Pregenerated sensors for CFL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062929Ensembl transcript IDs: ENSMUST00000078124.8, ENSMUST00000223450.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATAAGACAGGAAGGCATTCCTTGGGAATACAGAAAAGTAACCATATaGAACAGTCTCATGGCAATACTGACAGGCTTCTTATATTCACTC | + |
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Preference number: 1 (lower is better) Translates to: IRQEGIPWEYRKVTI*NSLMAILTGFLYSL Trigger: GAGTGAATATAAGAAGCCTGTCAGTATTGCCATGAGACTGTTTCATATGGTTACTTTTCTGTATTCCCAAGGAATGCCTTCCTGTCTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR CCA 90 bp | TTCCTTAGTGCTAAAAAGATCCCAAGTCATTTGTGTAGTTTTAAATaGAAGCCTAGACATTTAACCACTATGTTAATGTTCTCATCTGGG | + |
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Preference number: 1 (lower is better) Translates to: FLSAKKIPSHLCSFK*KPRHLTTMLMFSSG Trigger: CCCAGATGAGAACATTAACATAGTGGTTAAATGTCTAGGCTTCCATTTAAAACTACACAAATGACTTGGGATCTTTTTAGCACTAAGGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR GCA 90 bp | GCGCACACGGAGCAGATCAAATTCTCTATAAGGAGAAAGCTCTGGGCCACAGCCGGGAAACTACAACACTaGCCCCCAGTTTCTCTCCCA | + |
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Preference number: 2 (lower is better) Translates to: AHTEQIKFSIRRKLWATAGKLQH*PPVSLP Trigger: TGGGAGAGAAACTGGGGGGCAGTGTTGTAGTTTCCC...GGCTGTGGCCCAGAGCTTTCTCCTTATAGAGAATTTGATCTGCTCCGTGTGCGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223450.2 |
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| 3UTR-3UTR TCA 90 bp | TCCTATCTTCTGATAAGAGCATTCTTCAGAGCTCTGGGGTCAGAGTCCAGAGCCCACGAACGGGACCAGTaGAAAGGGAATAAACAAAAA | + |
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Preference number: 2 (lower is better) Translates to: SYLLIRAFFRALGSESRAHERDQ*KGNKQK Trigger: TTTTTGTTTATTCCCTTTTCACTGGTCCCGTTCGTG...GGCTCTGGACTCTGACCCCAGAGCTCTGAAGAATGCTCTTATCAGAAGATAGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR TCA 90 bp | CAAATTCTCTATAAGGAGAAAGCTCTGGGCCACAGCCAAGTTCCATTACTAAGCACAATTCCAGTGGACTaGGCTGGAGAGATACGTGTA | + |
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Preference number: 2 (lower is better) Translates to: QILYKEKALGHSQVPLLSTIPVD*AGEIRV Trigger: TACACGTATCTCTCCAGCTCAGTCCACTGGAATTGT...GCTTAGTAATGGAACTTGGCTGTGGCCCAGAGCTTTCTCCTTATAGAGAATTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR TCA 90 bp | ACAGTAGTGTACACTCATCGGGAAACCAAAGACATTAGCACAGCTGTTTCTTTGACAATTCCAGTGGACTaGGCTGGAGAGATACGTGTA | + |
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Preference number: 2 (lower is better) Translates to: TVVYTHRETKDISTAVSLTIPVD*AGEIRV Trigger: TACACGTATCTCTCCAGCTCAGTCCACTGGAATTGT...CAAAGAAACAGCTGTGCTAATGTCTTTGGTTTCCCGATGAGTGTACACTACTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR TCA 90 bp | GCTATTCACATTGACAACCACATCCATTGTAACGTTCACTGCAAGGAAGGCATGCACGAACGGGACCAGTaGAAAGGGAATAAACAAAAA | + |
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Preference number: 2 (lower is better) Translates to: AIHIDNHIHCNVHCKEGMHERDQ*KGNKQK Trigger: TTTTTGTTTATTCCCTTTTCACTGGTCCCGTTCGTG...CATGCCTTCCTTGCAGTGAACGTTACAATGGATGTGGTTGTCAATGTGAATAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR CCA 90 bp | TCTCATGCTTCTAAGCAGCCTTACCAAAAAGCCACAGAAAGGTCTGGAACAACTCTAATACAATTCCAGTaGACTGAGCTGGAGAGATAC | + |
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Preference number: 2 (lower is better) Translates to: SHASKQPYQKATERSGTTLIQFQ*TELERY Trigger: GTATCTCTCCAGCTCAGTCCACTGGAATTGTATTAG...AGTTGTTCCAGACCTTTCTGTGGCTTTTTGGTAAGGCTGCTTAGAAGCATGAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR CCA 90 bp | CAAATTCTCTATAAGGAGAAAGCTCTGGGCCACAGCCAAGTTCCATTACTAAGCCAGGAAGGCATTCCTTaGGAATACAGAAAAGTAACC | + |
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Preference number: 2 (lower is better) Translates to: QILYKEKALGHSQVPLLSQEGIP*EYRKVT Trigger: GGTTACTTTTCTGTATTCCCAAGGAATGCCTTCCTG...GCTTAGTAATGGAACTTGGCTGTGGCCCAGAGCTTTCTCCTTATAGAGAATTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR CCA 90 bp | TCTCATGCTTCTAAGCAGCCTTACCAAAAAGCCACAGAAAGGTCTGGAACAACTACTCACAGCAACAGCTaGAAGGCTGAAATCAAATTC | + |
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Preference number: 2 (lower is better) Translates to: SHASKQPYQKATERSGTTTHSNS*KAEIKF Trigger: GAATTTGATTTCAGCCTTCCAGCTGTTGCTGTGAGT...AGTTGTTCCAGACCTTTCTGTGGCTTTTTGGTAAGGCTGCTTAGAAGCATGAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR GCA 90 bp | TCTCATGCTTCTAAGCAGCCTTACCAAAAAGCCACAGAAAGGTCTGGAACAACTTGCCACAATTTTTATTaGAACGTGGCCACTTTTGTG | + |
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Preference number: 2 (lower is better) Translates to: SHASKQPYQKATERSGTTCHNFY*NVATFV Trigger: CACAAAAGTGGCCACGTTGCAATAAAAATTGTGGCA...AGTTGTTCCAGACCTTTCTGTGGCTTTTTGGTAAGGCTGCTTAGAAGCATGAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGTAGTGTACACTCATCGGGAAACCAAAGACATTAGCACAGCTGTTTCTTTGCTAATACAATTCCAGTaGACTGAGCTGGAGAGATAC | + |
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Preference number: 2 (lower is better) Translates to: TVVYTHRETKDISTAVSLLIQFQ*TELERY Trigger: GTATCTCTCCAGCTCAGTCCACTGGAATTGTATTAG...CAAAGAAACAGCTGTGCTAATGTCTTTGGTTTCCCGATGAGTGTACACTACTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGTAGTGTACACTCATCGGGAAACCAAAGACATTAGCACAGCTGTTTCTTTGCAGGAAGGCATTCCTTaGGAATACAGAAAAGTAACC | + |
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Preference number: 2 (lower is better) Translates to: TVVYTHRETKDISTAVSLQEGIP*EYRKVT Trigger: GGTTACTTTTCTGTATTCCCAAGGAATGCCTTCCTG...CAAAGAAACAGCTGTGCTAATGTCTTTGGTTTCCCGATGAGTGTACACTACTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR CCA 90 bp | ATTCTCTATAAGGAGAAAGCTCTGGGCCACAGCCAAGTTCCATTACTAAGCTTTGCTATGAAGGAACTGTaGCTGAGACAAACATTCCTA | + |
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Preference number: 2 (lower is better) Translates to: ILYKEKALGHSQVPLLSFAMKEL*LRQTFL Trigger: TAGGAATGTTTGTCTCAGCCACAGTTCCTTCATAGC...AAAGCTTAGTAATGGAACTTGGCTGTGGCCCAGAGCTTTCTCCTTATAGAGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR GCA 90 bp | ATTCTCTATAAGGAGAAAGCTCTGGGCCACAGCCAAGTTCCATTACTAAGCTTTATAGTGTTAAATCTGTaGTGCCAGGTCACAAAAATA | + |
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Preference number: 2 (lower is better) Translates to: ILYKEKALGHSQVPLLSFIVLNL*CQVTKI Trigger: TATTTTTGTGACCTGGCAGCACAGATTTAACACTAT...AAAGCTTAGTAATGGAACTTGGCTGTGGCCCAGAGCTTTCTCCTTATAGAGAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR CCA 90 bp | CATTTTGGAAAAGCTATGAAGGAACTGTGGCTGAGACAAACATTCCTAAACATCCATATGACCGACCAGTaGATAATATTTTCAAGGCAT | + |
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Preference number: 2 (lower is better) Translates to: HFGKAMKELWLRQTFLNIHMTDQ*IIFSRH Trigger: ATGCCTTGAAAATATTATCCACTGGTCGGTCATATG...GATGTTTAGGAATGTTTGTCTCAGCCACAGTTCCTTCATAGCTTTTCCAAAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR CCA 90 bp | AGTGCAACTATAAATAATACTGAAACAAGTCTCCCATATGACCGACCAGTGGATCCCCTTAAGATCAAATaGCACTTGGCTATTATTTTA | + |
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Preference number: 2 (lower is better) Translates to: SATINNTETSLPYDRPVDPLKIK*HLAIIL Trigger: TAAAATAATAGCCAAGTGCCATTTGATCTTAAGGGG...ATCCACTGGTCGGTCATATGGGAGACTTGTTTCAGTATTATTTATAGTTGCACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223450.2 |
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| 3UTR GCA 72 bp | TTTATAGTGGCTTTCCTTCAAGGGAAACTACAACACTaGCCCCCAGTTTCTCTCCCAGCGTCGAGCGGTCCT | + |
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Preference number: 3 (lower is better) Translates to: FIVAFLQGKLQH*PPVSLPASSGP Trigger: AGGACCGCTCGACGCTGGGAGAGAAACTGGGGGGCAGTGTTGTAGTTTCCCTTGAAGGAAAGCCACTATAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223450.2 |
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| 3UTR-3UTR CAA 90 bp | TCCTATCTTCTGATAAGAGCATTCTTCAGAGCTCTGGGGTCAGAGTCCAGAGCCACAGGAAGGCATTCCTaGGGAATACAGAAAAGTAAC | + |
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Preference number: 3 (lower is better) Translates to: SYLLIRAFFRALGSESRATGRHS*GIQKSN Trigger: GTTACTTTTCTGTATTCCCAAGGAATGCCTTCCTGT...GGCTCTGGACTCTGACCCCAGAGCTCTGAAGAATGCTCTTATCAGAAGATAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR CAA 90 bp | TCCTATCTTCTGATAAGAGCATTCTTCAGAGCTCTGGGGTCAGAGTCCAGAGCCGAATCAAGTCCAGTTTaGCCATCTGTGGATGACTAT | + |
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Preference number: 3 (lower is better) Translates to: SYLLIRAFFRALGSESRAESSPV*PSVDDY Trigger: ATAGTCATCCACAGATGGCAAAACTGGACTTGATTC...GGCTCTGGACTCTGACCCCAGAGCTCTGAAGAATGCTCTTATCAGAAGATAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR CAA 90 bp | TCCTATCTTCTGATAAGAGCATTCTTCAGAGCTCTGGGGTCAGAGTCCAGAGCCTGGAACCAGTTTGTTTaGGCTAAAATAAGACAGGAA | + |
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Preference number: 3 (lower is better) Translates to: SYLLIRAFFRALGSESRAWNQFV*AKIRQE Trigger: TTCCTGTCTTATTTTAGCCAAAACAAACTGGTTCCA...GGCTCTGGACTCTGACCCCAGAGCTCTGAAGAATGCTCTTATCAGAAGATAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR CCA 72 bp | GCCACAGAAAGGTCTGGAACAACTCACAGCAACAGCTaGAAGGCTGAAATCAAATTCCTTAGTGCTAAAAAG | + |
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Preference number: 3 (lower is better) Translates to: ATERSGTTHSNS*KAEIKFLSAKK Trigger: CTTTTTAGCACTAAGGAATTTGATTTCAGCCTTCCAGCTGTTGCTGTGAGTTGTTCCAGACCTTTCTGTGGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR CAA 90 bp | ATTCTCTATAAGGAGAAAGCTCTGGGCCACAGCCAAGTTCCATTACTAAGCTTTCTGCCACAATTTTTATaGCAACGTGGCCACTTTTGT | + |
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Preference number: 3 (lower is better) Translates to: ILYKEKALGHSQVPLLSFLPQFL*QRGHFC Trigger: ACAAAAGTGGCCACGTTGCAATAAAAATTGTGGCAG...AAAGCTTAGTAATGGAACTTGGCTGTGGCCCAGAGCTTTCTCCTTATAGAGAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR CAA 90 bp | GAATCAAGTCCAGTTTTGCCATCTGTGGATGACTATGACAAGATACAAAAGCATACAGGAAGGCATTCCTaGGGAATACAGAAAAGTAAC | + |
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Preference number: 3 (lower is better) Translates to: ESSPVLPSVDDYDKIQKHTGRHS*GIQKSN Trigger: GTTACTTTTCTGTATTCCCAAGGAATGCCTTCCTGT...ATGCTTTTGTATCTTGTCATAGTCATCCACAGATGGCAAAACTGGACTTGATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR TCA 72 bp | GAAGGCATTCCTTGGGAATACAGAAAAGTAACCATATaGAACAGTCTCATGGCAATACTGACAGGCTTCTTA | + |
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Preference number: 3 (lower is better) Translates to: EGIPWEYRKVTI*NSLMAILTGFL Trigger: TAAGAAGCCTGTCAGTATTGCCATGAGACTGTTTCATATGGTTACTTTTCTGTATTCCCAAGGAATGCCTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR CCA 72 bp | ATAATACTGAAACAAGTCTCCCATATGACCGACCAGTaGATAATATTTTCAAGGCATTCAGTTAGCTTACCC | + |
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Preference number: 3 (lower is better) Translates to: IILKQVSHMTDQ*IIFSRHSVSLP Trigger: GGGTAAGCTAACTGAATGCCTTGAAAATATTATCCACTGGTCGGTCATATGGGAGACTTGTTTCAGTATTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR CAA 90 bp | CATTTTGGAAAAGCTATGAAGGAACTGTGGCTGAGACAAACATTCCTAAACATCTGGAACCAGTTTGTTTaGGCTAAAATAAGACAGGAA | + |
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Preference number: 3 (lower is better) Translates to: HFGKAMKELWLRQTFLNIWNQFV*AKIRQE Trigger: TTCCTGTCTTATTTTAGCCAAAACAAACTGGTTCCA...GATGTTTAGGAATGTTTGTCTCAGCCACAGTTCCTTCATAGCTTTTCCAAAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| 3UTR-3UTR CAA 90 bp | GAATCAAGTCCAGTTTTGCCATCTGTGGATGACTATGACAAGATACAAAAGCATTCTAAGCTATTCACATaGACAACCACATCCATTGTA | + |
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Preference number: 3 (lower is better) Translates to: ESSPVLPSVDDYDKIQKHSKLFT*TTTSIV Trigger: TACAATGGATGTGGTTGTCAATGTGAATAGCTTAGA...ATGCTTTTGTATCTTGTCATAGTCATCCACAGATGGCAAAACTGGACTTGATTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| CDS-3UTR GCA 90 bp | TCCTATCTTCTGATAAGAGCATTCTTCAGAGCTCTGGGGTCAGAGTCCAGAGCCGGGAAACTACAACACTaGCCCCCAGTTTCTCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: SYLLIRAFFRALGSESRAGKLQH*PPVSLP Trigger: TGGGAGAGAAACTGGGGGGCAGTGTTGTAGTTTCCC...GGCTCTGGACTCTGACCCCAGAGCTCTGAAGAATGCTCTTATCAGAAGATAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078124.8 |
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| CDS-3UTR CCA 90 bp | CTGTGCTGCCAGGTCACAAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAAGCCACCAAGATCTGCTTaGCTTCCTCTACAATTATTT | + |
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Preference number: 4 (lower is better) Translates to: LCCQVTKIGLPRQVRCMKPPRSA*LPLQLF Trigger: AAATAATTGTAGAGGAAGCCAAGCAGATCTTGGTGG...CTTCATACACCTCACCTGCCTTGGCAAGCCTATTTTTGTGACCTGGCAGCACAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078124.8 |
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| CDS-3UTR CCA 90 bp | CTGTGCTGCCAGGTCACAAAAATAGGCTTGCCAAGGCAGGTGAGGTGTATGAAGAGCCCAAGATCTGCTTaGCTTCCTCTACAATTATTT | + |
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Preference number: 4 (lower is better) Translates to: LCCQVTKIGLPRQVRCMKSPRSA*LPLQLF Trigger: AAATAATTGTAGAGGAAGCCAAGCAGATCTTGGGCT...CTTCATACACCTCACCTGCCTTGGCAAGCCTATTTTTGTGACCTGGCAGCACAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223450.2 |
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| CDS-3UTR GCA 90 bp | TCTGTAATCTGCCACAATTTTTATTGCAACGTGGCCACTTTTGTGAGGGTAGGGTCACCCACCAAGATCTaGTTGGCTTCCTCTACAATT | + |
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Preference number: 4 (lower is better) Translates to: SVICHNFYCNVATFVRVGSPTKI*LASSTI Trigger: AATTGTAGAGGAAGCCAAGCAGATCTTGGTGGGTGA...CCCTACCCTCACAAAAGTGGCCACGTTGCAATAAAAATTGTGGCAGATTACAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078124.8 |
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| 3UTR CAA 72 bp | CGCCTGTCTTACATGCCAGTAGAATCAAGTCCAGTTTaGCCATCTGTGGATGACTATGACAAGATACAAAAG | + |
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Preference number: 4 (lower is better) Translates to: RLSYMPVESSPV*PSVDDYDKIQK Trigger: CTTTTGTATCTTGTCATAGTCATCCACAGATGGCAAAACTGGACTTGATTCTACTGGCATGTAAGACAGGCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078124.8 ENSMUST00000223450.2 |
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| CDS CCA 90 bp | AGGGGTCCTCTACAGTGTCACCAATGTCACCCACCAAGATCTGCTTaGCTTCCTCTACAATTATTTGTCTTTTGTCATCGCTCAAACAGA | + |
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Preference number: 5 (lower is better) Translates to: RGPLQCHQCHPPRSA*LPLQLFVFCHRSNR Trigger: TCTGTTTGAGCGATGACAAAAGACAAATAATTGTAGAGGAAGCCAAGCAGATCTTGGTGGGTGACATTGGTGACACTGTAGAGGACCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078124.8 |
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| CDS-3UTR CAA 90 bp | ATTCTCTATAAGGAGAAAGCTCTGGGCCACAGCCAAGTTCCATTACTAAGCTTTCCCACCAAGATCTGCTaGGCTTCCTCTACAATTATT | + |
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Preference number: 5 (lower is better) Translates to: ILYKEKALGHSQVPLLSFPTKIC*ASSTII Trigger: AATAATTGTAGAGGAAGCCAAGCAGATCTTGGTGGG...AAAGCTTAGTAATGGAACTTGGCTGTGGCCCAGAGCTTTCTCCTTATAGAGAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078124.8 |
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| CDS CCA 72 bp | CTACAGTGTCACCAATGTCACCCACCAAGATCTGCTTaGCTTCCTCTACAATTATTTGTCTTTTGTCATCGC | + |
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Preference number: 6 (lower is better) Translates to: LQCHQCHPPRSA*LPLQLFVFCHR Trigger: GCGATGACAAAAGACAAATAATTGTAGAGGAAGCCAAGCAGATCTTGGTGGGTGACATTGGTGACACTGTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078124.8 |
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| CDS CAA 72 bp | GGAGCCCAAGATCTGCTTGGCTTCCTCTACAATTATTaGTCTTTTGTCATCGCTCAAACAGAAGAGAACTGC | + |
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Preference number: 6 (lower is better) Translates to: GAQDLLGFLYNY*SFVIAQTEENC Trigger: GCAGTTCTCTTCTGTTTGAGCGATGACAAAAGACAAATAATTGTAGAGGAAGCCAAGCAGATCTTGGGCTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223450.2 |
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| CDS GCA 72 bp | TCCTCTACAGTGTCACCAATGTCACCCACCAAGATCTaGTTGGCTTCCTCTACAATTATTTGTCTTTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: SSTVSPMSPTKI*LASSTIICLLS Trigger: TGACAAAAGACAAATAATTGTAGAGGAAGCCAAGCAGATCTTGGTGGGTGACATTGGTGACACTGTAGAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078124.8 |
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| CDS CAA 72 bp | ACCCACCAAGATCTGCTTGGCTTCCTCTACAATTATTaGTCTTTTGTCATCGCTCAAACAGAAGAGAACTGC | + |
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Preference number: 6 (lower is better) Translates to: THQDLLGFLYNY*SFVIAQTEENC Trigger: GCAGTTCTCTTCTGTTTGAGCGATGACAAAAGACAAATAATTGTAGAGGAAGCCAAGCAGATCTTGGTGGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078124.8 |
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| CDS CAA 72 bp | TCTACAGTGTCACCAATGTCACCCACCAAGATCTGCTaGGCTTCCTCTACAATTATTTGTCTTTTGTCATCG | + |
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Preference number: 6 (lower is better) Translates to: STVSPMSPTKIC*ASSTIICLLSS Trigger: CGATGACAAAAGACAAATAATTGTAGAGGAAGCCAAGCAGATCTTGGTGGGTGACATTGGTGACACTGTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078124.8 |
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