Pregenerated sensors for CFHR4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070594Ensembl transcript IDs: ENSMUST00000027612.11, ENSMUST00000111986.8, ENSMUST00000111989.9
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCAAGAGGAATTGAAGGTGGAGGTCCACAAGGAAGTCCAATGCAGTaGGGTAATGACTGCCACCTTCCATCTTTGCACATCATTTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: PRGIEGGGPQGSPMQ*GNDCHLPSLHIISS Trigger: AGAAGAAATGATGTGCAAAGATGGAAGGTGGCAGTCATTACCTCACTGCATTGGACTTCCTTGTGGACCTCCACCTTCAATTCCTCTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027612.11 |
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| CDS GCA 90 bp | CAGTACCAAGAGGAATTGAAGGTGGAGGTCCACAAGGAAGTCCAATaGAGTGAGGTAATGACTGCCACCTTCCATCTTTGCACATCATTT | + |
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Preference number: 5 (lower is better) Translates to: QYQEELKVEVHKEVQ*SEVMTATFHLCTSF Trigger: AAATGATGTGCAAAGATGGAAGGTGGCAGTCATTACCTCACTGCATTGGACTTCCTTGTGGACCTCCACCTTCAATTCCTCTTGGTACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027612.11 |
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| CDS GCA 90 bp | AAGGAAGTCCAATGCAGTGAGGTAATGACTGCCACCTTCCATCTTTaGACATCATTTCTTCTGGGTCCTGAGTTAGGTAATTGTCTTGGC | + |
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Preference number: 5 (lower is better) Translates to: KEVQCSEVMTATFHL*TSFLLGPELGNCLG Trigger: GCCAAGACAATTACCTAACTCAGGACCCAGAAGAAATGATGTGCAAAGATGGAAGGTGGCAGTCATTACCTCACTGCATTGGACTTCCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027612.11 |
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| CDS CCA 90 bp | TCCTCAACACATACAGGCAAGGTTGTCCACATCCCATCAACACACTaGATTTTATTGGGTCCCTTCAGTAGGAATCTAGGTTTGCAATCA | + |
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Preference number: 5 (lower is better) Translates to: SSTHTGKVVHIPSTH*ILLGPFSRNLGLQS Trigger: TGATTGCAAACCTAGATTCCTACTGAAGGGACCCAATAAAATCCAGTGTGTTGATGGGATGTGGACAACCTTGCCTGTATGTGTTGAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS GCA 90 bp | CTTTTCTGGGAGAAACGACTAGTTTTCGGTCTAGAATGGGAACGCTaGATTCTATTTCATAACATGAGGGCGTATCAGACCATCCATAAT | + |
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Preference number: 5 (lower is better) Translates to: LFWEKRLVFGLEWER*ILFHNMRAYQTIHN Trigger: ATTATGGATGGTCTGATACGCCCTCATGTTATGAAATAGAATGCAGCGTTCCCATTCTAGACCGAAAACTAGTCGTTTCTCCCAGAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS GCA 90 bp | GCATTTTGGTGGGTCAGACCACTTTCCTCCTTCACATTTAATAAGTaGTGGTCCATCAATTCCAAAGCCTGTAGAACAATGGTATGTAAC | + |
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Preference number: 5 (lower is better) Translates to: AFWWVRPLSSFTFNK*WSINSKACRTMVCN Trigger: GTTACATACCATTGTTCTACAGGCTTTGGAATTGATGGACCAGCACTTATTAAATGTGAAGGAGGAAAGTGGTCTGACCCACCAAAATGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS CCA 90 bp | CAAGTATTTCACAGTGGTTTCAATCACTTGGGTATTTGGAATCTGTaGTGGAGGAGGGCAGGATATTTTCCTTATACAGTTTGGTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: QVFHSGFNHLGIWNL*WRRAGYFPYTVWFR Trigger: CCTGAACCAAACTGTATAAGGAAAATATCCTGCCCTCCTCCACCACAGATTCCAAATACCCAAGTGATTGAAACCACTGTGAAATACTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS CCA 90 bp | TTTTGGTGGGTCAGACCACTTTCCTCCTTCACATTTAATAAGTGCTaGTCCATCAATTCCAAAGCCTGTAGAACAATGGTATGTAACCTC | + |
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Preference number: 5 (lower is better) Translates to: FWWVRPLSSFTFNKC*SINSKACRTMVCNL Trigger: GAGGTTACATACCATTGTTCTACAGGCTTTGGAATTGATGGACCAGCACTTATTAAATGTGAAGGAGGAAAGTGGTCTGACCCACCAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS CCA 90 bp | TTCTCCATCCAAGTATTTCACAGTGGTTTCAATCACTTGGGTATTTaGAATCTGTGGTGGAGGAGGGCAGGATATTTTCCTTATACAGTT | + |
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Preference number: 5 (lower is better) Translates to: FSIQVFHSGFNHLGI*NLWWRRAGYFPYTV Trigger: AACTGTATAAGGAAAATATCCTGCCCTCCTCCACCACAGATTCCAAATACCCAAGTGATTGAAACCACTGTGAAATACTTGGATGGAGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS TCA 90 bp | CCACTAATGCACTTTGTACGAAATGGCGGTGATCCTCTTGCTTTATaGTATCCATATTTACATTCAAATTCAATATCCTCCCCTGAATGG | + |
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Preference number: 5 (lower is better) Translates to: PLMHFVRNGGDPLAL*YPYLHSNSISSPEW Trigger: CCATTCAGGGGAGGATATTGAATTTGAATGTAAATATGGATATCATAAAGCAAGAGGATCACCGCCATTTCGTACAAAGTGCATTAGTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS TCA 90 bp | GGGATAATTGATGGTGCCACTAATGCACTTTGTACGAAATGGCGGTaGTCCTCTTGCTTTATGATATCCATATTTACATTCAAATTCAAT | + |
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Preference number: 5 (lower is better) Translates to: GIIDGATNALCTKWR*SSCFMISIFTFKFN Trigger: ATTGAATTTGAATGTAAATATGGATATCATAAAGCAAGAGGATCACCGCCATTTCGTACAAAGTGCATTAGTGGCACCATCAATTATCCC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS CCA 72 bp | AGGTGGAGGTCCACAAGGAAGTCCAACACAGCGAGGTaGAGTGCTCCATTTTCCCATGTAGCAGGCTACCCC | + |
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Preference number: 6 (lower is better) Translates to: RWRSTRKSNTAR*SAPFSHVAGYP Trigger: GGGGTAGCCTGCTACATGGGAAAATGGAGCACTCCACCTCGCTGTGTTGGACTTCCTTGTGGACCTCCACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS GCA 72 bp | GAGGTCCACAAGGAAGTCCAACACAGCGAGGTGGAGTaGTCCATTTTCCCATGTAGCAGGCTACCCCATTTT | + |
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Preference number: 6 (lower is better) Translates to: EVHKEVQHSEVE*SIFPCSRLPHF Trigger: AAAATGGGGTAGCCTGCTACATGGGAAAATGGAGCACTCCACCTCGCTGTGTTGGACTTCCTTGTGGACCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS GCA 72 bp | GAGGAATTGAAGGTGGAGGTCCACAAGGAAGTCCAATaGAGTGAGGTAATGACTGCCACCTTCCATCTTTGC | + |
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Preference number: 6 (lower is better) Translates to: EELKVEVHKEVQ*SEVMTATFHLC Trigger: GCAAAGATGGAAGGTGGCAGTCATTACCTCACTGCATTGGACTTCCTTGTGGACCTCCACCTTCAATTCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027612.11 |
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| CDS TCA 72 bp | ATTGAAGGTGGAGGTCCACAAGGAAGTCCAATGCAGTaGGGTAATGACTGCCACCTTCCATCTTTGCACATC | + |
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Preference number: 6 (lower is better) Translates to: IEGGGPQGSPMQ*GNDCHLPSLHI Trigger: GATGTGCAAAGATGGAAGGTGGCAGTCATTACCTCACTGCATTGGACTTCCTTGTGGACCTCCACCTTCAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027612.11 |
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| CDS CCA 72 bp | ATTCTCCACATAATGGAAAACACATTTCCTGACGCATaGGACTTCAGGCTCCCACCCTTGTACTGTGCAACG | + |
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Preference number: 6 (lower is better) Translates to: ILHIMENTFPDA*DFRLPPLYCAT Trigger: CGTTGCACAGTACAAGGGTGGGAGCCTGAAGTCCCATGCGTCAGGAAATGTGTTTTCCATTATGTGGAGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS CAA 72 bp | ATAGGTGGAGGAGGCCCACATTTCCCTCTTGAGTCTTaGCATACTGGCTTTCCAATCCACCGGCCATTAATA | + |
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Preference number: 6 (lower is better) Translates to: IGGGGPHFPLES*HTGFPIHRPLI Trigger: TATTAATGGCCGGTGGATTGGAAAGCCAGTATGCAAAGACTCAAGAGGGAAATGTGGGCCTCCTCCACCTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027612.11 ENSMUST00000111989.9 |
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| CDS CCA 72 bp | CATACAGGCAAGGTTGTCCACATCCCATCAACACACTaGATTTTATTGGGTCCCTTCAGTAGGAATCTAGGT | + |
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Preference number: 6 (lower is better) Translates to: HTGKVVHIPSTH*ILLGPFSRNLG Trigger: ACCTAGATTCCTACTGAAGGGACCCAATAAAATCCAGTGTGTTGATGGGATGTGGACAACCTTGCCTGTATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS CCA 72 bp | TCTCCATCCAAGTATTTCACAGTGGTTTCAATCACTTaGGTATTTGGAATCTGTGGTGGAGGAGGGCAGGAT | + |
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Preference number: 6 (lower is better) Translates to: SPSKYFTVVSIT*VFGICGGGGQD Trigger: ATCCTGCCCTCCTCCACCACAGATTCCAAATACCCAAGTGATTGAAACCACTGTGAAATACTTGGATGGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS CAA 72 bp | AACTCTCTAGCTCAAGAGAAACAGTACCAAGAGGAATaGAAGGTGGAGGTCCACAAGGAAGTCCAATGCAGT | + |
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Preference number: 6 (lower is better) Translates to: NSLAQEKQYQEE*KVEVHKEVQCS Trigger: ACTGCATTGGACTTCCTTGTGGACCTCCACCTTCAATTCCTCTTGGTACTGTTTCTCTTGAGCTAGAGAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027612.11 |
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| CDS GCA 72 bp | GAGAAACGACTAGTTTTCGGTCTAGAATGGGAACGCTaGATTCTATTTCATAACATGAGGGCGTATCAGACC | + |
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Preference number: 6 (lower is better) Translates to: EKRLVFGLEWER*ILFHNMRAYQT Trigger: GGTCTGATACGCCCTCATGTTATGAAATAGAATGCAGCGTTCCCATTCTAGACCGAAAACTAGTCGTTTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS GCA 72 bp | TCCCACCACCTCACCATGGCTGTATTCAACTCTTTTTaGTCCATTAATTTCCCCATTAGGAATTTCAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: SHHLTMAVFNSF*SINFPIRNFRR Trigger: CCTCCTGAAATTCCTAATGGGGAAATTAATGGAGCAAAAAGAGTTGAATACAGCCATGGTGAGGTGGTGGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS GCA 72 bp | CAATGCAGTGAGGTAATGACTGCCACCTTCCATCTTTaGACATCATTTCTTCTGGGTCCTGAGTTAGGTAAT | + |
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Preference number: 6 (lower is better) Translates to: QCSEVMTATFHL*TSFLLGPELGN Trigger: ATTACCTAACTCAGGACCCAGAAGAAATGATGTGCAAAGATGGAAGGTGGCAGTCATTACCTCACTGCATTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS CCA 72 bp | CTTTTCTGGGAGAAACGACTAGTTTTCGGTCTAGAATaGGAACGCTGCATTCTATTTCATAACATGAGGGCG | + |
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Preference number: 6 (lower is better) Translates to: LFWEKRLVFGLE*ERCILFHNMRA Trigger: CGCCCTCATGTTATGAAATAGAATGCAGCGTTCCCATTCTAGACCGAAAACTAGTCGTTTCTCCCAGAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS TCA 72 bp | TTAGGAATTTCAGGAGGTTGTGCACATGATGCTACTTaGCCTTTACATGTAGGGAAACTAGGAGACCATCCA | + |
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Preference number: 6 (lower is better) Translates to: LGISGGCAHDAT*PLHVGKLGDHP Trigger: TGGATGGTCTCCTAGTTTCCCTACATGTAAAGGTCAAGTAGCATCATGTGCACAACCTCCTGAAATTCCTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027612.11 |
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| CDS TCA 72 bp | TCCAATCCACCGGCCATTAATACATGTCACAGTGTCTaGGCCATTCATTTGATAAGGAGATTGACATCTGAC | + |
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Preference number: 6 (lower is better) Translates to: SNPPAINTCHSV*AIHLIRRLTSD Trigger: GTCAGATGTCAATCTCCTTATCAAATGAATGGCTCAGACACTGTGACATGTATTAATGGCCGGTGGATTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027612.11 ENSMUST00000111989.9 |
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| CDS TCA 72 bp | TTAGGAATTTCAGGAGGTTGTGCACATGATGCTACTTaGCCTGCTTTACATGTAGGGAAACTAGGAGACCAT | + |
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Preference number: 6 (lower is better) Translates to: LGISGGCAHDAT*PALHVGKLGDH Trigger: ATGGTCTCCTAGTTTCCCTACATGTAAAGCAGGTCAAGTAGCATCATGTGCACAACCTCCTGAAATTCCTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS CCA 72 bp | AGTGGTTTCAATCACTTGGGTATTTGGAATCTGTGGTaGAGGAGGGCAGGATATTTTCCTTATACAGTTTGG | + |
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Preference number: 6 (lower is better) Translates to: SGFNHLGIWNLW*RRAGYFPYTVW Trigger: CCAAACTGTATAAGGAAAATATCCTGCCCTCCTCCACCACAGATTCCAAATACCCAAGTGATTGAAACCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS CCA 72 bp | CAAGTATTTCACAGTGGTTTCAATCACTTGGGTATTTaGAATCTGTGGTGGAGGAGGGCAGGATATTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: QVFHSGFNHLGI*NLWWRRAGYFP Trigger: AGGAAAATATCCTGCCCTCCTCCACCACAGATTCCAAATACCCAAGTGATTGAAACCACTGTGAAATACTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS TCA 72 bp | AATTTCCCCATTAGGAATTTCAGGAGGTTGTGCACATaGTGCTACTTGACCTGCTTTACATGTAGGGAAACT | + |
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Preference number: 6 (lower is better) Translates to: NFPIRNFRRLCT*CYLTCFTCRET Trigger: AGTTTCCCTACATGTAAAGCAGGTCAAGTAGCATCATGTGCACAACCTCCTGAAATTCCTAATGGGGAAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS CCA 72 bp | TGGTGGAGGAGGGCAGGATATTTTCCTTATACAGTTTaGTTCAGGATTCCATTTTCCATTGATACAGATGGA | + |
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Preference number: 6 (lower is better) Translates to: WWRRAGYFPYTV*FRIPFSIDTDG Trigger: TCCATCTGTATCAATGGAAAATGGAATCCTGAACCAAACTGTATAAGGAAAATATCCTGCCCTCCTCCACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS CAA 90 bp | GTTGGGTCTCAGGATCTCTTCATAATACAGACGTCCATATTTGAATaGTGGAAATTCACAAGATTTCACTTCCCCTTTAGCAGTGGAAAG | + |
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Preference number: 6 (lower is better) Translates to: VGSQDLFIIQTSIFE*WKFTRFHFPFSSGK Trigger: CTTTCCACTGCTAAAGGGGAAGTGAAATCTTGTGAATTTCCACAATTCAAATATGGACGTCTGTATTATGAAGAGATCCTGAGACCCAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS CAA 72 bp | TTCCTTATACAGTTTGGTTCAGGATTCCATTTTCCATaGATACAGATGGAGTGTTCATACTCCTGCTTGTCT | + |
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Preference number: 6 (lower is better) Translates to: FLIQFGSGFHFP*IQMECSYSCLS Trigger: AGACAAGCAGGAGTATGAACACTCCATCTGTATCAATGGAAAATGGAATCCTGAACCAAACTGTATAAGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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| CDS CAA 90 bp | CAGGATATTTTCCTTATACAGTTTGGTTCAGGATTCCATTTTCCATaGATACAGATGGAGTGTTCATACTCCTGCTTGTCTCTACATTTG | + |
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Preference number: 6 (lower is better) Translates to: QDIFLIQFGSGFHFP*IQMECSYSCLSLHL Trigger: CAAATGTAGAGACAAGCAGGAGTATGAACACTCCATCTGTATCAATGGAAAATGGAATCCTGAACCAAACTGTATAAGGAAAATATCCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027612.11 ENSMUST00000111986.8 ENSMUST00000111989.9 |
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