RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CFTR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041301

Ensembl transcript IDs: ENSMUST00000045706.12, ENSMUST00000115405.9, ENSMUST00000115406.2, ENSMUST00000129452.8, ENSMUST00000140407.8

Found 368 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTCAGGTGCCCAGCCTGGAACTCTCTTTGTGGGCTAGGATCACTTaGCACAGAGCCCCAGGGATCCACCTGTCTCTGTGTCCCCAGCAC +
Preference number: 1 (lower is better)
Translates to: PQVPSLELSLWARIT*HRAPGIHLSLCPQH
Trigger: GTGCTGGGGACACAGAGACAGGTGGATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGAGTTCCAGGCTGGGCACCTGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 90 bp TCCACAGGTATTGTCCCTCAGGTGCCCAGCCTGGAACTCTCTTTGTaGGCTAGGATCACTTGCCACAGAGCCCCAGGGATCCACCTGTCT +
Preference number: 1 (lower is better)
Translates to: STGIVPQVPSLELSL*ARITCHRAPGIHLS
Trigger: AGACAGGTGGATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGAGTTCCAGGCTGGGCACCTGAGGGACAATACCTGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 90 bp GCAGTAATTTGCGTCCGAGGCTTGTGCTTGCTGGAGTGGCGGCCCTaGAAGAACCTCATCTTTTCCGAGGAGCTAATGGCCTGCTGGAAG +
Preference number: 1 (lower is better)
Translates to: AVICVRGLCLLEWRP*KNLIFSEELMACWK
Trigger: CTTCCAGCAGGCCATTAGCTCCTCGGAAAAGATGAGGTTCTTCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCAAATTACTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 90 bp TCTTTCAGAGCAGTAATTTGCGTCCGAGGCTTGTGCTTGCTGGAGTaGCGGCCCTGGAAGAACCTCATCTTTTCCGAGGAGCTAATGGCC +
Preference number: 1 (lower is better)
Translates to: SFRAVICVRGLCLLE*RPWKNLIFSEELMA
Trigger: GGCCATTAGCTCCTCGGAAAAGATGAGGTTCTTCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCAAATTACTGCTCTGAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR GCA 90 bp TCTTCTGTCTCCTCTTTCAGAGCAGTAATTTGCGTCCGAGGCTTGTaGTTGCTGGAGTGGCGGCCCTGGAAGAACCTCATCTTTTCCGAG +
Preference number: 1 (lower is better)
Translates to: SSVSSFRAVICVRGL*LLEWRPWKNLIFSE
Trigger: CTCGGAAAAGATGAGGTTCTTCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCAAATTACTGCTCTGAAAGAGGAGACAGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR GCA 90 bp CGAGGAGCTAATGGCCTGCTGGAAGATACTCTTCTCACTCAGAAGTaGCTGAAGGGAGTCGTACTGCCAGACATTGCTCTCTTCTATGAC +
Preference number: 1 (lower is better)
Translates to: RGANGLLEDTLLTQK*LKGVVLPDIALFYD
Trigger: GTCATAGAAGAGAGCAATGTCTGGCAGTACGACTCCCTTCAGGCACTTCTGAGTGAGAAGAGTATCTTCCAGCAGGCCATTAGCTCCTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 90 bp GAGCTAATGGCCTGCTGGAAGATACTCTTCTCACTCAGAAGTGCCTaGAGGGAGTCGTACTGCCAGACATTGCTCTCTTCTATGACCAAA +
Preference number: 1 (lower is better)
Translates to: ELMACWKILFSLRSA*RESYCQTLLSSMTK
Trigger: TTTGGTCATAGAAGAGAGCAATGTCTGGCAGTACGACTCCCTTCAGGCACTTCTGAGTGAGAAGAGTATCTTCCAGCAGGCCATTAGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR GCA 90 bp TTTTCATTCTGCATGGGTTCTGGGAATGGACTCAGTGCACTGAGTTaGTTCCTCAGCATCCCAGCACTAGAGACGGGTTTCTTGAACTTC +
Preference number: 1 (lower is better)
Translates to: FSFCMGSGNGLSALS*FLSIPALETGFLNF
Trigger: GAAGTTCAAGAAACCCGTCTCTAGTGCTGGGATGCTGAGGAAGCAACTCAGTGCACTGAGTCCATTCCCAGAACCCATGCAGAATGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 90 bp CGGAAGGCTCGAAGTGTCCAGAGTCCTTTTAAGCTTGTCACAAGGTaGGTGAAAATTGGACTCCTGCCTTCAGATTCCAGTTGTTTGAGC +
Preference number: 1 (lower is better)
Translates to: RKARSVQSPFKLVTR*VKIGLLPSDSSCLS
Trigger: GCTCAAACAACTGGAATCTGAAGGCAGGAGTCCAATTTTCACCCACCTTGTGACAAGCTTAAAAGGACTCTGGACACTTCGAGCCTTCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 90 bp ACTGTGCAACCAGCGAAGGCTTGTTTTAGAACTCGTCGAATGACTTaGTATGTTATGGGGTCTAGATGGGCACTGGGCTCATCAAGCAGT +
Preference number: 1 (lower is better)
Translates to: TVQPAKACFRTRRMT*YVMGSRWALGSSSS
Trigger: ACTGCTTGATGAGCCCAGTGCCCATCTAGACCCCATAACATACCAAGTCATTCGACGAGTTCTAAAACAAGCCTTCGCTGGTTGCACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR GCA 90 bp CCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTaGATTAAAAGAGAGCATGTGTTGTCTGAGAACCACACAGATGGG +
Preference number: 1 (lower is better)
Translates to: PSGGRLNLWYHLLQS*IKREHVLSENHTDG
Trigger: CCCATCTGTGTGGTTCTCAGACAACACATGCTCTCTTTTAATGCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 90 bp TCCCCAACAACTCTGTGGAGACAGTTTGAAGTACACACAGCTAGCTaGGAGCACATGAACATACTACTGCACATTTCCATGAGCATCTAC +
Preference number: 1 (lower is better)
Translates to: SPTTLWRQFEVHTAS*EHMNILLHISMSIY
Trigger: GTAGATGCTCATGGAAATGTGCAGTAGTATGTTCATGTGCTCTCAGCTAGCTGTGTGTACTTCAAACTGTCTCCACAGAGTTGTTGGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 90 bp TGTTTTAGAACTCGTCGAATGACTTGGTATGTTATGGGGTCTAGATaGGCACTGGGCTCATCAAGCAGTATGATCTTGGCCTTACTGAGA +
Preference number: 1 (lower is better)
Translates to: CFRTRRMTWYVMGSR*ALGSSSSMILALLR
Trigger: TCTCAGTAAGGCCAAGATCATACTGCTTGATGAGCCCAGTGCCCATCTAGACCCCATAACATACCAAGTCATTCGACGAGTTCTAAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR GCA 90 bp ATCCAAAATTGCTATATCTTTGGAGAATCTGTTAAGAATCCCACCTaGTTTCAGCTTGCTGATGGTCGACATAGGGGCGTGAAGAATGGA +
Preference number: 1 (lower is better)
Translates to: IQNCYIFGESVKNPT*FQLADGRHRGVKNG
Trigger: TCCATTCTTCACGCCCCTATGTCGACCATCAGCAAGCTGAAAGCAGGTGGGATTCTTAACAGATTCTCCAAAGATATAGCAATTTTGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 90 bp AGAAAAACCAGTACGCACCAAATCAGCACTAGCAGTAAGCCTTTATaGAGAGTAAAATATCGTAGGTATGTGTTCCATGTTGTCACCGGG +
Preference number: 1 (lower is better)
Translates to: RKTSTHQISTSSKPL*RVKYRRYVFHVVTG
Trigger: CCCGGTGACAACATGGAACACATACCTACGATATTTTACTCTCCATAAAGGCTTACTGCTAGTGCTGATTTGGTGCGTACTGGTTTTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 90 bp ACTGGCCTAGAACTCATTAGACAGCTAAGACTGGCTTCAACTTCATaGCCTTTTTGCTTCAGTCTCTTGAGTATTAGGATTGCACTCATG +
Preference number: 1 (lower is better)
Translates to: TGLELIRQLRLASTS*PFCFSLLSIRIALM
Trigger: CATGAGTGCAATCCTAATACTCAAGAGACTGAAGCAAAAAGGTCATGAAGTTGAAGCCAGTCTTAGCTGTCTAATGAGTTCTAGGCCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
3UTR GCA 90 bp GAGGACAAATATCATGTCTATTCTCATTTGGAACCAGCGCAAGGTTaGCAGATACATAAACCAGTTGGCAGTGTGCAAATTCAGAGCTTT +
Preference number: 1 (lower is better)
Translates to: EDKYHVYSHLEPAQG*QIHKPVGSVQIQSF
Trigger: AAAGCTCTGAATTTGCACACTGCCAACTGGTTTATGTATCTGGCAACCTTGCGCTGGTTCCAAATGAGAATAGACATGATATTTGTCCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 90 bp GTAACAACAATGAAGAAGAGGACAAATATCATGTCTATTCTCATTTaGAACCAGCGCAAGGTTGCCAGATACATAAACCAGTTGGCAGTG +
Preference number: 1 (lower is better)
Translates to: VTTMKKRTNIMSILI*NQRKVARYINQLAV
Trigger: CACTGCCAACTGGTTTATGTATCTGGCAACCTTGCGCTGGTTCCAAATGAGAATAGACATGATATTTGTCCTCTTCTTCATTGTTGTTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 90 bp GTAGTAGAGTTCACCTCCTCTAAGTCCATGAGCAGACTCCATACATaGTCGTTTTGCAATTATTTGCACTATTTTCTTCCCTCTTTCCTT +
Preference number: 1 (lower is better)
Translates to: VVEFTSSKSMSRLHT*SFCNYLHYFLPSFL
Trigger: AAGGAAAGAGGGAAGAAAATAGTGCAAATAATTGCAAAACGATCATGTATGGAGTCTGCTCATGGACTTAGAGGAGGTGAACTCTACTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 90 bp CGTAAGGTCTCAGTTAGAATTGAACTTCTTCTTTCCTCAGTAAACTaGTCAAAAGTATCATACCCCATGAGTTTCGAACTGAAGTCTGGA +
Preference number: 1 (lower is better)
Translates to: RKVSVRIELLLSSVN*SKVSYPMSFELKSG
Trigger: TCCAGACTTCAGTTCGAAACTCATGGGGTATGATACTTTTGACCAGTTTACTGAGGAAAGAAGAAGTTCAATTCTAACTGAGACCTTACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 90 bp AATGAGCATAATCCATGTAGTGGTGTGAACGTGAAATACCTACAATaGGCTCATGTGTTTGAAAACATTATTTCCAGTTGGGGGTACACT +
Preference number: 1 (lower is better)
Translates to: NEHNPCSGVNVKYLQ*AHVFENIISSWGYT
Trigger: AGTGTACCCCCAACTGGAAATAATGTTTTCAAACACATGAGCCCATTGTAGGTATTTCACGTTCACACCACTACATGGATTATGCTCATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
3UTR TCA 90 bp AGAAAAATCTGCCTTGCAATACACAAGTGGTCATTATCAACTATCTaGAGTTCAAACAATTTGACTACTGCTGGAAAGTCAGTTACCCAT +
Preference number: 1 (lower is better)
Translates to: RKICLAIHKWSLSTI*SSNNLTTAGKSVTH
Trigger: ATGGGTAACTGACTTTCCAGCAGTAGTCAAATTGTTTGAACTTCAGATAGTTGATAATGACCACTTGTGTATTGCAAGGCAGATTTTTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 90 bp GTCGATTTCCATATCAAGGAAATTATCCAGGCCACTTTATGGGACTaGAACAGTTCTTTTCCTAGGTCTTATTCTGGTAATAAGAATGTT +
Preference number: 1 (lower is better)
Translates to: VDFHIKEIIQATLWD*NSSFPRSYSGNKNV
Trigger: AACATTCTTATTACCAGAATAAGACCTAGGAAAAGAACTGTTTCAGTCCCATAAAGTGGCCTGGATAATTTCCTTGATATGGAAATCGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR GCA 90 bp AATTTGCGTCCGAGGCTTGTGCTTGCTGGAGTGGCGGCCCTGGAAGAACCTCATCTCAGTGCACTGAGTTaGTTCCTCAGCATCCCAGCA +
Preference number: 2 (lower is better)
Translates to: NLRPRLVLAGVAALEEPHLSALS*FLSIPA
Trigger: TGCTGGGATGCTGAGGAAGCAACTCAGTGCACTGAG...ATGAGGTTCTTCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCAAATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp AATTTGCGTCCGAGGCTTGTGCTTGCTGGAGTGGCGGCCCTGGAAGAACCTCATCTACATGTTAACTCCTaGACCTGGCACTGGGCTGCA +
Preference number: 2 (lower is better)
Translates to: NLRPRLVLAGVAALEEPHLHVNS*TWHWAA
Trigger: TGCAGCCCAGTGCCAGGTCCAGGAGTTAACATGTAG...ATGAGGTTCTTCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCAAATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 90 bp TCTGTCTCCTCTTTCAGAGCAGTAATTTGCGTCCGAGGCTTGTGCTaGCTGGAGTGGCGGCCCTGGAAGAACCTCATCTTTTCCGAGGAG +
Preference number: 2 (lower is better)
Translates to: SVSSFRAVICVRGLC*LEWRPWKNLIFSEE
Trigger: CTCCTCGGAAAAGATGAGGTTCTTCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCAAATTACTGCTCTGAAAGAGGAGACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR GCA 90 bp AAGCAAGAGTATATCCACAGGTATTGTCCCTCAGGTGCCCAGCCTGGAACTCTCTGGGCTAGGATCACTTaGCACAGAGCCCCAGGGATC +
Preference number: 2 (lower is better)
Translates to: KQEYIHRYCPSGAQPGTLWARIT*HRAPGI
Trigger: GATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCA...GAGAGTTCCAGGCTGGGCACCTGAGGGACAATACCTGTGGATATACTCTTGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp TCTCTTTGTGGGCTAGGATCACTTGCCACAGAGCCCCAGGGATCCACCTGTCTCTACTGCACATTTCCATaGGCATCTACCCACACAGTC +
Preference number: 2 (lower is better)
Translates to: SLCGLGSLATEPQGSTCLYCTFP*ASTHTV
Trigger: GACTGTGTGGGTAGATGCTCATGGAAATGTGCAGTA...GAGACAGGTGGATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 90 bp TCTTCTTCTGTCTCCTCTTTCAGAGCAGTAATTTGCGTCCGAGGCTaGTGCTTGCTGGAGTGGCGGCCCTGGAAGAACCTCATCTTTTCC +
Preference number: 2 (lower is better)
Translates to: SSSVSSFRAVICVRG*CLLEWRPWKNLIFS
Trigger: GGAAAAGATGAGGTTCTTCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCAAATTACTGCTCTGAAAGAGGAGACAGAAGAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp TGTGCCCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCAATGGACTCAGTGCACTaGGTTGCTTCCTCAGCATCC +
Preference number: 2 (lower is better)
Translates to: CAHQGAVLTFGTIFFKAAMDSVH*VASSAS
Trigger: GGATGCTGAGGAAGCAACTCAGTGCACTGAGTCCAT...TGCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGGGCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp AGTAAGTCTGGCGTCGGAAGGCTCGAAGTGTCCAGAGTCCTTTTAAGCTTGTCACTCAGGTGCCCAGCCTaGAACTCTCTTTGTGGGCTA +
Preference number: 2 (lower is better)
Translates to: SKSGVGRLEVSRVLLSLSLRCPA*NSLCGL
Trigger: TAGCCCACAAAGAGAGTTCCAGGCTGGGCACCTGAG...TGACAAGCTTAAAAGGACTCTGGACACTTCGAGCCTTCCGACGCCAGACTTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 90 bp GGTTTCTTGAACTTCTTCTTCTGTCTCCTCTTTCAGAGCAGTAATTaGCGTCCGAGGCTTGTGCTTGCTGGAGTGGCGGCCCTGGAAGAA +
Preference number: 2 (lower is better)
Translates to: GFLNFFFCLLFQSSN*RPRLVLAGVAALEE
Trigger: TTCTTCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCAAATTACTGCTCTGAAAGAGGAGACAGAAGAAGAAGTTCAAGAAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp CCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCATTAAACTGTCTTCTTCTGCCTaGAAATGTGGGGCCGGTGGC +
Preference number: 2 (lower is better)
Translates to: PSGGRLNLWYHLLQSCIKLSSSA*KCGAGG
Trigger: GCCACCGGCCCCACATTTCCAGGCAGAAGAAGACAG...TTTAATGCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp TCTCTTTGTGGGCTAGGATCACTTGCCACAGAGCCCCAGGGATCCACCTGTCTCAAATTTTTGATGCTGTaGTTAACGTATGCACCAGCG +
Preference number: 2 (lower is better)
Translates to: SLCGLGSLATEPQGSTCLKFLML*LTYAPA
Trigger: CGCTGGTGCATACGTTAATCACAGCATCAAAAATTT...GAGACAGGTGGATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR GCA 90 bp GACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGGGCATCCTCAGTGCACTGAGTTaGTTCCTCAGCATCCCAGCA +
Preference number: 2 (lower is better)
Translates to: DLDILNPDGLLDHQMSGILSALS*FLSIPA
Trigger: TGCTGGGATGCTGAGGAAGCAACTCAGTGCACTGAG...GATGCCCGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR GCA 90 bp TCTGAAGAGGCTCAGGGCAAGCAAAGTGTCAGCCACTCCCACGTAAATGTAAAATGGTCCTCTGAAGATTaGTGGAGCCTGAGTTGGGTG +
Preference number: 2 (lower is better)
Translates to: SEEAQGKQSVSHSHVNVKWSSED*WSLSWV
Trigger: CACCCAACTCAGGCTCCAGCAATCTTCAGAGGACCA...TTTTACATTTACGTGGGAGTGGCTGACACTTTGCTTGCCCTGAGCCTCTTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGCTGTCTTCTTCTGCCTaGAAATGTGGGGCCGGTGGC +
Preference number: 2 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSLSSSA*KCGAGG
Trigger: GCCACCGGCCCCACATTTCCAGGCAGAAGAAGACAG...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 90 bp GTGTATATGTACTTGCATGTGGAAGCAAGAGTATATCCACAGGTATaGTCCCTCAGGTGCCCAGCCTGGAACTCTCTTTGTGGGCTAGGA +
Preference number: 2 (lower is better)
Translates to: VYMYLHVEARVYPQV*SLRCPAWNSLCGLG
Trigger: TCCTAGCCCACAAAGAGAGTTCCAGGCTGGGCACCTGAGGGACAATACCTGTGGATATACTCTTGCTTCCACATGCAAGTACATATACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp AATCTAAATCTAGCAAGAAAGTACCACCCTATCTCACCCCCACCACCCCCAAAAACTAGAATTAGGCCTTaGAGCCCCACTTCCTGCTGG +
Preference number: 2 (lower is better)
Translates to: NLNLARKYHPISPPPPPKTRIRP*SPTSCW
Trigger: CCAGCAGGAAGTGGGGCTTCAAGGCCTAATTCTAGT...TTTTGGGGGTGGTGGGGGTGAGATAGGGTGGTACTTTCTTGCTAGATTTAGATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
3UTR-3UTR CCA 90 bp TCTGAAGAGGCTCAGGGCAAGCAAAGTGTCAGCCACTCCCACGTAAATGTAAAACATGGGTTCTGGGAATaGACTCAGTGCACTGAGTTG +
Preference number: 2 (lower is better)
Translates to: SEEAQGKQSVSHSHVNVKHGFWE*TQCTEL
Trigger: CAACTCAGTGCACTGAGTCCATTCCCAGAACCCATG...TTTTACATTTACGTGGGAGTGGCTGACACTTTGCTTGCCCTGAGCCTCTTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp GTCACAAGGTGGGTGAAAATTGGACTCCTGCCTTCAGATTCCAGTTGTTTGAGCCATGGGTTCTGGGAATaGACTCAGTGCACTGAGTTG +
Preference number: 2 (lower is better)
Translates to: VTRWVKIGLLPSDSSCLSHGFWE*TQCTEL
Trigger: CAACTCAGTGCACTGAGTCCATTCCCAGAACCCATG...GCTCAAACAACTGGAATCTGAAGGCAGGAGTCCAATTTTCACCCACCTTGTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp GACCAAAAATCGCTGGCAATCCAACATCGCTTCTATCCTGTGTTCACAGAGGATCTACATGTTAACTCCTaGACCTGGCACTGGGCTGCA +
Preference number: 2 (lower is better)
Translates to: DQKSLAIQHRFYPVFTEDLHVNS*TWHWAA
Trigger: TGCAGCCCAGTGCCAGGTCCAGGAGTTAACATGTAG...ATCCTCTGTGAACACAGGATAGAAGCGATGTTGGATTGCCAGCGATTTTTGGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp TGGGCACTGGGCTCATCAAGCAGTATGATCTTGGCCTTACTGAGAACTGATCGGAAGCTTGTCACAAGGTaGGTGAAAATTGGACTCCTG +
Preference number: 2 (lower is better)
Translates to: WALGSSSSMILALLRTDRKLVTR*VKIGLL
Trigger: CAGGAGTCCAATTTTCACCCACCTTGTGACAAGCTT...CCGATCAGTTCTCAGTAAGGCCAAGATCATACTGCTTGATGAGCCCAGTGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 90 bp GTTATGGGGTCTAGATGGGCACTGGGCTCATCAAGCAGTATGATCTaGGCCTTACTGAGAACTGATCGGGCCAAGCACATTAATTGCTTA +
Preference number: 2 (lower is better)
Translates to: VMGSRWALGSSSSMI*ALLRTDRAKHINCL
Trigger: TAAGCAATTAATGTGCTTGGCCCGATCAGTTCTCAGTAAGGCCAAGATCATACTGCTTGATGAGCCCAGTGCCCATCTAGACCCCATAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 90 bp TTTTTCATTCTGCATGGGTTCTGGGAATGGACTCAGTGCACTGAGTaGCTTCCTCAGCATCCCAGCACTAGAGACGGGTTTCTTGAACTT +
Preference number: 2 (lower is better)
Translates to: FFILHGFWEWTQCTE*LPQHPSTRDGFLEL
Trigger: AAGTTCAAGAAACCCGTCTCTAGTGCTGGGATGCTGAGGAAGCAACTCAGTGCACTGAGTCCATTCCCAGAACCCATGCAGAATGAAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp TCTATTCTCATTTGGAACCAGCGCAAGGTTGCCAGATACATAAACCAGTTGGCAATGGACTCAGTGCACTaGGTTGCTTCCTCAGCATCC +
Preference number: 2 (lower is better)
Translates to: SILIWNQRKVARYINQLAMDSVH*VASSAS
Trigger: GGATGCTGAGGAAGCAACTCAGTGCACTGAGTCCAT...TGCCAACTGGTTTATGTATCTGGCAACCTTGCGCTGGTTCCAAATGAGAATAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp CGTAGGTATGTGTTCCATGTTGTCACCGGGGGTATCTTGATCACATCATCAAGAAAGATTGCTGGAGCCTaGGTTGGGTGTGAACGTCAT +
Preference number: 2 (lower is better)
Translates to: RRYVFHVVTGGILITSSRKIAGA*VGCERH
Trigger: ATGACGTTCACACCCAACTCAGGCTCCAGCAATCTT...TCTTGATGATGTGATCAAGATACCCCCGGTGACAACATGGAACACATACCTACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR GCA 90 bp ACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTGGGTGGGCTAGGATCACTTaGCACAGAGCCCCAGGGATC +
Preference number: 2 (lower is better)
Translates to: TNTTFLHFRSLKDLLLSGWARIT*HRAPGI
Trigger: GATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCA...CCCAGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR GCA 90 bp AATTTGCGTCCGAGGCTTGTGCTTGCTGGAGTGGCGGCCCTGGAAGAACCTCATATGTGTATATGTACTTaGATGTGGAAGCAAGAGTAT +
Preference number: 2 (lower is better)
Translates to: NLRPRLVLAGVAALEEPHMCICT*MWKQEY
Trigger: ATACTCTTGCTTCCACATGCAAGTACATATACACAT...ATGAGGTTCTTCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCAAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR GCA 90 bp TGGCAGTGTGCAAATTCAGAGCTTTGTGGAACAGAGTTTCAAAGTAAGTCTGGCTGGTCCTCTGAAGATTaGTGGAGCCTGAGTTGGGTG +
Preference number: 2 (lower is better)
Translates to: WQCANSELCGTEFQSKSGWSSED*WSLSWV
Trigger: CACCCAACTCAGGCTCCAGCAATCTTCAGAGGACCA...GCCAGACTTACTTTGAAACTCTGTTCCACAAAGCTCTGAATTTGCACACTGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp AAAAGAGAGCATGTGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCCTCAGGTGCCCAGCCTaGAACTCTCTTTGTGGGCTA +
Preference number: 2 (lower is better)
Translates to: KREHVLSENHTDGYKIYILRCPA*NSLCGL
Trigger: TAGCCCACAAAGAGAGTTCCAGGCTGGGCACCTGAG...GATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACACATGCTCTCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp AGTCTGGACGTAGACTTTGTAGCTCAGAAAATGTCCCATAAAAATAGCTACTGCCTCAGGTGCCCAGCCTaGAACTCTCTTTGTGGGCTA +
Preference number: 2 (lower is better)
Translates to: SLDVDFVAQKMSHKNSYCLRCPA*NSLCGL
Trigger: TAGCCCACAAAGAGAGTTCCAGGCTGGGCACCTGAG...GCAGTAGCTATTTTTATGGGACATTTTCTGAGCTACAAAGTCTACGTCCAGACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp GTCACAAGGTGGGTGAAAATTGGACTCCTGCCTTCAGATTCCAGTTGTTTGAGCTCCCCAACAACTCTGTaGAGACAGTTTGAAGTACAC +
Preference number: 2 (lower is better)
Translates to: VTRWVKIGLLPSDSSCLSSPTTL*RQFEVH
Trigger: GTGTACTTCAAACTGTCTCCACAGAGTTGTTGGGGA...GCTCAAACAACTGGAATCTGAAGGCAGGAGTCCAATTTTCACCCACCTTGTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp AAAAGAGAGCATGTGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCTTCTGCCTGGAAATGTaGGGCCGGTGGCGATCATGT +
Preference number: 2 (lower is better)
Translates to: KREHVLSENHTDGYKIYIFCLEM*GRWRSC
Trigger: ACATGATCGCCACCGGCCCCACATTTCCAGGCAGAA...GATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACACATGCTCTCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR GCA 90 bp TGGGCACTGGGCTCATCAAGCAGTATGATCTTGGCCTTACTGAGAACTGATCGGGTATGTCCACTAATGTaGATGCATGTGTATATGTAC +
Preference number: 2 (lower is better)
Translates to: WALGSSSSMILALLRTDRVCPLM*MHVYMY
Trigger: GTACATATACACATGCATGCACATTAGTGGACATAC...CCGATCAGTTCTCAGTAAGGCCAAGATCATACTGCTTGATGAGCCCAGTGCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp ATAAGTGTGTCGATTTCCATATCAAGGAAATTATCCAGGCCACTTTATGGGACTTTCTGCCTGGAAATGTaGGGCCGGTGGCGATCATGT +
Preference number: 2 (lower is better)
Translates to: ISVSISISRKLSRPLYGTFCLEM*GRWRSC
Trigger: ACATGATCGCCACCGGCCCCACATTTCCAGGCAGAA...AGTCCCATAAAGTGGCCTGGATAATTTCCTTGATATGGAAATCGACACACTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp AACTCTCTTCCAAAACAGTCTCTTAAAGAGCAAGTCGCAGGCTTCACCCTTCTTGCCACTTTATGGGACTaGAACAGTTCTTTTCCTAGG +
Preference number: 2 (lower is better)
Translates to: NSLPKQSLKEQVAGFTLLATLWD*NSSFPR
Trigger: CCTAGGAAAAGAACTGTTTCAGTCCCATAAAGTGGC...AAGAAGGGTGAAGCCTGCGACTTGCTCTTTAAGAGACTGTTTTGGAAGAGAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp TCTATTCTCATTTGGAACCAGCGCAAGGTTGCCAGATACATAAACCAGTTGGCAGCCACTTTATGGGACTaGAACAGTTCTTTTCCTAGG +
Preference number: 2 (lower is better)
Translates to: SILIWNQRKVARYINQLAATLWD*NSSFPR
Trigger: CCTAGGAAAAGAACTGTTTCAGTCCCATAAAGTGGC...TGCCAACTGGTTTATGTATCTGGCAACCTTGCGCTGGTTCCAAATGAGAATAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp AAAAGAGAGCATGTGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCAAGATTGCTGGAGCCTaGGTTGGGTGTGAACGTCAT +
Preference number: 2 (lower is better)
Translates to: KREHVLSENHTDGYKIYIKIAGA*VGCERH
Trigger: ATGACGTTCACACCCAACTCAGGCTCCAGCAATCTT...GATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACACATGCTCTCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR GCA 90 bp TGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTCTCAGTGCACTGAGTTaGTTCCTCAGCATCCCAGCA +
Preference number: 2 (lower is better)
Translates to: CTNTTFLHFRSLKDLLLSLSALS*FLSIPA
Trigger: TGCTGGGATGCTGAGGAAGCAACTCAGTGCACTGAG...AGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR GCA 90 bp AACTCTCTTCCAAAACAGTCTCTTAAAGAGCAAGTCGCAGGCTTCACCCTTCTTGCCAAGCACATTAATTaGTTATGGCCATGGCTTAGC +
Preference number: 2 (lower is better)
Translates to: NSLPKQSLKEQVAGFTLLAKHIN*LWPWLS
Trigger: GCTAAGCCATGGCCATAAGCAATTAATGTGCTTGGC...AAGAAGGGTGAAGCCTGCGACTTGCTCTTTAAGAGACTGTTTTGGAAGAGAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR GCA 90 bp AATACCTACAATGGGCTCATGTGTTTGAAAACATTATTTCCAGTTGGGGGTACACCATCTTCCCATTCCTaGCCCTCCTTTGCCAAGATG +
Preference number: 2 (lower is better)
Translates to: NTYNGLMCLKTLFPVGGTPSSHS*PSFAKM
Trigger: CATCTTGGCAAAGGAGGGGCAGGAATGGGAAGATGG...TGTACCCCCAACTGGAAATAATGTTTTCAAACACATGAGCCCATTGTAGGTATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
3UTR-3UTR CCA 90 bp AATTTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGCTGGAACTCTCTTTGTaGGCTAGGATCACTTGCCAC +
Preference number: 2 (lower is better)
Translates to: NFQDLDILNPDGLLDHQMLELSL*ARITCH
Trigger: GTGGCAAGTGATCCTAGCCCACAAAGAGAGTTCCAG...CATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp TGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTCTACATGTTAACTCCTaGACCTGGCACTGGGCTGCA +
Preference number: 2 (lower is better)
Translates to: CTNTTFLHFRSLKDLLLSLHVNS*TWHWAA
Trigger: TGCAGCCCAGTGCCAGGTCCAGGAGTTAACATGTAG...AGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp GACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGGGCATCCTTTCCTCAGTAAACTaGTCAAAAGTATCATACCCC +
Preference number: 2 (lower is better)
Translates to: DLDILNPDGLLDHQMSGILSSVN*SKVSYP
Trigger: GGGGTATGATACTTTTGACCAGTTTACTGAGGAAAG...GATGCCCGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 90 bp ATTCTCATTTGGAACCAGCGCAAGGTTGCCAGATACATAAACCAGTaGGCAGTGTGCAAATTCAGAGCTTTGTGGAACAGAGTTTCAAAG +
Preference number: 2 (lower is better)
Translates to: ILIWNQRKVARYINQ*AVCKFRALWNRVSK
Trigger: CTTTGAAACTCTGTTCCACAAAGCTCTGAATTTGCACACTGCCAACTGGTTTATGTATCTGGCAACCTTGCGCTGGTTCCAAATGAGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp ACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTGGGTACTGCACATTTCCATaGGCATCTACCCACACAGTC +
Preference number: 2 (lower is better)
Translates to: TNTTFLHFRSLKDLLLSGYCTFP*ASTHTV
Trigger: GACTGTGTGGGTAGATGCTCATGGAAATGTGCAGTA...CCCAGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp AAAAGAGAGCATGTGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCAGCCTGAGTTGGGTGTaGACGTCATCAGATCCAAAA +
Preference number: 2 (lower is better)
Translates to: KREHVLSENHTDGYKIYISLSWV*TSSDPK
Trigger: TTTTGGATCTGATGACGTTCACACCCAACTCAGGCT...GATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACACATGCTCTCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp TGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTCATGGGTTCTGGGAATaGACTCAGTGCACTGAGTTG +
Preference number: 2 (lower is better)
Translates to: CTNTTFLHFRSLKDLLLSHGFWE*TQCTEL
Trigger: CAACTCAGTGCACTGAGTCCATTCCCAGAACCCATG...AGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp TGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTCTGGAACTCTCTTTGTaGGCTAGGATCACTTGCCAC +
Preference number: 2 (lower is better)
Translates to: CTNTTFLHFRSLKDLLLSLELSL*ARITCH
Trigger: GTGGCAAGTGATCCTAGCCCACAAAGAGAGTTCCAG...AGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp GACCAAAAATCGCTGGCAATCCAACATCGCTTCTATCCTGTGTTCACAGAGGATCAATTTGACTACTGCTaGAAAGTCAGTTACCCATAC +
Preference number: 2 (lower is better)
Translates to: DQKSLAIQHRFYPVFTEDQFDYC*KVSYPY
Trigger: GTATGGGTAACTGACTTTCCAGCAGTAGTCAAATTG...ATCCTCTGTGAACACAGGATAGAAGCGATGTTGGATTGCCAGCGATTTTTGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 90 bp TCTAATACGGCATTTCCATCATCCATGTATTTCACAGTAAGGTCTTaGACAACCATTTCGCCTCCAGAGGGCCAGATATCACTTTTCTTC +
Preference number: 2 (lower is better)
Translates to: SNTAFPSSMYFTVRS*TTISPPEGQISLFF
Trigger: GAAGAAAAGTGATATCTGGCCCTCTGGAGGCGAAATGGTTGTCAAAGACCTTACTGTGAAATACATGGATGATGGAAATGCCGTATTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGGAAGTTCAAACAATTTaGCTACTGCTGGAAAGTCAG +
Preference number: 2 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSEVQTI*LLLESQ
Trigger: CTGACTTTCCAGCAGTAGTCAAATTGTTTGAACTTC...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp ATGACCAAAAATCGCTGGCAATCCAACATCGCTTCTATCCTGTGTTCACAGAGGATATGTACTTGCATGTaGAAGCAAGAGTATATCCAC +
Preference number: 2 (lower is better)
Translates to: MTKNRWQSNIASILCSQRICTCM*KQEYIH
Trigger: GTGGATATACTCTTGCTTCCACATGCAAGTACATAT...CCTCTGTGAACACAGGATAGAAGCGATGTTGGATTGCCAGCGATTTTTGGTCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGCAATTTGACTACTGCTaGAAAGTCAGTTACCCATAC +
Preference number: 2 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSQFDYC*KVSYPY
Trigger: GTATGGGTAACTGACTTTCCAGCAGTAGTCAAATTG...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp TGGCAGTGTGCAAATTCAGAGCTTTGTGGAACAGAGTTTCAAAGTAAGTCTGGCCAATTTGACTACTGCTaGAAAGTCAGTTACCCATAC +
Preference number: 2 (lower is better)
Translates to: WQCANSELCGTEFQSKSGQFDYC*KVSYPY
Trigger: GTATGGGTAACTGACTTTCCAGCAGTAGTCAAATTG...GCCAGACTTACTTTGAAACTCTGTTCCACAAAGCTCTGAATTTGCACACTGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp GCTCTCTTCTATGACCAAAAATCGCTGGCAATCCAACATCGCTTCTATCCTGTGATTCTAACATTTGCTTaGAATGGGGCAGACAATGTA +
Preference number: 2 (lower is better)
Translates to: ALFYDQKSLAIQHRFYPVILTFA*NGADNV
Trigger: TACATTGTCTGCCCCATTCCAAGCAAATGTTAGAAT...CACAGGATAGAAGCGATGTTGGATTGCCAGCGATTTTTGGTCATAGAAGAGAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp ATGACCAAAAATCGCTGGCAATCCAACATCGCTTCTATCCTGTGTTCACAGAGGAGCAGTAAGCCTTTATaGAGAGTAAAATATCGTAGG +
Preference number: 2 (lower is better)
Translates to: MTKNRWQSNIASILCSQRSSKPL*RVKYRR
Trigger: CCTACGATATTTTACTCTCCATAAAGGCTTACTGCT...CCTCTGTGAACACAGGATAGAAGCGATGTTGGATTGCCAGCGATTTTTGGTCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp CCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCATTAAAAGCAGTAAGCCTTTATaGAGAGTAAAATATCGTAGG +
Preference number: 2 (lower is better)
Translates to: PSGGRLNLWYHLLQSCIKSSKPL*RVKYRR
Trigger: CCTACGATATTTTACTCTCCATAAAGGCTTACTGCT...TTTAATGCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 90 bp GGTAACAACAATGAAGAAGAGGACAAATATCATGTCTATTCTCATTaGGAACCAGCGCAAGGTTGCCAGATACATAAACCAGTTGGCAGT +
Preference number: 2 (lower is better)
Translates to: GNNNEEEDKYHVYSH*EPAQGCQIHKPVGS
Trigger: ACTGCCAACTGGTTTATGTATCTGGCAACCTTGCGCTGGTTCCAAATGAGAATAGACATGATATTTGTCCTCTTCTTCATTGTTGTTACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp TGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTCAGATTCCAGTTGTTTaGGCTGCTGTGCTGTATGAA +
Preference number: 2 (lower is better)
Translates to: CTNTTFLHFRSLKDLLLSQIPVV*AAVLYE
Trigger: TTCATACAGCACAGCAGCTCAAACAACTGGAATCTG...AGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGATTCTAACATTTGCTTaGAATGGGGCAGACAATGTA +
Preference number: 2 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSILTFA*NGADNV
Trigger: TACATTGTCTGCCCCATTCCAAGCAAATGTTAGAAT...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp TGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTATGTCTATTCTCATTTaGAACCAGCGCAAGGTTGCC +
Preference number: 2 (lower is better)
Translates to: CTNTTFLHFRSLKDLLLSMSILI*NQRKVA
Trigger: GGCAACCTTGCGCTGGTTCCAAATGAGAATAGACAT...AGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp AAAAGAGAGCATGTGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCGAAGTTCAAACAATTTaGCTACTGCTGGAAAGTCAG +
Preference number: 2 (lower is better)
Translates to: KREHVLSENHTDGYKIYIEVQTI*LLLESQ
Trigger: CTGACTTTCCAGCAGTAGTCAAATTGTTTGAACTTC...GATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACACATGCTCTCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp GCACTAGTTTGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGATTAACCAGCTGTACTaGACAATAAGCCGAATGACT +
Preference number: 2 (lower is better)
Translates to: ALVCTNTTFLHFRSLKDLINQLY*TISRMT
Trigger: AGTCATTCGGCTTATTGTTCAGTACAGCTGGTTAAT...CAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCAAACTAGTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp GCAATACATATCTTAGAGGAAAGTAAGTTGGGCTTTGAGTTATATAAGACACTGAGCCTGAGTTGGGTGTaGACGTCATCAGATCCAAAA +
Preference number: 2 (lower is better)
Translates to: AIHILEESKLGFELYKTLSLSWV*TSSDPK
Trigger: TTTTGGATCTGATGACGTTCACACCCAACTCAGGCT...CAGTGTCTTATATAACTCAAAGCCCAACTTACTTTCCTCTAAGATATGTATTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp AAGCCAAGTAAGACTTATTACTCCCTCCAATTCTTGCCCAGAAAAACTCTTCTAATCCTAGGGGGTCCTTaGCATGTTTACATTAACTCA +
Preference number: 2 (lower is better)
Translates to: KPSKTYYSLQFLPRKTLLILGGP*HVYINS
Trigger: TGAGTTAATGTAAACATGTCAAGGACCCCCTAGGAT...TAGAAGAGTTTTTCTGGGCAAGAATTGGAGGGAGTAATAAGTCTTACTTGGCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
3UTR-3UTR GCA 90 bp TTGAACTCTCTTCCAAAACAGTCTCTTAAAGAGCAAGTCGCAGGCTTCACCCTTATGTGTATATGTACTTaGATGTGGAAGCAAGAGTAT +
Preference number: 2 (lower is better)
Translates to: LNSLPKQSLKEQVAGFTLMCICT*MWKQEY
Trigger: ATACTCTTGCTTCCACATGCAAGTACATATACACAT...AAGGGTGAAGCCTGCGACTTGCTCTTTAAGAGACTGTTTTGGAAGAGAGTTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 90 bp GATCACCAGATGTCGGGCATCTTTCAATCAATACCACCCAGTATTTaGTATAATATTCTAACATTTGCTTGGAATGGGGCAGACAATGTA +
Preference number: 2 (lower is better)
Translates to: DHQMSGIFQSIPPSI*YNILTFAWNGADNV
Trigger: TACATTGTCTGCCCCATTCCAAGCAAATGTTAGAATATTATACAAAATACTGGGTGGTATTGATTGAAAGATGCCCGACATCTGGTGATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 90 bp TGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTaGCTTTCTGGGAACATAAGTGTGTCGATTTCCATATCAAGGAAA +
Preference number: 2 (lower is better)
Translates to: CTNTTFLHFRSLKDL*LSGNISVSISISRK
Trigger: TTTCCTTGATATGGAAATCGACACACTTATGTTCCCAGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp ACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACAACATGAAGTTGAATGAAGTTCAAACAATTTaGCTACTGCTGGAAAGTCAG +
Preference number: 2 (lower is better)
Translates to: TQMGTRFTSARLHNMKLNEVQTI*LLLESQ
Trigger: CTGACTTTCCAGCAGTAGTCAAATTGTTTGAACTTC...ATTCAACTTCATGTTGTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp ACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACAACATGAAGTTGAATAAATTTTTGATGCTGTaGTTAACGTATGCACCAGCG +
Preference number: 2 (lower is better)
Translates to: TQMGTRFTSARLHNMKLNKFLML*LTYAPA
Trigger: CGCTGGTGCATACGTTAATCACAGCATCAAAAATTT...ATTCAACTTCATGTTGTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp AATTTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGATATGTACTTGCATGTaGAAGCAAGAGTATATCCAC +
Preference number: 2 (lower is better)
Translates to: NFQDLDILNPDGLLDHQMICTCM*KQEYIH
Trigger: GTGGATATACTCTTGCTTCCACATGCAAGTACATAT...CATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAAATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp AAAAGAGAGCATGTGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCATTCTAACATTTGCTTaGAATGGGGCAGACAATGTA +
Preference number: 2 (lower is better)
Translates to: KREHVLSENHTDGYKIYIILTFA*NGADNV
Trigger: TACATTGTCTGCCCCATTCCAAGCAAATGTTAGAAT...GATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACACATGCTCTCTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp ACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACAACATGAAGTTGAATAGCAGACTCCATACATaGTCGTTTTGCAATTATTTG +
Preference number: 2 (lower is better)
Translates to: TQMGTRFTSARLHNMKLNSRLHT*SFCNYL
Trigger: CAAATAATTGCAAAACGATCATGTATGGAGTCTGCT...ATTCAACTTCATGTTGTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp TGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTAGCAGACTCCATACATaGTCGTTTTGCAATTATTTG +
Preference number: 2 (lower is better)
Translates to: CTNTTFLHFRSLKDLLLSSRLHT*SFCNYL
Trigger: CAAATAATTGCAAAACGATCATGTATGGAGTCTGCT...AGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp ACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACAACATGAAGTTGAATCCATATGAACGTTTTTaGACTCTCTTCCAAAACAGT +
Preference number: 2 (lower is better)
Translates to: TQMGTRFTSARLHNMKLNPYERF*TLFQNS
Trigger: ACTGTTTTGGAAGAGAGTTCAAAAACGTTCATATGG...ATTCAACTTCATGTTGTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp ATTCTTGCCCAGAAAAACTCTTCTAAAAACAGATCTGGTAACAAGCCCAGAACAATGGGCTCATGTGTTTaGAAACATTATTTCCAGTTG +
Preference number: 2 (lower is better)
Translates to: ILAQKNSSKNRSGNKPRTMGSCV*KHYFQL
Trigger: CAACTGGAAATAATGTTTTCAAACACATGAGCCCAT...TGTTCTGGGCTTGTTACCAGATCTGTTTTTAGAAGAGTTTTTCTGGGCAAGAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
3UTR-3UTR GCA 90 bp ATAAGTGTGTCGATTTCCATATCAAGGAAATTATCCAGGCCACTTTATGGGACTGTATGTCCACTAATGTaGATGCATGTGTATATGTAC +
Preference number: 2 (lower is better)
Translates to: ISVSISISRKLSRPLYGTVCPLM*MHVYMY
Trigger: GTACATATACACATGCATGCACATTAGTGGACATAC...AGTCCCATAAAGTGGCCTGGATAATTTCCTTGATATGGAAATCGACACACTTAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR TCA 90 bp GCAATACATATCTTAGAGGAAAGTAAGTTGGGCTTTGAGTTATATAAGACACTGATTAACCAGCTGTACTaGACAATAAGCCGAATGACT +
Preference number: 2 (lower is better)
Translates to: AIHILEESKLGFELYKTLINQLY*TISRMT
Trigger: AGTCATTCGGCTTATTGTTCAGTACAGCTGGTTAAT...CAGTGTCTTATATAACTCAAAGCCCAACTTACTTTCCTCTAAGATATGTATTGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CCA 90 bp GCAATACATATCTTAGAGGAAAGTAAGTTGGGCTTTGAGTTATATAAGACACTGATATGTACTTGCATGTaGAAGCAAGAGTATATCCAC +
Preference number: 2 (lower is better)
Translates to: AIHILEESKLGFELYKTLICTCM*KQEYIH
Trigger: GTGGATATACTCTTGCTTCCACATGCAAGTACATAT...CAGTGTCTTATATAACTCAAAGCCCAACTTACTTTCCTCTAAGATATGTATTGC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 72 bp TGCGTCCGAGGCTTGTGCTTGCTGGAGTGGCGGCCCTaGAAGAACCTCATCTTTTCCGAGGAGCTAATGGCC +
Preference number: 3 (lower is better)
Translates to: CVRGLCLLEWRP*KNLIFSEELMA
Trigger: GGCCATTAGCTCCTCGGAAAAGATGAGGTTCTTCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp CAGCGGCAAACCTCTGAAGAGGCTCAGGGCAAGCAAAGTGTCAGCCACTCCCACGTATATCCACAGGTATaGTCCCTCAGGTGCCCAGCC +
Preference number: 3 (lower is better)
Translates to: QRQTSEEAQGKQSVSHSHVYPQV*SLRCPA
Trigger: GGCTGGGCACCTGAGGGACAATACCTGTGGATATAC...GTGGGAGTGGCTGACACTTTGCTTGCCCTGAGCCTCTTCAGAGGTTTGCCGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR GCA 72 bp CCCAGCCTGGAACTCTCTTTGTGGGCTAGGATCACTTaGCACAGAGCCCCAGGGATCCACCTGTCTCTGTGT +
Preference number: 3 (lower is better)
Translates to: PSLELSLWARIT*HRAPGIHLSLC
Trigger: ACACAGAGACAGGTGGATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGAGTTCCAGGCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 72 bp ATTGTCCCTCAGGTGCCCAGCCTGGAACTCTCTTTGTaGGCTAGGATCACTTGCCACAGAGCCCCAGGGATC +
Preference number: 3 (lower is better)
Translates to: IVPQVPSLELSL*ARITCHRAPGI
Trigger: GATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGAGTTCCAGGCTGGGCACCTGAGGGACAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp AATTTGCGTCCGAGGCTTGTGCTTGCTGGAGTGGCGGCCCTGGAAGAACCTCATAACGACTGTTTGGGTTaGCTCCACGGGGCAGAGGAA +
Preference number: 3 (lower is better)
Translates to: NLRPRLVLAGVAALEEPHNDCLG*LHGAEE
Trigger: TTCCTCTGCCCCGTGGAGCAAACCCAAACAGTCGTT...ATGAGGTTCTTCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCAAATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 72 bp GATCCAAAACAGACTGTCTTCTTCTGCCTGGAAATGTaGGGCCGGTGGCGATCATGTTGCTGCGCGGCAGAG +
Preference number: 3 (lower is better)
Translates to: DPKQTVFFCLEM*GRWRSCCCAAE
Trigger: CTCTGCCGCGCAGCAACATGATCGCCACCGGCCCCACATTTCCAGGCAGAAGAAGACAGTCTGTTTTGGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 72 bp GCAGTAATTTGCGTCCGAGGCTTGTGCTTGCTGGAGTaGCGGCCCTGGAAGAACCTCATCTTTTCCGAGGAG +
Preference number: 3 (lower is better)
Translates to: AVICVRGLCLLE*RPWKNLIFSEE
Trigger: CTCCTCGGAAAAGATGAGGTTCTTCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCAAATTACTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR GCA 72 bp TCCTCTTTCAGAGCAGTAATTTGCGTCCGAGGCTTGTaGTTGCTGGAGTGGCGGCCCTGGAAGAACCTCATC +
Preference number: 3 (lower is better)
Translates to: SSFRAVICVRGL*LLEWRPWKNLI
Trigger: GATGAGGTTCTTCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCAAATTACTGCTCTGAAAGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp TCTCTTTGTGGGCTAGGATCACTTGCCACAGAGCCCCAGGGATCCACCTGTCTCGCCTTCAGATTCCAGTaGTTTGAGCTGCTGTGCTGT +
Preference number: 3 (lower is better)
Translates to: SLCGLGSLATEPQGSTCLAFRFQ*FELLCC
Trigger: ACAGCACAGCAGCTCAAACAACTGGAATCTGAAGGC...GAGACAGGTGGATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR GCA 72 bp TGCATGGGTTCTGGGAATGGACTCAGTGCACTGAGTTaGTTCCTCAGCATCCCAGCACTAGAGACGGGTTTC +
Preference number: 3 (lower is better)
Translates to: CMGSGNGLSALS*FLSIPALETGF
Trigger: GAAACCCGTCTCTAGTGCTGGGATGCTGAGGAAGCAACTCAGTGCACTGAGTCCATTCCCAGAACCCATGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 72 bp GTATATCCACAGGTATTGTCCCTCAGGTGCCCAGCCTaGAACTCTCTTTGTGGGCTAGGATCACTTGCCACA +
Preference number: 3 (lower is better)
Translates to: VYPQVLSLRCPA*NSLCGLGSLAT
Trigger: TGTGGCAAGTGATCCTAGCCCACAAAGAGAGTTCCAGGCTGGGCACCTGAGGGACAATACCTGTGGATATAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp TCTGAAGAGGCTCAGGGCAAGCAAAGTGTCAGCCACTCCCACGTAAATGTAAAAACTCAGTGCACTGAGTaGCTTCCTCAGCATCCCAGC +
Preference number: 3 (lower is better)
Translates to: SEEAQGKQSVSHSHVNVKTQCTE*LPQHPS
Trigger: GCTGGGATGCTGAGGAAGCAACTCAGTGCACTGAGT...TTTTACATTTACGTGGGAGTGGCTGACACTTTGCTTGCCCTGAGCCTCTTCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp CAGCGGCAAACCTCTGAAGAGGCTCAGGGCAAGCAAAGTGTCAGCCACTCCCACCATGTGTATATGTACTaGCATGTGGAAGCAAGAGTA +
Preference number: 3 (lower is better)
Translates to: QRQTSEEAQGKQSVSHSHHVYMY*HVEARV
Trigger: TACTCTTGCTTCCACATGCAAGTACATATACACATG...GTGGGAGTGGCTGACACTTTGCTTGCCCTGAGCCTCTTCAGAGGTTTGCCGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp CCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCATTAAAACTCAGTGCACTGAGTaGCTTCCTCAGCATCCCAGC +
Preference number: 3 (lower is better)
Translates to: PSGGRLNLWYHLLQSCIKTQCTE*LPQHPS
Trigger: GCTGGGATGCTGAGGAAGCAACTCAGTGCACTGAGT...TTTAATGCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp TGTGCCCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCAGGACAGTCTCTTTTCTaGGAGATCATCAGACTCTCC +
Preference number: 3 (lower is better)
Translates to: CAHQGAVLTFGTIFFKAAGQSLF*EIIRLS
Trigger: GGAGAGTCTGATGATCTCCAAGAAAAGAGACTGTCC...TGCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGGGCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp TCTCTTTGTGGGCTAGGATCACTTGCCACAGAGCCCCAGGGATCCACCTGTCTCCCACTGTTAACAGGGTaGTTTTTAAGCAACCATAAC +
Preference number: 3 (lower is better)
Translates to: SLCGLGSLATEPQGSTCLPLLTG*FLSNHN
Trigger: GTTATGGTTGCTTAAAAACAACCCTGTTAACAGTGG...GAGACAGGTGGATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 72 bp ACTCGTCGAATGACTTGGTATGTTATGGGGTCTAGATaGGCACTGGGCTCATCAAGCAGTATGATCTTGGCC +
Preference number: 3 (lower is better)
Translates to: TRRMTWYVMGSR*ALGSSSSMILA
Trigger: GGCCAAGATCATACTGCTTGATGAGCCCAGTGCCCATCTAGACCCCATAACATACCAAGTCATTCGACGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 72 bp CCAGCGAAGGCTTGTTTTAGAACTCGTCGAATGACTTaGTATGTTATGGGGTCTAGATGGGCACTGGGCTCA +
Preference number: 3 (lower is better)
Translates to: PAKACFRTRRMT*YVMGSRWALGS
Trigger: TGAGCCCAGTGCCCATCTAGACCCCATAACATACCAAGTCATTCGACGAGTTCTAAAACAAGCCTTCGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 72 bp TGCAACCAGCGAAGGCTTGTTTTAGAACTCGTCGAATaGCTTGGTATGTTATGGGGTCTAGATGGGCACTGG +
Preference number: 3 (lower is better)
Translates to: CNQRRLVLELVE*LGMLWGLDGHW
Trigger: CCAGTGCCCATCTAGACCCCATAACATACCAAGTCATTCGACGAGTTCTAAAACAAGCCTTCGCTGGTTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR GCA 72 bp GTTAACTCCTGGACCTGGCACTGGGCTGCACTAGTTTaGACTAACACAACCTTCCTTCACTTCAGAAGTCTT +
Preference number: 3 (lower is better)
Translates to: VNSWTWHWAALV*TNTTFLHFRSL
Trigger: AAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCAAACTAGTGCAGCCCAGTGCCAGGTCCAGGAGTTAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR GCA 72 bp TTTTTCATTCTGCATGGGTTCTGGGAATGGACTCAGTaGACTGAGTTGCTTCCTCAGCATCCCAGCACTAGA +
Preference number: 3 (lower is better)
Translates to: FFILHGFWEWTQ*TELLPQHPSTR
Trigger: TCTAGTGCTGGGATGCTGAGGAAGCAACTCAGTGCACTGAGTCCATTCCCAGAACCCATGCAGAATGAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp ATGACCAAAAATCGCTGGCAATCCAACATCGCTTCTATCCTGTGTTCACAGAGGGCCTTCAGATTCCAGTaGTTTGAGCTGCTGTGCTGT +
Preference number: 3 (lower is better)
Translates to: MTKNRWQSNIASILCSQRAFRFQ*FELLCC
Trigger: ACAGCACAGCAGCTCAAACAACTGGAATCTGAAGGC...CCTCTGTGAACACAGGATAGAAGCGATGTTGGATTGCCAGCGATTTTTGGTCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp ATGTGCCCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCTATTCTAACATTTGCTaGGAATGGGGCAGACAATGT +
Preference number: 3 (lower is better)
Translates to: MCPSGGRLNLWYHLLQSCYSNIC*EWGRQC
Trigger: ACATTGTCTGCCCCATTCCAAGCAAATGTTAGAATA...GCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGGGCACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp GGCAGTGTGCAAATTCAGAGCTTTGTGGAACAGAGTTTCAAAGTAAGTCTGGCGGGACAGTCTCTTTTCTaGGAGATCATCAGACTCTCC +
Preference number: 3 (lower is better)
Translates to: GSVQIQSFVEQSFKVSLAGQSLF*EIIRLS
Trigger: GGAGAGTCTGATGATCTCCAAGAAAAGAGACTGTCC...CGCCAGACTTACTTTGAAACTCTGTTCCACAAAGCTCTGAATTTGCACACTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp GCTCTCTTCTATGACCAAAAATCGCTGGCAATCCAACATCGCTTCTATCCTGTGCATGTCTATTCTCATTaGGAACCAGCGCAAGGTTGC +
Preference number: 3 (lower is better)
Translates to: ALFYDQKSLAIQHRFYPVHVYSH*EPAQGC
Trigger: GCAACCTTGCGCTGGTTCCAAATGAGAATAGACATG...CACAGGATAGAAGCGATGTTGGATTGCCAGCGATTTTTGGTCATAGAAGAGAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 72 bp GAAGGGAGTCGTACTGCCAGACATTGCTCTCTTCTATaGCCAAAAATCGCTGGCAATCCAACATCGCTTCTA +
Preference number: 3 (lower is better)
Translates to: EGSRTARHCSLL*PKIAGNPTSLL
Trigger: TAGAAGCGATGTTGGATTGCCAGCGATTTTTGGTCATAGAAGAGAGCAATGTCTGGCAGTACGACTCCCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR GCA 72 bp TTCCTGTGCAAAATTTTTGATGCTGTGATTAACGTATaGACCAGCGGCAAACCTCTGAAGAGGCTCAGGGCA +
Preference number: 3 (lower is better)
Translates to: FLCKIFDAVINV*TSGKPLKRLRA
Trigger: TGCCCTGAGCCTCTTCAGAGGTTTGCCGCTGGTGCATACGTTAATCACAGCATCAAAAATTTTGCACAGGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR GCA 72 bp TGCTATATCTTTGGAGAATCTGTTAAGAATCCCACCTaGTTTCAGCTTGCTGATGGTCGACATAGGGGCGTG +
Preference number: 3 (lower is better)
Translates to: CYIFGESVKNPT*FQLADGRHRGV
Trigger: CACGCCCCTATGTCGACCATCAGCAAGCTGAAAGCAGGTGGGATTCTTAACAGATTCTCCAAAGATATAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR GCA 72 bp CCATCCACAAGGGTAAAGTTGAGCTGTCCAGGAAACTaGTCTATTACAGACTTGAGTCCAACCTCATCTGCA +
Preference number: 3 (lower is better)
Translates to: PSTRVKLSCPGN*SITDLSPTSSA
Trigger: TGCAGATGAGGTTGGACTCAAGTCTGTAATAGAGCAGTTTCCTGGACAGCTCAACTTTACCCTTGTGGATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 72 bp CGAAGTGTCCAGAGTCCTTTTAAGCTTGTCACAAGGTaGGTGAAAATTGGACTCCTGCCTTCAGATTCCAGT +
Preference number: 3 (lower is better)
Translates to: RSVQSPFKLVTR*VKIGLLPSDSS
Trigger: ACTGGAATCTGAAGGCAGGAGTCCAATTTTCACCCACCTTGTGACAAGCTTAAAAGGACTCTGGACACTTCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp ACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACAACATGAAGTTGAATACTCAGTGCACTGAGTaGCTTCCTCAGCATCCCAGC +
Preference number: 3 (lower is better)
Translates to: TQMGTRFTSARLHNMKLNTQCTE*LPQHPS
Trigger: GCTGGGATGCTGAGGAAGCAACTCAGTGCACTGAGT...ATTCAACTTCATGTTGTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp ACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACAACATGAAGTTGAATGTATATCCACAGGTATaGTCCCTCAGGTGCCCAGCC +
Preference number: 3 (lower is better)
Translates to: TQMGTRFTSARLHNMKLNVYPQV*SLRCPA
Trigger: GGCTGGGCACCTGAGGGACAATACCTGTGGATATAC...ATTCAACTTCATGTTGTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp ATGTGCCCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCAGTCTTAAAGATCTGTaGCTTTCTGGGAACATAAGT +
Preference number: 3 (lower is better)
Translates to: MCPSGGRLNLWYHLLQSCSLKDL*LSGNIS
Trigger: ACTTATGTTCCCAGAAAGCAACAGATCTTTAAGACT...GCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGGGCACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 72 bp AATAGAAGTTCTGGTCCTCTGAAGATTGCTGGAGCCTaGGTTGGGTGTGAACGTCATCAGATCCAAAACAGA +
Preference number: 3 (lower is better)
Translates to: NRSSGPLKIAGA*VGCERHQIQNR
Trigger: TCTGTTTTGGATCTGATGACGTTCACACCCAACTCAGGCTCCAGCAATCTTCAGAGGACCAGAACTTCTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 72 bp ACTAAGGAGATTTTTCGAATAGAAGTTCTGGTCCTCTaGAGATTGCTGGAGCCTGAGTTGGGTGTGAACGTC +
Preference number: 3 (lower is better)
Translates to: TKEIFRIEVLVL*RLLEPELGVNV
Trigger: GACGTTCACACCCAACTCAGGCTCCAGCAATCTTCAGAGGACCAGAACTTCTATTCGAAAAATCTCCTTAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 72 bp GTGTCCAGAGTCCTTTTAAGCTTGTCACAAGGTGGGTaGAAATTGGACTCCTGCCTTCAGATTCCAGTTGTT +
Preference number: 3 (lower is better)
Translates to: VSRVLLSLSQGG*KLDSCLQIPVV
Trigger: AACAACTGGAATCTGAAGGCAGGAGTCCAATTTTCACCCACCTTGTGACAAGCTTAAAAGGACTCTGGACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 72 bp AAGTTGATGTGCCCATCAGGGGGCCGTCTTAACCTTTaGTACCATCTTCTTCAAAGCTGCATTAAAAGAGAG +
Preference number: 3 (lower is better)
Translates to: KLMCPSGGRLNL*YHLLQSCIKRE
Trigger: CTCTCTTTTAATGCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGGGCACATCAACTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 72 bp TGCCAGACATTGCTCTCTTCTATGACCAAAAATCGCTaGCAATCCAACATCGCTTCTATCCTGTGTTCACAG +
Preference number: 3 (lower is better)
Translates to: CQTLLSSMTKNR*QSNIASILCSQ
Trigger: CTGTGAACACAGGATAGAAGCGATGTTGGATTGCCAGCGATTTTTGGTCATAGAAGAGAGCAATGTCTGGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp GACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGGGCATCTCAGAAAAATCTGCCTaGCAATACACAAGTGGTCAT +
Preference number: 3 (lower is better)
Translates to: DLDILNPDGLLDHQMSGISEKSA*QYTSGH
Trigger: ATGACCACTTGTGTATTGCAAGGCAGATTTTTCTGA...GATGCCCGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp TCTGAAGAGGCTCAGGGCAAGCAAAGTGTCAGCCACTCCCACGTAAATGTAAAAAGGTCTCAGTTAGAATaGAACTTCTTCTTTCCTCAG +
Preference number: 3 (lower is better)
Translates to: SEEAQGKQSVSHSHVNVKRSQLE*NFFFPQ
Trigger: CTGAGGAAAGAAGAAGTTCAATTCTAACTGAGACCT...TTTTACATTTACGTGGGAGTGGCTGACACTTTGCTTGCCCTGAGCCTCTTCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp AATCTAAATCTAGCAAGAAAGTACCACCCTATCTCACCCCCACCACCCCCAAAATACTCCCTCCAATTCTaGCCCAGAAAAACTCTTCTA +
Preference number: 3 (lower is better)
Translates to: NLNLARKYHPISPPPPPKYSLQF*PRKTLL
Trigger: TAGAAGAGTTTTTCTGGGCAAGAATTGGAGGGAGTA...TTTTGGGGGTGGTGGGGGTGAGATAGGGTGGTACTTTCTTGCTAGATTTAGATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
3UTR TCA 72 bp ACTCTGTGGAGACAGTTTGAAGTACACACAGCTAGCTaGGAGCACATGAACATACTACTGCACATTTCCATG +
Preference number: 3 (lower is better)
Translates to: TLWRQFEVHTAS*EHMNILLHISM
Trigger: CATGGAAATGTGCAGTAGTATGTTCATGTGCTCTCAGCTAGCTGTGTGTACTTCAAACTGTCTCCACAGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 72 bp ATTTACATCAGCTCGTCTTCACAACATGAAGTTGAATaGTCCTTATCATCCCTGTCCTCCTCACTCCCCTGT +
Preference number: 3 (lower is better)
Translates to: IYISSSSQHEVE*SLSSLSSSLPC
Trigger: ACAGGGGAGTGAGGAGGACAGGGATGATAAGGATCATTCAACTTCATGTTGTGAAGACGAGCTGATGTAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR GCA 72 bp GGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTaGATTAAAAGAGAGCATGTGTTGTCTGAGAACCAC +
Preference number: 3 (lower is better)
Translates to: GRLNLWYHLLQS*IKREHVLSENH
Trigger: GTGGTTCTCAGACAACACATGCTCTCTTTTAATGCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp CGTAGGTATGTGTTCCATGTTGTCACCGGGGGTATCTTGATCACATCATCAAGACATGTGTATATGTACTaGCATGTGGAAGCAAGAGTA +
Preference number: 3 (lower is better)
Translates to: RRYVFHVVTGGILITSSRHVYMY*HVEARV
Trigger: TACTCTTGCTTCCACATGCAAGTACATATACACATG...TCTTGATGATGTGATCAAGATACCCCCGGTGACAACATGGAACACATACCTACG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp CGTAGGTATGTGTTCCATGTTGTCACCGGGGGTATCTTGATCACATCATCAAGATCAGAAAAATCTGCCTaGCAATACACAAGTGGTCAT +
Preference number: 3 (lower is better)
Translates to: RRYVFHVVTGGILITSSRSEKSA*QYTSGH
Trigger: ATGACCACTTGTGTATTGCAAGGCAGATTTTTCTGA...TCTTGATGATGTGATCAAGATACCCCCGGTGACAACATGGAACACATACCTACG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp GCTCTCTTCTATGACCAAAAATCGCTGGCAATCCAACATCGCTTCTATCCTGTGATTGGGATCCAGGTTTaGTCTGAATGTTCCAGAAAA +
Preference number: 3 (lower is better)
Translates to: ALFYDQKSLAIQHRFYPVIGIQV*SECSRK
Trigger: TTTTCTGGAACATTCAGACAAAACCTGGATCCCAAT...CACAGGATAGAAGCGATGTTGGATTGCCAGCGATTTTTGGTCATAGAAGAGAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp AACTCTCTTCCAAAACAGTCTCTTAAAGAGCAAGTCGCAGGCTTCACCCTTCTTTCTTTCCATTTTCCATaGGGATCCAGGTTTTGTCTG +
Preference number: 3 (lower is better)
Translates to: NSLPKQSLKEQVAGFTLLSFHFP*GSRFCL
Trigger: CAGACAAAACCTGGATCCCAATGGAAAATGGAAAGA...AAGAAGGGTGAAGCCTGCGACTTGCTCTTTAAGAGACTGTTTTGGAAGAGAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 72 bp GCTCACAGATCGCATCAAGCTATCTGTATCAATGCTTaGGTTCACAGCCCACTGCAAAGTACTCATGATATT +
Preference number: 3 (lower is better)
Translates to: AHRSHQAICINA*VHSPLQSTHDI
Trigger: AATATCATGAGTACTTTGCAGTGGGCTGTGAACTCAAGCATTGATACAGATAGCTTGATGCGATCTGTGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 72 bp TGTGAACGTGAAATACCTACAATGGGCTCATGTGTTTaGAAACATTATTTCCAGTTGGGGGTACACTGGGGT +
Preference number: 3 (lower is better)
Translates to: CEREIPTMGSCV*KHYFQLGVHWG
Trigger: ACCCCAGTGTACCCCCAACTGGAAATAATGTTTTCAAACACATGAGCCCATTGTAGGTATTTCACGTTCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
3UTR CCA 72 bp TTGGGGGTACACTGGGGTAGGACAGTGTTTACAACTTaGAGCTTTACTGGAGAAAGTAAGCTACTAGAATTA +
Preference number: 3 (lower is better)
Translates to: LGVHWGRTVFTT*SFTGESKLLEL
Trigger: TAATTCTAGTAGCTTACTTTCTCCAGTAAAGCTCCAAGTTGTAAACACTGTCCTACCCCAGTGTACCCCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
3UTR-3UTR CAA 90 bp TCTATTCTCATTTGGAACCAGCGCAAGGTTGCCAGATACATAAACCAGTTGGCACTTCACAACATGAAGTaGAATGATCCTTATCATCCC +
Preference number: 3 (lower is better)
Translates to: SILIWNQRKVARYINQLALHNMK*NDPYHP
Trigger: GGGATGATAAGGATCATTCAACTTCATGTTGTGAAG...TGCCAACTGGTTTATGTATCTGGCAACCTTGCGCTGGTTCCAAATGAGAATAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp TGGCAGTGTGCAAATTCAGAGCTTTGTGGAACAGAGTTTCAAAGTAAGTCTGGCCTTCACAACATGAAGTaGAATGATCCTTATCATCCC +
Preference number: 3 (lower is better)
Translates to: WQCANSELCGTEFQSKSGLHNMK*NDPYHP
Trigger: GGGATGATAAGGATCATTCAACTTCATGTTGTGAAG...GCCAGACTTACTTTGAAACTCTGTTCCACAAAGCTCTGAATTTGCACACTGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGAGTCTTAAAGATCTGTaGCTTTCTGGGAACATAAGT +
Preference number: 3 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSSLKDL*LSGNIS
Trigger: ACTTATGTTCCCAGAAAGCAACAGATCTTTAAGACT...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGCTTGCGATAATCTCCTaGAATATACATCCACTTCAT +
Preference number: 3 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSLAIIS*NIHPLH
Trigger: ATGAAGTGGATGTATATTCAAGGAGATTATCGCAAG...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp TCTATTCTCATTTGGAACCAGCGCAAGGTTGCCAGATACATAAACCAGTTGGCAGAAATTTTAGTACCATaGTTTCCACTGTTAACAGGG +
Preference number: 3 (lower is better)
Translates to: SILIWNQRKVARYINQLAEILVP*FPLLTG
Trigger: CCCTGTTAACAGTGGAAACAATGGTACTAAAATTTC...TGCCAACTGGTTTATGTATCTGGCAACCTTGCGCTGGTTCCAAATGAGAATAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGGAAATTTTAGTACCATaGTTTCCACTGTTAACAGGG +
Preference number: 3 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSEILVP*FPLLTG
Trigger: CCCTGTTAACAGTGGAAACAATGGTACTAAAATTTC...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 72 bp GTAGGTATGTGTTCCATGTTGTCACCGGGGGTATCTTaGTCACATCATCAAGAAAACACTCCTTTAAATCTT +
Preference number: 3 (lower is better)
Translates to: VGMCSMLSPGVS*SHHQENTPLNL
Trigger: AAGATTTAAAGGAGTGTTTTCTTGATGATGTGATCAAGATACCCCCGGTGACAACATGGAACACATACCTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 72 bp ATGAAGAAGAGGACAAATATCATGTCTATTCTCATTTaGAACCAGCGCAAGGTTGCCAGATACATAAACCAG +
Preference number: 3 (lower is better)
Translates to: MKKRTNIMSILI*NQRKVARYINQ
Trigger: CTGGTTTATGTATCTGGCAACCTTGCGCTGGTTCCAAATGAGAATAGACATGATATTTGTCCTCTTCTTCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp ACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTGGGAGTCTTAAAGATCTGTaGCTTTCTGGGAACATAAGT +
Preference number: 3 (lower is better)
Translates to: TNTTFLHFRSLKDLLLSGSLKDL*LSGNIS
Trigger: ACTTATGTTCCCAGAAAGCAACAGATCTTTAAGACT...CCCAGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 72 bp TGGAAAGTCAGTTACCCATACCCATATGAACGTTTTTaGACTCTCTTCCAAAACAGTCTCTTAAAGAGCAAG +
Preference number: 3 (lower is better)
Translates to: WKVSYPYPYERF*TLFQNSLLKSK
Trigger: CTTGCTCTTTAAGAGACTGTTTTGGAAGAGAGTTCAAAAACGTTCATATGGGTATGGGTAACTGACTTTCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR-3UTR CAA 90 bp ATATCAAGGAAATTATCCAGGCCACTTTATGGGACTGAAACAGTTCTTTTCCTAAGGTCTCAGTTAGAATaGAACTTCTTCTTTCCTCAG +
Preference number: 3 (lower is better)
Translates to: ISRKLSRPLYGTETVLFLRSQLE*NFFFPQ
Trigger: CTGAGGAAAGAAGAAGTTCAATTCTAACTGAGACCT...TAGGAAAAGAACTGTTTCAGTCCCATAAAGTGGCCTGGATAATTTCCTTGATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 72 bp AGTGGTCATTATCAACTATCTGAAGTTCAAACAATTTaGCTACTGCTGGAAAGTCAGTTACCCATACCCATA +
Preference number: 3 (lower is better)
Translates to: SGHYQLSEVQTI*LLLESQLPIPI
Trigger: TATGGGTATGGGTAACTGACTTTCCAGCAGTAGTCAAATTGTTTGAACTTCAGATAGTTGATAATGACCACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR TCA 72 bp TTCAGTTCTTCAATAATGCAAATTAACCAGCTGTACTaGACAATAAGCCGAATGACTAACCTGGTTGGCATT +
Preference number: 3 (lower is better)
Translates to: FSSSIMQINQLY*TISRMTNLVGI
Trigger: AATGCCAACCAGGTTAGTCATTCGGCTTATTGTTCAGTACAGCTGGTTAATTTGCATTATTGAAGAACTGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR GCA 72 bp TCATCAGACTCTCCATCGATACATAATGGAGTCTTTTaGACAATGGAAATTTTCCTTACAGAGCTGAATGAA +
Preference number: 3 (lower is better)
Translates to: SSDSPSIHNGVF*TMEIFLTELNE
Trigger: TTCATTCAGCTCTGTAAGGAAAATTTCCATTGTGCAAAAGACTCCATTATGTATCGATGGAGAGTCTGATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CCA 72 bp ATCAACTATCTGAAGTTCAAACAATTTGACTACTGCTaGAAAGTCAGTTACCCATACCCATATGAACGTTTT +
Preference number: 3 (lower is better)
Translates to: INYLKFKQFDYC*KVSYPYPYERF
Trigger: AAAACGTTCATATGGGTATGGGTAACTGACTTTCCAGCAGTAGTCAAATTGTTTGAACTTCAGATAGTTGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp TCTCTTTGTGGGCTAGGATCACTTGCCACAGAGCCCCAGGGATCCACCTGTCTCTTGTGCTTGCTGGAGTaGCGGCCCTGGAAGAACCTC +
Preference number: 4 (lower is better)
Translates to: SLCGLGSLATEPQGSTCLLCLLE*RPWKNL
Trigger: GAGGTTCTTCCAGGGCCGCCACTCCAGCAAGCACAA...GAGACAGGTGGATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR GCA 90 bp AGCCTGGAACTCTCTTTGTGGGCTAGGATCACTTGCCACAGAGCCCCAGGGATCACGGCAGTGGGGAACTaGCGTGTGACTGACATACGT +
Preference number: 4 (lower is better)
Translates to: SLELSLWARITCHRAPGITAVGN*RVTDIR
Trigger: ACGTATGTCAGTCACACGGCAGTTCCCCACTGCCGT...GATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGAGTTCCAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 72 bp GTCTCCTCTTTCAGAGCAGTAATTTGCGTCCGAGGCTaGTGCTTGCTGGAGTGGCGGCCCTGGAAGAACCTC +
Preference number: 4 (lower is better)
Translates to: VSSFRAVICVRG*CLLEWRPWKNL
Trigger: GAGGTTCTTCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCAAATTACTGCTCTGAAAGAGGAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp AGCCTGGAACTCTCTTTGTGGGCTAGGATCACTTGCCACAGAGCCCCAGGGATCGTTATGGGGTCTAGATaGGCACTGGGCTCATCAAGC +
Preference number: 4 (lower is better)
Translates to: SLELSLWARITCHRAPGIVMGSR*ALGSSS
Trigger: GCTTGATGAGCCCAGTGCCCATCTAGACCCCATAAC...GATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGAGTTCCAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
3UTR CAA 72 bp CCCACCTCTCCAGTCTGTCTAAACGACTGTTTGGGTTaGCTCCACGGGGCAGAGGAATCGTCTACTGAGAAC +
Preference number: 4 (lower is better)
Translates to: PTSPVCLNDCLG*LHGAEESSTEN
Trigger: GTTCTCAGTAGACGATTCCTCTGCCCCGTGGAGCAAACCCAAACAGTCGTTTAGACAGACTGGAGAGGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 72 bp CTGCATGGGTTCTGGGAATGGACTCAGTGCACTGAGTaGCTTCCTCAGCATCCCAGCACTAGAGACGGGTTT +
Preference number: 4 (lower is better)
Translates to: LHGFWEWTQCTE*LPQHPSTRDGF
Trigger: AAACCCGTCTCTAGTGCTGGGATGCTGAGGAAGCAACTCAGTGCACTGAGTCCATTCCCAGAACCCATGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 72 bp TCTTTCAGAGCAGTAATTTGCGTCCGAGGCTTGTGCTaGCTGGAGTGGCGGCCCTGGAAGAACCTCATCTTT +
Preference number: 4 (lower is better)
Translates to: SFRAVICVRGLC*LEWRPWKNLIF
Trigger: AAAGATGAGGTTCTTCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCAAATTACTGCTCTGAAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp AATTTGCGTCCGAGGCTTGTGCTTGCTGGAGTGGCGGCCCTGGAAGAACCTCATGACTACAAAGAACCCTaGAAAGAAGAAGGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: NLRPRLVLAGVAALEEPHDYKEP*KEEGRA
Trigger: AGCTCTGCCTTCTTCTTTTCAGGGTTCTTTGTAGTC...ATGAGGTTCTTCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCAAATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp CAGCGGCAAACCTCTGAAGAGGCTCAGGGCAAGCAAAGTGTCAGCCACTCCCACCTTAATAATTCCCTCTaGAGCTTCCAGTTCTCCCAA +
Preference number: 4 (lower is better)
Translates to: QRQTSEEAQGKQSVSHSHLNNSL*SFQFSQ
Trigger: TTGGGAGAACTGGAAGCTTCAGAGGGAATTATTAAG...GTGGGAGTGGCTGACACTTTGCTTGCCCTGAGCCTCTTCAGAGGTTTGCCGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR GCA 90 bp AAGCAAGAGTATATCCACAGGTATTGTCCCTCAGGTGCCCAGCCTGGAACTCTCACGACTGTTTGGGTTTaGTCCACGGGGCAGAGGAAT +
Preference number: 4 (lower is better)
Translates to: KQEYIHRYCPSGAQPGTLTTVWV*STGQRN
Trigger: ATTCCTCTGCCCCGTGGAGCAAACCCAAACAGTCGT...GAGAGTTCCAGGCTGGGCACCTGAGGGACAATACCTGTGGATATACTCTTGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR GCA 90 bp TGTGCCCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCATGGTCCTCTGAAGATTaGTGGAGCCTGAGTTGGGTG +
Preference number: 4 (lower is better)
Translates to: CAHQGAVLTFGTIFFKAAWSSED*WSLSWV
Trigger: CACCCAACTCAGGCTCCAGCAATCTTCAGAGGACCA...TGCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGGGCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR GCA 90 bp TTGAACTCTCTTCCAAAACAGTCTCTTAAAGAGCAAGTCGCAGGCTTCACCCTTTCCGAGGCTTGTGCTTaGTGGAGTGGCGGCCCTGGA +
Preference number: 4 (lower is better)
Translates to: LNSLPKQSLKEQVAGFTLSEACA*WSGGPG
Trigger: TCCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGA...AAGGGTGAAGCCTGCGACTTGCTCTTTAAGAGACTGTTTTGGAAGAGAGTTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CCA 90 bp TCTCTTTGTGGGCTAGGATCACTTGCCACAGAGCCCCAGGGATCCACCTGTCTCAAGGCCAAAAATAGCTaGGTGAAGAAGCAGTGTCCT +
Preference number: 4 (lower is better)
Translates to: SLCGLGSLATEPQGSTCLKAKNS*VKKQCP
Trigger: AGGACACTGCTTCTTCACCCAGCTATTTTTGGCCTT...GAGACAGGTGGATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp AGCCTGGAACTCTCTTTGTGGGCTAGGATCACTTGCCACAGAGCCCCAGGGATCCATTTTCTCCATCGCTaGTTCCCAACAATATGCCTT +
Preference number: 4 (lower is better)
Translates to: SLELSLWARITCHRAPGIHFLHR*FPTICL
Trigger: AAGGCATATTGTTGGGAATCAGCGATGGAGAAAATG...GATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGAGTTCCAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp AGCCTGGAACTCTCTTTGTGGGCTAGGATCACTTGCCACAGAGCCCCAGGGATCCTTAATAATTCCCTCTaGAGCTTCCAGTTCTCCCAA +
Preference number: 4 (lower is better)
Translates to: SLELSLWARITCHRAPGILNNSL*SFQFSQ
Trigger: TTGGGAGAACTGGAAGCTTCAGAGGGAATTATTAAG...GATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGAGTTCCAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR GCA 90 bp GACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGGGCATCACGGCAGTGGGGAACTaGCGTGTGACTGACATACGT +
Preference number: 4 (lower is better)
Translates to: DLDILNPDGLLDHQMSGITAVGN*RVTDIR
Trigger: ACGTATGTCAGTCACACGGCAGTTCCCCACTGCCGT...GATGCCCGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR GCA 90 bp AAAAGAGAGCATGTGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCTGCGTCCGAGGCTTGTaGTTGCTGGAGTGGCGGCCC +
Preference number: 4 (lower is better)
Translates to: KREHVLSENHTDGYKIYICVRGL*LLEWRP
Trigger: GGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCA...GATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACACATGCTCTCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
3UTR CAA 72 bp TTTTCTCCCACCTCTCCAGTCTGTCTAAACGACTGTTaGGGTTTGCTCCACGGGGCAGAGGAATCGTCTACT +
Preference number: 4 (lower is better)
Translates to: FSPTSPVCLNDC*GLLHGAEESST
Trigger: AGTAGACGATTCCTCTGCCCCGTGGAGCAAACCCAAACAGTCGTTTAGACAGACTGGAGAGGTGGGAGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 72 bp TCTAGATGGGCACTGGGCTCATCAAGCAGTATGATCTaGGCCTTACTGAGAACTGATCGGGCCAAGCACATT +
Preference number: 4 (lower is better)
Translates to: SRWALGSSSSMI*ALLRTDRAKHI
Trigger: AATGTGCTTGGCCCGATCAGTTCTCAGTAAGGCCAAGATCATACTGCTTGATGAGCCCAGTGCCCATCTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp TGTGCCCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCAATCTTTGCAGCTCTCTaGTCTCTGTACTTCACCATC +
Preference number: 4 (lower is better)
Translates to: CAHQGAVLTFGTIFFKAAIFAAL*SLYFTI
Trigger: GATGGTGAAGTACAGAGATCAGAGAGCTGCAAAGAT...TGCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGGGCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp CGTAGGTATGTGTTCCATGTTGTCACCGGGGGTATCTTGATCACATCATCAAGAGACCTCCACTCAGTGTaGCTCCACCTTCTCCAAGAA +
Preference number: 4 (lower is better)
Translates to: RRYVFHVVTGGILITSSRDLHSV*LHLLQE
Trigger: TTCTTGGAGAAGGTGGAGTCACACTGAGTGGAGGTC...TCTTGATGATGTGATCAAGATACCCCCGGTGACAACATGGAACACATACCTACG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp ATGTGCCCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCCAGATTCCAGTTGTTTaGGCTGCTGTGCTGTATGAA +
Preference number: 4 (lower is better)
Translates to: MCPSGGRLNLWYHLLQSCQIPVV*AAVLYE
Trigger: TTCATACAGCACAGCAGCTCAAACAACTGGAATCTG...GCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGGGCACAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR TCA 90 bp TGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACTCACTCAGAAGTGCCTaGAGGGAGTCGTACTGCCAG +
Preference number: 4 (lower is better)
Translates to: CCLRTTQMGTRFTSARLHSLRSA*RESYCQ
Trigger: CTGGCAGTACGACTCCCTTCAGGCACTTCTGAGTGA...GTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR GCA 90 bp AGCCTGGAACTCTCTTTGTGGGCTAGGATCACTTGCCACAGAGCCCCAGGGATCGTTTTCTGTCACCATTaGTTTGTTGTACTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: SLELSLWARITCHRAPGIVFCHH*FVVLSP
Trigger: TGGAGAAAGTACAACAAAGCAATGGTGACAGAAAAC...GATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGAGTTCCAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp ATGTGCCCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCATGTCTATTCTCATTTaGAACCAGCGCAAGGTTGCC +
Preference number: 4 (lower is better)
Translates to: MCPSGGRLNLWYHLLQSCMSILI*NQRKVA
Trigger: GGCAACCTTGCGCTGGTTCCAAATGAGAATAGACAT...GCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGGGCACAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
3UTR CAA 72 bp GTGGGTGAAAATTGGACTCCTGCCTTCAGATTCCAGTaGTTTGAGCTGCTGTGCTGTATGAAGGAAGTAGGC +
Preference number: 4 (lower is better)
Translates to: VGENWTPAFRFQ*FELLCCMKEVG
Trigger: GCCTACTTCCTTCATACAGCACAGCAGCTCAAACAACTGGAATCTGAAGGCAGGAGTCCAATTTTCACCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp AGCAAAGTACTTTTTCCTGATCCAGTTCTTCCTAAGAGCCCCACCCTCTGTCCACCCACAAGGCAGAGATaGCTGAAACTGACATTGTTC +
Preference number: 4 (lower is better)
Translates to: SKVLFPDPVLPKSPTLCPPTRQR*LKLTLF
Trigger: GAACAATGTCAGTTTCAGTCATCTCTGCCTTGTGGG...TGGACAGAGGGTGGGGCTCTTAGGAAGAACTGGATCAGGAAAAAGTACTTTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp CCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCATTAAAGTTCTGCAAACTTGGTaGTGTCCTGCTGTAGTTGGC +
Preference number: 4 (lower is better)
Translates to: PSGGRLNLWYHLLQSCIKVLQTW*CPAVVG
Trigger: GCCAACTACAGCAGGACATCACCAAGTTTGCAGAAC...TTTAATGCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGGACCTCCACTCAGTGTaGCTCCACCTTCTCCAAGAA +
Preference number: 4 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSDLHSV*LHLLQE
Trigger: TTCTTGGAGAAGGTGGAGTCACACTGAGTGGAGGTC...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR GCA 90 bp AGTAAGTCTGGCGTCGGAAGGCTCGAAGTGTCCAGAGTCCTTTTAAGCTTGTCAGAAGGCATAAGCCTATaGCAAGGTAAATGGCAATGG +
Preference number: 4 (lower is better)
Translates to: SKSGVGRLEVSRVLLSLSEGISL*QGKWQW
Trigger: CCATTGCCATTTACCTTGGCATAGGCTTATGCCTTC...TGACAAGCTTAAAAGGACTCTGGACACTTCGAGCCTTCCGACGCCAGACTTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp AAAAGAGAGCATGTGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCCTGTCTTCTTCTGCCTaGAAATGTGGGGCCGGTGGC +
Preference number: 4 (lower is better)
Translates to: KREHVLSENHTDGYKIYILSSSA*KCGAGG
Trigger: GCCACCGGCCCCACATTTCCAGGCAGAAGAAGACAG...GATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACACATGCTCTCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CCA 90 bp GACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGGGCATCGAGCTAATGGCCTGCTaGAAGATACTCTTCTCACTC +
Preference number: 4 (lower is better)
Translates to: DLDILNPDGLLDHQMSGIELMAC*KILFSL
Trigger: GAGTGAGAAGAGTATCTTCCAGCAGGCCATTAGCTC...GATGCCCGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR TCA 90 bp ATTATTTCCAGTTGGGGGTACACTGGGGTAGGACAGTGTTTACAACTTGGAGCTCCAAAAATAGCTGGGTaGAGAAGCAGTGTCCTGACA +
Preference number: 4 (lower is better)
Translates to: IISSWGYTGVGQCLQLGAPKIAG*RSSVLT
Trigger: TGTCAGGACACTGCTTCTTCACCCAGCTATTTTTGG...AGCTCCAAGTTGTAAACACTGTCCTACCCCAGTGTACCCCCAACTGGAAATAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR TCA 90 bp TTTTTCATTCTGCATGGGTTCTGGGAATGGACTCAGTGCACTGAGTTGCTTCCTTGCATTCCAATGCGATaGAGGCCAAAAATAGCTGGG +
Preference number: 4 (lower is better)
Translates to: FFILHGFWEWTQCTELLPCIPMR*RPKIAG
Trigger: CCCAGCTATTTTTGGCCTTCATCGCATTGGAATGCA...AGGAAGCAACTCAGTGCACTGAGTCCATTCCCAGAACCCATGCAGAATGAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp TTGAACTCTCTTCCAAAACAGTCTCTTAAAGAGCAAGTCGCAGGCTTCACCCTTAAGATTGCTGGAGCCTaGGTTGGGTGTGAACGTCAT +
Preference number: 4 (lower is better)
Translates to: LNSLPKQSLKEQVAGFTLKIAGA*VGCERH
Trigger: ATGACGTTCACACCCAACTCAGGCTCCAGCAATCTT...AAGGGTGAAGCCTGCGACTTGCTCTTTAAGAGACTGTTTTGGAAGAGAGTTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CCA 90 bp TGTGCCCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCACAAGGTAAATGGCAATaGAACGTTCCACCTTGTTTT +
Preference number: 4 (lower is better)
Translates to: CAHQGAVLTFGTIFFKAAQGKWQ*NVPPCF
Trigger: AAAACAAGGTGGAACGTTCCATTGCCATTTACCTTG...TGCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGGGCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 72 bp TGGAACCAGCGCAAGGTTGCCAGATACATAAACCAGTaGGCAGTGTGCAAATTCAGAGCTTTGTGGAACAGA +
Preference number: 4 (lower is better)
Translates to: WNQRKVARYINQ*AVCKFRALWNR
Trigger: TCTGTTCCACAAAGCTCTGAATTTGCACACTGCCAACTGGTTTATGTATCTGGCAACCTTGCGCTGGTTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp TGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACCCCACAAGGCAGAGATaGCTGAAACTGACATTGTTC +
Preference number: 4 (lower is better)
Translates to: CCLRTTQMGTRFTSARLHPTRQR*LKLTLF
Trigger: GAACAATGTCAGTTTCAGTCATCTCTGCCTTGTGGG...GTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp TTCCTCAGTAAACTGGTCAAAAGTATCATACCCCATGAGTTTCGAACTGAAGTCGAAATCCTTGCACGCTaGCCTCCACTCAGTGTGACT +
Preference number: 4 (lower is better)
Translates to: FLSKLVKSIIPHEFRTEVEILAR*PPLSVT
Trigger: AGTCACACTGAGTGGAGGTCAGCGTGCAAGGATTTC...GACTTCAGTTCGAAACTCATGGGGTATGATACTTTTGACCAGTTTACTGAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGTTGTCACAAGGTGGGTaGAAATTGGACTCCTGCCTT +
Preference number: 4 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSLSQGG*KLDSCL
Trigger: AAGGCAGGAGTCCAATTTTCACCCACCTTGTGACAA...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR TCA 90 bp AAAAGAGAGCATGTGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCTGTGTTCACAGAGGATaGCTGTGCAACCAGCGAAGG +
Preference number: 4 (lower is better)
Translates to: KREHVLSENHTDGYKIYICVHRG*LCNQRR
Trigger: CCTTCGCTGGTTGCACAGTCATCCTCTGTGAACACA...GATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACACATGCTCTCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR GCA 90 bp AAGCAAGAGTATATCCACAGGTATTGTCCCTCAGGTGCCCAGCCTGGAACTCTCTCTTTCATTGATCTTTaGAGCTCTCTGATCTCTGTA +
Preference number: 4 (lower is better)
Translates to: KQEYIHRYCPSGAQPGTLSFIDL*SSLISV
Trigger: TACAGAGATCAGAGAGCTGCAAAGATCAATGAAAGA...GAGAGTTCCAGGCTGGGCACCTGAGGGACAATACCTGTGGATATACTCTTGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR GCA 90 bp ATTCTTGCCCAGAAAAACTCTTCTAAAAACAGATCTGGTAACAAGCCCAGAACAACGGCAGTGGGGAACTaGCGTGTGACTGACATACGT +
Preference number: 4 (lower is better)
Translates to: ILAQKNSSKNRSGNKPRTTAVGN*RVTDIR
Trigger: ACGTATGTCAGTCACACGGCAGTTCCCCACTGCCGT...TGTTCTGGGCTTGTTACCAGATCTGTTTTTAGAAGAGTTTTTCTGGGCAAGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR GCA 90 bp ACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACAACATGAAGTTGAATACGGCAGTGGGGAACTaGCGTGTGACTGACATACGT +
Preference number: 4 (lower is better)
Translates to: TQMGTRFTSARLHNMKLNTAVGN*RVTDIR
Trigger: ACGTATGTCAGTCACACGGCAGTTCCCCACTGCCGT...ATTCAACTTCATGTTGTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR GCA 90 bp ATGTGCCCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCGAAACTCTTCCACTGTaGTTAATAATTCCCTCTGAA +
Preference number: 4 (lower is better)
Translates to: MCPSGGRLNLWYHLLQSCETLPL*LIIPSE
Trigger: TTCAGAGGGAATTATTAAGCACAGTGGAAGAGTTTC...GCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGGGCACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGTCAGCAGAAGGGGCTTaGTATATGTCTGACAACTCC +
Preference number: 4 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSSAEGA*YMSDNS
Trigger: GGAGTTGTCAGACATATACCAAGCCCCTTCTGCTGA...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp TTTTTCATTCTGCATGGGTTCTGGGAATGGACTCAGTGCACTGAGTTGCTTCCTAAGGCCAAAAATAGCTaGGTGAAGAAGCAGTGTCCT +
Preference number: 4 (lower is better)
Translates to: FFILHGFWEWTQCTELLPKAKNS*VKKQCP
Trigger: AGGACACTGCTTCTTCACCCAGCTATTTTTGGCCTT...AGGAAGCAACTCAGTGCACTGAGTCCATTCCCAGAACCCATGCAGAATGAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp AAGCAAGAGTATATCCACAGGTATTGTCCCTCAGGTGCCCAGCCTGGAACTCTCCATTGTTCTCATCACTaGAATGTTTTCTGTCACCAT +
Preference number: 4 (lower is better)
Translates to: KQEYIHRYCPSGAQPGTLHCSHH*NVFCHH
Trigger: ATGGTGACAGAAAACATTCCAGTGATGAGAACAATG...GAGAGTTCCAGGCTGGGCACCTGAGGGACAATACCTGTGGATATACTCTTGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp GACCAAAAATCGCTGGCAATCCAACATCGCTTCTATCCTGTGTTCACAGAGGATATGTCCTGCTGTAGTTaGCAAGCTTTGACAACACTC +
Preference number: 4 (lower is better)
Translates to: DQKSLAIQHRFYPVFTEDMSCCS*QALTTL
Trigger: GAGTGTTGTCAAAGCTTGCCAACTACAGCAGGACAT...ATCCTCTGTGAACACAGGATAGAAGCGATGTTGGATTGCCAGCGATTTTTGGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp TGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTTTCTGCCTGGAAATGTaGGGCCGGTGGCGATCATGT +
Preference number: 4 (lower is better)
Translates to: CTNTTFLHFRSLKDLLLSFCLEM*GRWRSC
Trigger: ACATGATCGCCACCGGCCCCACATTTCCAGGCAGAA...AGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CCA 90 bp CCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCATTAAAAAGCTTGTCACAAGGTaGGTGAAAATTGGACTCCTG +
Preference number: 4 (lower is better)
Translates to: PSGGRLNLWYHLLQSCIKKLVTR*VKIGLL
Trigger: CAGGAGTCCAATTTTCACCCACCTTGTGACAAGCTT...TTTAATGCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CCA 90 bp ATAAGTGTGTCGATTTCCATATCAAGGAAATTATCCAGGCCACTTTATGGGACTCTGGAGTGGCGGCCCTaGAAGAACCTCATCTTTTCC +
Preference number: 4 (lower is better)
Translates to: ISVSISISRKLSRPLYGTLEWRP*KNLIFS
Trigger: GGAAAAGATGAGGTTCTTCCAGGGCCGCCACTCCAG...AGTCCCATAAAGTGGCCTGGATAATTTCCTTGATATGGAAATCGACACACTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CCA 90 bp CTACAATGGGCTCATGTGTTTGAAAACATTATTTCCAGTTGGGGGTACACTGGGCATCCCTGCTGTAGTTaGCAAGCTTTGACAACACTC +
Preference number: 4 (lower is better)
Translates to: LQWAHVFENIISSWGYTGHPCCS*QALTTL
Trigger: GAGTGTTGTCAAAGCTTGCCAACTACAGCAGGGATG...CCCAGTGTACCCCCAACTGGAAATAATGTTTTCAAACACATGAGCCCATTGTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR TCA 90 bp TGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACATCTTTGCAGCTCTCTaGTCTCTGTACTTCACCATC +
Preference number: 4 (lower is better)
Translates to: CCLRTTQMGTRFTSARLHIFAAL*SLYFTI
Trigger: GATGGTGAAGTACAGAGATCAGAGAGCTGCAAAGAT...GTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp CTACAATGGGCTCATGTGTTTGAAAACATTATTTCCAGTTGGGGGTACACTGGGATCTTTGCAGCTCTCTaGTCTCTGTACTTCACCATC +
Preference number: 4 (lower is better)
Translates to: LQWAHVFENIISSWGYTGIFAAL*SLYFTI
Trigger: GATGGTGAAGTACAGAGATCAGAGAGCTGCAAAGAT...CCCAGTGTACCCCCAACTGGAAATAATGTTTTCAAACACATGAGCCCATTGTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR TCA 90 bp AATCTAAATCTAGCAAGAAAGTACCACCCTATCTCACCCCCACCACCCCCAAAACATTTTCTCCATCGCTaGTTCCCAACAATATGCCTT +
Preference number: 4 (lower is better)
Translates to: NLNLARKYHPISPPPPPKHFLHR*FPTICL
Trigger: AAGGCATATTGTTGGGAATCAGCGATGGAGAAAATG...TTTTGGGGGTGGTGGGGGTGAGATAGGGTGGTACTTTCTTGCTAGATTTAGATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR TCA 90 bp GCTCTCTTCTATGACCAAAAATCGCTGGCAATCCAACATCGCTTCTATCCTGTGCATTTTCTCCATCGCTaGTTCCCAACAATATGCCTT +
Preference number: 4 (lower is better)
Translates to: ALFYDQKSLAIQHRFYPVHFLHR*FPTICL
Trigger: AAGGCATATTGTTGGGAATCAGCGATGGAGAAAATG...CACAGGATAGAAGCGATGTTGGATTGCCAGCGATTTTTGGTCATAGAAGAGAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp GCACTAGTTTGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGGTTCTGCAAACTTGGTaGTGTCCTGCTGTAGTTGGC +
Preference number: 4 (lower is better)
Translates to: ALVCTNTTFLHFRSLKDLVLQTW*CPAVVG
Trigger: GCCAACTACAGCAGGACATCACCAAGTTTGCAGAAC...CAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCAAACTAGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp AATTTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGGTTCTGCAAACTTGGTaGTGTCCTGCTGTAGTTGGC +
Preference number: 4 (lower is better)
Translates to: NFQDLDILNPDGLLDHQMVLQTW*CPAVVG
Trigger: GCCAACTACAGCAGGACATCACCAAGTTTGCAGAAC...CATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp ATAAGTGTGTCGATTTCCATATCAAGGAAATTATCCAGGCCACTTTATGGGACTGAAATCCTTGCACGCTaGCCTCCACTCAGTGTGACT +
Preference number: 4 (lower is better)
Translates to: ISVSISISRKLSRPLYGTEILAR*PPLSVT
Trigger: AGTCACACTGAGTGGAGGTCAGCGTGCAAGGATTTC...AGTCCCATAAAGTGGCCTGGATAATTTCCTTGATATGGAAATCGACACACTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR GCA 90 bp ATGACCAAAAATCGCTGGCAATCCAACATCGCTTCTATCCTGTGTTCACAGAGGTGTGTTGTCTTGTTCTaGAAACTTGGTGATGTCCTG +
Preference number: 4 (lower is better)
Translates to: MTKNRWQSNIASILCSQRCVVLF*KLGDVL
Trigger: CAGGACATCACCAAGTTTGCAGAACAAGACAACACA...CCTCTGTGAACACAGGATAGAAGCGATGTTGGATTGCCAGCGATTTTTGGTCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp TTGAACTCTCTTCCAAAACAGTCTCTTAAAGAGCAAGTCGCAGGCTTCACCCTTAAGGCCAAAAATAGCTaGGTGAAGAAGCAGTGTCCT +
Preference number: 4 (lower is better)
Translates to: LNSLPKQSLKEQVAGFTLKAKNS*VKKQCP
Trigger: AGGACACTGCTTCTTCACCCAGCTATTTTTGGCCTT...AAGGGTGAAGCCTGCGACTTGCTCTTTAAGAGACTGTTTTGGAAGAGAGTTCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp CTACAATGGGCTCATGTGTTTGAAAACATTATTTCCAGTTGGGGGTACACTGGGAAGGCCAAAAATAGCTaGGTGAAGAAGCAGTGTCCT +
Preference number: 4 (lower is better)
Translates to: LQWAHVFENIISSWGYTGKAKNS*VKKQCP
Trigger: AGGACACTGCTTCTTCACCCAGCTATTTTTGGCCTT...CCCAGTGTACCCCCAACTGGAAATAATGTTTTCAAACACATGAGCCCATTGTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR CCA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGATGTCCTGCTGTAGTTaGCAAGCTTTGACAACACTC +
Preference number: 4 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSMSCCS*QALTTL
Trigger: GAGTGTTGTCAAAGCTTGCCAACTACAGCAGGACAT...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 72 bp GCATTTCCATCATCCATGTATTTCACAGTAAGGTCTTaGACAACCATTTCGCCTCCAGAGGGCCAGATATCA +
Preference number: 4 (lower is better)
Translates to: AFPSSMYFTVRS*TTISPPEGQIS
Trigger: TGATATCTGGCCCTCTGGAGGCGAAATGGTTGTCAAAGACCTTACTGTGAAATACATGGATGATGGAAATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp TGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACTCACGAGTCTTTCATTaGTCTTTGCAGCTCTCTGAT +
Preference number: 4 (lower is better)
Translates to: CCLRTTQMGTRFTSARLHSRVFH*SLQLSD
Trigger: ATCAGAGAGCTGCAAAGATCAATGAAAGACTCGTGA...GTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp CTACAATGGGCTCATGTGTTTGAAAACATTATTTCCAGTTGGGGGTACACTGGGTCACGAGTCTTTCATTaGTCTTTGCAGCTCTCTGAT +
Preference number: 4 (lower is better)
Translates to: LQWAHVFENIISSWGYTGSRVFH*SLQLSD
Trigger: ATCAGAGAGCTGCAAAGATCAATGAAAGACTCGTGA...CCCAGTGTACCCCCAACTGGAAATAATGTTTTCAAACACATGAGCCCATTGTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR TCA 90 bp TGGCAGTGTGCAAATTCAGAGCTTTGTGGAACAGAGTTTCAAAGTAAGTCTGGCTCACGAGTCTTTCATTaGTCTTTGCAGCTCTCTGAT +
Preference number: 4 (lower is better)
Translates to: WQCANSELCGTEFQSKSGSRVFH*SLQLSD
Trigger: ATCAGAGAGCTGCAAAGATCAATGAAAGACTCGTGA...GCCAGACTTACTTTGAAACTCTGTTCCACAAAGCTCTGAATTTGCACACTGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp TGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACCATTTTCTCCATCGCTaGTTCCCAACAATATGCCTT +
Preference number: 4 (lower is better)
Translates to: CCLRTTQMGTRFTSARLHHFLHR*FPTICL
Trigger: AAGGCATATTGTTGGGAATCAGCGATGGAGAAAATG...GTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp TTCCTCAGTAAACTGGTCAAAAGTATCATACCCCATGAGTTTCGAACTGAAGTCCCCACAAGGCAGAGATaGCTGAAACTGACATTGTTC +
Preference number: 4 (lower is better)
Translates to: FLSKLVKSIIPHEFRTEVPTRQR*LKLTLF
Trigger: GAACAATGTCAGTTTCAGTCATCTCTGCCTTGTGGG...GACTTCAGTTCGAAACTCATGGGGTATGATACTTTTGACCAGTTTACTGAGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGCTTAATAATTCCCTCTaGAGCTTCCAGTTCTCCCAA +
Preference number: 4 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSLNNSL*SFQFSQ
Trigger: TTGGGAGAACTGGAAGCTTCAGAGGGAATTATTAAG...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp TTTTTCATTCTGCATGGGTTCTGGGAATGGACTCAGTGCACTGAGTTGCTTCCTAAATTGAGAGCAGAATaGAACTCTTCCACTGTGCTT +
Preference number: 4 (lower is better)
Translates to: FFILHGFWEWTQCTELLPKLRAE*NSSTVL
Trigger: AAGCACAGTGGAAGAGTTTCATTCTGCTCTCAATTT...AGGAAGCAACTCAGTGCACTGAGTCCATTCCCAGAACCCATGCAGAATGAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp GACCAAAAATCGCTGGCAATCCAACATCGCTTCTATCCTGTGTTCACAGAGGATAAATTGAGAGCAGAATaGAACTCTTCCACTGTGCTT +
Preference number: 4 (lower is better)
Translates to: DQKSLAIQHRFYPVFTEDKLRAE*NSSTVL
Trigger: AAGCACAGTGGAAGAGTTTCATTCTGCTCTCAATTT...ATCCTCTGTGAACACAGGATAGAAGCGATGTTGGATTGCCAGCGATTTTTGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp ATATCAAGGAAATTATCCAGGCCACTTTATGGGACTGAAACAGTTCTTTTCCTAGAAATCCTTGCACGCTaGCCTCCACTCAGTGTGACT +
Preference number: 4 (lower is better)
Translates to: ISRKLSRPLYGTETVLFLEILAR*PPLSVT
Trigger: AGTCACACTGAGTGGAGGTCAGCGTGCAAGGATTTC...TAGGAAAAGAACTGTTTCAGTCCCATAAAGTGGCCTGGATAATTTCCTTGATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp GCACTAGTTTGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGAGCCTGAGTTGGGTGTaGACGTCATCAGATCCAAAA +
Preference number: 4 (lower is better)
Translates to: ALVCTNTTFLHFRSLKDLSLSWV*TSSDPK
Trigger: TTTTGGATCTGATGACGTTCACACCCAACTCAGGCT...CAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCAAACTAGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR TCA 90 bp AACTCTCTTCCAAAACAGTCTCTTAAAGAGCAAGTCGCAGGCTTCACCCTTCTTCATTGCTCTCTTCTATaGCCAAAAATCGCTGGCAAT +
Preference number: 4 (lower is better)
Translates to: NSLPKQSLKEQVAGFTLLHCSLL*PKIAGN
Trigger: ATTGCCAGCGATTTTTGGTCATAGAAGAGAGCAATG...AAGAAGGGTGAAGCCTGCGACTTGCTCTTTAAGAGACTGTTTTGGAAGAGAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR GCA 90 bp GTCACAAGGTGGGTGAAAATTGGACTCCTGCCTTCAGATTCCAGTTGTTTGAGCTCTTTCATTGATCTTTaGAGCTCTCTGATCTCTGTA +
Preference number: 4 (lower is better)
Translates to: VTRWVKIGLLPSDSSCLSSFIDL*SSLISV
Trigger: TACAGAGATCAGAGAGCTGCAAAGATCAATGAAAGA...GCTCAAACAACTGGAATCTGAAGGCAGGAGTCCAATTTTCACCCACCTTGTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR GCA 90 bp TGGCAGTGTGCAAATTCAGAGCTTTGTGGAACAGAGTTTCAAAGTAAGTCTGGCTGTGTTGTCTTGTTCTaGAAACTTGGTGATGTCCTG +
Preference number: 4 (lower is better)
Translates to: WQCANSELCGTEFQSKSGCVVLF*KLGDVL
Trigger: CAGGACATCACCAAGTTTGCAGAACAAGACAACACA...GCCAGACTTACTTTGAAACTCTGTTCCACAAAGCTCTGAATTTGCACACTGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp ACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTGGGTCAGCAGAAGGGGCTTaGTATATGTCTGACAACTCC +
Preference number: 4 (lower is better)
Translates to: TNTTFLHFRSLKDLLLSGSAEGA*YMSDNS
Trigger: GGAGTTGTCAGACATATACCAAGCCCCTTCTGCTGA...CCCAGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp ATGACCAAAAATCGCTGGCAATCCAACATCGCTTCTATCCTGTGTTCACAGAGGCAAGGTAAATGGCAATaGAACGTTCCACCTTGTTTT +
Preference number: 4 (lower is better)
Translates to: MTKNRWQSNIASILCSQRQGKWQ*NVPPCF
Trigger: AAAACAAGGTGGAACGTTCCATTGCCATTTACCTTG...CCTCTGTGAACACAGGATAGAAGCGATGTTGGATTGCCAGCGATTTTTGGTCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp ATAAGTGTGTCGATTTCCATATCAAGGAAATTATCCAGGCCACTTTATGGGACTCCAAAAATAGCTGGGTaGAGAAGCAGTGTCCTGACA +
Preference number: 4 (lower is better)
Translates to: ISVSISISRKLSRPLYGTPKIAG*RSSVLT
Trigger: TGTCAGGACACTGCTTCTTCACCCAGCTATTTTTGG...AGTCCCATAAAGTGGCCTGGATAATTTCCTTGATATGGAAATCGACACACTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp AATTTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGGACTACAAAGAACCCTaGAAAGAAGAAGGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: NFQDLDILNPDGLLDHQMDYKEP*KEEGRA
Trigger: AGCTCTGCCTTCTTCTTTTCAGGGTTCTTTGTAGTC...CATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp GCACTAGTTTGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGGACTACAAAGAACCCTaGAAAGAAGAAGGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: ALVCTNTTFLHFRSLKDLDYKEP*KEEGRA
Trigger: AGCTCTGCCTTCTTCTTTTCAGGGTTCTTTGTAGTC...CAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCAAACTAGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp AAGCCAAGTAAGACTTATTACTCCCTCCAATTCTTGCCCAGAAAAACTCTTCTACCCACAAGGCAGAGATaGCTGAAACTGACATTGTTC +
Preference number: 4 (lower is better)
Translates to: KPSKTYYSLQFLPRKTLLPTRQR*LKLTLF
Trigger: GAACAATGTCAGTTTCAGTCATCTCTGCCTTGTGGG...TAGAAGAGTTTTTCTGGGCAAGAATTGGAGGGAGTAATAAGTCTTACTTGGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR TCA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGAAATTGAGAGCAGAATaGAACTCTTCCACTGTGCTT +
Preference number: 4 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSKLRAE*NSSTVL
Trigger: AAGCACAGTGGAAGAGTTTCATTCTGCTCTCAATTT...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp GCAATACATATCTTAGAGGAAAGTAAGTTGGGCTTTGAGTTATATAAGACACTGGACCTCCACTCAGTGTaGCTCCACCTTCTCCAAGAA +
Preference number: 4 (lower is better)
Translates to: AIHILEESKLGFELYKTLDLHSV*LHLLQE
Trigger: TTCTTGGAGAAGGTGGAGTCACACTGAGTGGAGGTC...CAGTGTCTTATATAACTCAAAGCCCAACTTACTTTCCTCTAAGATATGTATTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp GCAATACATATCTTAGAGGAAAGTAAGTTGGGCTTTGAGTTATATAAGACACTGGAAGTTCTGGTCCTCTaGAGATTGCTGGAGCCTGAG +
Preference number: 4 (lower is better)
Translates to: AIHILEESKLGFELYKTLEVLVL*RLLEPE
Trigger: CTCAGGCTCCAGCAATCTTCAGAGGACCAGAACTTC...CAGTGTCTTATATAACTCAAAGCCCAACTTACTTTCCTCTAAGATATGTATTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR GCA 90 bp AATCTAAATCTAGCAAGAAAGTACCACCCTATCTCACCCCCACCACCCCCAAAATCTTTCATTGATCTTTaGAGCTCTCTGATCTCTGTA +
Preference number: 4 (lower is better)
Translates to: NLNLARKYHPISPPPPPKSFIDL*SSLISV
Trigger: TACAGAGATCAGAGAGCTGCAAAGATCAATGAAAGA...TTTTGGGGGTGGTGGGGGTGAGATAGGGTGGTACTTTCTTGCTAGATTTAGATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR GCA 90 bp TTTTTCATTCTGCATGGGTTCTGGGAATGGACTCAGTGCACTGAGTTGCTTCCTGAAACTCTTCCACTGTaGTTAATAATTCCCTCTGAA +
Preference number: 4 (lower is better)
Translates to: FFILHGFWEWTQCTELLPETLPL*LIIPSE
Trigger: TTCAGAGGGAATTATTAAGCACAGTGGAAGAGTTTC...AGGAAGCAACTCAGTGCACTGAGTCCATTCCCAGAACCCATGCAGAATGAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp AAGCCAAGTAAGACTTATTACTCCCTCCAATTCTTGCCCAGAAAAACTCTTCTATCAGCAGAAGGGGCTTaGTATATGTCTGACAACTCC +
Preference number: 4 (lower is better)
Translates to: KPSKTYYSLQFLPRKTLLSAEGA*YMSDNS
Trigger: GGAGTTGTCAGACATATACCAAGCCCCTTCTGCTGA...TAGAAGAGTTTTTCTGGGCAAGAATTGGAGGGAGTAATAAGTCTTACTTGGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR CCA 90 bp ACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACAACATGAAGTTGAATTCAGCAGAAGGGGCTTaGTATATGTCTGACAACTCC +
Preference number: 4 (lower is better)
Translates to: TQMGTRFTSARLHNMKLNSAEGA*YMSDNS
Trigger: GGAGTTGTCAGACATATACCAAGCCCCTTCTGCTGA...ATTCAACTTCATGTTGTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp TGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACAGTTTTTCAGACAAGTaGTCAGCTGAATCAGCAGAA +
Preference number: 4 (lower is better)
Translates to: CCLRTTQMGTRFTSARLHSFSDK*SAESAE
Trigger: TTCTGCTGATTCAGCTGACCACTTGTCTGAAAAACT...GTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp TTGAACTCTCTTCCAAAACAGTCTCTTAAAGAGCAAGTCGCAGGCTTCACCCTTCTTTCCTCAGTAAACTaGTCAAAAGTATCATACCCC +
Preference number: 4 (lower is better)
Translates to: LNSLPKQSLKEQVAGFTLLSSVN*SKVSYP
Trigger: GGGGTATGATACTTTTGACCAGTTTACTGAGGAAAG...AAGGGTGAAGCCTGCGACTTGCTCTTTAAGAGACTGTTTTGGAAGAGAGTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
3UTR CAA 72 bp CGTAGGTATGTGTTCCATGTTGTCACCGGGGGTATCTaGATCACATCATCAAGAAAACACTCCTTTAAATCT +
Preference number: 4 (lower is better)
Translates to: RRYVFHVVTGGI*ITSSRKHSFKS
Trigger: AGATTTAAAGGAGTGTTTTCTTGATGATGTGATCAAGATACCCCCGGTGACAACATGGAACACATACCTACG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 72 bp TTCTTCCTAAGAGCCCCACCCTCTGTCCAGGACTTATaGAAAAAGAAATGTTCTCTAATACGGCATTTCCAT +
Preference number: 4 (lower is better)
Translates to: FFLRAPPSVQDL*KKKCSLIRHFH
Trigger: ATGGAAATGCCGTATTAGAGAACATTTCTTTTTCAATAAGTCCTGGACAGAGGGTGGGGCTCTTAGGAAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp CTACAATGGGCTCATGTGTTTGAAAACATTATTTCCAGTTGGGGGTACACTGGGTTCCCTAGGATAGCTTaGAAAATAACCAGGATTATC +
Preference number: 4 (lower is better)
Translates to: LQWAHVFENIISSWGYTGFPRIA*KITRII
Trigger: GATAATCCTGGTTATTTTTCAAGCTATCCTAGGGAA...CCCAGTGTACCCCCAACTGGAAATAATGTTTTCAAACACATGAGCCCATTGTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR TCA 90 bp AAGCCAAGTAAGACTTATTACTCCCTCCAATTCTTGCCCAGAAAAACTCTTCTAGACTACAAAGAACCCTaGAAAGAAGAAGGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: KPSKTYYSLQFLPRKTLLDYKEP*KEEGRA
Trigger: AGCTCTGCCTTCTTCTTTTCAGGGTTCTTTGTAGTC...TAGAAGAGTTTTTCTGGGCAAGAATTGGAGGGAGTAATAAGTCTTACTTGGCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR GCA 90 bp ATTCTTGCCCAGAAAAACTCTTCTAAAAACAGATCTGGTAACAAGCCCAGAACAGAAGGCATAAGCCTATaGCAAGGTAAATGGCAATGG +
Preference number: 4 (lower is better)
Translates to: ILAQKNSSKNRSGNKPRTEGISL*QGKWQW
Trigger: CCATTGCCATTTACCTTGGCATAGGCTTATGCCTTC...TGTTCTGGGCTTGTTACCAGATCTGTTTTTAGAAGAGTTTTTCTGGGCAAGAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR GCA 90 bp AACTCTCTTCCAAAACAGTCTCTTAAAGAGCAAGTCGCAGGCTTCACCCTTCTTTCTTTCATTGATCTTTaGAGCTCTCTGATCTCTGTA +
Preference number: 4 (lower is better)
Translates to: NSLPKQSLKEQVAGFTLLSFIDL*SSLISV
Trigger: TACAGAGATCAGAGAGCTGCAAAGATCAATGAAAGA...AAGAAGGGTGAAGCCTGCGACTTGCTCTTTAAGAGACTGTTTTGGAAGAGAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR GCA 90 bp ACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTGGGTGTGTTGTCTTGTTCTaGAAACTTGGTGATGTCCTG +
Preference number: 4 (lower is better)
Translates to: TNTTFLHFRSLKDLLLSGCVVLF*KLGDVL
Trigger: CAGGACATCACCAAGTTTGCAGAACAAGACAACACA...CCCAGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR GCA 90 bp GCACTAGTTTGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGGAGTTCACAGCCCACTaGAAAGTACTCATGATATTC +
Preference number: 4 (lower is better)
Translates to: ALVCTNTTFLHFRSLKDLEFTAH*KVLMIF
Trigger: GAATATCATGAGTACTTTGCAGTGGGCTGTGAACTC...CAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCAAACTAGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CCA 90 bp AACTCTCTTCCAAAACAGTCTCTTAAAGAGCAAGTCGCAGGCTTCACCCTTCTTCATTGTTCTCATCACTaGAATGTTTTCTGTCACCAT +
Preference number: 4 (lower is better)
Translates to: NSLPKQSLKEQVAGFTLLHCSHH*NVFCHH
Trigger: ATGGTGACAGAAAACATTCCAGTGATGAGAACAATG...AAGAAGGGTGAAGCCTGCGACTTGCTCTTTAAGAGACTGTTTTGGAAGAGAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp TGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACCATTGTTCTCATCACTaGAATGTTTTCTGTCACCAT +
Preference number: 4 (lower is better)
Translates to: CCLRTTQMGTRFTSARLHHCSHH*NVFCHH
Trigger: ATGGTGACAGAAAACATTCCAGTGATGAGAACAATG...GTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp CTACAATGGGCTCATGTGTTTGAAAACATTATTTCCAGTTGGGGGTACACTGGGCATTGTTCTCATCACTaGAATGTTTTCTGTCACCAT +
Preference number: 4 (lower is better)
Translates to: LQWAHVFENIISSWGYTGHCSHH*NVFCHH
Trigger: ATGGTGACAGAAAACATTCCAGTGATGAGAACAATG...CCCAGTGTACCCCCAACTGGAAATAATGTTTTCAAACACATGAGCCCATTGTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR CCA 90 bp ACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTGGGACTCGTCGAATGACTTaGTATGTTATGGGGTCTAGA +
Preference number: 4 (lower is better)
Translates to: TNTTFLHFRSLKDLLLSGTRRMT*YVMGSR
Trigger: TCTAGACCCCATAACATACCAAGTCATTCGACGAGT...CCCAGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR TCA 90 bp GCAATACATATCTTAGAGGAAAGTAAGTTGGGCTTTGAGTTATATAAGACACTGCCAAAAATAGCTGGGTaGAGAAGCAGTGTCCTGACA +
Preference number: 4 (lower is better)
Translates to: AIHILEESKLGFELYKTLPKIAG*RSSVLT
Trigger: TGTCAGGACACTGCTTCTTCACCCAGCTATTTTTGG...CAGTGTCTTATATAACTCAAAGCCCAACTTACTTTCCTCTAAGATATGTATTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp GAATTCCATGAGACACCATCAATCTCTATATCACCTTTAATGTTCAACATTCGTCCAAAAATAGCTGGGTaGAGAAGCAGTGTCCTGACA +
Preference number: 4 (lower is better)
Translates to: EFHETPSISISPLMFNIRPKIAG*RSSVLT
Trigger: TGTCAGGACACTGCTTCTTCACCCAGCTATTTTTGG...ACGAATGTTGAACATTAAAGGTGATATAGAGATTGATGGTGTCTCATGGAATTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp AAATATCGTAGGTATGTGTTCCATGTTGTCACCGGGGGTATCTTGATCACATCACTGTTACATTTTCCATaGTTATGCCTGTGGTCATTA +
Preference number: 4 (lower is better)
Translates to: KYRRYVFHVVTGGILITSLLHFP*LCLWSL
Trigger: TAATGACCACAGGCATAATCATGGAAAATGTAACAG...TGATGTGATCAAGATACCCCCGGTGACAACATGGAACACATACCTACGATATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp AAGCCAAGTAAGACTTATTACTCCCTCCAATTCTTGCCCAGAAAAACTCTTCTACTTAATAATTCCCTCTaGAGCTTCCAGTTCTCCCAA +
Preference number: 4 (lower is better)
Translates to: KPSKTYYSLQFLPRKTLLLNNSL*SFQFSQ
Trigger: TTGGGAGAACTGGAAGCTTCAGAGGGAATTATTAAG...TAGAAGAGTTTTTCTGGGCAAGAATTGGAGGGAGTAATAAGTCTTACTTGGCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR GCA 90 bp ATATCAAGGAAATTATCCAGGCCACTTTATGGGACTGAAACAGTTCTTTTCCTAGAAGGCATAAGCCTATaGCAAGGTAAATGGCAATGG +
Preference number: 4 (lower is better)
Translates to: ISRKLSRPLYGTETVLFLEGISL*QGKWQW
Trigger: CCATTGCCATTTACCTTGGCATAGGCTTATGCCTTC...TAGGAAAAGAACTGTTTCAGTCCCATAAAGTGGCCTGGATAATTTCCTTGATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp AGTCTGGACGTAGACTTTGTAGCTCAGAAAATGTCCCATAAAAATAGCTACTGCCAAGGTAAATGGCAATaGAACGTTCCACCTTGTTTT +
Preference number: 4 (lower is better)
Translates to: SLDVDFVAQKMSHKNSYCQGKWQ*NVPPCF
Trigger: AAAACAAGGTGGAACGTTCCATTGCCATTTACCTTG...GCAGTAGCTATTTTTATGGGACATTTTCTGAGCTACAAAGTCTACGTCCAGACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp AAAAGAGAGCATGTGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCTTCCCTAGGATAGCTTaGAAAATAACCAGGATTATC +
Preference number: 4 (lower is better)
Translates to: KREHVLSENHTDGYKIYIFPRIA*KITRII
Trigger: GATAATCCTGGTTATTTTTCAAGCTATCCTAGGGAA...GATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACACATGCTCTCTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp ATATCAAGGAAATTATCCAGGCCACTTTATGGGACTGAAACAGTTCTTTTCCTATCACGAGTCTTTCATTaGTCTTTGCAGCTCTCTGAT +
Preference number: 4 (lower is better)
Translates to: ISRKLSRPLYGTETVLFLSRVFH*SLQLSD
Trigger: ATCAGAGAGCTGCAAAGATCAATGAAAGACTCGTGA...TAGGAAAAGAACTGTTTCAGTCCCATAAAGTGGCCTGGATAATTTCCTTGATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp GCACTAGTTTGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGCTGTTACATTTTCCATaGTTATGCCTGTGGTCATTA +
Preference number: 4 (lower is better)
Translates to: ALVCTNTTFLHFRSLKDLLLHFP*LCLWSL
Trigger: TAATGACCACAGGCATAATCATGGAAAATGTAACAG...CAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCAAACTAGTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp ATTCTTGCCCAGAAAAACTCTTCTAAAAACAGATCTGGTAACAAGCCCAGAACAAAATTGAGAGCAGAATaGAACTCTTCCACTGTGCTT +
Preference number: 4 (lower is better)
Translates to: ILAQKNSSKNRSGNKPRTKLRAE*NSSTVL
Trigger: AAGCACAGTGGAAGAGTTTCATTCTGCTCTCAATTT...TGTTCTGGGCTTGTTACCAGATCTGTTTTTAGAAGAGTTTTTCTGGGCAAGAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR GCA 90 bp ACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTGGGAATCCATATAAAATGTaGCAAGGCAAGTCCTTCATC +
Preference number: 4 (lower is better)
Translates to: TNTTFLHFRSLKDLLLSGNPYKM*QGKSFI
Trigger: GATGAAGGACTTGCCTTGGCACATTTTATATGGATT...CCCAGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CCA 90 bp ATTCTTGCCCAGAAAAACTCTTCTAAAAACAGATCTGGTAACAAGCCCAGAACACAAGGTAAATGGCAATaGAACGTTCCACCTTGTTTT +
Preference number: 4 (lower is better)
Translates to: ILAQKNSSKNRSGNKPRTQGKWQ*NVPPCF
Trigger: AAAACAAGGTGGAACGTTCCATTGCCATTTACCTTG...TGTTCTGGGCTTGTTACCAGATCTGTTTTTAGAAGAGTTTTTCTGGGCAAGAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR CCA 90 bp GAATTCCATGAGACACCATCAATCTCTATATCACCTTTAATGTTCAACATTCGTATGTCCTGCTGTAGTTaGCAAGCTTTGACAACACTC +
Preference number: 4 (lower is better)
Translates to: EFHETPSISISPLMFNIRMSCCS*QALTTL
Trigger: GAGTGTTGTCAAAGCTTGCCAACTACAGCAGGACAT...ACGAATGTTGAACATTAAAGGTGATATAGAGATTGATGGTGTCTCATGGAATTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 72 bp ACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTaGCTTTCTGGGAACATAAGTGTGTCGATTTCCATA +
Preference number: 4 (lower is better)
Translates to: TTFLHFRSLKDL*LSGNISVSISI
Trigger: TATGGAAATCGACACACTTATGTTCCCAGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 72 bp AATGAAGAAGAGGACAAATATCATGTCTATTCTCATTaGGAACCAGCGCAAGGTTGCCAGATACATAAACCA +
Preference number: 4 (lower is better)
Translates to: NEEEDKYHVYSH*EPAQGCQIHKP
Trigger: TGGTTTATGTATCTGGCAACCTTGCGCTGGTTCCAAATGAGAATAGACATGATATTTGTCCTCTTCTTCATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp TCTTCTTTCCTCAGTAAACTGGTCAAAAGTATCATACCCCATGAGTTTCGAACTTTCCCTAGGATAGCTTaGAAAATAACCAGGATTATC +
Preference number: 4 (lower is better)
Translates to: SSFLSKLVKSIIPHEFRTFPRIA*KITRII
Trigger: GATAATCCTGGTTATTTTTCAAGCTATCCTAGGGAA...AGTTCGAAACTCATGGGGTATGATACTTTTGACCAGTTTACTGAGGAAAGAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR TCA 90 bp AAGCCAAGTAAGACTTATTACTCCCTCCAATTCTTGCCCAGAAAAACTCTTCTACTGTTACATTTTCCATaGTTATGCCTGTGGTCATTA +
Preference number: 4 (lower is better)
Translates to: KPSKTYYSLQFLPRKTLLLLHFP*LCLWSL
Trigger: TAATGACCACAGGCATAATCATGGAAAATGTAACAG...TAGAAGAGTTTTTCTGGGCAAGAATTGGAGGGAGTAATAAGTCTTACTTGGCTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR TCA 90 bp TGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTCTGTTACATTTTCCATaGTTATGCCTGTGGTCATTA +
Preference number: 4 (lower is better)
Translates to: CTNTTFLHFRSLKDLLLSLLHFP*LCLWSL
Trigger: TAATGACCACAGGCATAATCATGGAAAATGTAACAG...AGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR GCA 90 bp ACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACAACATGAAGTTGAATAATCCATATAAAATGTaGCAAGGCAAGTCCTTCATC +
Preference number: 4 (lower is better)
Translates to: TQMGTRFTSARLHNMKLNNPYKM*QGKSFI
Trigger: GATGAAGGACTTGCCTTGGCACATTTTATATGGATT...ATTCAACTTCATGTTGTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR GCA 90 bp AATACCTACAATGGGCTCATGTGTTTGAAAACATTATTTCCAGTTGGGGGTACAGTTTTCTGTCACCATTaGTTTGTTGTACTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: NTYNGLMCLKTLFPVGGTVFCHH*FVVLSP
Trigger: TGGAGAAAGTACAACAAAGCAATGGTGACAGAAAAC...TGTACCCCCAACTGGAAATAATGTTTTCAAACACATGAGCCCATTGTAGGTATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR GCA 90 bp AATACCTACAATGGGCTCATGTGTTTGAAAACATTATTTCCAGTTGGGGGTACAGAAACTCTTCCACTGTaGTTAATAATTCCCTCTGAA +
Preference number: 4 (lower is better)
Translates to: NTYNGLMCLKTLFPVGGTETLPL*LIIPSE
Trigger: TTCAGAGGGAATTATTAAGCACAGTGGAAGAGTTTC...TGTACCCCCAACTGGAAATAATGTTTTCAAACACATGAGCCCATTGTAGGTATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR CCA 90 bp ACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACAACATGAAGTTGAATAGCAGTAAGCCTTTATaGAGAGTAAAATATCGTAGG +
Preference number: 4 (lower is better)
Translates to: TQMGTRFTSARLHNMKLNSSKPL*RVKYRR
Trigger: CCTACGATATTTTACTCTCCATAAAGGCTTACTGCT...ATTCAACTTCATGTTGTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR TCA 90 bp GCAATACATATCTTAGAGGAAAGTAAGTTGGGCTTTGAGTTATATAAGACACTGAAATTTTTGATGCTGTaGTTAACGTATGCACCAGCG +
Preference number: 4 (lower is better)
Translates to: AIHILEESKLGFELYKTLKFLML*LTYAPA
Trigger: CGCTGGTGCATACGTTAATCACAGCATCAAAAATTT...CAGTGTCTTATATAACTCAAAGCCCAACTTACTTTCCTCTAAGATATGTATTGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR TCA 90 bp GAATTCCATGAGACACCATCAATCTCTATATCACCTTTAATGTTCAACATTCGTTTCCCTAGGATAGCTTaGAAAATAACCAGGATTATC +
Preference number: 4 (lower is better)
Translates to: EFHETPSISISPLMFNIRFPRIA*KITRII
Trigger: GATAATCCTGGTTATTTTTCAAGCTATCCTAGGGAA...ACGAATGTTGAACATTAAAGGTGATATAGAGATTGATGGTGTCTCATGGAATTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR GCA 90 bp GAATTCCATGAGACACCATCAATCTCTATATCACCTTTAATGTTCAACATTCGTGTTTTCTGTCACCATTaGTTTGTTGTACTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: EFHETPSISISPLMFNIRVFCHH*FVVLSP
Trigger: TGGAGAAAGTACAACAAAGCAATGGTGACAGAAAAC...ACGAATGTTGAACATTAAAGGTGATATAGAGATTGATGGTGTCTCATGGAATTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR GCA 90 bp GTACCATTGTTTCCACTGTTAACAGGGTTGTTTTTAAGCAACCATAACACAAATGTTTTCTGTCACCATTaGTTTGTTGTACTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: VPLFPLLTGLFLSNHNTNVFCHH*FVVLSP
Trigger: TGGAGAAAGTACAACAAAGCAATGGTGACAGAAAAC...ATTTGTGTTATGGTTGCTTAAAAACAACCCTGTTAACAGTGGAAACAATGGTAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
3UTR CAA 72 bp AATAAGCCAAGTAAGACTTATTACTCCCTCCAATTCTaGCCCAGAAAAACTCTTCTAAAAACAGATCTGGTA +
Preference number: 4 (lower is better)
Translates to: NKPSKTYYSLQF*PRKTLLKTDLV
Trigger: TACCAGATCTGTTTTTAGAAGAGTTTTTCTGGGCAAGAATTGGAGGGAGTAATAAGTCTTACTTGGCTTATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
3UTR CAA 72 bp TTCTTCATCTTTCCATTTTCCATTGGGATCCAGGTTTaGTCTGAATGTTCCAGAAAAGATAAATACTTTCTG +
Preference number: 4 (lower is better)
Translates to: FFIFPFSIGIQV*SECSRKDKYFL
Trigger: CAGAAAGTATTTATCTTTTCTGGAACATTCAGACAAAACCTGGATCCCAATGGAAAATGGAAAGATGAAGAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp AAGCAAGAGTATATCCACAGGTATTGTCCCTCAGGTGCCCAGCCTGGAACTCTCGTCCGAGGCTTGTGCTaGCTGGAGTGGCGGCCCTGG +
Preference number: 5 (lower is better)
Translates to: KQEYIHRYCPSGAQPGTLVRGLC*LEWRPW
Trigger: CCAGGGCCGCCACTCCAGCAAGCACAAGCCTCGGAC...GAGAGTTCCAGGCTGGGCACCTGAGGGACAATACCTGTGGATATACTCTTGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CAA 90 bp TCTGAAGAGGCTCAGGGCAAGCAAAGTGTCAGCCACTCCCACGTAAATGTAAAAACAGGCTGGACAGCCTaGGTGACTTCCCCTAGGTAT +
Preference number: 5 (lower is better)
Translates to: SEEAQGKQSVSHSHVNVKTGWTA*VTSPRY
Trigger: ATACCTAGGGGAAGTCACCAAGGCTGTCCAGCCTGT...TTTTACATTTACGTGGGAGTGGCTGACACTTTGCTTGCCCTGAGCCTCTTCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp TCTCTTTGTGGGCTAGGATCACTTGCCACAGAGCCCCAGGGATCCACCTGTCTCTCTCCAAGAACTGTGTaGTCTTGTTCTGCAAACTTG +
Preference number: 5 (lower is better)
Translates to: SLCGLGSLATEPQGSTCLSPRTV*SCSANL
Trigger: CAAGTTTGCAGAACAAGACAACACAGTTCTTGGAGA...GAGACAGGTGGATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp CCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCATTAAAAACGACTGTTTGGGTTaGCTCCACGGGGCAGAGGAA +
Preference number: 5 (lower is better)
Translates to: PSGGRLNLWYHLLQSCIKNDCLG*LHGAEE
Trigger: TTCCTCTGCCCCGTGGAGCAAACCCAAACAGTCGTT...TTTAATGCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CAA 90 bp TCTCTTTGTGGGCTAGGATCACTTGCCACAGAGCCCCAGGGATCCACCTGTCTCATTGGGATCCAGGTTTaGTCTGAATGTTCCAGAAAA +
Preference number: 5 (lower is better)
Translates to: SLCGLGSLATEPQGSTCLIGIQV*SECSRK
Trigger: TTTTCTGGAACATTCAGACAAAACCTGGATCCCAAT...GAGACAGGTGGATCCCTGGGGCTCTGTGGCAAGTGATCCTAGCCCACAAAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CAA 90 bp TCTGAAGAGGCTCAGGGCAAGCAAAGTGTCAGCCACTCCCACGTAAATGTAAAATTGCTAAAGAAATCCTaGCACGCTGACCTCCACTCA +
Preference number: 5 (lower is better)
Translates to: SEEAQGKQSVSHSHVNVKLLKKS*HADLHS
Trigger: TGAGTGGAGGTCAGCGTGCAAGGATTTCTTTAGCAA...TTTTACATTTACGTGGGAGTGGCTGACACTTTGCTTGCCCTGAGCCTCTTCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS CCA 90 bp TCTAGTTTTTCAGACAAGTGGTCAGCTGAATCAGCAGAAGGGGCTTaGTATATGTCTGACAACTCCAAGTGGTGTCTGTACCCTTTCCTC +
Preference number: 5 (lower is better)
Translates to: SSFSDKWSAESAEGA*YMSDNSKWCLYPFL
Trigger: GAGGAAAGGGTACAGACACCACTTGGAGTTGTCAGACATATACCAAGCCCCTTCTGCTGATTCAGCTGACCACTTGTCTGAAAAACTAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000129452.8
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp TGTGCCCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCATATCAAGAACGCGGCTaGACAACTTTAAAGTCTTCT +
Preference number: 5 (lower is better)
Translates to: CAHQGAVLTFGTIFFKAAYQERG*TTLKSS
Trigger: AGAAGACTTTAAAGTTGTCAAGCCGCGTTCTTGATA...TGCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGGGCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp ATGTGCCCATCAGGGGGCCGTCTTAACCTTTGGTACCATCTTCTTCAAAGCTGCCAGTACTTTATACTCTaGTTTCTGCAGGAAATCCTG +
Preference number: 5 (lower is better)
Translates to: MCPSGGRLNLWYHLLQSCQYFIL*FLQEIL
Trigger: CAGGATTTCCTGCAGAAACAAGAGTATAAAGTACTG...GCAGCTTTGAAGAAGATGGTACCAAAGGTTAAGACGGCCCCCTGATGGGCACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp GGCAGTGTGCAAATTCAGAGCTTTGTGGAACAGAGTTTCAAAGTAAGTCTGGCGTTGCTAAAGAAATCCTaGCACGCTGACCTCCACTCA +
Preference number: 5 (lower is better)
Translates to: GSVQIQSFVEQSFKVSLALLKKS*HADLHS
Trigger: TGAGTGGAGGTCAGCGTGCAAGGATTTCTTTAGCAA...CGCCAGACTTACTTTGAAACTCTGTTCCACAAAGCTCTGAATTTGCACACTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp AGTAAGTCTGGCGTCGGAAGGCTCGAAGTGTCCAGAGTCCTTTTAAGCTTGTCAACCTTGTCCTTTGTCTaGCTAAAGAAATCCTTGCAC +
Preference number: 5 (lower is better)
Translates to: SKSGVGRLEVSRVLLSLSTLSFV*LKKSLH
Trigger: GTGCAAGGATTTCTTTAGCAAGACAAAGGACAAGGT...TGACAAGCTTAAAAGGACTCTGGACACTTCGAGCCTTCCGACGCCAGACTTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115405.9
CDS-3UTR CAA 90 bp ATGACCAAAAATCGCTGGCAATCCAACATCGCTTCTATCCTGTGTTCACAGAGGCAGCTGAAGAAGAGTTaGGAGATAAAGCTGGCTTTC +
Preference number: 5 (lower is better)
Translates to: MTKNRWQSNIASILCSQRQLKKS*EIKLAF
Trigger: GAAAGCCAGCTTTATCTCCAAACTCTTCTTCAGCTG...CCTCTGTGAACACAGGATAGAAGCGATGTTGGATTGCCAGCGATTTTTGGTCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp TGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACGCTGGGGATTCTTTTTaGAAGCTTGTTCTCTGTCCC +
Preference number: 5 (lower is better)
Translates to: CCLRTTQMGTRFTSARLHAGDSF*KLVLCP
Trigger: GGGACAGAGAACAAGCTTCAAAAAAGAATCCCCAGC...GTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp ACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACAACATGAAGTTGAATACAGGCTGGACAGCCTaGGTGACTTCCCCTAGGTAT +
Preference number: 5 (lower is better)
Translates to: TQMGTRFTSARLHNMKLNTGWTA*VTSPRY
Trigger: ATACCTAGGGGAAGTCACCAAGGCTGTCCAGCCTGT...ATTCAACTTCATGTTGTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp ATAAGTGTGTCGATTTCCATATCAAGGAAATTATCCAGGCCACTTTATGGGACTACAGGCTGGACAGCCTaGGTGACTTCCCCTAGGTAT +
Preference number: 5 (lower is better)
Translates to: ISVSISISRKLSRPLYGTTGWTA*VTSPRY
Trigger: ATACCTAGGGGAAGTCACCAAGGCTGTCCAGCCTGT...AGTCCCATAAAGTGGCCTGGATAATTTCCTTGATATGGAAATCGACACACTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp AAGCCAAGTAAGACTTATTACTCCCTCCAATTCTTGCCCAGAAAAACTCTTCTAACAGGCTGGACAGCCTaGGTGACTTCCCCTAGGTAT +
Preference number: 5 (lower is better)
Translates to: KPSKTYYSLQFLPRKTLLTGWTA*VTSPRY
Trigger: ATACCTAGGGGAAGTCACCAAGGCTGTCCAGCCTGT...TAGAAGAGTTTTTCTGGGCAAGAATTGGAGGGAGTAATAAGTCTTACTTGGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR CAA 90 bp AGTAAGTCTGGCGTCGGAAGGCTCGAAGTGTCCAGAGTCCTTTTAAGCTTGTCATATCAAGAACGCGGCTaGACAACTTTAAAGTCTTCT +
Preference number: 5 (lower is better)
Translates to: SKSGVGRLEVSRVLLSLSYQERG*TTLKSS
Trigger: AGAAGACTTTAAAGTTGTCAAGCCGCGTTCTTGATA...TGACAAGCTTAAAAGGACTCTGGACACTTCGAGCCTTCCGACGCCAGACTTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp AAGCAAGAGTATATCCACAGGTATTGTCCCTCAGGTGCCCAGCCTGGAACTCTCCTTGCGATAATCTCCTaGAATATACATCCACTTCAT +
Preference number: 5 (lower is better)
Translates to: KQEYIHRYCPSGAQPGTLLAIIS*NIHPLH
Trigger: ATGAAGTGGATGTATATTCAAGGAGATTATCGCAAG...GAGAGTTCCAGGCTGGGCACCTGAGGGACAATACCTGTGGATATACTCTTGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CAA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGCATGTCTATTCTCATTaGGAACCAGCGCAAGGTTGC +
Preference number: 5 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSHVYSH*EPAQGC
Trigger: GCAACCTTGCGCTGGTTCCAAATGAGAATAGACATG...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS CCA 90 bp GAAGCTTGTTCTCTGTCCCATTCTCTTTCTAGTTTTTCAGACAAGTaGTCAGCTGAATCAGCAGAAGGGGCTTGGTATATGTCTGACAAC +
Preference number: 5 (lower is better)
Translates to: EACSLSHSLSSFSDK*SAESAEGAWYMSDN
Trigger: GTTGTCAGACATATACCAAGCCCCTTCTGCTGATTCAGCTGACCACTTGTCTGAAAAACTAGAAAGAGAATGGGACAGAGAACAAGCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000129452.8
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGCAGCTGAAGAAGAGTTaGGAGATAAAGCTGGCTTTC +
Preference number: 5 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSQLKKS*EIKLAF
Trigger: GAAAGCCAGCTTTATCTCCAAACTCTTCTTCAGCTG...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp CGTAGGTATGTGTTCCATGTTGTCACCGGGGGTATCTTGATCACATCATCAAGATCTCCAAGAACTGTGTaGTCTTGTTCTGCAAACTTG +
Preference number: 5 (lower is better)
Translates to: RRYVFHVVTGGILITSSRSPRTV*SCSANL
Trigger: CAAGTTTGCAGAACAAGACAACACAGTTCTTGGAGA...TCTTGATGATGTGATCAAGATACCCCCGGTGACAACATGGAACACATACCTACG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp AATTTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGGCCTTCAGATTCCAGTaGTTTGAGCTGCTGTGCTGT +
Preference number: 5 (lower is better)
Translates to: NFQDLDILNPDGLLDHQMAFRFQ*FELLCC
Trigger: ACAGCACAGCAGCTCAAACAACTGGAATCTGAAGGC...CATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CAA 90 bp TGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACTCGTACTGCCAGACATaGCTCTCTTCTATGACCAAA +
Preference number: 5 (lower is better)
Translates to: CCLRTTQMGTRFTSARLHSYCQT*LSSMTK
Trigger: TTTGGTCATAGAAGAGAGCAATGTCTGGCAGTACGA...GTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS GCA 90 bp ATCATTCCAAAAGAATCATACCATATCTGTACGGCAGTGGGGAACTaGCGTGTGACTGACATACGTAGGACAATGCAGAATGAAATGGTT +
Preference number: 5 (lower is better)
Translates to: IIPKESYHICTAVGN*RVTDIRRTMQNEMV
Trigger: AACCATTTCATTCTGCATTGTCCTACGTATGTCAGTCACACGGCAGTTCCCCACTGCCGTACAGATATGGTATGATTCTTTTGGAATGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000129452.8
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp ACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTGGGGGACAGTCTCTTTTCTaGGAGATCATCAGACTCTCC +
Preference number: 5 (lower is better)
Translates to: TNTTFLHFRSLKDLLLSGGQSLF*EIIRLS
Trigger: GGAGAGTCTGATGATCTCCAAGAAAAGAGACTGTCC...CCCAGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CAA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGTCTTTCCATTTTCCATaGGGATCCAGGTTTTGTCTG +
Preference number: 5 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSSFHFP*GSRFCL
Trigger: CAGACAAAACCTGGATCCCAATGGAAAATGGAAAGA...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CAA 90 bp ACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACAACATGAAGTTGAATTCCACAAGGGTAAAGTaGAGCTGTCCAGGAAACTGC +
Preference number: 5 (lower is better)
Translates to: TQMGTRFTSARLHNMKLNSTRVK*SCPGNC
Trigger: GCAGTTTCCTGGACAGCTCAACTTTACCCTTGTGGA...ATTCAACTTCATGTTGTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CAA 90 bp TGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACTCAAGCAGTATGATCTaGGCCTTACTGAGAACTGAT +
Preference number: 5 (lower is better)
Translates to: CCLRTTQMGTRFTSARLHSSSMI*ALLRTD
Trigger: ATCAGTTCTCAGTAAGGCCAAGATCATACTGCTTGA...GTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CAA 90 bp CGTAGGTATGTGTTCCATGTTGTCACCGGGGGTATCTTGATCACATCATCAAGACTAAATAGGGAGACCTaGTCCTTTGTCTGTAAACAA +
Preference number: 5 (lower is better)
Translates to: RRYVFHVVTGGILITSSRLNRET*SFVCKQ
Trigger: TTGTTTACAGACAAAGGACAAGGTCTCCCTATTTAG...TCTTGATGATGTGATCAAGATACCCCCGGTGACAACATGGAACACATACCTACG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000140407.8
CDS GCA 90 bp TCTCCAAGAACTGTGTTGTCTTGTTCTGCAAACTTGGTGATGTCCTaGTGTAGTTGGCAAGCTTTGACAACACTCTTATATCTGTACTCA +
Preference number: 5 (lower is better)
Translates to: SPRTVLSCSANLVMS*CSWQALTTLLYLYS
Trigger: TGAGTACAGATATAAGAGTGTTGTCAAAGCTTGCCAACTACAGCAGGACATCACCAAGTTTGCAGAACAAGACAACACAGTTCTTGGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp TGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACCAGTACTTTATACTCTaGTTTCTGCAGGAAATCCTG +
Preference number: 5 (lower is better)
Translates to: CCLRTTQMGTRFTSARLHQYFIL*FLQEIL
Trigger: CAGGATTTCCTGCAGAAACAAGAGTATAAAGTACTG...GTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp CTACAATGGGCTCATGTGTTTGAAAACATTATTTCCAGTTGGGGGTACACTGGGTGTTTTCTGTCACCATaGCTTTGTTGTACTTTCTCC +
Preference number: 5 (lower is better)
Translates to: LQWAHVFENIISSWGYTGCFLSP*LCCTFS
Trigger: GGAGAAAGTACAACAAAGCAATGGTGACAGAAAACA...CCCAGTGTACCCCCAACTGGAAATAATGTTTTCAAACACATGAGCCCATTGTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR CAA 90 bp TTGAACTCTCTTCCAAAACAGTCTCTTAAAGAGCAAGTCGCAGGCTTCACCCTTCCACTGTTAACAGGGTaGTTTTTAAGCAACCATAAC +
Preference number: 5 (lower is better)
Translates to: LNSLPKQSLKEQVAGFTLPLLTG*FLSNHN
Trigger: GTTATGGTTGCTTAAAAACAACCCTGTTAACAGTGG...AAGGGTGAAGCCTGCGACTTGCTCTTTAAGAGACTGTTTTGGAAGAGAGTTCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CAA 90 bp AAAAGAGAGCATGTGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCCTAGAGACGGGTTTCTaGAACTTCTTCTTCTGTCTC +
Preference number: 5 (lower is better)
Translates to: KREHVLSENHTDGYKIYILETGF*NFFFCL
Trigger: GAGACAGAAGAAGAAGTTCAAGAAACCCGTCTCTAG...GATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACACATGCTCTCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CAA 90 bp TGCACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTCAGCTGAAGAAGAGTTaGGAGATAAAGCTGGCTTTC +
Preference number: 5 (lower is better)
Translates to: CTNTTFLHFRSLKDLLLSQLKKS*EIKLAF
Trigger: GAAAGCCAGCTTTATCTCCAAACTCTTCTTCAGCTG...AGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp AATACCTACAATGGGCTCATGTGTTTGAAAACATTATTTCCAGTTGGGGGTACACAGCTGAAGAAGAGTTaGGAGATAAAGCTGGCTTTC +
Preference number: 5 (lower is better)
Translates to: NTYNGLMCLKTLFPVGGTQLKKS*EIKLAF
Trigger: GAAAGCCAGCTTTATCTCCAAACTCTTCTTCAGCTG...TGTACCCCCAACTGGAAATAATGTTTTCAAACACATGAGCCCATTGTAGGTATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR CAA 90 bp TTCCAAGACCTGGATATCCTTAATCCTGATGGGTTACTAGATCACCAGATGTCGAGTCCTTCATCAAATTaGTTCAGGTTGTTGGAAAGA +
Preference number: 5 (lower is better)
Translates to: FQDLDILNPDGLLDHQMSSPSSN*FRLLER
Trigger: TCTTTCCAACAACCTGAACAAATTTGATGAAGGACT...CGACATCTGGTGATCTAGTAACCCATCAGGATTAAGGATATCCAGGTCTTGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp AAAAGAGAGCATGTGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCTCTCCAAGAACTGTGTaGTCTTGTTCTGCAAACTTG +
Preference number: 5 (lower is better)
Translates to: KREHVLSENHTDGYKIYISPRTV*SCSANL
Trigger: CAAGTTTGCAGAACAAGACAACACAGTTCTTGGAGA...GATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACACATGCTCTCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp ATATCAAGGAAATTATCCAGGCCACTTTATGGGACTGAAACAGTTCTTTTCCTATTGCTAAAGAAATCCTaGCACGCTGACCTCCACTCA +
Preference number: 5 (lower is better)
Translates to: ISRKLSRPLYGTETVLFLLLKKS*HADLHS
Trigger: TGAGTGGAGGTCAGCGTGCAAGGATTTCTTTAGCAA...TAGGAAAAGAACTGTTTCAGTCCCATAAAGTGGCCTGGATAATTTCCTTGATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp TTCCTCAGTAAACTGGTCAAAAGTATCATACCCCATGAGTTTCGAACTGAAGTCTGTTTTCTGTCACCATaGCTTTGTTGTACTTTCTCC +
Preference number: 5 (lower is better)
Translates to: FLSKLVKSIIPHEFRTEVCFLSP*LCCTFS
Trigger: GGAGAAAGTACAACAAAGCAATGGTGACAGAAAACA...GACTTCAGTTCGAAACTCATGGGGTATGATACTTTTGACCAGTTTACTGAGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp AAAAGAGAGCATGTGTTGTCTGAGAACCACACAGATGGGTACAAGATTTACATCAGGTCTCAGTTAGAATaGAACTTCTTCTTTCCTCAG +
Preference number: 5 (lower is better)
Translates to: KREHVLSENHTDGYKIYIRSQLE*NFFFPQ
Trigger: CTGAGGAAAGAAGAAGTTCAATTCTAACTGAGACCT...GATGTAAATCTTGTACCCATCTGTGTGGTTCTCAGACAACACATGCTCTCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS TCA 90 bp TTCAAATTGATGTTTTTCAGCACAGGATTTCCCACAAGGCAGAGATaGCTGAAACTGACATTGTTCTCATCACTGGAATGTTTTCTGTCA +
Preference number: 5 (lower is better)
Translates to: FKLMFFSTGFPTRQR*LKLTLFSSLECFLS
Trigger: TGACAGAAAACATTCCAGTGATGAGAACAATGTCAGTTTCAGTCATCTCTGCCTTGTGGGAAATCCTGTGCTGAAAAACATCAATTTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000129452.8
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp ATTCTTGCCCAGAAAAACTCTTCTAAAAACAGATCTGGTAACAAGCCCAGAACATATCAAGAACGCGGCTaGACAACTTTAAAGTCTTCT +
Preference number: 5 (lower is better)
Translates to: ILAQKNSSKNRSGNKPRTYQERG*TTLKSS
Trigger: AGAAGACTTTAAAGTTGTCAAGCCGCGTTCTTGATA...TGTTCTGGGCTTGTTACCAGATCTGTTTTTAGAAGAGTTTTTCTGGGCAAGAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR CAA 90 bp ATAAGTGTGTCGATTTCCATATCAAGGAAATTATCCAGGCCACTTTATGGGACTTATCAAGAACGCGGCTaGACAACTTTAAAGTCTTCT +
Preference number: 5 (lower is better)
Translates to: ISVSISISRKLSRPLYGTYQERG*TTLKSS
Trigger: AGAAGACTTTAAAGTTGTCAAGCCGCGTTCTTGATA...AGTCCCATAAAGTGGCCTGGATAATTTCCTTGATATGGAAATCGACACACTTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp TTCCTCAGTAAACTGGTCAAAAGTATCATACCCCATGAGTTTCGAACTGAAGTCAGTCCTTCATCAAATTaGTTCAGGTTGTTGGAAAGA +
Preference number: 5 (lower is better)
Translates to: FLSKLVKSIIPHEFRTEVSPSSN*FRLLER
Trigger: TCTTTCCAACAACCTGAACAAATTTGATGAAGGACT...GACTTCAGTTCGAAACTCATGGGGTATGATACTTTTGACCAGTTTACTGAGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp ATTCTTGCCCAGAAAAACTCTTCTAAAAACAGATCTGGTAACAAGCCCAGAACACAGTACTTTATACTCTaGTTTCTGCAGGAAATCCTG +
Preference number: 5 (lower is better)
Translates to: ILAQKNSSKNRSGNKPRTQYFIL*FLQEIL
Trigger: CAGGATTTCCTGCAGAAACAAGAGTATAAAGTACTG...TGTTCTGGGCTTGTTACCAGATCTGTTTTTAGAAGAGTTTTTCTGGGCAAGAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS-3UTR CAA 90 bp ACACAGATGGGTACAAGATTTACATCAGCTCGTCTTCACAACATGAAGTTGAATTGTTTTCTGTCACCATaGCTTTGTTGTACTTTCTCC +
Preference number: 5 (lower is better)
Translates to: TQMGTRFTSARLHNMKLNCFLSP*LCCTFS
Trigger: GGAGAAAGTACAACAAAGCAATGGTGACAGAAAACA...ATTCAACTTCATGTTGTGAAGACGAGCTGATGTAAATCTTGTACCCATCTGTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp ACTAACACAACCTTCCTTCACTTCAGAAGTCTTAAAGATCTGTTGCTTTCTGGGGAAATTTTAGTACCATaGTTTCCACTGTTAACAGGG +
Preference number: 5 (lower is better)
Translates to: TNTTFLHFRSLKDLLLSGEILVP*FPLLTG
Trigger: CCCTGTTAACAGTGGAAACAATGGTACTAAAATTTC...CCCAGAAAGCAACAGATCTTTAAGACTTCTGAAGTGAAGGAAGGTTGTGTTAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045706.12
CDS-3UTR CAA 90 bp ATAAGTGTGTCGATTTCCATATCAAGGAAATTATCCAGGCCACTTTATGGGACTAGTCCTTCATCAAATTaGTTCAGGTTGTTGGAAAGA +
Preference number: 5 (lower is better)
Translates to: ISVSISISRKLSRPLYGTSPSSN*FRLLER
Trigger: TCTTTCCAACAACCTGAACAAATTTGATGAAGGACT...AGTCCCATAAAGTGGCCTGGATAATTTCCTTGATATGGAAATCGACACACTTAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp GCAATACATATCTTAGAGGAAAGTAAGTTGGGCTTTGAGTTATATAAGACACTGCAGTACTTTATACTCTaGTTTCTGCAGGAAATCCTG +
Preference number: 5 (lower is better)
Translates to: AIHILEESKLGFELYKTLQYFIL*FLQEIL
Trigger: CAGGATTTCCTGCAGAAACAAGAGTATAAAGTACTG...CAGTGTCTTATATAACTCAAAGCCCAACTTACTTTCCTCTAAGATATGTATTGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp GTACCATTGTTTCCACTGTTAACAGGGTTGTTTTTAAGCAACCATAACACAAATTGTTTTCTGTCACCATaGCTTTGTTGTACTTTCTCC +
Preference number: 5 (lower is better)
Translates to: VPLFPLLTGLFLSNHNTNCFLSP*LCCTFS
Trigger: GGAGAAAGTACAACAAAGCAATGGTGACAGAAAACA...ATTTGTGTTATGGTTGCTTAAAAACAACCCTGTTAACAGTGGAAACAATGGTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115405.9
ENSMUST00000140407.8
CDS TCA 90 bp AAGATGATATTTTCTTTGATAGTACCCGGCATAATCCAAGAAAATTaGGAGCAGAATGAAACTCTTCCACTGTGCTTAATAATTCCCTCT +
Preference number: 5 (lower is better)
Translates to: KMIFSLIVPGIIQEN*EQNETLPLCLIIPS
Trigger: AGAGGGAATTATTAAGCACAGTGGAAGAGTTTCATTCTGCTCTCAATTTTCTTGGATTATGCCGGGTACTATCAAAGAAAATATCATCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000129452.8
ENSMUST00000140407.8
CDS-3UTR CAA 90 bp TACAATTTTCTTCATCTAAGCATTCCAATGATCTACCTGTGTCCAGAATGTTGTAGTCCTTCATCAAATTaGTTCAGGTTGTTGGAAAGA +
Preference number: 5 (lower is better)
Translates to: YNFLHLSIPMIYLCPECCSPSSN*FRLLER
Trigger: TCTTTCCAACAACCTGAACAAATTTGATGAAGGACT...ACAACATTCTGGACACAGGTAGATCATTGGAATGCTTAGATGAAGAAAATTGTA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129452.8
CDS TCA 72 bp CATACCATATCTGTACGGCAGTGGGGAACTGCCGTGTaGCTGACATACGTAGGACAATGCAGAATGAAATGG +
Preference number: 6 (lower is better)
Translates to: HTISVRQWGTAV*LTYVGQCRMKW
Trigger: CCATTTCATTCTGCATTGTCCTACGTATGTCAGTCACACGGCAGTTCCCCACTGCCGTACAGATATGGTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000129452.8
ENSMUST00000140407.8
CDS TCA 72 bp CTTGTCCTTTGTCTTGCTAAAGAAATCCTTGCACGCTaGCCTCCACTCAGTGTGACTCCACCTTCTCCAAGA +
Preference number: 6 (lower is better)
Translates to: LVLCLAKEILAR*PPLSVTPPSPR
Trigger: TCTTGGAGAAGGTGGAGTCACACTGAGTGGAGGTCAGCGTGCAAGGATTTCTTTAGCAAGACAAAGGACAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115405.9
CDS CCA 72 bp GCAGAAGGGGCTTGGTATATGTCTGACAACTCCAAGTaGTGTCTGTACCCTTTCCTCAAAATTGGTGTGGTC +
Preference number: 6 (lower is better)
Translates to: AEGAWYMSDNSK*CLYPFLKIGVV
Trigger: GACCACACCAATTTTGAGGAAAGGGTACAGACACCACTTGGAGTTGTCAGACATATACCAAGCCCCTTCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000129452.8
ENSMUST00000140407.8
CDS CCA 72 bp TCAGACAAGTGGTCAGCTGAATCAGCAGAAGGGGCTTaGTATATGTCTGACAACTCCAAGTGGTGTCTGTAC +
Preference number: 6 (lower is better)
Translates to: SDKWSAESAEGA*YMSDNSKWCLY
Trigger: GTACAGACACCACTTGGAGTTGTCAGACATATACCAAGCCCCTTCTGCTGATTCAGCTGACCACTTGTCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000129452.8
ENSMUST00000140407.8
CDS TCA 72 bp CAAATGAGAAACCTTGCTAAAGAAATCCTTGCACGCTaGCCTCCACTCAGTGTGACTCCACCTTCTCCAAGA +
Preference number: 6 (lower is better)
Translates to: QMRNLAKEILAR*PPLSVTPPSPR
Trigger: TCTTGGAGAAGGTGGAGTCACACTGAGTGGAGGTCAGCGTGCAAGGATTTCTTTAGCAAGGTTTCTCATTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140407.8
CDS TCA 72 bp TTATATACTGCTCTTGCTAAAGAAATCCTTGCACGCTaGCCTCCACTCAGTGTGACTCCACCTTCTCCAAGA +
Preference number: 6 (lower is better)
Translates to: LYTALAKEILAR*PPLSVTPPSPR
Trigger: TCTTGGAGAAGGTGGAGTCACACTGAGTGGAGGTCAGCGTGCAAGGATTTCTTTAGCAAGAGCAGTATATAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045706.12
ENSMUST00000115406.2
CDS GCA 72 bp AAAGAATCATACCATATCTGTACGGCAGTGGGGAACTaGCGTGTGACTGACATACGTAGGACAATGCAGAAT +
Preference number: 6 (lower is better)
Translates to: KESYHICTAVGN*RVTDIRRTMQN
Trigger: ATTCTGCATTGTCCTACGTATGTCAGTCACACGGCAGTTCCCCACTGCCGTACAGATATGGTATGATTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000129452.8
ENSMUST00000140407.8
CDS CAA 72 bp CCTTCTCCAAGAACTGTGTTGTCTTGTTCTGCAAACTaGGTGATGTCCTGCTGTAGTTGGCAAGCTTTGACA +
Preference number: 6 (lower is better)
Translates to: PSPRTVLSCSAN*VMSCCSWQALT
Trigger: TGTCAAAGCTTGCCAACTACAGCAGGACATCACCAAGTTTGCAGAACAAGACAACACAGTTCTTGGAGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000140407.8
CDS CCA 72 bp TCTCTGTCCCATTCTCTTTCTAGTTTTTCAGACAAGTaGTCAGCTGAATCAGCAGAAGGGGCTTGGTATATG +
Preference number: 6 (lower is better)
Translates to: SLSHSLSSFSDK*SAESAEGAWYM
Trigger: CATATACCAAGCCCCTTCTGCTGATTCAGCTGACCACTTGTCTGAAAAACTAGAAAGAGAATGGGACAGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000129452.8
ENSMUST00000140407.8
CDS CCA 72 bp AGAGAAGGCATAAGCCTATGCCAAGGTAAATGGCAATaGAACGTTCCACCTTGTTTTCTGGATCATAGGATG +
Preference number: 6 (lower is better)
Translates to: REGISLCQGKWQ*NVPPCFLDHRM
Trigger: CATCCTATGATCCAGAAAACAAGGTGGAACGTTCCATTGCCATTTACCTTGGCATAGGCTTATGCCTTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000129452.8
ENSMUST00000140407.8
CDS TCA 72 bp GTGATCACGAGTCTTTCATTGATCTTTGCAGCTCTCTaGTCTCTGTACTTCACCATCATCTTCCCTAGGATA +
Preference number: 6 (lower is better)
Translates to: VITSLSLIFAAL*SLYFTIIFPRI
Trigger: TATCCTAGGGAAGATGATGGTGAAGTACAGAGATCAGAGAGCTGCAAAGATCAATGAAAGACTCGTGATCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000129452.8
ENSMUST00000140407.8
CDS GCA 72 bp ACTGTGTTGTCTTGTTCTGCAAACTTGGTGATGTCCTaGTGTAGTTGGCAAGCTTTGACAACACTCTTATAT +
Preference number: 6 (lower is better)
Translates to: TVLSCSANLVMS*CSWQALTTLLY
Trigger: ATATAAGAGTGTTGTCAAAGCTTGCCAACTACAGCAGGACATCACCAAGTTTGCAGAACAAGACAACACAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000140407.8
CDS TCA 72 bp CACCTCTCTCAAGTTTTCAATCATTTTCTCCATCGCTaGTTCCCAACAATATGCCTTAACAGAATAGATATT +
Preference number: 6 (lower is better)
Translates to: HLSQVFNHFLHR*FPTICLNRIDI
Trigger: AATATCTATTCTGTTAAGGCATATTGTTGGGAATCAGCGATGGAGAAAATGATTGAAAACTTGAGAGAGGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000129452.8
ENSMUST00000140407.8
CDS TCA 72 bp TTTTCTTTGATAGTACCCGGCATAATCCAAGAAAATTaGGAGCAGAATGAAACTCTTCCACTGTGCTTAATA +
Preference number: 6 (lower is better)
Translates to: FSLIVPGIIQEN*EQNETLPLCLI
Trigger: TATTAAGCACAGTGGAAGAGTTTCATTCTGCTCTCAATTTTCTTGGATTATGCCGGGTACTATCAAAGAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045706.12
ENSMUST00000115405.9
ENSMUST00000115406.2
ENSMUST00000129452.8
ENSMUST00000140407.8