGGGAGTGGGATATaGCCTGGAGAAGCAACAGCCCATACACTGGTAGATGGGGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: LWNQHCLLGPGGSGI*PGEATAHTLVDGGS Trigger: GGAGCCCCCATCTACCAGTGTATGGGCTGTTGCTTCTCCAGGGCATATCCCACTCCCGCCAGGTCCAAGAAGACAATGCTGGTTCCAAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029975.10 ENSMUST00000108130.2 ENSMUST00000135871.8 |
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| CDS CCA 90 bp | GAACCAGCATTGTCTTCTTGGACCTGGCGGGAGTGGGATATGCCCTaGAGAAGCAACAGCCCATACACTGGTAGATGGGGGCTCCTAGCT | + |
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Preference number: 5 (lower is better) Translates to: EPALSSWTWREWDMP*RSNSPYTGRWGLLA Trigger: AGCTAGGAGCCCCCATCTACCAGTGTATGGGCTGTTGCTTCTCCAGGGCATATCCCACTCCCGCCAGGTCCAAGAAGACAATGCTGGTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029975.10 ENSMUST00000108130.2 ENSMUST00000135871.8 |
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| CDS-3UTR CAA 90 bp | CAGTGTGTAACTGAAGCGCGTCAGAAGTCTGGTAGGGAGGAGGTGGTGACACACTCTTTGGAACCAGCATaGTCTTCTTGGACCTGGCGG | + |
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Preference number: 5 (lower is better) Translates to: QCVTEARQKSGREEVVTHSLEPA*SSWTWR Trigger: CCGCCAGGTCCAAGAAGACAATGCTGGTTCCAAAGA...GTGTGTCACCACCTCCTCCCTACCAGACTTCTGACGCGCTTCAGTTACACACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029975.10 |
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| CDS CCA 90 bp | AAATGCTTTGGCCACACAGCATGTGGCCTCCGAGGTAATATTCTTTaGAACCAGCATTGTCTTCTTGGACCTGGCGGGAGTGGGATATGC | + |
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Preference number: 5 (lower is better) Translates to: KCFGHTACGLRGNIL*NQHCLLGPGGSGIC Trigger: GCATATCCCACTCCCGCCAGGTCCAAGAAGACAATGCTGGTTCCAAAGAATATTACCTCGGAGGCCACATGCTGTGTGGCCAAAGCATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029975.10 ENSMUST00000108130.2 ENSMUST00000135871.8 |
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| CDS CCA 90 bp | GAGTGGGATATGCCCTGGAGAAGCAACAGCCCATACACTGGTAGATaGGGGCTCCTAGCTTGGAGAAGTATTTATTTTCCTTTAGTTTAC | + |
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Preference number: 5 (lower is better) Translates to: EWDMPWRSNSPYTGR*GLLAWRSIYFPLVY Trigger: GTAAACTAAAGGAAAATAAATACTTCTCCAAGCTAGGAGCCCCCATCTACCAGTGTATGGGCTGTTGCTTCTCCAGGGCATATCCCACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029975.10 ENSMUST00000108130.2 ENSMUST00000135871.8 |
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| CDS-3UTR CAA 90 bp | AGACTGCAGATTGTACTGAAGTATAAGGGATGTAACCGTAAAGAGGCAGTGTGTGCCTTAGTAAATGCTTaGGCCACACAGCATGTGGCC | + |
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Preference number: 5 (lower is better) Translates to: RLQIVLKYKGCNRKEAVCALVNA*ATQHVA Trigger: GGCCACATGCTGTGTGGCCAAAGCATTTACTAAGGC...ACACACTGCCTCTTTACGGTTACATCCCTTATACTTCAGTACAATCTGCAGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029975.10 |
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| CDS-3UTR CAA 90 bp | CTGCAGATTGTACTGAAGTATAAGGGATGTAACCGTAAAGAGGCAGTGTGTAACATGGGGGCTCCTAGCTaGGAGAAGTATTTATTTTCC | + |
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Preference number: 5 (lower is better) Translates to: LQIVLKYKGCNRKEAVCNMGAPS*EKYLFS Trigger: GGAAAATAAATACTTCTCCAAGCTAGGAGCCCCCAT...GTTACACACTGCCTCTTTACGGTTACATCCCTTATACTTCAGTACAATCTGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029975.10 |
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| CDS CCA 72 bp | TTGTCTTCTTGGACCTGGCGGGAGTGGGATATGCCCTaGAGAAGCAACAGCCCATACACTGGTAGATGGGGG | + |
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Preference number: 6 (lower is better) Translates to: LSSWTWREWDMP*RSNSPYTGRWG Trigger: CCCCCATCTACCAGTGTATGGGCTGTTGCTTCTCCAGGGCATATCCCACTCCCGCCAGGTCCAAGAAGACAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029975.10 ENSMUST00000108130.2 ENSMUST00000135871.8 |
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| CDS CCA 72 bp | TTGGAACCAGCATTGTCTTCTTGGACCTGGCGGGAGTaGGATATGCCCTGGAGAAGCAACAGCCCATACACT | + |
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Preference number: 6 (lower is better) Translates to: LEPALSSWTWRE*DMPWRSNSPYT Trigger: AGTGTATGGGCTGTTGCTTCTCCAGGGCATATCCCACTCCCGCCAGGTCCAAGAAGACAATGCTGGTTCCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029975.10 ENSMUST00000108130.2 ENSMUST00000135871.8 |
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| CDS CCA 72 bp | GGCCACACAGCATGTGGCCTCCGAGGTAATATTCTTTaGAACCAGCATTGTCTTCTTGGACCTGGCGGGAGT | + |
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Preference number: 6 (lower is better) Translates to: GHTACGLRGNIL*NQHCLLGPGGS Trigger: ACTCCCGCCAGGTCCAAGAAGACAATGCTGGTTCCAAAGAATATTACCTCGGAGGCCACATGCTGTGTGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029975.10 ENSMUST00000108130.2 ENSMUST00000135871.8 |
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| CDS CCA 72 bp | ATGCCCTGGAGAAGCAACAGCCCATACACTGGTAGATaGGGGCTCCTAGCTTGGAGAAGTATTTATTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: MPWRSNSPYTGR*GLLAWRSIYFP Trigger: AGGAAAATAAATACTTCTCCAAGCTAGGAGCCCCCATCTACCAGTGTATGGGCTGTTGCTTCTCCAGGGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029975.10 ENSMUST00000108130.2 ENSMUST00000135871.8 |
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