RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CFLAR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026031

Ensembl transcript IDs: ENSMUST00000069333.8, ENSMUST00000097722.9, ENSMUST00000114309.8, ENSMUST00000114313.8

Found 254 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGGCAGAGCCAGAAGCAGCCAGAAGCAGCCGTAACCGCCAAGCTCTaGTCCAAGCCGCCACCCTGGATGATATACCAAGAACACCAACGG +
Preference number: 1 (lower is better)
Translates to: RQSQKQPEAAVTAKL*SKPPPWMIYQEHQR
Trigger: CCGTTGGTGTTCTTGGTATATCATCCAGGGTGGCGGCTTGGAGCAGAGCTTGGCGGTTACGGCTGCTTCTGGCTGCTTCTGGCTCTGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR CCA 90 bp GCCAACCAGGGCAAGCTCCCCCACTCACTGTTGTGTTCTTGGGGCTaGCTCTACTGTGCTGCCCAGGCAAGGTACAGACTGCTCTCCCAA +
Preference number: 1 (lower is better)
Translates to: ANQGKLPHSLLCSWG*LYCAAQARYRLLSQ
Trigger: TTGGGAGAGCAGTCTGTACCTTGCCTGGGCAGCACAGTAGAGCCAGCCCCAAGAACACAACAGTGAGTGGGGGAGCTTGCCCTGGTTGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR TCA 90 bp TGTGCATGGGTCGTGCACCCTTGCGGAGATCGGTGGACAGCTTTCTaGCGCTGGAGCACTCCTTCCTGGGGATTCAGTGTTCAGACCTGG +
Preference number: 1 (lower is better)
Translates to: CAWVVHPCGDRWTAF*RWSTPSWGFSVQTW
Trigger: CCAGGTCTGAACACTGAATCCCCAGGAAGGAGTGCTCCAGCGTCAGAAAGCTGTCCACCGATCTCCGCAAGGGTGCACGACCCATGCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CCA 90 bp CCACATGTGCACGGGTCCTGTTCTGTCTGGAAGATGCGGCTTCCCTaGAGCCCTTCACCACCTCTGGCTCTCACAGTCTTTCTGCCTCCT +
Preference number: 1 (lower is better)
Translates to: PHVHGSCSVWKMRLP*SPSPPLALTVFLPP
Trigger: AGGAGGCAGAAAGACTGTGAGAGCCAGAGGTGGTGAAGGGCTCCAGGGAAGCCGCATCTTCCAGACAGAACAGGACCCGTGCACATGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR GCA 90 bp TACAACCTTCAAGGAGTAGGGCTCATTCTCCTTCACCGAAGCCACTaGACAGCTGGTGAGGGTCAGGCCAGCCCTCCTGTGCTCATGGGT +
Preference number: 1 (lower is better)
Translates to: YNLQGVGLILLHRSH*TAGEGQASPPVLMG
Trigger: ACCCATGAGCACAGGAGGGCTGGCCTGACCCTCACCAGCTGTGCAGTGGCTTCGGTGAAGGAGAATGAGCCCTACTCCTTGAAGGTTGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR TCA 90 bp TACATCTCTCCCTCTGACGAGACAACCCTGAGGGTTGAACACTCCTaGTTCCCACTGTGCTCAGGTGTGAGCACAATGGCCCACAACTTC +
Preference number: 1 (lower is better)
Translates to: YISPSDETTLRVEHS*FPLCSGVSTMAHNF
Trigger: GAAGTTGTGGGCCATTGTGCTCACACCTGAGCACAGTGGGAATCAGGAGTGTTCAACCCTCAGGGTTGTCTCGTCAGAGGGAGAGATGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR GCA 90 bp ATGGAAGCCATGAGCCCGAGGAGGCTGAAGCAAGAGGAGGCTCATTaGAAGTTCAAGGCCAGCCTAGGTTACATAATGGATTCCAGGCCA +
Preference number: 1 (lower is better)
Translates to: MEAMSPRRLKQEEAH*KFKASLGYIMDSRP
Trigger: TGGCCTGGAATCCATTATGTAACCTAGGCTGGCCTTGAACTTGCAATGAGCCTCCTCTTGCTTCAGCCTCCTCGGGCTCATGGCTTCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
3UTR GCA 90 bp AGTCTGGCCTCAAACTTGTGGCAATCCTCCTGCCTCTGTAGGAACTaGCATGCCTGGCTGATTCTGTCTCTTGTTCACCACTCAGCTACC +
Preference number: 1 (lower is better)
Translates to: SLASNLWQSSCLCRN*HAWLILSLVHHSAT
Trigger: GGTAGCTGAGTGGTGAACAAGAGACAGAATCAGCCAGGCATGGCAGTTCCTACAGAGGCAGGAGGATTGCCACAAGTTTGAGGCCAGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR TCA 90 bp TTCTCCACACCAGGACCACATCCACCTCCTGACACCATCCATCACTaGCACCATCACTGTGCACATCTGCCCCAGCTAAAAGTCACTCTT +
Preference number: 1 (lower is better)
Translates to: FSTPGPHPPPDTIHH*HHHCAHLPQLKVTL
Trigger: AAGAGTGACTTTTAGCTGGGGCAGATGTGCACAGTGATGGTGTCAGTGATGGATGGTGTCAGGAGGTGGATGTGGTCCTGGTGTGGAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR TCA 90 bp ATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCTGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACT +
Preference number: 1 (lower is better)
Translates to: ILLQMVVSHHVVAGI*TLDLWKSSRVLLPT
Trigger: AGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CCA 90 bp GAGTCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCGGGTGCTCTT +
Preference number: 1 (lower is better)
Translates to: ESDLVTDGCEPPCGC*DLNSGPLEEQSGAL
Trigger: AAGAGCACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CCA 90 bp GCTGCCCCTAAATCCCGTTATTTCCCTTCATGTCCAAGGGTAATCTaGGGCAGTTTGTTAATTCTGCTCCCTTTTCACCAGGGATGGAGC +
Preference number: 1 (lower is better)
Translates to: AAPKSRYFPSCPRVI*GSLLILLPFHQGWS
Trigger: GCTCCATCCCTGGTGAAAAGGGAGCAGAATTAACAAACTGCCCCAGATTACCCTTGGACATGAAGGGAAATAACGGGATTTAGGGGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR TCA 90 bp GTCCATTTTATGTTAGCCAATTACTCCTGGGTCTGGGGCCTGCCCTaGCGGGTAATGGATATGTCCAATAACACTCCACTGGAGAAAGCT +
Preference number: 1 (lower is better)
Translates to: VHFMLANYSWVWGLP*RVMDMSNNTPLEKA
Trigger: AGCTTTCTCCAGTGGAGTGTTATTGGACATATCCATTACCCGTCAGGGCAGGCCCCAGACCCAGGAGTAATTGGCTAACATAAAATGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR GCA 90 bp GGTACAAATAGTGCAGAGACCACCAGCTACGAATCACATTGTTCCTaGCTTCTGGGCAGAAACAGGTTATACATCTCTCCCTCTGACGAG +
Preference number: 1 (lower is better)
Translates to: GTNSAETTSYESHCS*LLGRNRLYISPSDE
Trigger: CTCGTCAGAGGGAGAGATGTATAACCTGTTTCTGCCCAGAAGGCAGGAACAATGTGATTCGTAGCTGGTGGTCTCTGCACTATTTGTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CCA 90 bp CAGGCAAACACACAATCTCATTACACAGCTACTACATACCTAGACTaGTTCAGAACATGTGATCCTTTGGCCTCCCCCACGCTAGTACTG +
Preference number: 1 (lower is better)
Translates to: QANTQSHYTATTYLD*FRTCDPLASPTLVL
Trigger: CAGTACTAGCGTGGGGGAGGCCAAAGGATCACATGTTCTGAACCAGTCTAGGTATGTAGTAGCTGTGTAATGAGATTGTGTGTTTGCCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR TCA 90 bp TCTCACAGTCTTTCTGCCTCCTCTTCAGAACAGGTCCCTAAACCCTaGGGGGAGGGGTTTGACTACTATCCTCAAATACAGATAGATTAT +
Preference number: 1 (lower is better)
Translates to: SHSLSASSSEQVPKP*GEGFDYYPQIQIDY
Trigger: ATAATCTATCTGTATTTGAGGATAGTAGTCAAACCCCTCCCCTCAGGGTTTAGGGACCTGTTCTGAAGAGGAGGCAGAAAGACTGTGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR GCA 90 bp GGAACAATATCTAAGGAGTCTCTGTTCAGAAGAGCAGACATGATATaGTACCACTTGTATAAAAGTAGACACTCTGTGGGTAGATTCTCT +
Preference number: 1 (lower is better)
Translates to: GTISKESLFRRADMI*YHLYKSRHSVGRFS
Trigger: AGAGAATCTACCCACAGAGTGTCTACTTTTATACAAGTGGTAGCATATCATGTCTGCTCTTCTGAACAGAGACTCCTTAGATATTGTTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
3UTR GCA 90 bp ACATCAGTGAATCAACAGAATACAATTAAGTTCACAAATAGGCCCTaGAAACACAACCCACTGACCTCTGAAAAGCATCAAAGCAATTCA +
Preference number: 1 (lower is better)
Translates to: TSVNQQNTIKFTNRP*KHNPLTSEKHQSNS
Trigger: TGAATTGCTTTGATGCTTTTCAGAGGTCAGTGGGTTGTGTTTGCAGGGCCTATTTGTGAACTTAATTGTATTCTGTTGATTCACTGATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR-3UTR TCA 90 bp TCCTGCAGCCTTAGTTCTACAGGACCCGCCCCTTCACAGGCTCTGGCAGTTCACGCACGGCGGCGGGAGTaGGACGTTTCCCAGGCACAG +
Preference number: 2 (lower is better)
Translates to: SCSLSSTGPAPSQALAVHARRRE*DVSQAQ
Trigger: CTGTGCCTGGGAAACGTCTCACTCCCGCCGCCGTGC...GTGAACTGCCAGAGCCTGTGAAGGGGCGGGTCCTGTAGAACTAAGGCTGCAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR CAA 90 bp ATCCTGAGCCAACCAGGGCAAGCTCCCCCACTCACTGTTGTGTTCTaGGGGCTGGCTCTACTGTGCTGCCCAGGCAAGGTACAGACTGCT +
Preference number: 2 (lower is better)
Translates to: ILSQPGQAPPLTVVF*GLALLCCPGKVQTA
Trigger: AGCAGTCTGTACCTTGCCTGGGCAGCACAGTAGAGCCAGCCCCAAGAACACAACAGTGAGTGGGGGAGCTTGCCCTGGTTGGCTCAGGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR-3UTR CCA 90 bp TGGTCATCCCTCCTGTTCCTGATCCTGAGCCAACCAGGGCAAGCTCCCCCACTCTTGTGTTCTTGGGGCTaGCTCTACTGTGCTGCCCAG +
Preference number: 2 (lower is better)
Translates to: WSSLLFLILSQPGQAPPLLCSWG*LYCAAQ
Trigger: CTGGGCAGCACAGTAGAGCCAGCCCCAAGAACACAA...GAGTGGGGGAGCTTGCCCTGGTTGGCTCAGGATCAGGAACAGGAGGGATGACCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR-3UTR CCA 90 bp AGGACCCGCCCCTTCACAGGCTCTGGCAGTTCACAGATGATATGGATGCTGGGGTTGTGTTCTTGGGGCTaGCTCTACTGTGCTGCCCAG +
Preference number: 2 (lower is better)
Translates to: RTRPFTGSGSSQMIWMLGLCSWG*LYCAAQ
Trigger: CTGGGCAGCACAGTAGAGCCAGCCCCAAGAACACAA...CCCCAGCATCCATATCATCTGTGAACTGCCAGAGCCTGTGAAGGGGCGGGTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR-3UTR TCA 90 bp TCCCCCAGTAACAGTTCCTCTAGCGAGGCCACACCTTTCAAACAGCACACCTGGCTGGCAGTTCACAGATaGTATGGATGCTGGGGTGGG +
Preference number: 2 (lower is better)
Translates to: SPSNSSSSEATPFKQHTWLAVHR*YGCWGG
Trigger: CCCACCCCAGCATCCATATCATCTGTGAACTGCCAG...CCAGGTGTGCTGTTTGAAAGGTGTGGCCTCGCTAGAGGAACTGTTACTGGGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CAA 90 bp CCCACAACTTCGTCTCCCTTTCTCAGTGTTGGGACTCTGTCTGGTTaGAACCTGTGCTGTCAGCCACATGTGCACGGGTCCTGTTCTGTC +
Preference number: 2 (lower is better)
Translates to: PTTSSPFLSVGTLSG*NLCCQPHVHGSCSV
Trigger: GACAGAACAGGACCCGTGCACATGTGGCTGACAGCACAGGTTCAAACCAGACAGAGTCCCAACACTGAGAAAGGGAGACGAAGTTGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR-3UTR GCA 90 bp TTGGCTCCTTCCCTTGACTTACGCTCTCTTCTCTATCACCACCTGCCAAGTCCCGCTGTCAGCCACATGTaGACGGGTCCTGTTCTGTCT +
Preference number: 2 (lower is better)
Translates to: LAPSLDLRSLLYHHLPSPAVSHM*TGPVLS
Trigger: AGACAGAACAGGACCCGTGCACATGTGGCTGACAGC...GGGACTTGGCAGGTGGTGATAGAGAAGAGAGCGTAAGTCAAGGGAAGGAGCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR-3UTR CCA 90 bp TGCCCTGTGTCATGGAGATCCTGCAGCCTTAGTTCTACAGGACCCGCCCCTTCATCACTGTTGTGTTCTTaGGGCTGGCTCTACTGTGCT +
Preference number: 2 (lower is better)
Translates to: CPVSWRSCSLSSTGPAPSSLLCS*GWLYCA
Trigger: AGCACAGTAGAGCCAGCCCCAAGAACACAACAGTGA...TGAAGGGGCGGGTCCTGTAGAACTAAGGCTGCAGGATCTCCATGACACAGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR-3UTR CCA 90 bp TCCCCCAGTAACAGTTCCTCTAGCGAGGCCACACCTTTCAAACAGCACACCTGGAGTTCACAGATGATATaGATGCTGGGGTGGGCCACC +
Preference number: 2 (lower is better)
Translates to: SPSNSSSSEATPFKQHTWSSQMI*MLGWAT
Trigger: GGTGGCCCACCCCAGCATCCATATCATCTGTGAACT...CCAGGTGTGCTGTTTGAAAGGTGTGGCCTCGCTAGAGGAACTGTTACTGGGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CAA 90 bp AATGGAAGCCATGAGCCCGAGGAGGCTGAAGCAAGAGGAGGCTCATaGCAAGTTCAAGGCCAGCCTAGGTTACATAATGGATTCCAGGCC +
Preference number: 2 (lower is better)
Translates to: NGSHEPEEAEARGGS*QVQGQPRLHNGFQA
Trigger: GGCCTGGAATCCATTATGTAACCTAGGCTGGCCTTGAACTTGCAATGAGCCTCCTCTTGCTTCAGCCTCCTCGGGCTCATGGCTTCCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
3UTR-3UTR TCA 90 bp TCCCCCAGTAACAGTTCCTCTAGCGAGGCCACACCTTTCAAACAGCACACCTGGGACACCATCCATCACTaGCACCATCACTGTGCACAT +
Preference number: 2 (lower is better)
Translates to: SPSNSSSSEATPFKQHTWDTIHH*HHHCAH
Trigger: ATGTGCACAGTGATGGTGTCAGTGATGGATGGTGTC...CCAGGTGTGCTGTTTGAAAGGTGTGGCCTCGCTAGAGGAACTGTTACTGGGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CAA 90 bp GATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCTGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCAC +
Preference number: 2 (lower is better)
Translates to: DLVTDGCEPPCGCWD*NSGPLEEQSGALTH
Trigger: GTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR-3UTR GCA 90 bp TATATCATGCACCCAACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTGCCTGGCTCTACTGTGCTaGCCAGGCAAGGTACAGACT +
Preference number: 2 (lower is better)
Translates to: YIMHPTPLMSPASLSTLCLALLC*PGKVQT
Trigger: AGTCTGTACCTTGCCTGGGCAGCACAGTAGAGCCAG...GCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGTTGGGTGCATGATATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR-3UTR GCA 90 bp ACAAGCACACAGAGTCCATTTTATGTTAGCCAATTACTCCTGGGTCTGGGGCCTCTGGCTCTACTGTGCTaGCCAGGCAAGGTACAGACT +
Preference number: 2 (lower is better)
Translates to: TSTQSPFYVSQLLLGLGPLALLC*PGKVQT
Trigger: AGTCTGTACCTTGCCTGGGCAGCACAGTAGAGCCAG...AGGCCCCAGACCCAGGAGTAATTGGCTAACATAAAATGGACTCTGTGTGCTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR-3UTR GCA 90 bp ATAGTGCAGAGACCACCAGCTACGAATCACATTGTTCCTGCCTTCTGGGCAGAATCTGGTTTGAACCTGTaGTGTCAGCCACATGTGCAC +
Preference number: 2 (lower is better)
Translates to: IVQRPPATNHIVPAFWAESGLNL*CQPHVH
Trigger: GTGCACATGTGGCTGACAGCACAGGTTCAAACCAGA...TTCTGCCCAGAAGGCAGGAACAATGTGATTCGTAGCTGGTGGTCTCTGCACTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR-3UTR CCA 90 bp ATAGTGCAGAGACCACCAGCTACGAATCACATTGTTCCTGCCTTCTGGGCAGAATCACTGTTGTGTTCTTaGGGCTGGCTCTACTGTGCT +
Preference number: 2 (lower is better)
Translates to: IVQRPPATNHIVPAFWAESLLCS*GWLYCA
Trigger: AGCACAGTAGAGCCAGCCCCAAGAACACAACAGTGA...TTCTGCCCAGAAGGCAGGAACAATGTGATTCGTAGCTGGTGGTCTCTGCACTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR-3UTR GCA 90 bp TATATCATGCACCCAACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTGCGCCTCTGGCTTCTGGTaGACTATAAATACTGGACCC +
Preference number: 2 (lower is better)
Translates to: YIMHPTPLMSPASLSTLCASGFW*TINTGP
Trigger: GGGTCCAGTATTTATAGTGCACCAGAAGCCAGAGGC...GCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGTTGGGTGCATGATATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR-3UTR CCA 90 bp TATATCATGCACCCAACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTGCCTGTTCTCCACACTCTaGCAAAACATCCGACTAAGG +
Preference number: 2 (lower is better)
Translates to: YIMHPTPLMSPASLSTLCLFSTL*QNIRLR
Trigger: CCTTAGTCGGATGTTTTGCCAGAGTGTGGAGAACAG...GCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGTTGGGTGCATGATATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR-3UTR CCA 90 bp AAAGCTTGTGTGTGTCCCTCAGTATTTCCGTGTGCCCACACATCTTCACTCATTTGTTGCCCTGTGTCATaGAGATCCTGCAGCCTTAGT +
Preference number: 2 (lower is better)
Translates to: KACVCPSVFPCAHTSSLICCPVS*RSCSLS
Trigger: ACTAAGGCTGCAGGATCTCCATGACACAGGGCAACA...AATGAGTGAAGATGTGTGGGCACACGGAAATACTGAGGGACACACACAAGCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR CAA 90 bp AAATCCCGTTATTTCCCTTCATGTCCAAGGGTAATCTGGGGCAGTTaGTTAATTCTGCTCCCTTTTCACCAGGGATGGAGCATGACACAG +
Preference number: 2 (lower is better)
Translates to: KSRYFPSCPRVIWGS*LILLPFHQGWSMTQ
Trigger: CTGTGTCATGCTCCATCCCTGGTGAAAAGGGAGCAGAATTAACAAACTGCCCCAGATTACCCTTGGACATGAAGGGAAATAACGGGATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR-3UTR CCA 90 bp ATAGTGCAGAGACCACCAGCTACGAATCACATTGTTCCTGCCTTCTGGGCAGAAGCCCTCCTGTGCTCATaGGTAACTATTTTTCTATCT +
Preference number: 2 (lower is better)
Translates to: IVQRPPATNHIVPAFWAEALLCS*VTIFLS
Trigger: AGATAGAAAAATAGTTACCCATGAGCACAGGAGGGC...TTCTGCCCAGAAGGCAGGAACAATGTGATTCGTAGCTGGTGGTCTCTGCACTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR-3UTR CCA 90 bp GCAATTATGCCTAGAATCTCAGCAAGCAGACAGAGGCAGAAGATAAATCCCACATGTTGCCCTGTGTCATaGAGATCCTGCAGCCTTAGT +
Preference number: 2 (lower is better)
Translates to: AIMPRISASRQRQKINPTCCPVS*RSCSLS
Trigger: ACTAAGGCTGCAGGATCTCCATGACACAGGGCAACA...TGTGGGATTTATCTTCTGCCTCTGTCTGCTTGCTGAGATTCTAGGCATAATTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR-3UTR GCA 90 bp AGCTTCCTTATCTACTCTCTGCCCTTGCAATCTGTTCCTGCCAAAGAAACAAAACAGATACCCTGTTGTTaGCCTGTGTCATGGAGATCC +
Preference number: 2 (lower is better)
Translates to: SFLIYSLPLQSVPAKETKQIPCC*PVSWRS
Trigger: GGATCTCCATGACACAGGGCAACAACAGGGTATCTG...TTTTGTTTCTTTGGCAGGAACAGATTGCAAGGGCAGAGAGTAGATAAGGAAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR-3UTR GCA 90 bp GCTTCCTTATCTACTCTCTGCCCTTGCAATCTGTTCCTGCCAAAGAAACAAAAACAGATACCCTGTTGTTaGCCTGTGTCATGGAGATCC +
Preference number: 2 (lower is better)
Translates to: ASLSTLCPCNLFLPKKQKQIPCC*PVSWRS
Trigger: GGATCTCCATGACACAGGGCAACAACAGGGTATCTG...TTTTTGTTTCTTTGGCAGGAACAGATTGCAAGGGCAGAGAGTAGATAAGGAAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR-3UTR GCA 90 bp TCATTGCAAGTTCAAGGCCAGCCTAGGTTACATAATGGATTCCAGGCCAGGCTGTGGGTAGATTCTCTGTaGATGGTTATAGAAGAAACT +
Preference number: 2 (lower is better)
Translates to: SLQVQGQPRLHNGFQARLWVDSL*MVIEET
Trigger: AGTTTCTTCTATAACCATGCACAGAGAATCTACCCA...CAGCCTGGCCTGGAATCCATTATGTAACCTAGGCTGGCCTTGAACTTGCAATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
3UTR-3UTR CCA 90 bp ATTTCCGTGTGCCCACACATCTTCACTCATTCACTTACATCTTTACTCAGTGCACTGTTCTCCACACTCTaGCAAAACATCCGACTAAGG +
Preference number: 2 (lower is better)
Translates to: ISVCPHIFTHSLTSLLSALFSTL*QNIRLR
Trigger: CCTTAGTCGGATGTTTTGCCAGAGTGTGGAGAACAG...TGCACTGAGTAAAGATGTAAGTGAATGAGTGAAGATGTGTGGGCACACGGAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR-3UTR CCA 90 bp CAGTATTTCCGTGTGCCCACACATCTTCACTCATTCACTTACATCTTTACTCAGGAGGCCTCTGGCTTCTaGTGCACTATAAATACTGGA +
Preference number: 2 (lower is better)
Translates to: QYFRVPTHLHSFTYIFTQEASGF*CTINTG
Trigger: TCCAGTATTTATAGTGCACCAGAAGCCAGAGGCCTC...CTGAGTAAAGATGTAAGTGAATGAGTGAAGATGTGTGGGCACACGGAAATACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR-3UTR CCA 90 bp TCATTGCAAGTTCAAGGCCAGCCTAGGTTACATAATGGATTCCAGGCCAGGCTGGGTTATAGAAGAAACTaGTCTAGATTAGTCTCCTTA +
Preference number: 2 (lower is better)
Translates to: SLQVQGQPRLHNGFQARLGYRRN*SRLVSL
Trigger: TAAGGAGACTAATCTAGACCAGTTTCTTCTATAACC...CAGCCTGGCCTGGAATCCATTATGTAACCTAGGCTGGCCTTGAACTTGCAATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
3UTR-3UTR CCA 90 bp GCAATTATGCCTAGAATCTCAGCAAGCAGACAGAGGCAGAAGATAAATCCCACATGTCCAAGGGTAATCTaGGGCAGTTTGTTAATTCTG +
Preference number: 2 (lower is better)
Translates to: AIMPRISASRQRQKINPTCPRVI*GSLLIL
Trigger: CAGAATTAACAAACTGCCCCAGATTACCCTTGGACA...TGTGGGATTTATCTTCTGCCTCTGTCTGCTTGCTGAGATTCTAGGCATAATTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CAA 90 bp GGTTTTGCAGAAAGAGAATATAAATGTGGAGCTGGGTCACAGAAATaGGTGGCCAATGTGAAAGTCCTGAAGCAATGGGTACTTAATGAG +
Preference number: 2 (lower is better)
Translates to: GFAEREYKCGAGSQK*VANVKVLKQWVLNE
Trigger: CTCATTAAGTACCCATTGCTTCAGGACTTTCACATTGGCCACCAATTTCTGTGACCCAGCTCCACATTTATATTCTCTTTCTGCAAAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR CAA 90 bp TCTAAGGAGTCTCTGTTCAGAAGAGCAGACATGATATGCTACCACTaGTATAAAAGTAGACACTCTGTGGGTAGATTCTCTGTGCATGGT +
Preference number: 2 (lower is better)
Translates to: SKESLFRRADMICYH*YKSRHSVGRFSVHG
Trigger: ACCATGCACAGAGAATCTACCCACAGAGTGTCTACTTTTATACAAGTGGTAGCATATCATGTCTGCTCTTCTGAACAGAGACTCCTTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
3UTR-3UTR CCA 90 bp CATACAGATAGGTTCTCTGAATTAACTGAGGAAGCAGGCTCAGGGAAAACAGTGACTACATACCTAGACTaGTTCAGAACATGTGATCCT +
Preference number: 2 (lower is better)
Translates to: HTDRFSELTEEAGSGKTVTTYLD*FRTCDP
Trigger: AGGATCACATGTTCTGAACCAGTCTAGGTATGTAGT...CACTGTTTTCCCTGAGCCTGCTTCCTCAGTTAATTCAGAGAACCTATCTGTATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR TCA 72 bp GGACCCGCCCCTTCACAGGCTCTGGCAGTTCACAGATaGTATGGATGCTGGGGTGGGCCACCTCAAAGCCCC +
Preference number: 3 (lower is better)
Translates to: GPAPSQALAVHR*YGCWGGPPQSP
Trigger: GGGGCTTTGAGGTGGCCCACCCCAGCATCCATATCATCTGTGAACTGCCAGAGCCTGTGAAGGGGCGGGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR GCA 72 bp CAAGGAGTAGGGCTCATTCTCCTTCACCGAAGCCACTaGACAGCTGGTGAGGGTCAGGCCAGCCCTCCTGTG +
Preference number: 3 (lower is better)
Translates to: QGVGLILLHRSH*TAGEGQASPPV
Trigger: CACAGGAGGGCTGGCCTGACCCTCACCAGCTGTGCAGTGGCTTCGGTGAAGGAGAATGAGCCCTACTCCTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR CCA 72 bp AACCAGGGCAAGCTCCCCCACTCACTGTTGTGTTCTTaGGGCTGGCTCTACTGTGCTGCCCAGGCAAGGTAC +
Preference number: 3 (lower is better)
Translates to: NQGKLPHSLLCS*GWLYCAAQARY
Trigger: GTACCTTGCCTGGGCAGCACAGTAGAGCCAGCCCCAAGAACACAACAGTGAGTGGGGGAGCTTGCCCTGGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR TCA 72 bp GTCGTGCACCCTTGCGGAGATCGGTGGACAGCTTTCTaGCGCTGGAGCACTCCTTCCTGGGGATTCAGTGTT +
Preference number: 3 (lower is better)
Translates to: VVHPCGDRWTAF*RWSTPSWGFSV
Trigger: AACACTGAATCCCCAGGAAGGAGTGCTCCAGCGTCAGAAAGCTGTCCACCGATCTCCGCAAGGGTGCACGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CCA 72 bp GCCGTAACCGCCAAGCTCTGCTCCAAGCCGCCACCCTaGATGATATACCAAGAACACCAACGGTCTGGGGTT +
Preference number: 3 (lower is better)
Translates to: AVTAKLCSKPPP*MIYQEHQRSGV
Trigger: AACCCCAGACCGTTGGTGTTCTTGGTATATCATCCAGGGTGGCGGCTTGGAGCAGAGCTTGGCGGTTACGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR TCA 72 bp CCCTCTGACGAGACAACCCTGAGGGTTGAACACTCCTaGTTCCCACTGTGCTCAGGTGTGAGCACAATGGCC +
Preference number: 3 (lower is better)
Translates to: PSDETTLRVEHS*FPLCSGVSTMA
Trigger: GGCCATTGTGCTCACACCTGAGCACAGTGGGAATCAGGAGTGTTCAACCCTCAGGGTTGTCTCGTCAGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR GCA 72 bp GCTGGCTCTACTGTGCTGCCCAGGCAAGGTACAGACTaGTCTCCCAAGCACTACAACCTTCAAGGAGTAGGG +
Preference number: 3 (lower is better)
Translates to: AGSTVLPRQGTD*SPKHYNLQGVG
Trigger: CCCTACTCCTTGAAGGTTGTAGTGCTTGGGAGAGCAGTCTGTACCTTGCCTGGGCAGCACAGTAGAGCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR GCA 72 bp CTCACTGTTGTGTTCTTGGGGCTGGCTCTACTGTGCTaGCCAGGCAAGGTACAGACTGCTCTCCCAAGCACT +
Preference number: 3 (lower is better)
Translates to: LTVVFLGLALLC*PGKVQTALPST
Trigger: AGTGCTTGGGAGAGCAGTCTGTACCTTGCCTGGGCAGCACAGTAGAGCCAGCCCCAAGAACACAACAGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR GCA 72 bp GACCCTCACGGGGACCCTTCTCAGATACCCTGTTGTTaGCCTGTGTCATGGAGATCCTGCAGCCTTAGTTCT +
Preference number: 3 (lower is better)
Translates to: DPHGDPSQIPCC*PVSWRSCSLSS
Trigger: AGAACTAAGGCTGCAGGATCTCCATGACACAGGGCAACAACAGGGTATCTGAGAAGGGTCCCCGTGAGGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR-3UTR CAA 90 bp TTGGCTCCTTCCCTTGACTTACGCTCTCTTCTCTATCACCACCTGCCAAGTCCCCCTCAAAGCCCCAAGTaGGTCATCCCTCCTGTTCCT +
Preference number: 3 (lower is better)
Translates to: LAPSLDLRSLLYHHLPSPPQSPK*VIPPVP
Trigger: AGGAACAGGAGGGATGACCAACTTGGGGCTTTGAGG...GGGACTTGGCAGGTGGTGATAGAGAAGAGAGCGTAAGTCAAGGGAAGGAGCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR TCA 72 bp AAAGCTCACTGTGCAGCTCCCGTTGGCTCCTTCCCTTaGCTTACGCTCTCTTCTCTATCACCACCTGCCAAG +
Preference number: 3 (lower is better)
Translates to: KAHCAAPVGSFP*LTLSSLSPPAK
Trigger: CTTGGCAGGTGGTGATAGAGAAGAGAGCGTAAGTCAAGGGAAGGAGCCAACGGGAGCTGCACAGTGAGCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CCA 72 bp TGGCAATCCTCCTGCCTCTGTAGGAACTGCCATGCCTaGCTGATTCTGTCTCTTGTTCACCACTCAGCTACC +
Preference number: 3 (lower is better)
Translates to: WQSSCLCRNCHA*LILSLVHHSAT
Trigger: GGTAGCTGAGTGGTGAACAAGAGACAGAATCAGCCAGGCATGGCAGTTCCTACAGAGGCAGGAGGATTGCCA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CCA 72 bp TGGAGCACTCCTTCCTGGGGATTCAGTGTTCAGACCTaGCAGGAAACACCTTTACCACTGAGCGAGCCATCT +
Preference number: 3 (lower is better)
Translates to: WSTPSWGFSVQT*QETPLPLSEPS
Trigger: AGATGGCTCGCTCAGTGGTAAAGGTGTTTCCTGCCAGGTCTGAACACTGAATCCCCAGGAAGGAGTGCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CCA 72 bp AACTTCGTCTCCCTTTCTCAGTGTTGGGACTCTGTCTaGTTTGAACCTGTGCTGTCAGCCACATGTGCACGG +
Preference number: 3 (lower is better)
Translates to: NFVSLSQCWDSV*FEPVLSATCAR
Trigger: CCGTGCACATGTGGCTGACAGCACAGGTTCAAACCAGACAGAGTCCCAACACTGAGAAAGGGAGACGAAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR GCA 72 bp ATGAGCCCGAGGAGGCTGAAGCAAGAGGAGGCTCATTaGAAGTTCAAGGCCAGCCTAGGTTACATAATGGAT +
Preference number: 3 (lower is better)
Translates to: MSPRRLKQEEAH*KFKASLGYIMD
Trigger: ATCCATTATGTAACCTAGGCTGGCCTTGAACTTGCAATGAGCCTCCTCTTGCTTCAGCCTCCTCGGGCTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
3UTR GCA 72 bp GAGAAAGCTGACTTCCCTTTCTCAGCAGCTATCTACTaGACAACCTCCCCTTCGTGGGGATCTCTGCAAACA +
Preference number: 3 (lower is better)
Translates to: EKADFPFSAAIY*TTSPSWGSLQT
Trigger: TGTTTGCAGAGATCCCCACGAAGGGGAGGTTGTGCAGTAGATAGCTGCTGAGAAAGGGAAGTCAGCTTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR GCA 72 bp TCAAACTTGTGGCAATCCTCCTGCCTCTGTAGGAACTaGCATGCCTGGCTGATTCTGTCTCTTGTTCACCAC +
Preference number: 3 (lower is better)
Translates to: SNLWQSSCLCRN*HAWLILSLVHH
Trigger: GTGGTGAACAAGAGACAGAATCAGCCAGGCATGGCAGTTCCTACAGAGGCAGGAGGATTGCCACAAGTTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR-3UTR CAA 90 bp ACAAGCACACAGAGTCCATTTTATGTTAGCCAATTACTCCTGGGTCTGGGGCCTCAGCTACGAATCACATaGTTCCTGCCTTCTGGGCAG +
Preference number: 3 (lower is better)
Translates to: TSTQSPFYVSQLLLGLGPQLRIT*FLPSGQ
Trigger: CTGCCCAGAAGGCAGGAACAATGTGATTCGTAGCTG...AGGCCCCAGACCCAGGAGTAATTGGCTAACATAAAATGGACTCTGTGTGCTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CCA 72 bp AGACCACCAGCTACGAATCACATTGTTCCTGCCTTCTaGGCAGAAACAGGTTATACATCTCTCCCTCTGACG +
Preference number: 3 (lower is better)
Translates to: RPPATNHIVPAF*AETGYTSLPLT
Trigger: CGTCAGAGGGAGAGATGTATAACCTGTTTCTGCCCAGAAGGCAGGAACAATGTGATTCGTAGCTGGTGGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CCA 72 bp GGCAGTTTGTTAATTCTGCTCCCTTTTCACCAGGGATaGAGCATGACACAGTCTGGCCTCAAACTTGTGGCA +
Preference number: 3 (lower is better)
Translates to: GSLLILLPFHQG*SMTQSGLKLVA
Trigger: TGCCACAAGTTTGAGGCCAGACTGTGTCATGCTCCATCCCTGGTGAAAAGGGAGCAGAATTAACAAACTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR-3UTR CAA 90 bp TATATCATGCACCCAACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTGCGCTGGGTCACAGAAATaGGTGGCCAATGTGAAAGTC +
Preference number: 3 (lower is better)
Translates to: YIMHPTPLMSPASLSTLCAGSQK*VANVKV
Trigger: GACTTTCACATTGGCCACCAATTTCTGTGACCCAGC...GCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGTTGGGTGCATGATATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR-3UTR CAA 90 bp GCAATTATGCCTAGAATCTCAGCAAGCAGACAGAGGCAGAAGATAAATCCCACAACTGTGCAGCTCCCGTaGGCTCCTTCCCTTGACTTA +
Preference number: 3 (lower is better)
Translates to: AIMPRISASRQRQKINPTTVQLP*APSLDL
Trigger: TAAGTCAAGGGAAGGAGCCAACGGGAGCTGCACAGT...TGTGGGATTTATCTTCTGCCTCTGTCTGCTTGCTGAGATTCTAGGCATAATTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR GCA 72 bp GATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTCTGGACCTTTGGAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: DLVTDGCEPPCG*WDLNSGPLEEQ
Trigger: CTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CCA 72 bp CAGCTGGTGAGGGTCAGGCCAGCCCTCCTGTGCTCATaGGTAACTATTTTTCTATCTAGATGTCTTACAAAG +
Preference number: 3 (lower is better)
Translates to: QLVRVRPALLCS*VTIFLSRCLTK
Trigger: CTTTGTAAGACATCTAGATAGAAAAATAGTTACCCATGAGCACAGGAGGGCTGGCCTGACCCTCACCAGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR-3UTR CAA 90 bp ATTTCCGTGTGCCCACACATCTTCACTCATTCACTTACATCTTTACTCAGTGCACTCACTGTTGTGTTCTaGGGGCTGGCTCTACTGTGC +
Preference number: 3 (lower is better)
Translates to: ISVCPHIFTHSLTSLLSALTVVF*GLALLC
Trigger: GCACAGTAGAGCCAGCCCCAAGAACACAACAGTGAG...TGCACTGAGTAAAGATGTAAGTGAATGAGTGAAGATGTGTGGGCACACGGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR-3UTR CAA 90 bp AGCTTCCTTATCTACTCTCTGCCCTTGCAATCTGTTCCTGCCAAAGAAACAAAACCTCAAAGCCCCAAGTaGGTCATCCCTCCTGTTCCT +
Preference number: 3 (lower is better)
Translates to: SFLIYSLPLQSVPAKETKPQSPK*VIPPVP
Trigger: AGGAACAGGAGGGATGACCAACTTGGGGCTTTGAGG...TTTTGTTTCTTTGGCAGGAACAGATTGCAAGGGCAGAGAGTAGATAAGGAAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR GCA 72 bp CTTCCCTTGACTTACGCTCTCTTCTCTATCACCACCTaGCAAGTCCCATCAGCTTTTCAAAGTTTGACTCAG +
Preference number: 3 (lower is better)
Translates to: LPLTYALFSITT*QVPSAFQSLTQ
Trigger: CTGAGTCAAACTTTGAAAAGCTGATGGGACTTGGCAGGTGGTGATAGAGAAGAGAGCGTAAGTCAAGGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR GCA 72 bp ACACATCTTCACTCATTCACTTACATCTTTACTCAGTaGAATGGGTCATTGTCTGATCCGAGGCCTCTGGCT +
Preference number: 3 (lower is better)
Translates to: THLHSFTYIFTQ*NGSLSDPRPLA
Trigger: AGCCAGAGGCCTCGGATCAGACAATGACCCATTGCACTGAGTAAAGATGTAAGTGAATGAGTGAAGATGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR GCA 72 bp ACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTaGCCTTGCAATCTGTTCCTGCCAAAGAAACAAAAA +
Preference number: 3 (lower is better)
Translates to: TPLMSPASLSTL*PCNLFLPKKQK
Trigger: TTTTTGTTTCTTTGGCAGGAACAGATTGCAAGGGCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR TCA 72 bp GATCCAAGAGAAGCAAGAAGAAAGTCTGTCTCAACGTaGCTCAGTGGACAGTTTTTGTCCAAACTTCTGGAG +
Preference number: 3 (lower is better)
Translates to: DPREARRKSVST*LSGQFLSKLLE
Trigger: CTCCAGAAGTTTGGACAAAAACTGTCCACTGAGTCACGTTGAGACAGACTTTCTTCTTGCTTCTCTTGGATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CCA 72 bp GCCAGCCTAGGTTACATAATGGATTCCAGGCCAGGCTaGATTACAGGTAAGTTCTTGTCTCAAAAGAAGATA +
Preference number: 3 (lower is better)
Translates to: ASLGYIMDSRPG*ITGKFLSQKKI
Trigger: TATCTTCTTTTGAGACAAGAACTTACCTGTAATCCAGCCTGGCCTGGAATCCATTATGTAACCTAGGCTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
3UTR CCA 72 bp AAATCCCGTTATTTCCCTTCATGTCCAAGGGTAATCTaGGGCAGTTTGTTAATTCTGCTCCCTTTTCACCAG +
Preference number: 3 (lower is better)
Translates to: KSRYFPSCPRVI*GSLLILLPFHQ
Trigger: CTGGTGAAAAGGGAGCAGAATTAACAAACTGCCCCAGATTACCCTTGGACATGAAGGGAAATAACGGGATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR TCA 72 bp ATAAATACAGAGCAAACTGGAAATGGTATAAGCCTTTaGAACCTCAAAGCCTGTCCCTGTCCCCCAGTAACA +
Preference number: 3 (lower is better)
Translates to: INTEQTGNGISL*NLKACPCPPVT
Trigger: TGTTACTGGGGGACAGGGACAGGCTTTGAGGTTTCAAAGGCTTATACCATTTCCAGTTTGCTCTGTATTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR TCA 72 bp TTAAGTTCACAAATAGGCCCTGCAAACACAACCCACTaGCCTCTGAAAAGCATCAAAGCAATTCACTGGAAA +
Preference number: 3 (lower is better)
Translates to: LSSQIGPANTTH*PLKSIKAIHWK
Trigger: TTTCCAGTGAATTGCTTTGATGCTTTTCAGAGGTCAGTGGGTTGTGTTTGCAGGGCCTATTTGTGAACTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR GCA 72 bp CATAAAAGCTTGTGTGTGTCCCTCAGTATTTCCGTGTaGCCACACATCTTCACTCATTCACTTACATCTTTA +
Preference number: 3 (lower is better)
Translates to: HKSLCVSLSISV*PHIFTHSLTSL
Trigger: TAAAGATGTAAGTGAATGAGTGAAGATGTGTGGGCACACGGAAATACTGAGGGACACACACAAGCTTTTATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR GCA 72 bp TCTAAGGAGTCTCTGTTCAGAAGAGCAGACATGATATaGTACCACTTGTATAAAAGTAGACACTCTGTGGGT +
Preference number: 3 (lower is better)
Translates to: SKESLFRRADMI*YHLYKSRHSVG
Trigger: ACCCACAGAGTGTCTACTTTTATACAAGTGGTAGCATATCATGTCTGCTCTTCTGAACAGAGACTCCTTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
3UTR TCA 72 bp CCTGTGTGTACAGAAAAGCTTAGGAGATGGCTATACTaGAACTCTTGTAGAGTACAAGCAACATCTTGCATA +
Preference number: 3 (lower is better)
Translates to: PVCTEKLRRWLY*NSCRVQATSCI
Trigger: TATGCAAGATGTTGCTTGTACTCTACAAGAGTTTCAGTATAGCCATCTCCTAAGCTTTTCTGTACACACAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR TCA 72 bp CAATATCTAAGGAGTCTCTGTTCAGAAGAGCAGACATaGTATGCTACCACTTGTATAAAAGTAGACACTCTG +
Preference number: 3 (lower is better)
Translates to: QYLRSLCSEEQT*YATTCIKVDTL
Trigger: CAGAGTGTCTACTTTTATACAAGTGGTAGCATATCATGTCTGCTCTTCTGAACAGAGACTCCTTAGATATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
3UTR TCA 72 bp AGATGTGCAATATGCAAACTATTACAGTGTCTAAAATaGCCCTCATCCTGGCAATGTTTTCTCTGTGTGTGT +
Preference number: 3 (lower is better)
Translates to: RCAICKLLQCLK*PSSWQCFLCVC
Trigger: ACACACACAGAGAAAACATTGCCAGGATGAGGGTCATTTTAGACACTGTAATAGTTTGCATATTGCACATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR GCA 72 bp AATCAACAGAATACAATTAAGTTCACAAATAGGCCCTaGAAACACAACCCACTGACCTCTGAAAAGCATCAA +
Preference number: 3 (lower is better)
Translates to: NQQNTIKFTNRP*KHNPLTSEKHQ
Trigger: TTGATGCTTTTCAGAGGTCAGTGGGTTGTGTTTGCAGGGCCTATTTGTGAACTTAATTGTATTCTGTTGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CCA 72 bp AATAGTATATTCAATAAATACAGAGCAAACTGGAAATaGTATAAGCCTTTGAAACCTCAAAGCCTGTCCCTG +
Preference number: 3 (lower is better)
Translates to: NSIFNKYRANWK*YKPLKPQSLSL
Trigger: CAGGGACAGGCTTTGAGGTTTCAAAGGCTTATACCATTTCCAGTTTGCTCTGTATTTATTGAATATACTATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp TGGTCATCCCTCCTGTTCCTGATCCTGAGCCAACCAGGGCAAGCTCCCCCACTCGCTTTGGCTTCCCTCTaGGAGAAGGGCACGTGTCCC +
Preference number: 4 (lower is better)
Translates to: WSSLLFLILSQPGQAPPLALASL*EKGTCP
Trigger: GGGACACGTGCCCTTCTCTCAGAGGGAAGCCAAAGC...GAGTGGGGGAGCTTGCCCTGGTTGGCTCAGGATCAGGAACAGGAGGGATGACCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR GCA 90 bp AGCCATGAGCCCGAGGAGGCTGAAGCAAGAGGAGGCTCATTGCAAGTTCAAGGCCCAGGTGAGGGTTTCTaGGCAGGTGGTCCTCCACGG +
Preference number: 4 (lower is better)
Translates to: SHEPEEAEARGGSLQVQGPGEGF*AGGPPR
Trigger: CCGTGGAGGACCACCTGCGCAGAAACCCTCACCTGG...GCCTTGAACTTGCAATGAGCCTCCTCTTGCTTCAGCCTCCTCGGGCTCATGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
3UTR CAA 72 bp CAACCAGGGCAAGCTCCCCCACTCACTGTTGTGTTCTaGGGGCTGGCTCTACTGTGCTGCCCAGGCAAGGTA +
Preference number: 4 (lower is better)
Translates to: QPGQAPPLTVVF*GLALLCCPGKV
Trigger: TACCTTGCCTGGGCAGCACAGTAGAGCCAGCCCCAAGAACACAACAGTGAGTGGGGGAGCTTGCCCTGGTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR GCA 90 bp GCACCCAACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTGCCCTTGCAACCAGGTGAGGGTTTCTaGGCAGGTGGTCCTCCACGG +
Preference number: 4 (lower is better)
Translates to: APNPTHVSSFLIYSLPLQPGEGF*AGGPPR
Trigger: CCGTGGAGGACCACCTGCGCAGAAACCCTCACCTGG...TTGCAAGGGCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGTTGGGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR GCA 90 bp CAGCTGGTGAGGGTCAGGCCAGCCCTCCTGTGCTCATGGGTAACTATTTTTCTAGGGCGTCTCCTGCCTTaGTTCAGCTGCTGGGAGAGC +
Preference number: 4 (lower is better)
Translates to: QLVRVRPALLCSWVTIFLGRLLP*FSCWES
Trigger: GCTCTCCCAGCAGCTGAAGCAAGGCAGGAGACGCCC...TAGAAAAATAGTTACCCATGAGCACAGGAGGGCTGGCCTGACCCTCACCAGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR CAA 72 bp GCAGGGAGGGCAGACTGCCGATTGACTGACATGAACTaGAGTCTGAGGGAGGCGGTGTGGCTTGGTGGTACA +
Preference number: 4 (lower is better)
Translates to: AGRADCRLTDMN*SLREAVWLGGT
Trigger: TGTACCACCAAGCCACACCGCCTCCCTCAGACTCAAGTTCATGTCAGTCAATCGGCAGTCTGCCCTCCCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR GCA 90 bp ACGGGTCCTGTTCTGTCTGGAAGATGCGGCTTCCCTGGAGCCCTTCACCACCTCAGTGAACTTGATCTCTaGCCATCATGCTTTGGGAGC +
Preference number: 4 (lower is better)
Translates to: TGPVLSGRCGFPGALHHLSELDL*PSCFGS
Trigger: GCTCCCAAAGCATGATGGGCAGAGATCAAGTTCACT...GAGGTGGTGAAGGGCTCCAGGGAAGCCGCATCTTCCAGACAGAACAGGACCCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR GCA 90 bp TGTTCTTGGGGCTGGCTCTACTGTGCTGCCCAGGCAAGGTACAGACTGCTCTCCCATCTACCTCCAGGCTaGTATCTTCCAACTGGCTAC +
Preference number: 4 (lower is better)
Translates to: CSWGWLYCAAQARYRLLSHLPPG*YLPTGY
Trigger: GTAGCCAGTTGGAAGATAGCAGCCTGGAGGTAGATG...GGAGAGCAGTCTGTACCTTGCCTGGGCAGCACAGTAGAGCCAGCCCCAAGAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp GCACCCAACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTGCCCTTGCAAGGGTTTCTGCGCAGGTaGTCCTCCACGGTTGCTTTG +
Preference number: 4 (lower is better)
Translates to: APNPTHVSSFLIYSLPLQGFLRR*SSTVAL
Trigger: CAAAGCAACCGTGGAGGACCACCTGCGCAGAAACCC...TTGCAAGGGCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGTTGGGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp TGTTCTTGGGGCTGGCTCTACTGTGCTGCCCAGGCAAGGTACAGACTGCTCTCCATCTTGCTCCTTGGCTaGACTGGGTGTACTTCTGGA +
Preference number: 4 (lower is better)
Translates to: CSWGWLYCAAQARYRLLSILLLG*TGCTSG
Trigger: TCCAGAAGTACACCCAGTCCAGCCAAGGAGCAAGAT...GGAGAGCAGTCTGTACCTTGCCTGGGCAGCACAGTAGAGCCAGCCCCAAGAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp ACGGGTCCTGTTCTGTCTGGAAGATGCGGCTTCCCTGGAGCCCTTCACCACCTCCTCCTGATTCCTGGATaGATGTCTTCACCAGTGTTC +
Preference number: 4 (lower is better)
Translates to: TGPVLSGRCGFPGALHHLLLIPG*MSSPVF
Trigger: GAACACTGGTGAAGACATCCATCCAGGAATCAGGAG...GAGGTGGTGAAGGGCTCCAGGGAAGCCGCATCTTCCAGACAGAACAGGACCCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CAA 72 bp TCGTCTCCCTTTCTCAGTGTTGGGACTCTGTCTGGTTaGAACCTGTGCTGTCAGCCACATGTGCACGGGTCC +
Preference number: 4 (lower is better)
Translates to: SSPFLSVGTLSG*NLCCQPHVHGS
Trigger: GGACCCGTGCACATGTGGCTGACAGCACAGGTTCAAACCAGACAGAGTCCCAACACTGAGAAAGGGAGACGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR GCA 90 bp TCCTGCAGCCTTAGTTCTACAGGACCCGCCCCTTCACAGGCTCTGGCAGTTCACAGATTCCTAGGGGCTTaGTCTGCATCCTGTAAGTCT +
Preference number: 4 (lower is better)
Translates to: SCSLSSTGPAPSQALAVHRFLGA*SASCKS
Trigger: AGACTTACAGGATGCAGAGCAAGCCCCTAGGAATCT...GTGAACTGCCAGAGCCTGTGAAGGGGCGGGTCCTGTAGAACTAAGGCTGCAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR GCA 90 bp CAGCTGGTGAGGGTCAGGCCAGCCCTCCTGTGCTCATGGGTAACTATTTTTCTACTTCTGGGTGAGTTGTaGAGTGTCTGGGTTGCAGGG +
Preference number: 4 (lower is better)
Translates to: QLVRVRPALLCSWVTIFLLLGEL*SVWVAG
Trigger: CCCTGCAACCCAGACACTGCACAACTCACCCAGAAG...TAGAAAAATAGTTACCCATGAGCACAGGAGGGCTGGCCTGACCCTCACCAGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp TCTTGGGGCTGGCTCTACTGTGCTGCCCAGGCAAGGTACAGACTGCTCTCCCAAAGAAACTCTTGTCCTTaGCTATCTTGCCTCTGCCTG +
Preference number: 4 (lower is better)
Translates to: SWGWLYCAAQARYRLLSQRNSCP*LSCLCL
Trigger: CAGGCAGAGGCAAGATAGCCAAGGACAAGAGTTTCT...TTGGGAGAGCAGTCTGTACCTTGCCTGGGCAGCACAGTAGAGCCAGCCCCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp GCAGCCTTAGTTCTACAGGACCCGCCCCTTCACAGGCTCTGGCAGTTCACAGATTCTTCAAGATCCTCTTaGGAAGGTCAAACCGCCTCA +
Preference number: 4 (lower is better)
Translates to: AALVLQDPPLHRLWQFTDSSRSS*EGQTAS
Trigger: TGAGGCGGTTTGACCTTCTCAAGAGGATCTTGAAGA...ATCTGTGAACTGCCAGAGCCTGTGAAGGGGCGGGTCCTGTAGAACTAAGGCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp AGCCATGAGCCCGAGGAGGCTGAAGCAAGAGGAGGCTCATTGCAAGTTCAAGGCTCTTCAAGATCCTCTTaGGAAGGTCAAACCGCCTCA +
Preference number: 4 (lower is better)
Translates to: SHEPEEAEARGGSLQVQGSSRSS*EGQTAS
Trigger: TGAGGCGGTTTGACCTTCTCAAGAGGATCTTGAAGA...GCCTTGAACTTGCAATGAGCCTCCTCTTGCTTCAGCCTCCTCGGGCTCATGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS-3UTR TCA 90 bp TGGTCATCCCTCCTGTTCCTGATCCTGAGCCAACCAGGGCAAGCTCCCCCACTCCCCATTCTGGAGCCTTaGGTTATACTTGATACTCAA +
Preference number: 4 (lower is better)
Translates to: WSSLLFLILSQPGQAPPLPILEP*VILDTQ
Trigger: TTGAGTATCAAGTATAACTCAAGGCTCCAGAATGGG...GAGTGGGGGAGCTTGCCCTGGTTGGCTCAGGATCAGGAACAGGAGGGATGACCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp ACAAGCACACAGAGTCCATTTTATGTTAGCCAATTACTCCTGGGTCTGGGGCCTGCTTTGGCTTCCCTCTaGGAGAAGGGCACGTGTCCC +
Preference number: 4 (lower is better)
Translates to: TSTQSPFYVSQLLLGLGPALASL*EKGTCP
Trigger: GGGACACGTGCCCTTCTCTCAGAGGGAAGCCAAAGC...AGGCCCCAGACCCAGGAGTAATTGGCTAACATAAAATGGACTCTGTGTGCTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR GCA 90 bp AAAGCTTGTGTGTGTCCCTCAGTATTTCCGTGTGCCCACACATCTTCACTCATTGGGCGTCTCCTGCCTTaGTTCAGCTGCTGGGAGAGC +
Preference number: 4 (lower is better)
Translates to: KACVCPSVFPCAHTSSLIGRLLP*FSCWES
Trigger: GCTCTCCCAGCAGCTGAAGCAAGGCAGGAGACGCCC...AATGAGTGAAGATGTGTGGGCACACGGAAATACTGAGGGACACACACAAGCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR GCA 90 bp AAAGCTTGTGTGTGTCCCTCAGTATTTCCGTGTGCCCACACATCTTCACTCATTCGAGTGGGCGTCTCCTaGCTTGCTTCAGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: KACVCPSVFPCAHTSSLIRVGVS*LASAAG
Trigger: CCCAGCAGCTGAAGCAAGGCAGGAGACGCCCACTCG...AATGAGTGAAGATGTGTGGGCACACGGAAATACTGAGGGACACACACAAGCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp TCATTGCAAGTTCAAGGCCAGCCTAGGTTACATAATGGATTCCAGGCCAGGCTGGGGTTTCTGCGCAGGTaGTCCTCCACGGTTGCTTTG +
Preference number: 4 (lower is better)
Translates to: SLQVQGQPRLHNGFQARLGFLRR*SSTVAL
Trigger: CAAAGCAACCGTGGAGGACCACCTGCGCAGAAACCC...CAGCCTGGCCTGGAATCCATTATGTAACCTAGGCTGGCCTTGAACTTGCAATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS-3UTR CCA 90 bp TGGTCATCCCTCCTGTTCCTGATCCTGAGCCAACCAGGGCAAGCTCCCCCACTCTTACTTCGCCCATTCTaGAGCCTTGAGTTATACTTG +
Preference number: 4 (lower is better)
Translates to: WSSLLFLILSQPGQAPPLLLRPF*SLELYL
Trigger: CAAGTATAACTCAAGGCTCCAGAATGGGCGAAGTAA...GAGTGGGGGAGCTTGCCCTGGTTGGCTCAGGATCAGGAACAGGAGGGATGACCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp TGCCCTGTGTCATGGAGATCCTGCAGCCTTAGTTCTACAGGACCCGCCCCTTCACTCCTGATTCCTGGATaGATGTCTTCACCAGTGTTC +
Preference number: 4 (lower is better)
Translates to: CPVSWRSCSLSSTGPAPSLLIPG*MSSPVF
Trigger: GAACACTGGTGAAGACATCCATCCAGGAATCAGGAG...TGAAGGGGCGGGTCCTGTAGAACTAAGGCTGCAGGATCTCCATGACACAGGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp CAGCTGGTGAGGGTCAGGCCAGCCCTCCTGTGCTCATGGGTAACTATTTTTCTAACACAGAGGATGAGCTaGAGGGCTTCTCCAAGTGAG +
Preference number: 4 (lower is better)
Translates to: QLVRVRPALLCSWVTIFLTQRMS*RASPSE
Trigger: CTCACTTGGAGAAGCCCTCCAGCTCATCCTCTGTGT...TAGAAAAATAGTTACCCATGAGCACAGGAGGGCTGGCCTGACCCTCACCAGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR CAA 72 bp CATGAGCCCGAGGAGGCTGAAGCAAGAGGAGGCTCATaGCAAGTTCAAGGCCAGCCTAGGTTACATAATGGA +
Preference number: 4 (lower is better)
Translates to: HEPEEAEARGGS*QVQGQPRLHNG
Trigger: TCCATTATGTAACCTAGGCTGGCCTTGAACTTGCAATGAGCCTCCTCTTGCTTCAGCCTCCTCGGGCTCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS-3UTR TCA 90 bp AGCCATGAGCCCGAGGAGGCTGAAGCAAGAGGAGGCTCATTGCAAGTTCAAGGCGAGGATACATCGTTCTaGTCTAAGCTCTCACCAATC +
Preference number: 4 (lower is better)
Translates to: SHEPEEAEARGGSLQVQGEDTSF*SKLSPI
Trigger: GATTGGTGAGAGCTTAGATCAGAACGATGTATCCTC...GCCTTGAACTTGCAATGAGCCTCCTCTTGCTTCAGCCTCCTCGGGCTCATGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS-3UTR CCA 90 bp TGTTCTTGGGGCTGGCTCTACTGTGCTGCCCAGGCAAGGTACAGACTGCTCTCCTTACTTCGCCCATTCTaGAGCCTTGAGTTATACTTG +
Preference number: 4 (lower is better)
Translates to: CSWGWLYCAAQARYRLLSLLRPF*SLELYL
Trigger: CAAGTATAACTCAAGGCTCCAGAATGGGCGAAGTAA...GGAGAGCAGTCTGTACCTTGCCTGGGCAGCACAGTAGAGCCAGCCCCAAGAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp TTACGGCTCATGCCTGTGCACAGGAGAACCCTAGGCCAGGACTCACGGCAGAGCGTATTCCACAAATCTTaGCTCTTTACTTCGCCCATT +
Preference number: 4 (lower is better)
Translates to: LRLMPVHRRTLGQDSRQSVFHKS*LFTSPI
Trigger: AATGGGCGAAGTAAAGAGCCAAGATTTGTGGAATAC...GCTCTGCCGTGAGTCCTGGCCTAGGGTTCTCCTGTGCACAGGCATGAGCCGTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR GCA 90 bp CAGTATTTCCGTGTGCCCACACATCTTCACTCATTCACTTACATCTTTACTCAGCCAGGTGAGGGTTTCTaGGCAGGTGGTCCTCCACGG +
Preference number: 4 (lower is better)
Translates to: QYFRVPTHLHSFTYIFTQPGEGF*AGGPPR
Trigger: CCGTGGAGGACCACCTGCGCAGAAACCCTCACCTGG...CTGAGTAAAGATGTAAGTGAATGAGTGAAGATGTGTGGGCACACGGAAATACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR GCA 90 bp GCTTCCTTATCTACTCTCTGCCCTTGCAATCTGTTCCTGCCAAAGAAACAAAAACGAGTGGGCGTCTCCTaGCTTGCTTCAGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: ASLSTLCPCNLFLPKKQKRVGVS*LASAAG
Trigger: CCCAGCAGCTGAAGCAAGGCAGGAGACGCCCACTCG...TTTTTGTTTCTTTGGCAGGAACAGATTGCAAGGGCAGAGAGTAGATAAGGAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR CAA 72 bp CTGGCAGGAAACACCTTTACCACTGAGCGAGCCATCTaGCTGCCCCTAAATCCCGTTATTTCCCTTCATGTC +
Preference number: 4 (lower is better)
Translates to: LAGNTFTTERAI*LPLNPVISLHV
Trigger: GACATGAAGGGAAATAACGGGATTTAGGGGCAGCAAGATGGCTCGCTCAGTGGTAAAGGTGTTTCCTGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp TGCCCTGTGTCATGGAGATCCTGCAGCCTTAGTTCTACAGGACCCGCCCCTTCAGAAGTGAAGGTCTCTTaGAGATATTTTGTGTCGTTG +
Preference number: 4 (lower is better)
Translates to: CPVSWRSCSLSSTGPAPSEVKVS*RYFVSL
Trigger: CAACGACACAAAATATCTTCAAGAGACCTTCACTTC...TGAAGGGGCGGGTCCTGTAGAACTAAGGCTGCAGGATCTCCATGACACAGGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp TTGGCTCCTTCCCTTGACTTACGCTCTCTTCTCTATCACCACCTGCCAAGTCCCAACATGTTCTTGACATaGTCCAAGGAGAACCCTGAG +
Preference number: 4 (lower is better)
Translates to: LAPSLDLRSLLYHHLPSPNMFLT*SKENPE
Trigger: CTCAGGGTTCTCCTTGGATCATGTCAAGAACATGTT...GGGACTTGGCAGGTGGTGATAGAGAAGAGAGCGTAAGTCAAGGGAAGGAGCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp CAGCTGGTGAGGGTCAGGCCAGCCCTCCTGTGCTCATGGGTAACTATTTTTCTATGCCAATACAATCAATaGTCAAGCAGATTCCTAGGG +
Preference number: 4 (lower is better)
Translates to: QLVRVRPALLCSWVTIFLCQYNQ*SSRFLG
Trigger: CCCTAGGAATCTGCTTGATCATTGATTGTATTGGCA...TAGAAAAATAGTTACCCATGAGCACAGGAGGGCTGGCCTGACCCTCACCAGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp ATTTCCGTGTGCCCACACATCTTCACTCATTCACTTACATCTTTACTCAGTGCAGGGTTTCTGCGCAGGTaGTCCTCCACGGTTGCTTTG +
Preference number: 4 (lower is better)
Translates to: ISVCPHIFTHSLTSLLSAGFLRR*SSTVAL
Trigger: CAAAGCAACCGTGGAGGACCACCTGCGCAGAAACCC...TGCACTGAGTAAAGATGTAAGTGAATGAGTGAAGATGTGTGGGCACACGGAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp TTGGCTCCTTCCCTTGACTTACGCTCTCTTCTCTATCACCACCTGCCAAGTCCCGACTGGGTGTACTTCTaGATCTTTGTGTTCAAGTCT +
Preference number: 4 (lower is better)
Translates to: LAPSLDLRSLLYHHLPSPDWVYF*IFVFKS
Trigger: AGACTTGAACACAAAGATCCAGAAGTACACCCAGTC...GGGACTTGGCAGGTGGTGATAGAGAAGAGAGCGTAAGTCAAGGGAAGGAGCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp GCACCCAACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTGCCCTTGCAAAAAGATATCAGCTTCTaGGTGAGTTGTGCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: APNPTHVSSFLIYSLPLQKDISF*VSCAVS
Trigger: AGACACTGCACAACTCACCCAGAAGCTGATATCTTT...TTGCAAGGGCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGTTGGGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp CAGCTGGTGAGGGTCAGGCCAGCCCTCCTGTGCTCATGGGTAACTATTTTTCTAGAAGTGAAGGTCTCTTaGAGATATTTTGTGTCGTTG +
Preference number: 4 (lower is better)
Translates to: QLVRVRPALLCSWVTIFLEVKVS*RYFVSL
Trigger: CAACGACACAAAATATCTTCAAGAGACCTTCACTTC...TAGAAAAATAGTTACCCATGAGCACAGGAGGGCTGGCCTGACCCTCACCAGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp ACCCAACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTGCCCTTGCAATCTATCGGCGAACAATCTaGGTTATGTCATGTGACTTG +
Preference number: 4 (lower is better)
Translates to: TQPHSCLQLPYLLSALAIYRRTI*VMSCDL
Trigger: CAAGTCACATGACATAACCCAGATTGTTCGCCGATA...GATTGCAAGGGCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGTTGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp ACCCAACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTGCCCTTGCAATCAAAGATATCAGCTTCTaGGTGAGTTGTGCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: TQPHSCLQLPYLLSALAIKDISF*VSCAVS
Trigger: AGACACTGCACAACTCACCCAGAAGCTGATATCTTT...GATTGCAAGGGCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGTTGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp TCATTGCAAGTTCAAGGCCAGCCTAGGTTACATAATGGATTCCAGGCCAGGCTGGAGAGTATTCATATTTaGTCTTGCTCCTTGGCTGGA +
Preference number: 4 (lower is better)
Translates to: SLQVQGQPRLHNGFQARLESIHI*SCSLAG
Trigger: TCCAGCCAAGGAGCAAGATCAAATATGAATACTCTC...CAGCCTGGCCTGGAATCCATTATGTAACCTAGGCTGGCCTTGAACTTGCAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS-3UTR TCA 90 bp TATATCATGCACCCAACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTGCAACATGTTCTTGACATaGTCCAAGGAGAACCCTGAG +
Preference number: 4 (lower is better)
Translates to: YIMHPTPLMSPASLSTLCNMFLT*SKENPE
Trigger: CTCAGGGTTCTCCTTGGATCATGTCAAGAACATGTT...GCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGTTGGGTGCATGATATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR GCA 90 bp TATGTCTTACTGTTCTCCACACTCTGGCAAAACATCCGACTAAGGAATGTAAGTCTTCTGGGTGAGTTGTaGAGTGTCTGGGTTGCAGGG +
Preference number: 4 (lower is better)
Translates to: YVLLFSTLWQNIRLRNVSLLGEL*SVWVAG
Trigger: CCCTGCAACCCAGACACTGCACAACTCACCCAGAAG...ACTTACATTCCTTAGTCGGATGTTTTGCCAGAGTGTGGAGAACAGTAAGACATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR GCA 90 bp CATACAGATAGGTTCTCTGAATTAACTGAGGAAGCAGGCTCAGGGAAAACAGTGTGCTGGGAGAGCTTCTaGAGATACACAGAGGATGAG +
Preference number: 4 (lower is better)
Translates to: HTDRFSELTEEAGSGKTVCWESF*RYTEDE
Trigger: CTCATCCTCTGTGTATCTGCAGAAGCTCTCCCAGCA...CACTGTTTTCCCTGAGCCTGCTTCCTCAGTTAATTCAGAGAACCTATCTGTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp TCATTGCAAGTTCAAGGCCAGCCTAGGTTACATAATGGATTCCAGGCCAGGCTGGACTGGGTGTACTTCTaGATCTTTGTGTTCAAGTCT +
Preference number: 4 (lower is better)
Translates to: SLQVQGQPRLHNGFQARLDWVYF*IFVFKS
Trigger: AGACTTGAACACAAAGATCCAGAAGTACACCCAGTC...CAGCCTGGCCTGGAATCCATTATGTAACCTAGGCTGGCCTTGAACTTGCAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS-3UTR CCA 90 bp ATTTCCGTGTGCCCACACATCTTCACTCATTCACTTACATCTTTACTCAGTGCAACACAGAGGATGAGCTaGAGGGCTTCTCCAAGTGAG +
Preference number: 4 (lower is better)
Translates to: ISVCPHIFTHSLTSLLSATQRMS*RASPSE
Trigger: CTCACTTGGAGAAGCCCTCCAGCTCATCCTCTGTGT...TGCACTGAGTAAAGATGTAAGTGAATGAGTGAAGATGTGTGGGCACACGGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR CAA 72 bp GTGGGGATCTCTGCAAACACCTTAACCAGCAGGGTGTaGATCCAAGAGAAGCAAGAAGAAAGTCTGTCTCAA +
Preference number: 4 (lower is better)
Translates to: VGISANTLTSRV*IQEKQEESLSQ
Trigger: TTGAGACAGACTTTCTTCTTGCTTCTCTTGGATCAACACCCTGCTGGTTAAGGTGTTTGCAGAGATCCCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CAA 72 bp TATTTCCCTTCATGTCCAAGGGTAATCTGGGGCAGTTaGTTAATTCTGCTCCCTTTTCACCAGGGATGGAGC +
Preference number: 4 (lower is better)
Translates to: YFPSCPRVIWGS*LILLPFHQGWS
Trigger: GCTCCATCCCTGGTGAAAAGGGAGCAGAATTAACAAACTGCCCCAGATTACCCTTGGACATGAAGGGAAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp CATACAGATAGGTTCTCTGAATTAACTGAGGAAGCAGGCTCAGGGAAAACAGTGTCTTCAAGATCCTCTTaGGAAGGTCAAACCGCCTCA +
Preference number: 4 (lower is better)
Translates to: HTDRFSELTEEAGSGKTVSSRSS*EGQTAS
Trigger: TGAGGCGGTTTGACCTTCTCAAGAGGATCTTGAAGA...CACTGTTTTCCCTGAGCCTGCTTCCTCAGTTAATTCAGAGAACCTATCTGTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp ACAAGCACACAGAGTCCATTTTATGTTAGCCAATTACTCCTGGGTCTGGGGCCTGAGAGTATTCATATTTaGTCTTGCTCCTTGGCTGGA +
Preference number: 4 (lower is better)
Translates to: TSTQSPFYVSQLLLGLGPESIHI*SCSLAG
Trigger: TCCAGCCAAGGAGCAAGATCAAATATGAATACTCTC...AGGCCCCAGACCCAGGAGTAATTGGCTAACATAAAATGGACTCTGTGTGCTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp AACTGGAAATGGTATAAGCCTTTGAAACCTCAAAGCCTGTCCCTGTCCCCCAGTCCCATTCTGGAGCCTTaGGTTATACTTGATACTCAA +
Preference number: 4 (lower is better)
Translates to: NWKWYKPLKPQSLSLSPSPILEP*VILDTQ
Trigger: TTGAGTATCAAGTATAACTCAAGGCTCCAGAATGGG...ACTGGGGGACAGGGACAGGCTTTGAGGTTTCAAAGGCTTATACCATTTCCAGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp AGCTTCCTTATCTACTCTCTGCCCTTGCAATCTGTTCCTGCCAAAGAAACAAAAATCTTGCTCCTTGGCTaGACTGGGTGTACTTCTGGA +
Preference number: 4 (lower is better)
Translates to: SFLIYSLPLQSVPAKETKILLLG*TGCTSG
Trigger: TCCAGAAGTACACCCAGTCCAGCCAAGGAGCAAGAT...TTTTGTTTCTTTGGCAGGAACAGATTGCAAGGGCAGAGAGTAGATAAGGAAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp CATACAGATAGGTTCTCTGAATTAACTGAGGAAGCAGGCTCAGGGAAAACAGTGGATAGCCCAGGGAAGTaGAGGTCTCTTGAAGATATT +
Preference number: 4 (lower is better)
Translates to: HTDRFSELTEEAGSGKTVDSPGK*RSLEDI
Trigger: AATATCTTCAAGAGACCTTCACTTCCCTGGGCTATC...CACTGTTTTCCCTGAGCCTGCTTCCTCAGTTAATTCAGAGAACCTATCTGTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR GCA 90 bp ATTTCCGTGTGCCCACACATCTTCACTCATTCACTTACATCTTTACTCAGTGCAAGATTCCTAGGGGCTTaGTCTGCATCCTGTAAGTCT +
Preference number: 4 (lower is better)
Translates to: ISVCPHIFTHSLTSLLSARFLGA*SASCKS
Trigger: AGACTTACAGGATGCAGAGCAAGCCCCTAGGAATCT...TGCACTGAGTAAAGATGTAAGTGAATGAGTGAAGATGTGTGGGCACACGGAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR GCA 90 bp GCTTCCTTATCTACTCTCTGCCCTTGCAATCTGTTCCTGCCAAAGAAACAAAAAAGTGAACTTGATCTCTaGCCATCATGCTTTGGGAGC +
Preference number: 4 (lower is better)
Translates to: ASLSTLCPCNLFLPKKQKSELDL*PSCFGS
Trigger: GCTCCCAAAGCATGATGGGCAGAGATCAAGTTCACT...TTTTTGTTTCTTTGGCAGGAACAGATTGCAAGGGCAGAGAGTAGATAAGGAAGC
44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR GCA 90 bp TATGTCTTACTGTTCTCCACACTCTGGCAAAACATCCGACTAAGGAATGTAAGTTGCTGGGAGAGCTTCTaGAGATACACAGAGGATGAG +
Preference number: 4 (lower is better)
Translates to: YVLLFSTLWQNIRLRNVSCWESF*RYTEDE
Trigger: CTCATCCTCTGTGTATCTGCAGAAGCTCTCCCAGCA...ACTTACATTCCTTAGTCGGATGTTTTGCCAGAGTGTGGAGAACAGTAAGACATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp AAATACATTTTAGTACATGCAGAAAATGGAAGCCATGAGCCCGAGGAGGCTGAAAGAAACTCTTGTCCTTaGCTATCTTGCCTCTGCCTG +
Preference number: 4 (lower is better)
Translates to: KYILVHAENGSHEPEEAERNSCP*LSCLCL
Trigger: CAGGCAGAGGCAAGATAGCCAAGGACAAGAGTTTCT...TTCAGCCTCCTCGGGCTCATGGCTTCCATTTTCTGCATGTACTAAAATGTATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS-3UTR TCA 90 bp CAGTATTTCCGTGTGCCCACACATCTTCACTCATTCACTTACATCTTTACTCAGGAGGATACATCGTTCTaGTCTAAGCTCTCACCAATC +
Preference number: 4 (lower is better)
Translates to: QYFRVPTHLHSFTYIFTQEDTSF*SKLSPI
Trigger: GATTGGTGAGAGCTTAGATCAGAACGATGTATCCTC...CTGAGTAAAGATGTAAGTGAATGAGTGAAGATGTGTGGGCACACGGAAATACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp AGCTTCCTTATCTACTCTCTGCCCTTGCAATCTGTTCCTGCCAAAGAAACAAAATTCACCAGTGTTCTTTaGCTGTCACGGTATTCCACA +
Preference number: 4 (lower is better)
Translates to: SFLIYSLPLQSVPAKETKFTSVL*LSRYST
Trigger: TGTGGAATACCGTGACAGTCAAAGAACACTGGTGAA...TTTTGTTTCTTTGGCAGGAACAGATTGCAAGGGCAGAGAGTAGATAAGGAAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp CAGTATTTCCGTGTGCCCACACATCTTCACTCATTCACTTACATCTTTACTCAGTTCACCAGTGTTCTTTaGCTGTCACGGTATTCCACA +
Preference number: 4 (lower is better)
Translates to: QYFRVPTHLHSFTYIFTQFTSVL*LSRYST
Trigger: TGTGGAATACCGTGACAGTCAAAGAACACTGGTGAA...CTGAGTAAAGATGTAAGTGAATGAGTGAAGATGTGTGGGCACACGGAAATACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp GCAATTATGCCTAGAATCTCAGCAAGCAGACAGAGGCAGAAGATAAATCCCACATGCCAATACAATCAATaGTCAAGCAGATTCCTAGGG +
Preference number: 4 (lower is better)
Translates to: AIMPRISASRQRQKINPTCQYNQ*SSRFLG
Trigger: CCCTAGGAATCTGCTTGATCATTGATTGTATTGGCA...TGTGGGATTTATCTTCTGCCTCTGTCTGCTTGCTGAGATTCTAGGCATAATTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp GCTTCCTTATCTACTCTCTGCCCTTGCAATCTGTTCCTGCCAAAGAAACAAAAAGATAGCCCAGGGAAGTaGAGGTCTCTTGAAGATATT +
Preference number: 4 (lower is better)
Translates to: ASLSTLCPCNLFLPKKQKDSPGK*RSLEDI
Trigger: AATATCTTCAAGAGACCTTCACTTCCCTGGGCTATC...TTTTTGTTTCTTTGGCAGGAACAGATTGCAAGGGCAGAGAGTAGATAAGGAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp ACATTTGCTAATGCACATAGGACAGAGACTAAAAGAAAGCTTTCCACAGTAGTCATCTTGCTCCTTGGCTaGACTGGGTGTACTTCTGGA +
Preference number: 4 (lower is better)
Translates to: TFANAHRTETKRKLSTVVILLLG*TGCTSG
Trigger: TCCAGAAGTACACCCAGTCCAGCCAAGGAGCAAGAT...GACTACTGTGGAAAGCTTTCTTTTAGTCTCTGTCCTATGTGCATTAGCAAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS-3UTR CCA 90 bp ACAAGCACACAGAGTCCATTTTATGTTAGCCAATTACTCCTGGGTCTGGGGCCTTTATGTCATGTGACTTaGGAAACAAGAAAAGCTGGA +
Preference number: 4 (lower is better)
Translates to: TSTQSPFYVSQLLLGLGPLCHVT*ETRKAG
Trigger: TCCAGCTTTTCTTGTTTCCCAAGTCACATGACATAA...AGGCCCCAGACCCAGGAGTAATTGGCTAACATAAAATGGACTCTGTGTGCTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp CATACAGATAGGTTCTCTGAATTAACTGAGGAAGCAGGCTCAGGGAAAACAGTGTATCGGCGAACAATCTaGGTTATGTCATGTGACTTG +
Preference number: 4 (lower is better)
Translates to: HTDRFSELTEEAGSGKTVYRRTI*VMSCDL
Trigger: CAAGTCACATGACATAACCCAGATTGTTCGCCGATA...CACTGTTTTCCCTGAGCCTGCTTCCTCAGTTAATTCAGAGAACCTATCTGTATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
3UTR CAA 72 bp AATAAATACAGAGCAAACTGGAAATGGTATAAGCCTTaGAAACCTCAAAGCCTGTCCCTGTCCCCCAGTAAC +
Preference number: 4 (lower is better)
Translates to: NKYRANWKWYKP*KPQSLSLSPSN
Trigger: GTTACTGGGGGACAGGGACAGGCTTTGAGGTTTCAAAGGCTTATACCATTTCCAGTTTGCTCTGTATTTATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp AGCTTCCTTATCTACTCTCTGCCCTTGCAATCTGTTCCTGCCAAAGAAACAAAAGACTGGGTGTACTTCTaGATCTTTGTGTTCAAGTCT +
Preference number: 4 (lower is better)
Translates to: SFLIYSLPLQSVPAKETKDWVYF*IFVFKS
Trigger: AGACTTGAACACAAAGATCCAGAAGTACACCCAGTC...TTTTGTTTCTTTGGCAGGAACAGATTGCAAGGGCAGAGAGTAGATAAGGAAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
3UTR CAA 72 bp ACAAACAAACAAACAAACAAACATCTCCATAAAAGCTaGTGTGTGTCCCTCAGTATTTCCGTGTGCCCACAC +
Preference number: 4 (lower is better)
Translates to: TNKQTNKHLHKS*CVSLSISVCPH
Trigger: GTGTGGGCACACGGAAATACTGAGGGACACACACAAGCTTTTATGGAGATGTTTGTTTGTTTGTTTGTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR TCA 90 bp TATGTCTTACTGTTCTCCACACTCTGGCAAAACATCCGACTAAGGAATGTAAGTGAGAGTATTCATATTTaGTCTTGCTCCTTGGCTGGA +
Preference number: 4 (lower is better)
Translates to: YVLLFSTLWQNIRLRNVSESIHI*SCSLAG
Trigger: TCCAGCCAAGGAGCAAGATCAAATATGAATACTCTC...ACTTACATTCCTTAGTCGGATGTTTTGCCAGAGTGTGGAGAACAGTAAGACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp CAGTATTTCCGTGTGCCCACACATCTTCACTCATTCACTTACATCTTTACTCAGGTATTCCACAAATCTTaGCTCTTTACTTCGCCCATT +
Preference number: 4 (lower is better)
Translates to: QYFRVPTHLHSFTYIFTQVFHKS*LFTSPI
Trigger: AATGGGCGAAGTAAAGAGCCAAGATTTGTGGAATAC...CTGAGTAAAGATGTAAGTGAATGAGTGAAGATGTGTGGGCACACGGAAATACTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CCA 90 bp TATGTCTTACTGTTCTCCACACTCTGGCAAAACATCCGACTAAGGAATGTAAGTTTATGTCATGTGACTTaGGAAACAAGAAAAGCTGGA +
Preference number: 4 (lower is better)
Translates to: YVLLFSTLWQNIRLRNVSLCHVT*ETRKAG
Trigger: TCCAGCTTTTCTTGTTTCCCAAGTCACATGACATAA...ACTTACATTCCTTAGTCGGATGTTTTGCCAGAGTGTGGAGAACAGTAAGACATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp TCCTGCAGCCTTAGTTCTACAGGACCCGCCCCTTCACAGGCTCTGGCAGTTCACTGGGCGTCTCCTGCCTaGCTTCAGCTGCTGGGAGAG +
Preference number: 5 (lower is better)
Translates to: SCSLSSTGPAPSQALAVHWASPA*LQLLGE
Trigger: CTCTCCCAGCAGCTGAAGCAAGGCAGGAGACGCCCA...GTGAACTGCCAGAGCCTGTGAAGGGGCGGGTCCTGTAGAACTAAGGCTGCAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS GCA 90 bp TCAACGTGGAGGTCCACGAGTGGGCGTCTCCTGCCTTGCTTCAGCTaGTGGGAGAGCTTCTGCAGATACACAGAGGATGAGCTGGAGGGC +
Preference number: 5 (lower is better)
Translates to: STWRSTSGRLLPCFS*WESFCRYTEDELEG
Trigger: GCCCTCCAGCTCATCCTCTGTGTATCTGCAGAAGCTCTCCCAGCAGCTGAAGCAAGGCAGGAGACGCCCACTCGTGGACCTCCACGTTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS CCA 90 bp ACGTGGAGGTCCACGAGTGGGCGTCTCCTGCCTTGCTTCAGCTGCTaGGAGAGCTTCTGCAGATACACAGAGGATGAGCTGGAGGGCTTC +
Preference number: 5 (lower is better)
Translates to: TWRSTSGRLLPCFSC*ESFCRYTEDELEGF
Trigger: GAAGCCCTCCAGCTCATCCTCTGTGTATCTGCAGAAGCTCTCCCAGCAGCTGAAGCAAGGCAGGAGACGCCCACTCGTGGACCTCCACGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS CCA 90 bp CCACGCATACACTTTGTCCATGAGTTCAACGTGGAGGTCCACGAGTaGGCGTCTCCTGCCTTGCTTCAGCTGCTGGGAGAGCTTCTGCAG +
Preference number: 5 (lower is better)
Translates to: PRIHFVHEFNVEVHE*ASPALLQLLGELLQ
Trigger: CTGCAGAAGCTCTCCCAGCAGCTGAAGCAAGGCAGGAGACGCCCACTCGTGGACCTCCACGTTGAACTCATGGACAAAGTGTATGCGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS GCA 90 bp TCCATGAGTTCAACGTGGAGGTCCACGAGTGGGCGTCTCCTGCCTTaGTTCAGCTGCTGGGAGAGCTTCTGCAGATACACAGAGGATGAG +
Preference number: 5 (lower is better)
Translates to: SMSSTWRSTSGRLLP*FSCWESFCRYTEDE
Trigger: CTCATCCTCTGTGTATCTGCAGAAGCTCTCCCAGCAGCTGAAGCAAGGCAGGAGACGCCCACTCGTGGACCTCCACGTTGAACTCATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS CCA 90 bp GCTTCAGCTGCTGGGAGAGCTTCTGCAGATACACAGAGGATGAGCTaGAGGGCTTCTCCAAGTGAGATACGTCTGCTGTGCACAGGCTCC +
Preference number: 5 (lower is better)
Translates to: ASAAGRASADTQRMS*RASPSEIRLLCTGS
Trigger: GGAGCCTGTGCACAGCAGACGTATCTCACTTGGAGAAGCCCTCCAGCTCATCCTCTGTGTATCTGCAGAAGCTCTCCCAGCAGCTGAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp ACCCTAGGCCAGGACTCACGGCAGAGCCAGAAGCAGCCAGAAGCAGCCGTAACCAAGAAACTCTTGTCCTaGGCTATCTTGCCTCTGCCT +
Preference number: 5 (lower is better)
Translates to: TLGQDSRQSQKQPEAAVTKKLLS*AILPLP
Trigger: AGGCAGAGGCAAGATAGCCAAGGACAAGAGTTTCTT...GGTTACGGCTGCTTCTGGCTGCTTCTGGCTCTGCCGTGAGTCCTGGCCTAGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS TCA 90 bp GCCTTGCTTCAGCTGCTGGGAGAGCTTCTGCAGATACACAGAGGATaGGCTGGAGGGCTTCTCCAAGTGAGATACGTCTGCTGTGCACAG +
Preference number: 5 (lower is better)
Translates to: ALLQLLGELLQIHRG*AGGLLQVRYVCCAQ
Trigger: CTGTGCACAGCAGACGTATCTCACTTGGAGAAGCCCTCCAGCTCATCCTCTGTGTATCTGCAGAAGCTCTCCCAGCAGCTGAAGCAAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp AGGACCCGCCCCTTCACAGGCTCTGGCAGTTCACAGATGATATGGATGCTGGGGTCCTCCACGGTTGCTTaGTCTGTCTTCAAGATCCTC +
Preference number: 5 (lower is better)
Translates to: RTRPFTGSGSSQMIWMLGSSTVA*SVFKIL
Trigger: GAGGATCTTGAAGACAGACAAAGCAACCGTGGAGGA...CCCCAGCATCCATATCATCTGTGAACTGCCAGAGCCTGTGAAGGGGCGGGTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp CAGCTGGTGAGGGTCAGGCCAGCCCTCCTGTGCTCATGGGTAACTATTTTTCTATGTGCAGTGTCTGGGTaGCAGGGGCTTAGAGTCCAC +
Preference number: 5 (lower is better)
Translates to: QLVRVRPALLCSWVTIFLCAVSG*QGLRVH
Trigger: GTGGACTCTAAGCCCCTGCAACCCAGACACTGCACA...TAGAAAAATAGTTACCCATGAGCACAGGAGGGCTGGCCTGACCCTCACCAGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp TCCCCCAGTAACAGTTCCTCTAGCGAGGCCACACCTTTCAAACAGCACACCTGGGGTGGTCCTCCACGGTaGCTTTGTCTGTCTTCAAGA +
Preference number: 5 (lower is better)
Translates to: SPSNSSSSEATPFKQHTWGGPPR*LCLSSR
Trigger: TCTTGAAGACAGACAAAGCAACCGTGGAGGACCACC...CCAGGTGTGCTGTTTGAAAGGTGTGGCCTCGCTAGAGGAACTGTTACTGGGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp GGAAGCCATGAGCCCGAGGAGGCTGAAGCAAGAGGAGGCTCATTGCAAGTTCAATCCTCCACGGTTGCTTaGTCTGTCTTCAAGATCCTC +
Preference number: 5 (lower is better)
Translates to: GSHEPEEAEARGGSLQVQSSTVA*SVFKIL
Trigger: GAGGATCTTGAAGACAGACAAAGCAACCGTGGAGGA...TTGAACTTGCAATGAGCCTCCTCTTGCTTCAGCCTCCTCGGGCTCATGGCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS TCA 90 bp GCAGGTGGTCCTCCACGGTTGCTTTGTCTGTCTTCAAGATCCTCTTaGGAAGGTCAAACCGCCTCACTCTGTAGAGCAATTCAGCCAAGG +
Preference number: 5 (lower is better)
Translates to: AGGPPRLLCLSSRSS*EGQTASLCRAIQPR
Trigger: CCTTGGCTGAATTGCTCTACAGAGTGAGGCGGTTTGACCTTCTCAAGAGGATCTTGAAGACAGACAAAGCAACCGTGGAGGACCACCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS GCA 90 bp ATCAGAAACCAGGTGAGGGTTTCTGCGCAGGTGGTCCTCCACGGTTaGTTTGTCTGTCTTCAAGATCCTCTTGAGAAGGTCAAACCGCCT +
Preference number: 5 (lower is better)
Translates to: IRNQVRVSAQVVLHG*FVCLQDPLEKVKPP
Trigger: AGGCGGTTTGACCTTCTCAAGAGGATCTTGAAGACAGACAAAGCAACCGTGGAGGACCACCTGCGCAGAAACCCTCACCTGGTTTCTGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS GCA 90 bp TCTCCATCAGCAGGACCCTATAATCAGAAACCAGGTGAGGGTTTCTaGGCAGGTGGTCCTCCACGGTTGCTTTGTCTGTCTTCAAGATCC +
Preference number: 5 (lower is better)
Translates to: SPSAGPYNQKPGEGF*AGGPPRLLCLSSRS
Trigger: GGATCTTGAAGACAGACAAAGCAACCGTGGAGGACCACCTGCGCAGAAACCCTCACCTGGTTTCTGATTATAGGGTCCTGCTGATGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS GCA 90 bp CAGAGGATGAGCTGGAGGGCTTCTCCAAGTGAGATACGTCTGCTGTaGACAGGCTCCAAAAGATATCAGCTTCTGGGTGAGTTGTGCAGT +
Preference number: 5 (lower is better)
Translates to: QRMSWRASPSEIRLL*TGSKRYQLLGELCS
Trigger: ACTGCACAACTCACCCAGAAGCTGATATCTTTTGGAGCCTGTGCACAGCAGACGTATCTCACTTGGAGAAGCCCTCCAGCTCATCCTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp AGCCATGAGCCCGAGGAGGCTGAAGCAAGAGGAGGCTCATTGCAAGTTCAAGGCGGAGAGTATTCATATTaGATCTTGCTCCTTGGCTGG +
Preference number: 5 (lower is better)
Translates to: SHEPEEAEARGGSLQVQGGEYSY*ILLLGW
Trigger: CCAGCCAAGGAGCAAGATCAAATATGAATACTCTCC...GCCTTGAACTTGCAATGAGCCTCCTCTTGCTTCAGCCTCCTCGGGCTCATGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS-3UTR CAA 90 bp GCAGCCTTAGTTCTACAGGACCCGCCCCTTCACAGGCTCTGGCAGTTCACAGATGGAGAGTATTCATATTaGATCTTGCTCCTTGGCTGG +
Preference number: 5 (lower is better)
Translates to: AALVLQDPPLHRLWQFTDGEYSY*ILLLGW
Trigger: CCAGCCAAGGAGCAAGATCAAATATGAATACTCTCC...ATCTGTGAACTGCCAGAGCCTGTGAAGGGGCGGGTCCTGTAGAACTAAGGCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp TGGTCATCCCTCCTGTTCCTGATCCTGAGCCAACCAGGGCAAGCTCCCCCACTCGGAAGTGAAGGTCTCTaGAAGATATTTTGTGTCGTT +
Preference number: 5 (lower is better)
Translates to: WSSLLFLILSQPGQAPPLGSEGL*KIFCVV
Trigger: AACGACACAAAATATCTTCAAGAGACCTTCACTTCC...GAGTGGGGGAGCTTGCCCTGGTTGGCTCAGGATCAGGAACAGGAGGGATGACCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp TATATCATGCACCCAACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTGCTGTGCAGTGTCTGGGTaGCAGGGGCTTAGAGTCCAC +
Preference number: 5 (lower is better)
Translates to: YIMHPTPLMSPASLSTLCCAVSG*QGLRVH
Trigger: GTGGACTCTAAGCCCCTGCAACCCAGACACTGCACA...GCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGTTGGGTGCATGATATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS GCA 90 bp CATGATCCAAGGAGAACCCTGAGTGAACTTGATCTCTGCCCATCATaGTTTGGGAGCCTCCTAGGCTCACCAGAACACATGCAAAGCTGT +
Preference number: 5 (lower is better)
Translates to: HDPRRTLSELDLCPS*FGSLLGSPEHMQSC
Trigger: ACAGCTTTGCATGTGTTCTGGTGAGCCTAGGAGGCTCCCAAAGCATGATGGGCAGAGATCAAGTTCACTCAGGGTTCTCCTTGGATCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp CAGCTGGTGAGGGTCAGGCCAGCCCTCCTGTGCTCATGGGTAACTATTTTTCTAAAGAAACTCTTGTCCTaGGCTATCTTGCCTCTGCCT +
Preference number: 5 (lower is better)
Translates to: QLVRVRPALLCSWVTIFLKKLLS*AILPLP
Trigger: AGGCAGAGGCAAGATAGCCAAGGACAAGAGTTTCTT...TAGAAAAATAGTTACCCATGAGCACAGGAGGGCTGGCCTGACCCTCACCAGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp GCACCCAACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTGCCCTTGCAACTTCACCAGTGTTCTTaGACTGTCACGGTATTCCAC +
Preference number: 5 (lower is better)
Translates to: APNPTHVSSFLIYSLPLQLHQCS*TVTVFH
Trigger: GTGGAATACCGTGACAGTCAAAGAACACTGGTGAAG...TTGCAAGGGCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGTTGGGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp CAGTATTTCCGTGTGCCCACACATCTTCACTCATTCACTTACATCTTTACTCAGTGGGCGTCTCCTGCCTaGCTTCAGCTGCTGGGAGAG +
Preference number: 5 (lower is better)
Translates to: QYFRVPTHLHSFTYIFTQWASPA*LQLLGE
Trigger: CTCTCCCAGCAGCTGAAGCAAGGCAGGAGACGCCCA...CTGAGTAAAGATGTAAGTGAATGAGTGAAGATGTGTGGGCACACGGAAATACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS TCA 90 bp AGCTTCTGCAGATACACAGAGGATGAGCTGGAGGGCTTCTCCAAGTaGGATACGTCTGCTGTGCACAGGCTCCAAAAGATATCAGCTTCT +
Preference number: 5 (lower is better)
Translates to: SFCRYTEDELEGFSK*DTSAVHRLQKISAS
Trigger: AGAAGCTGATATCTTTTGGAGCCTGTGCACAGCAGACGTATCTCACTTGGAGAAGCCCTCCAGCTCATCCTCTGTGTATCTGCAGAAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp TCATTGCAAGTTCAAGGCCAGCCTAGGTTACATAATGGATTCCAGGCCAGGCTGGTCTTCAAGATCCTCTaGAGAAGGTCAAACCGCCTC +
Preference number: 5 (lower is better)
Translates to: SLQVQGQPRLHNGFQARLVFKIL*RRSNRL
Trigger: GAGGCGGTTTGACCTTCTCAAGAGGATCTTGAAGAC...CAGCCTGGCCTGGAATCCATTATGTAACCTAGGCTGGCCTTGAACTTGCAATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS-3UTR CAA 90 bp GCAGCCTTAGTTCTACAGGACCCGCCCCTTCACAGGCTCTGGCAGTTCACAGATGGAAGTGAAGGTCTCTaGAAGATATTTTGTGTCGTT +
Preference number: 5 (lower is better)
Translates to: AALVLQDPPLHRLWQFTDGSEGL*KIFCVV
Trigger: AACGACACAAAATATCTTCAAGAGACCTTCACTTCC...ATCTGTGAACTGCCAGAGCCTGTGAAGGGGCGGGTCCTGTAGAACTAAGGCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp TATATCATGCACCCAACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTGCGTCTTCAAGATCCTCTaGAGAAGGTCAAACCGCCTC +
Preference number: 5 (lower is better)
Translates to: YIMHPTPLMSPASLSTLCVFKIL*RRSNRL
Trigger: GAGGCGGTTTGACCTTCTCAAGAGGATCTTGAAGAC...GCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGTTGGGTGCATGATATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp AAAGCTTGTGTGTGTCCCTCAGTATTTCCGTGTGCCCACACATCTTCACTCATTGTCTTCAAGATCCTCTaGAGAAGGTCAAACCGCCTC +
Preference number: 5 (lower is better)
Translates to: KACVCPSVFPCAHTSSLIVFKIL*RRSNRL
Trigger: GAGGCGGTTTGACCTTCTCAAGAGGATCTTGAAGAC...AATGAGTGAAGATGTGTGGGCACACGGAAATACTGAGGGACACACACAAGCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp GCACCCAACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTGCCCTTGCAAAGCCTTGAGTTATACTaGATACTCAATTTTGGGAGC +
Preference number: 5 (lower is better)
Translates to: APNPTHVSSFLIYSLPLQSLELY*ILNFGS
Trigger: GCTCCCAAAATTGAGTATCAAGTATAACTCAAGGCT...TTGCAAGGGCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGTTGGGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp TATATCATGCACCCAACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTGCCTTCACCAGTGTTCTTaGACTGTCACGGTATTCCAC +
Preference number: 5 (lower is better)
Translates to: YIMHPTPLMSPASLSTLCLHQCS*TVTVFH
Trigger: GTGGAATACCGTGACAGTCAAAGAACACTGGTGAAG...GCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGTTGGGTGCATGATATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp AGCTTCCTTATCTACTCTCTGCCCTTGCAATCTGTTCCTGCCAAAGAAACAAAAGGTGGTCCTCCACGGTaGCTTTGTCTGTCTTCAAGA +
Preference number: 5 (lower is better)
Translates to: SFLIYSLPLQSVPAKETKGGPPR*LCLSSR
Trigger: TCTTGAAGACAGACAAAGCAACCGTGGAGGACCACC...TTTTGTTTCTTTGGCAGGAACAGATTGCAAGGGCAGAGAGTAGATAAGGAAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS TCA 90 bp TTGGGCCATACTTGCATATCGGCGAACAATCTGGGTTATGTCATGTaGCTTGGGAAACAAGAAAAGCTGGATATGATAGCCCAGGGAAGT +
Preference number: 5 (lower is better)
Translates to: LGHTCISANNLGYVM*LGKQEKLDMIAQGS
Trigger: ACTTCCCTGGGCTATCATATCCAGCTTTTCTTGTTTCCCAAGTCACATGACATAACCCAGATTGTTCGCCGATATGCAAGTATGGCCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS CCA 90 bp GGAGCGAAGCCTGGAGAGTATTCATATTTGATCTTGCTCCTTGGCTaGACTGGGTGTACTTCTGGATCTTTGTGTTCAAGTCTATTCTGT +
Preference number: 5 (lower is better)
Translates to: GAKPGEYSYLILLLG*TGCTSGSLCSSLFC
Trigger: ACAGAATAGACTTGAACACAAAGATCCAGAAGTACACCCAGTCCAGCCAAGGAGCAAGATCAAATATGAATACTCTCCAGGCTTCGCTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS CCA 90 bp TGGAGCCTTGAGTTATACTTGATACTCAATTTTGGGAGCGAAGCCTaGAGAGTATTCATATTTGATCTTGCTCCTTGGCTGGACTGGGTG +
Preference number: 5 (lower is better)
Translates to: WSLELYLILNFGSEA*RVFIFDLAPWLDWV
Trigger: CACCCAGTCCAGCCAAGGAGCAAGATCAAATATGAATACTCTCCAGGCTTCGCTCCCAAAATTGAGTATCAAGTATAACTCAAGGCTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS CCA 90 bp CTGTCACGGTATTCCACAAATCTTGGCTCTTTACTTCGCCCATTCTaGAGCCTTGAGTTATACTTGATACTCAATTTTGGGAGCGAAGCC +
Preference number: 5 (lower is better)
Translates to: LSRYSTNLGSLLRPF*SLELYLILNFGSEA
Trigger: GGCTTCGCTCCCAAAATTGAGTATCAAGTATAACTCAAGGCTCCAGAATGGGCGAAGTAAAGAGCCAAGATTTGTGGAATACCGTGACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS CCA 90 bp CTCACCCTTGAGTTATACTTGATACTCAATTTTGGGAGCGAAGCCTaGAGAGTATTCATATTTGATCTTGCTCCTTGGCTGGACTGGGTG +
Preference number: 5 (lower is better)
Translates to: LTLELYLILNFGSEA*RVFIFDLAPWLDWV
Trigger: CACCCAGTCCAGCCAAGGAGCAAGATCAAATATGAATACTCTCCAGGCTTCGCTCCCAAAATTGAGTATCAAGTATAACTCAAGGGTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS-3UTR CAA 90 bp TATATCATGCACCCAACCCCACTCATGTCTCCAGCTTCCTTATCTACTCTCTGCGTTATGTCATGTGACTaGGGAAACAAGAAAAGCTGG +
Preference number: 5 (lower is better)
Translates to: YIMHPTPLMSPASLSTLCVMSCD*GNKKSW
Trigger: CCAGCTTTTCTTGTTTCCCAAGTCACATGACATAAC...GCAGAGAGTAGATAAGGAAGCTGGAGACATGAGTGGGGTTGGGTGCATGATATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp AACTGGAAATGGTATAAGCCTTTGAAACCTCAAAGCCTGTCCCTGTCCCCCAGTGTTATGTCATGTGACTaGGGAAACAAGAAAAGCTGG +
Preference number: 5 (lower is better)
Translates to: NWKWYKPLKPQSLSLSPSVMSCD*GNKKSW
Trigger: CCAGCTTTTCTTGTTTCCCAAGTCACATGACATAAC...ACTGGGGGACAGGGACAGGCTTTGAGGTTTCAAAGGCTTATACCATTTCCAGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000114313.8
CDS TCA 90 bp CTTGATACTCAATTTTGGGAGCGAAGCCTGGAGAGTATTCATATTTaGTCTTGCTCCTTGGCTGGACTGGGTGTACTTCTGGATCTTTGT +
Preference number: 5 (lower is better)
Translates to: LDTQFWERSLESIHI*SCSLAGLGVLLDLC
Trigger: ACAAAGATCCAGAAGTACACCCAGTCCAGCCAAGGAGCAAGATCAAATATGAATACTCTCCAGGCTTCGCTCCCAAAATTGAGTATCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS TCA 90 bp GTATTCCACAAATCTTGGCTCTTTACTTCGCCCATTCTGGAGCCTTaGGTTATACTTGATACTCAATTTTGGGAGCGAAGCCTGGAGAGT +
Preference number: 5 (lower is better)
Translates to: VFHKSWLFTSPILEP*VILDTQFWERSLES
Trigger: ACTCTCCAGGCTTCGCTCCCAAAATTGAGTATCAAGTATAACTCAAGGCTCCAGAATGGGCGAAGTAAAGAGCCAAGATTTGTGGAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS CCA 90 bp TTTGGGAGCGAAGCCTGGAGAGTATTCATATTTGATCTTGCTCCTTaGCTGGACTGGGTGTACTTCTGGATCTTTGTGTTCAAGTCTATT +
Preference number: 5 (lower is better)
Translates to: FGSEAWRVFIFDLAP*LDWVYFWIFVFKSI
Trigger: AATAGACTTGAACACAAAGATCCAGAAGTACACCCAGTCCAGCCAAGGAGCAAGATCAAATATGAATACTCTCCAGGCTTCGCTCCCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp GGTAGATTCTCTGTGCATGGTTATAGAAGAAACTGGTCTAGATTAGTCTCCTTAGGTGGTCCTCCACGGTaGCTTTGTCTGTCTTCAAGA +
Preference number: 5 (lower is better)
Translates to: GRFSVHGYRRNWSRLVSLGGPPR*LCLSSR
Trigger: TCTTGAAGACAGACAAAGCAACCGTGGAGGACCACC...TAAGGAGACTAATCTAGACCAGTTTCTTCTATAACCATGCACAGAGAATCTACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS TCA 90 bp TTTGATACTCAATTTTGGGAGCGAAGCCTGGAGAGTATTCATATTTaGTCTTGCTCCTTGGCTGGACTGGGTGTACTTCTGGATCTTTGT +
Preference number: 5 (lower is better)
Translates to: FDTQFWERSLESIHI*SCSLAGLGVLLDLC
Trigger: ACAAAGATCCAGAAGTACACCCAGTCCAGCCAAGGAGCAAGATCAAATATGAATACTCTCCAGGCTTCGCTCCCAAAATTGAGTATCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097722.9
CDS-3UTR CAA 90 bp ATTTCCGTGTGCCCACACATCTTCACTCATTCACTTACATCTTTACTCAGTGCAGGTATTCCACAAATCTaGGCTCTTTACTTCGCCCAT +
Preference number: 5 (lower is better)
Translates to: ISVCPHIFTHSLTSLLSAGIPQI*ALYFAH
Trigger: ATGGGCGAAGTAAAGAGCCAAGATTTGTGGAATACC...TGCACTGAGTAAAGATGTAAGTGAATGAGTGAAGATGTGTGGGCACACGGAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp GGTAGATTCTCTGTGCATGGTTATAGAAGAAACTGGTCTAGATTAGTCTCCTTAAAGAAACTCTTGTCCTaGGCTATCTTGCCTCTGCCT +
Preference number: 5 (lower is better)
Translates to: GRFSVHGYRRNWSRLVSLKKLLS*AILPLP
Trigger: AGGCAGAGGCAAGATAGCCAAGGACAAGAGTTTCTT...TAAGGAGACTAATCTAGACCAGTTTCTTCTATAACCATGCACAGAGAATCTACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS-3UTR CAA 90 bp TATGTCTTACTGTTCTCCACACTCTGGCAAAACATCCGACTAAGGAATGTAAGTGGAGAGTATTCATATTaGATCTTGCTCCTTGGCTGG +
Preference number: 5 (lower is better)
Translates to: YVLLFSTLWQNIRLRNVSGEYSY*ILLLGW
Trigger: CCAGCCAAGGAGCAAGATCAAATATGAATACTCTCC...ACTTACATTCCTTAGTCGGATGTTTTGCCAGAGTGTGGAGAACAGTAAGACATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS-3UTR CAA 90 bp TATGTCTTACTGTTCTCCACACTCTGGCAAAACATCCGACTAAGGAATGTAAGTGGTATTCCACAAATCTaGGCTCTTTACTTCGCCCAT +
Preference number: 5 (lower is better)
Translates to: YVLLFSTLWQNIRLRNVSGIPQI*ALYFAH
Trigger: ATGGGCGAAGTAAAGAGCCAAGATTTGTGGAATACC...ACTTACATTCCTTAGTCGGATGTTTTGCCAGAGTGTGGAGAACAGTAAGACATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS TCA 90 bp GTGACTTGGGAAACAAGAAAAGCTGGATATGATAGCCCAGGGAAGTaGAGGTCTCTTGAAGATATTTTGTGTCGTTGCCAATACAATCAA +
Preference number: 5 (lower is better)
Translates to: VTWETRKAGYDSPGK*RSLEDILCRCQYNQ
Trigger: TTGATTGTATTGGCAACGACACAAAATATCTTCAAGAGACCTTCACTTCCCTGGGCTATCATATCCAGCTTTTCTTGTTTCCCAAGTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS CCA 90 bp AAATATAAAACAGAAGGTTTGATACTCAATTTTGGGAGCGAAGCCTaGAGAGTATTCATATTTGATCTTGCTCCTTGGCTGGACTGGGTG +
Preference number: 5 (lower is better)
Translates to: KYKTEGLILNFGSEA*RVFIFDLAPWLDWV
Trigger: CACCCAGTCCAGCCAAGGAGCAAGATCAAATATGAATACTCTCCAGGCTTCGCTCCCAAAATTGAGTATCAAACCTTCTGTTTTATATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097722.9
CDS-3UTR CAA 90 bp TATGTCTTACTGTTCTCCACACTCTGGCAAAACATCCGACTAAGGAATGTAAGTAGCCTTGAGTTATACTaGATACTCAATTTTGGGAGC +
Preference number: 5 (lower is better)
Translates to: YVLLFSTLWQNIRLRNVSSLELY*ILNFGS
Trigger: GCTCCCAAAATTGAGTATCAAGTATAACTCAAGGCT...ACTTACATTCCTTAGTCGGATGTTTTGCCAGAGTGTGGAGAACAGTAAGACATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS TCA 90 bp CTTTACTTCGCCCATTCTGGAGCTTCAAATATAAAACAGAAGGTTTaGTACTCAATTTTGGGAGCGAAGCCTGGAGAGTATTCATATTTG +
Preference number: 5 (lower is better)
Translates to: LYFAHSGASNIKQKV*YSILGAKPGEYSYL
Trigger: CAAATATGAATACTCTCCAGGCTTCGCTCCCAAAATTGAGTATCAAACCTTCTGTTTTATATTTGAAGCTCCAGAATGGGCGAAGTAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097722.9
CDS-3UTR CAA 90 bp TATGGAACAATATCTAAGGAGTCTCTGTTCAGAAGAGCAGACATGATATGCTACACCCTTGAGTTATACTaGATACTCAATTTTGGGAGC +
Preference number: 5 (lower is better)
Translates to: YGTISKESLFRRADMICYTLELY*ILNFGS
Trigger: GCTCCCAAAATTGAGTATCAAGTATAACTCAAGGGT...GTAGCATATCATGTCTGCTCTTCTGAACAGAGACTCCTTAGATATTGTTCCATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS GCA 72 bp TCAACGTGGAGGTCCACGAGTGGGCGTCTCCTGCCTTaGTTCAGCTGCTGGGAGAGCTTCTGCAGATACACA +
Preference number: 6 (lower is better)
Translates to: STWRSTSGRLLP*FSCWESFCRYT
Trigger: TGTGTATCTGCAGAAGCTCTCCCAGCAGCTGAAGCAAGGCAGGAGACGCCCACTCGTGGACCTCCACGTTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS CCA 72 bp CACTTTGTCCATGAGTTCAACGTGGAGGTCCACGAGTaGGCGTCTCCTGCCTTGCTTCAGCTGCTGGGAGAG +
Preference number: 6 (lower is better)
Translates to: HFVHEFNVEVHE*ASPALLQLLGE
Trigger: CTCTCCCAGCAGCTGAAGCAAGGCAGGAGACGCCCACTCGTGGACCTCCACGTTGAACTCATGGACAAAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS CAA 72 bp TTCAACGTGGAGGTCCACGAGTGGGCGTCTCCTGCCTaGCTTCAGCTGCTGGGAGAGCTTCTGCAGATACAC +
Preference number: 6 (lower is better)
Translates to: FNVEVHEWASPA*LQLLGELLQIH
Trigger: GTGTATCTGCAGAAGCTCTCCCAGCAGCTGAAGCAAGGCAGGAGACGCCCACTCGTGGACCTCCACGTTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS TCA 72 bp CAGCTGCTGGGAGAGCTTCTGCAGATACACAGAGGATaGGCTGGAGGGCTTCTCCAAGTGAGATACGTCTGC +
Preference number: 6 (lower is better)
Translates to: QLLGELLQIHRG*AGGLLQVRYVC
Trigger: GCAGACGTATCTCACTTGGAGAAGCCCTCCAGCTCATCCTCTGTGTATCTGCAGAAGCTCTCCCAGCAGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS CCA 72 bp GCTGGGAGAGCTTCTGCAGATACACAGAGGATGAGCTaGAGGGCTTCTCCAAGTGAGATACGTCTGCTGTGC +
Preference number: 6 (lower is better)
Translates to: AGRASADTQRMS*RASPSEIRLLC
Trigger: GCACAGCAGACGTATCTCACTTGGAGAAGCCCTCCAGCTCATCCTCTGTGTATCTGCAGAAGCTCTCCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS GCA 72 bp CAGGTGAGGGTTTCTGCGCAGGTGGTCCTCCACGGTTaGTTTGTCTGTCTTCAAGATCCTCTTGAGAAGGTC +
Preference number: 6 (lower is better)
Translates to: QVRVSAQVVLHG*FVCLQDPLEKV
Trigger: GACCTTCTCAAGAGGATCTTGAAGACAGACAAAGCAACCGTGGAGGACCACCTGCGCAGAAACCCTCACCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS GCA 72 bp GCAGGACCCTATAATCAGAAACCAGGTGAGGGTTTCTaGGCAGGTGGTCCTCCACGGTTGCTTTGTCTGTCT +
Preference number: 6 (lower is better)
Translates to: AGPYNQKPGEGF*AGGPPRLLCLS
Trigger: AGACAGACAAAGCAACCGTGGAGGACCACCTGCGCAGAAACCCTCACCTGGTTTCTGATTATAGGGTCCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS GCA 72 bp AGGAGAACCCTGAGTGAACTTGATCTCTGCCCATCATaGTTTGGGAGCCTCCTAGGCTCACCAGAACACATG +
Preference number: 6 (lower is better)
Translates to: RRTLSELDLCPS*FGSLLGSPEHM
Trigger: CATGTGTTCTGGTGAGCCTAGGAGGCTCCCAAAGCATGATGGGCAGAGATCAAGTTCACTCAGGGTTCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS GCA 72 bp AGCTGGAGGGCTTCTCCAAGTGAGATACGTCTGCTGTaGACAGGCTCCAAAAGATATCAGCTTCTGGGTGAG +
Preference number: 6 (lower is better)
Translates to: SWRASPSEIRLL*TGSKRYQLLGE
Trigger: CTCACCCAGAAGCTGATATCTTTTGGAGCCTGTGCACAGCAGACGTATCTCACTTGGAGAAGCCCTCCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS CAA 90 bp CTGTATTTCTCCTTAGACGAAACACCACTGTTCCACGCATACACTTaGTCCATGAGTTCAACGTGGAGGTCCACGAGTGGGCGTCTCCTG +
Preference number: 6 (lower is better)
Translates to: LYFSLDETPLFHAYT*SMSSTWRSTSGRLL
Trigger: CAGGAGACGCCCACTCGTGGACCTCCACGTTGAACTCATGGACAAAGTGTATGCGTGGAACAGTGGTGTTTCGTCTAAGGAGAAATACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS GCA 72 bp CACGTAGGAGCCAGGATGAGTTTCTTCCTCAGAGTGTaGTGCAGGCTGAGGCTGTATTTCTCCTTAGACGAA +
Preference number: 6 (lower is better)
Translates to: HVGARMSFFLRV*CRLRLYFSLDE
Trigger: TTCGTCTAAGGAGAAATACAGCCTCAGCCTGCAGCACACTCTGAGGAAGAAACTCATCCTGGCTCCTACGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS TCA 72 bp AGATACACAGAGGATGAGCTGGAGGGCTTCTCCAAGTaGGATACGTCTGCTGTGCACAGGCTCCAAAAGATA +
Preference number: 6 (lower is better)
Translates to: RYTEDELEGFSK*DTSAVHRLQKI
Trigger: TATCTTTTGGAGCCTGTGCACAGCAGACGTATCTCACTTGGAGAAGCCCTCCAGCTCATCCTCTGTGTATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS TCA 72 bp CCTCCACGGTTGCTTTGTCTGTCTTCAAGATCCTCTTaGGAAGGTCAAACCGCCTCACTCTGTAGAGCAATT +
Preference number: 6 (lower is better)
Translates to: PPRLLCLSSRSS*EGQTASLCRAI
Trigger: AATTGCTCTACAGAGTGAGGCGGTTTGACCTTCTCAAGAGGATCTTGAAGACAGACAAAGCAACCGTGGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS CAA 72 bp TTGGGAGCGAAGCCTGGAGAGTATTCATATTTGATCTaGCTCCTTGGCTGGACTGGGTGTACTTCTGGATCT +
Preference number: 6 (lower is better)
Translates to: LGAKPGEYSYLI*LLGWTGCTSGS
Trigger: AGATCCAGAAGTACACCCAGTCCAGCCAAGGAGCAAGATCAAATATGAATACTCTCCAGGCTTCGCTCCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS TCA 72 bp CAATTTTGGGAGCGAAGCCTGGAGAGTATTCATATTTaGTCTTGCTCCTTGGCTGGACTGGGTGTACTTCTG +
Preference number: 6 (lower is better)
Translates to: QFWERSLESIHI*SCSLAGLGVLL
Trigger: CAGAAGTACACCCAGTCCAGCCAAGGAGCAAGATCAAATATGAATACTCTCCAGGCTTCGCTCCCAAAATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS TCA 72 bp CGTGAACATGTTCTTGACATGATCCAAGGAGAACCCTaGGTGAACTTGATCTCTGCCCATCATGCTTTGGGA +
Preference number: 6 (lower is better)
Translates to: REHVLDMIQGEP*VNLISAHHALG
Trigger: TCCCAAAGCATGATGGGCAGAGATCAAGTTCACTCAGGGTTCTCCTTGGATCATGTCAAGAACATGTTCACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS TCA 72 bp TGCTGGTACTCCATACACTGGCTCCAGACTCACCCTTaGGTTATACTTGATACTCAATTTTGGGAGCGAAGC +
Preference number: 6 (lower is better)
Translates to: CWYSIHWLQTHP*VILDTQFWERS
Trigger: GCTTCGCTCCCAAAATTGAGTATCAAGTATAACTCAAGGGTGAGTCTGGAGCCAGTGTATGGAGTACCAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS CAA 72 bp CCATACACTGGCTCCAGACTCACCCTTGAGTTATACTaGATACTCAATTTTGGGAGCGAAGCCTGGAGAGTA +
Preference number: 6 (lower is better)
Translates to: PYTGSRLTLELY*ILNFGSEAWRV
Trigger: TACTCTCCAGGCTTCGCTCCCAAAATTGAGTATCAAGTATAACTCAAGGGTGAGTCTGGAGCCAGTGTATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS CAA 90 bp CCAGAACACATGCAAAGCTGTCATAGTCTTGATGTTGGGCCATACTaGCATATCGGCGAACAATCTGGGTTATGTCATGTGACTTGGGAA +
Preference number: 6 (lower is better)
Translates to: PEHMQSCHSLDVGPY*HIGEQSGLCHVTWE
Trigger: TTCCCAAGTCACATGACATAACCCAGATTGTTCGCCGATATGCAAGTATGGCCCAACATCAAGACTATGACAGCTTTGCATGTGTTCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS TCA 72 bp TCCCTTGTAAGGAAAACTAAGGAGGATACATCGTTCTaGTCTAAGCTCTCACCAATCTCCATCAGCAGGACC +
Preference number: 6 (lower is better)
Translates to: SLVRKTKEDTSF*SKLSPISISRT
Trigger: GGTCCTGCTGATGGAGATTGGTGAGAGCTTAGATCAGAACGATGTATCCTCCTTAGTTTTCCTTACAAGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS TCA 72 bp CATACACTGGCTCCAGACTCACCCTTGAGTTATACTTaGTACTCAATTTTGGGAGCGAAGCCTGGAGAGTAT +
Preference number: 6 (lower is better)
Translates to: HTLAPDSPLSYT*YSILGAKPGEY
Trigger: ATACTCTCCAGGCTTCGCTCCCAAAATTGAGTATCAAGTATAACTCAAGGGTGAGTCTGGAGCCAGTGTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS CCA 72 bp GAAGCCTGGAGAGTATTCATATTTGATCTTGCTCCTTaGCTGGACTGGGTGTACTTCTGGATCTTTGTGTTC +
Preference number: 6 (lower is better)
Translates to: EAWRVFIFDLAP*LDWVYFWIFVF
Trigger: GAACACAAAGATCCAGAAGTACACCCAGTCCAGCCAAGGAGCAAGATCAAATATGAATACTCTCCAGGCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS CCA 72 bp CATATCGGCGAACAATCTGGGTTATGTCATGTGACTTaGGAAACAAGAAAAGCTGGATATGATAGCCCAGGG +
Preference number: 6 (lower is better)
Translates to: HIGEQSGLCHVT*ETRKAGYDSPG
Trigger: CCCTGGGCTATCATATCCAGCTTTTCTTGTTTCCCAAGTCACATGACATAACCCAGATTGTTCGCCGATATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS CAA 72 bp TCAATTTTGGGAGCGAAGCCTGGAGAGTATTCATATTaGATCTTGCTCCTTGGCTGGACTGGGTGTACTTCT +
Preference number: 6 (lower is better)
Translates to: SILGAKPGEYSY*ILLLGWTGCTS
Trigger: AGAAGTACACCCAGTCCAGCCAAGGAGCAAGATCAAATATGAATACTCTCCAGGCTTCGCTCCCAAAATTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS CAA 90 bp TACTCAATTTTGGGAGCGAAGCCTGGAGAGTATTCATATTTGATCTaGCTCCTTGGCTGGACTGGGTGTACTTCTGGATCTTTGTGTTCA +
Preference number: 6 (lower is better)
Translates to: YSILGAKPGEYSYLI*LLGWTGCTSGSLCS
Trigger: TGAACACAAAGATCCAGAAGTACACCCAGTCCAGCCAAGGAGCAAGATCAAATATGAATACTCTCCAGGCTTCGCTCCCAAAATTGAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS CAA 90 bp GCTGGTACTCCATACACTGGCTCCAGACTCACCCTTGAGTTATACTaGATACTCAATTTTGGGAGCGAAGCCTGGAGAGTATTCATATTT +
Preference number: 6 (lower is better)
Translates to: AGTPYTGSRLTLELY*ILNFGSEAWRVFIF
Trigger: AAATATGAATACTCTCCAGGCTTCGCTCCCAAAATTGAGTATCAAGTATAACTCAAGGGTGAGTCTGGAGCCAGTGTATGGAGTACCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114309.8
CDS TCA 72 bp CCTGATTCCTGGATGGATGTCTTCACCAGTGTTCTTTaGCTGTCACGGTATTCCACAAATCTTGGCTCTTTA +
Preference number: 6 (lower is better)
Translates to: PDSWMDVFTSVL*LSRYSTNLGSL
Trigger: TAAAGAGCCAAGATTTGTGGAATACCGTGACAGTCAAAGAACACTGGTGAAGACATCCATCCAGGAATCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS CCA 72 bp CCTGGAGAGTATTCATATTTGATCTTGCTCCTTGGCTaGACTGGGTGTACTTCTGGATCTTTGTGTTCAAGT +
Preference number: 6 (lower is better)
Translates to: PGEYSYLILLLG*TGCTSGSLCSS
Trigger: ACTTGAACACAAAGATCCAGAAGTACACCCAGTCCAGCCAAGGAGCAAGATCAAATATGAATACTCTCCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS CAA 72 bp CCAGTGTTCTTTGACTGTCACGGTATTCCACAAATCTaGGCTCTTTACTTCGCCCATTCTGGAGCTTCAAAT +
Preference number: 6 (lower is better)
Translates to: PVFFDCHGIPQI*ALYFAHSGASN
Trigger: ATTTGAAGCTCCAGAATGGGCGAAGTAAAGAGCCAAGATTTGTGGAATACCGTGACAGTCAAAGAACACTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097722.9
CDS TCA 72 bp ACTTGCATATCGGCGAACAATCTGGGTTATGTCATGTaGCTTGGGAAACAAGAAAAGCTGGATATGATAGCC +
Preference number: 6 (lower is better)
Translates to: TCISANNLGYVM*LGKQEKLDMIA
Trigger: GGCTATCATATCCAGCTTTTCTTGTTTCCCAAGTCACATGACATAACCCAGATTGTTCGCCGATATGCAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS CCA 72 bp ACAGAAGGTTTGATACTCAATTTTGGGAGCGAAGCCTaGAGAGTATTCATATTTGATCTTGCTCCTTGGCTG +
Preference number: 6 (lower is better)
Translates to: TEGLILNFGSEA*RVFIFDLAPWL
Trigger: CAGCCAAGGAGCAAGATCAAATATGAATACTCTCCAGGCTTCGCTCCCAAAATTGAGTATCAAACCTTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097722.9
CDS CCA 72 bp CAGTGTTCTTTGACTGTCACGGTATTCCACAAATCTTaGCTCTTTACTTCGCCCATTCTGGAGCTTCAAATA +
Preference number: 6 (lower is better)
Translates to: QCSLTVTVFHKS*LFTSPILELQI
Trigger: TATTTGAAGCTCCAGAATGGGCGAAGTAAAGAGCCAAGATTTGTGGAATACCGTGACAGTCAAAGAACACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097722.9
CDS CAA 72 bp CGCCCATTCTGGAGCTTCAAATATAAAACAGAAGGTTaGATACTCAATTTTGGGAGCGAAGCCTGGAGAGTA +
Preference number: 6 (lower is better)
Translates to: RPFWSFKYKTEG*ILNFGSEAWRV
Trigger: TACTCTCCAGGCTTCGCTCCCAAAATTGAGTATCAAACCTTCTGTTTTATATTTGAAGCTCCAGAATGGGCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097722.9
CDS TCA 72 bp GAAACAAGAAAAGCTGGATATGATAGCCCAGGGAAGTaGAGGTCTCTTGAAGATATTTTGTGTCGTTGCCAA +
Preference number: 6 (lower is better)
Translates to: ETRKAGYDSPGK*RSLEDILCRCQ
Trigger: TTGGCAACGACACAAAATATCTTCAAGAGACCTTCACTTCCCTGGGCTATCATATCCAGCTTTTCTTGTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000097722.9
ENSMUST00000114313.8
CDS CCA 72 bp GAGTTATACTTGATACTCAATTTTGGGAGCGAAGCCTaGAGAGTATTCATATTTGATCTTGCTCCTTGGCTG +
Preference number: 6 (lower is better)
Translates to: ELYLILNFGSEA*RVFIFDLAPWL
Trigger: CAGCCAAGGAGCAAGATCAAATATGAATACTCTCCAGGCTTCGCTCCCAAAATTGAGTATCAAGTATAACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069333.8
ENSMUST00000114309.8
ENSMUST00000114313.8
CDS CAA 90 bp ATGTCTTCACCAGTGTTCTTTGACTGTCACGGTATTCCACAAATCTaGGCTCTTTACTTCGCCCATTCTGGAGCTTCAAATATAAAACAG +
Preference number: 6 (lower is better)
Translates to: MSSPVFFDCHGIPQI*ALYFAHSGASNIKQ
Trigger: CTGTTTTATATTTGAAGCTCCAGAATGGGCGAAGTAAAGAGCCAAGATTTGTGGAATACCGTGACAGTCAAAGAACACTGGTGAAGACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097722.9
CDS CCA 72 bp TATTCCACAAATCTTGGCTCTTTACTTCGCCCATTCTaGAGCCTTGAGTTATACTTGATACTCAATTTTGGG +
Preference number: 6 (lower is better)
Translates to: YSTNLGSLLRPF*SLELYLILNFG
Trigger: CCCAAAATTGAGTATCAAGTATAACTCAAGGCTCCAGAATGGGCGAAGTAAAGAGCCAAGATTTGTGGAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069333.8
ENSMUST00000114313.8
CDS CAA 90 bp TCTTTACTTCGCCCATTCTGGAGCTTCAAATATAAAACAGAAGGTTaGATACTCAATTTTGGGAGCGAAGCCTGGAGAGTATTCATATTT +
Preference number: 6 (lower is better)
Translates to: SLLRPFWSFKYKTEG*ILNFGSEAWRVFIF
Trigger: AAATATGAATACTCTCCAGGCTTCGCTCCCAAAATTGAGTATCAAACCTTCTGTTTTATATTTGAAGCTCCAGAATGGGCGAAGTAAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097722.9