Pregenerated sensors for CFHR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033898Ensembl transcript IDs: ENSMUST00000094489.5, ENSMUST00000194186.6, ENSMUST00000239380.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGTGATCACAGTCATTCCTTTCGGGTCTCTGCTTTGGGGTCTCGCTaGGGTACCATCCATGGTGTGGGTTTGTCTCATTTCAAAGAGAGA | + |
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Preference number: 1 (lower is better) Translates to: CDHSHSFRVSALGSR*GTIHGVGLSHFKER Trigger: TCTCTCTTTGAAATGAGACAAACCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAGACCCGAAAGGAATGACTGTGATCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| 3UTR CCA 90 bp | AAATGTCAAAATGTGATCACAGTCATTCCTTTCGGGTCTCTGCTTTaGGGTCTCGCTGGGGTACCATCCATGGTGTGGGTTTGTCTCATT | + |
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Preference number: 1 (lower is better) Translates to: KCQNVITVIPFGSLL*GLAGVPSMVWVCLI Trigger: AATGAGACAAACCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAGACCCGAAAGGAATGACTGTGATCACATTTTGACATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| 3UTR CAA 90 bp | GTCTCTGCTTTGGGGTCTCGCTGGGGTACCATCCATGGTGTGGGTTaGTCTCATTTCAAAGAGAGAGTCCAGGTCATCTCTCAGGATGAT | + |
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Preference number: 2 (lower is better) Translates to: VSALGSRWGTIHGVG*SHFKERVQVISQDD Trigger: ATCATCCTGAGAGATGACCTGGACTCTCTCTTTGAAATGAGACAAACCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| 3UTR CCA 72 bp | CTGCTTTGGGGTCTCGCTGGGGTACCATCCATGGTGTaGGTTTGTCTCATTTCAAAGAGAGAGTCCAGGTCA | + |
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Preference number: 3 (lower is better) Translates to: LLWGLAGVPSMV*VCLISKRESRS Trigger: TGACCTGGACTCTCTCTTTGAAATGAGACAAACCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| 3UTR CCA 72 bp | GGTCTCTGCTTTGGGGTCTCGCTGGGGTACCATCCATaGTGTGGGTTTGTCTCATTTCAAAGAGAGAGTCCA | + |
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Preference number: 3 (lower is better) Translates to: GLCFGVSLGYHP*CGFVSFQRESP Trigger: TGGACTCTCTCTTTGAAATGAGACAAACCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| 3UTR CCA 72 bp | AGTCATTCCTTTCGGGTCTCTGCTTTGGGGTCTCGCTaGGGTACCATCCATGGTGTGGGTTTGTCTCATTTC | + |
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Preference number: 3 (lower is better) Translates to: SHSFRVSALGSR*GTIHGVGLSHF Trigger: GAAATGAGACAAACCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAGACCCGAAAGGAATGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| 3UTR CCA 72 bp | AATGTGATCACAGTCATTCCTTTCGGGTCTCTGCTTTaGGGTCTCGCTGGGGTACCATCCATGGTGTGGGTT | + |
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Preference number: 3 (lower is better) Translates to: NVITVIPFGSLL*GLAGVPSMVWV Trigger: AACCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAGACCCGAAAGGAATGACTGTGATCACATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| CDS-3UTR TCA 90 bp | TTCCTTTCGGGTCTCTGCTTTGGGGTCTCGCTGGGGTACCATCCATGGTGTGGGATGTCCTTGTTGAGTTaGTACGGATGCATTTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: FLSGLCFGVSLGYHPWCGMSLLS*YGCIWE Trigger: CTCCCAAATGCATCCGTATCAACTCAACAAGGACAT...CCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAGACCCGAAAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| 3UTR CAA 72 bp | AAATGTGATCACAGTCATTCCTTTCGGGTCTCTGCTTaGGGGTCTCGCTGGGGTACCATCCATGGTGTGGGT | + |
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Preference number: 4 (lower is better) Translates to: KCDHSHSFRVSA*GSRWGTIHGVG Trigger: ACCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAGACCCGAAAGGAATGACTGTGATCACATTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| 3UTR CAA 72 bp | TTGGGGTCTCGCTGGGGTACCATCCATGGTGTGGGTTaGTCTCATTTCAAAGAGAGAGTCCAGGTCATCTCT | + |
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Preference number: 4 (lower is better) Translates to: LGSRWGTIHGVG*SHFKERVQVIS Trigger: AGAGATGACCTGGACTCTCTCTTTGAAATGAGACAAACCCACACCATGGATGGTACCCCAGCGAGACCCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| CDS-3UTR TCA 90 bp | TTTGGGGTCTCGCTGGGGTACCATCCATGGTGTGGGTTTGTCTCATTTCAAAGAATACCCAGAAGGTGGTaGAAACCCGTTGTCACACTT | + |
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Preference number: 4 (lower is better) Translates to: FGVSLGYHPWCGFVSFQRIPRRW*KPVVTL Trigger: AAGTGTGACAACGGGTTTTCACCACCTTCTGGGTAT...TCTTTGAAATGAGACAAACCCACACCATGGATGGTACCCCAGCGAGACCCCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| CDS-3UTR TCA 90 bp | CTCTGCTTTGGGGTCTCGCTGGGGTACCATCCATGGTGTGGGTTTGTCTCATTTACAGACGTCCATATTTaGATTGTGGAAATTCACATG | + |
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Preference number: 4 (lower is better) Translates to: LCFGVSLGYHPWCGFVSFTDVHI*IVEIHM Trigger: CATGTGAATTTCCACAATTCAAATATGGACGTCTGT...AAATGAGACAAACCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| CDS-3UTR CCA 90 bp | TTGTCTCATTTCAAAGAGAGAGTCCAGGTCATCTCTCAGGATGATAGCCTCTCCATTTCCTATAGACACTaGGAAGTTGGGTCTCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: LSHFKERVQVISQDDSLSISYRH*EVGSQA Trigger: AGCCTGAGACCCAACTTCCCAGTGTCTATAGGAAAT...GGAGAGGCTATCATCCTGAGAGATGACCTGGACTCTCTCTTTGAAATGAGACAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| CDS-3UTR TCA 90 bp | TTAATATGCCTCTTTACAGCAATAAAATCCTGCCTAAGACAATGCGCATTGCTTTGGAACATAAGGGGGTaGGCATGTCTTTTCTTCCCC | + |
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Preference number: 4 (lower is better) Translates to: LICLFTAIKSCLRQCALLWNIRG*ACLFFP Trigger: GGGGAAGAAAAGACATGCTCACCCCCTTATGTTCCA...AAGCAATGCGCATTGTCTTAGGCAGGATTTTATTGCTGTAAAGAGGCATATTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000239380.2 |
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| CDS-3UTR TCA 90 bp | TTAATATGCCTCTTTACAGCAATAAAATCCTGCCTAAGACAATGCGCATTGCTTATACCCAGAAGGTGGTaGAAACCCGTTGTCACACTT | + |
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Preference number: 4 (lower is better) Translates to: LICLFTAIKSCLRQCALLIPRRW*KPVVTL Trigger: AAGTGTGACAACGGGTTTTCACCACCTTCTGGGTAT...AAGCAATGCGCATTGTCTTAGGCAGGATTTTATTGCTGTAAAGAGGCATATTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239380.2 |
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| CDS-3UTR CCA 90 bp | TTAATATGCCTCTTTACAGCAATAAAATCCTGCCTAAGACAATGCGCATTGCTTATTTCCTATAGACACTaGGAAGTTGGGTCTCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: LICLFTAIKSCLRQCALLISYRH*EVGSQA Trigger: AGCCTGAGACCCAACTTCCCAGTGTCTATAGGAAAT...AAGCAATGCGCATTGTCTTAGGCAGGATTTTATTGCTGTAAAGAGGCATATTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239380.2 |
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| CDS-3UTR TCA 90 bp | TTAATATGCCTCTTTACAGCAATAAAATCCTGCCTAAGACAATGCGCATTGCTTTGTACGAAATGGCAGTaGTCCTCTTGCTTTCTGATA | + |
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Preference number: 4 (lower is better) Translates to: LICLFTAIKSCLRQCALLCTKWQ*SSCFLI Trigger: TATCAGAAAGCAAGAGGATCACTGCCATTTCGTACA...AAGCAATGCGCATTGTCTTAGGCAGGATTTTATTGCTGTAAAGAGGCATATTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239380.2 |
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| CDS-3UTR TCA 90 bp | TTAATATGCCTCTTTACAGCAATAAAATCCTGCCTAAGACAATGCGCATTGCTTACAGACGTCCATATTTaGATTGTGGAAATTCACATG | + |
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Preference number: 4 (lower is better) Translates to: LICLFTAIKSCLRQCALLTDVHI*IVEIHM Trigger: CATGTGAATTTCCACAATTCAAATATGGACGTCTGT...AAGCAATGCGCATTGTCTTAGGCAGGATTTTATTGCTGTAAAGAGGCATATTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239380.2 |
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| CDS-3UTR TCA 90 bp | TTAATATGCCTCTTTACAGCAATAAAATCCTGCCTAAGACAATGCGCATTGCTTCAGTGTGTCTCCATTTaGGAATTATATTGTGTGCTT | + |
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Preference number: 4 (lower is better) Translates to: LICLFTAIKSCLRQCALLQCVSI*ELYCVL Trigger: AAGCACACAATATAATTCTCAAATGGAGACACACTG...AAGCAATGCGCATTGTCTTAGGCAGGATTTTATTGCTGTAAAGAGGCATATTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239380.2 |
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| CDS-3UTR CAA 90 bp | TTTCGGGTCTCTGCTTTGGGGTCTCGCTGGGGTACCATCCATGGTGTGGGTTTGTTGATACGGATGCATTaGGGAGGAGGGGACCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: FRVSALGSRWGTIHGVGLLIRMH*GGGDQP Trigger: TGGCTGGTCCCCTCCTCCCAAATGCATCCGTATCAA...CAAACCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAGACCCGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| CDS-3UTR CAA 90 bp | TTCCTTTCGGGTCTCTGCTTTGGGGTCTCGCTGGGGTACCATCCATGGTGTGGGGCAGTTAGGAGGATATaGGATAAGAGCAACATGCTG | + |
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Preference number: 5 (lower is better) Translates to: FLSGLCFGVSLGYHPWCGAVRRI*DKSNML Trigger: CAGCATGTTGCTCTTATCCAATATCCTCCTAACTGC...CCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAGACCCGAAAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| CDS-3UTR CAA 90 bp | GGTCTCTGCTTTGGGGTCTCGCTGGGGTACCATCCATGGTGTGGGTTTGTCTCAAGACTCGTAAGCACATaGGTGGCTCAGACCAATTTC | + |
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Preference number: 5 (lower is better) Translates to: GLCFGVSLGYHPWCGFVSRLVST*VAQTNF Trigger: GAAATTGGTCTGAGCCACCAATGTGCTTACGAGTCT...TGAGACAAACCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| CDS-3UTR CAA 90 bp | TCCTTTCGGGTCTCTGCTTTGGGGTCTCGCTGGGGTACCATCCATGGTGTGGGTCAGTGGGTGTACACTTaGAAACAGTTGATCCAGTTA | + |
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Preference number: 5 (lower is better) Translates to: SFRVSALGSRWGTIHGVGQWVYT*KQLIQL Trigger: TAACTGGATCAACTGTTTCAAAGTGTACACCCACTG...ACCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAGACCCGAAAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| CDS CCA 90 bp | AGAGTCTCCATTCTCCACATAATGGAAAACACATTTCCTGACGCATaGGACTTCAGGCTCCCACCCTTGTGCTGTGCAACGAAGGTAGTC | + |
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Preference number: 5 (lower is better) Translates to: RVSILHIMENTFPDA*DFRLPPLCCATKVV Trigger: GACTACCTTCGTTGCACAGCACAAGGGTGGGAGCCTGAAGTCCCATGCGTCAGGAAATGTGTTTTCCATTATGTGGAGAATGGAGACTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094489.5 ENSMUST00000194186.6 ENSMUST00000239380.2 |
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| CDS-3UTR CAA 90 bp | TTTCGGGTCTCTGCTTTGGGGTCTCGCTGGGGTACCATCCATGGTGTGGGTTTGTCTCTGTACATGTCATaGTGTCTTGACCATTTTGAA | + |
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Preference number: 5 (lower is better) Translates to: FRVSALGSRWGTIHGVGLSLYMS*CLDHFE Trigger: TTCAAAATGGTCAAGACACAATGACATGTACAGAGA...CAAACCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAGACCCGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| CDS-3UTR CAA 90 bp | ATGGTGTGGGTTTGTCTCATTTCAAAGAGAGAGTCCAGGTCATCTCTCAGGATGGTTTCAAGGTACATCTaGGAACAGGGATCCAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: MVWVCLISKRESRSSLRMVSRYI*EQGSSQ Trigger: CTGGCTGGATCCCTGTTCCAAGATGTACCTTGAAAC...CATCCTGAGAGATGACCTGGACTCTCTCTTTGAAATGAGACAAACCCACACCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| CDS-3UTR CAA 90 bp | CTCTGCTTTGGGGTCTCGCTGGGGTACCATCCATGGTGTGGGTTTGTCTCATTTTACACTTTGAAACAGTaGATCCAGTTACAGGATAGA | + |
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Preference number: 5 (lower is better) Translates to: LCFGVSLGYHPWCGFVSFYTLKQ*IQLQDR Trigger: TCTATCCTGTAACTGGATCAACTGTTTCAAAGTGTA...AAATGAGACAAACCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| CDS-3UTR CAA 90 bp | CTCTGCTTTGGGGTCTCGCTGGGGTACCATCCATGGTGTGGGTTTGTCTCATTTTGTGTCTTGACCATTTaGAAGACTATAGCCATTGTA | + |
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Preference number: 5 (lower is better) Translates to: LCFGVSLGYHPWCGFVSFCVLTI*KTIAIV Trigger: TACAATGGCTATAGTCTTCAAAATGGTCAAGACACA...AAATGAGACAAACCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000194186.6 |
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| CDS TCA 90 bp | ATTCACATGGTTTCAAGGTACATCTTGGAACAGGGATCCAGCCAGTaGGTGTACACTTTGAAACAGCTGATCGGGTTGCAGGATAAAAGC | + |
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Preference number: 5 (lower is better) Translates to: IHMVSRYILEQGSSQ*VYTLKQLIGLQDKS Trigger: GCTTTTATCCTGCAACCCGATCAGCTGTTTCAAAGTGTACACTCACTGGCTGGATCCCTGTTCCAAGATGTACCTTGAAACCATGTGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239380.2 |
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| CDS CCA 90 bp | ATTCACATGGTTTCAAGGTACATCTTGGAACAGGGATCCAGCCAGTaGGTGTACACTTTGAAACAGTTGATCCAGTTACAGGATAGAAGC | + |
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Preference number: 5 (lower is better) Translates to: IHMVSRYILEQGSSQ*VYTLKQLIQLQDRS Trigger: GCTTCTATCCTGTAACTGGATCAACTGTTTCAAAGTGTACACCCACTGGCTGGATCCCTGTTCCAAGATGTACCTTGAAACCATGTGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094489.5 ENSMUST00000194186.6 |
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| CDS-3UTR CAA 90 bp | TTAATATGCCTCTTTACAGCAATAAAATCCTGCCTAAGACAATGCGCATTGCTTTTGATACGGATGCATTaGGGAGGAGGGGACCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: LICLFTAIKSCLRQCALLLIRMH*GGGDQP Trigger: TGGCTGGTCCCCTCCTCCCAAATGCATCCGTATCAA...AAGCAATGCGCATTGTCTTAGGCAGGATTTTATTGCTGTAAAGAGGCATATTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000239380.2 |
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| CDS-3UTR CAA 90 bp | TTAATATGCCTCTTTACAGCAATAAAATCCTGCCTAAGACAATGCGCATTGCTTGCAGTTAGGAGGATATaGGATAAGAGCAACATGCTG | + |
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Preference number: 5 (lower is better) Translates to: LICLFTAIKSCLRQCALLAVRRI*DKSNML Trigger: CAGCATGTTGCTCTTATCCAATATCCTCCTAACTGC...AAGCAATGCGCATTGTCTTAGGCAGGATTTTATTGCTGTAAAGAGGCATATTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239380.2 |
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| CDS-3UTR CAA 90 bp | TTAATATGCCTCTTTACAGCAATAAAATCCTGCCTAAGACAATGCGCATTGCTTATGCATGTAAGCACATaGGTGGCTCAGACCAATTTC | + |
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Preference number: 5 (lower is better) Translates to: LICLFTAIKSCLRQCALLMHVST*VAQTNF Trigger: GAAATTGGTCTGAGCCACCAATGTGCTTACATGCAT...AAGCAATGCGCATTGTCTTAGGCAGGATTTTATTGCTGTAAAGAGGCATATTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239380.2 |
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| CDS-3UTR CAA 90 bp | TTAATATGCCTCTTTACAGCAATAAAATCCTGCCTAAGACAATGCGCATTGCTTAAACAGCTGATCGGGTaGCAGGATAAAAGCCATTTT | + |
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Preference number: 5 (lower is better) Translates to: LICLFTAIKSCLRQCALLKQLIG*QDKSHF Trigger: AAAATGGCTTTTATCCTGCAACCCGATCAGCTGTTT...AAGCAATGCGCATTGTCTTAGGCAGGATTTTATTGCTGTAAAGAGGCATATTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239380.2 |
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| CDS-3UTR CAA 90 bp | TTAATATGCCTCTTTACAGCAATAAAATCCTGCCTAAGACAATGCGCATTGCTTTGTGTCTTGACCATTTaGAAGACTATAGCCATTGTA | + |
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Preference number: 5 (lower is better) Translates to: LICLFTAIKSCLRQCALLCVLTI*KTIAIV Trigger: TACAATGGCTATAGTCTTCAAAATGGTCAAGACACA...AAGCAATGCGCATTGTCTTAGGCAGGATTTTATTGCTGTAAAGAGGCATATTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239380.2 |
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| CDS-3UTR CAA 90 bp | TTAATATGCCTCTTTACAGCAATAAAATCCTGCCTAAGACAATGCGCATTGCTTTCTCTGTACATGTCATaGTGTCTTGACCATTTTGAA | + |
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Preference number: 5 (lower is better) Translates to: LICLFTAIKSCLRQCALLSLYMS*CLDHFE Trigger: TTCAAAATGGTCAAGACACAATGACATGTACAGAGA...AAGCAATGCGCATTGTCTTAGGCAGGATTTTATTGCTGTAAAGAGGCATATTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239380.2 |
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| CDS TCA 90 bp | TGCTTTCTGATATCCACGTTTACATTCAAATTCAATATCCTCCCCTaGATGGGCATAAATCTTTTCAGTGTGTCTCCATTTGAGAATTAT | + |
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Preference number: 5 (lower is better) Translates to: CFLISTFTFKFNILP*MGINLFSVSPFENY Trigger: ATAATTCTCAAATGGAGACACACTGAAAAGATTTATGCCCATTCAGGGGAGGATATTGAATTTGAATGTAAACGTGGATATCAGAAAGCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000094489.5 ENSMUST00000239380.2 |
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| CDS TCA 72 bp | GTTTCAAGGTACATCTTGGAACAGGGATCCAGCCAGTaGGTGTACACTTTGAAACAGCTGATCGGGTTGCAG | + |
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Preference number: 6 (lower is better) Translates to: VSRYILEQGSSQ*VYTLKQLIGLQ Trigger: CTGCAACCCGATCAGCTGTTTCAAAGTGTACACTCACTGGCTGGATCCCTGTTCCAAGATGTACCTTGAAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239380.2 |
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| CDS TCA 72 bp | GTCTCAGGCTCTCTTCATAATACAGACGTCCATATTTaGATTGTGGAAATTCACATGGTTTCAAGGTACATC | + |
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Preference number: 6 (lower is better) Translates to: VSGSLHNTDVHI*IVEIHMVSRYI Trigger: GATGTACCTTGAAACCATGTGAATTTCCACAATTCAAATATGGACGTCTGTATTATGAAGAGAGCCTGAGAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094489.5 ENSMUST00000194186.6 ENSMUST00000239380.2 |
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| CDS TCA 72 bp | CACTTTGTACGAAATGGCAGTGATCCTCTTGCTTTCTaGTATCCACGTTTACATTCAAATTCAATATCCTCC | + |
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Preference number: 6 (lower is better) Translates to: HFVRNGSDPLAF*YPRLHSNSISS Trigger: GGAGGATATTGAATTTGAATGTAAACGTGGATATCAGAAAGCAAGAGGATCACTGCCATTTCGTACAAAGTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094489.5 ENSMUST00000239380.2 |
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| CDS TCA 72 bp | ATATCCACGTTTACATTCAAATTCAATATCCTCCCCTaGATGGGCATAAATCTTTTCAGTGTGTCTCCATTT | + |
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Preference number: 6 (lower is better) Translates to: ISTFTFKFNILP*MGINLFSVSPF Trigger: AAATGGAGACACACTGAAAAGATTTATGCCCATTCAGGGGAGGATATTGAATTTGAATGTAAACGTGGATAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000094489.5 ENSMUST00000239380.2 |
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