Pregenerated sensors for CFHR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057037Ensembl transcript IDs: ENSMUST00000023965.8, ENSMUST00000161224.2
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TATTCATGTGCATTTCTAAGCAATAAAATCAGCAGGCAGTGTTGGTaGACGCCTTTAATCCCAGCACTTGGGAGGAAAAGTCAGGCCGAT | + |
|
Preference number: 1 (lower is better) Translates to: YSCAFLSNKISRQCW*TPLIPALGRKSQAD Trigger: ATCGGCCTGACTTTTCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCAACACTGCCTGCTGATTTTATTGCTTAGAAATGCACATGAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| 3UTR GCA 72 bp | GCATTTCTAAGCAATAAAATCAGCAGGCAGTGTTGGTaGACGCCTTTAATCCCAGCACTTGGGAGGAAAAGT | + |
|
Preference number: 3 (lower is better) Translates to: AFLSNKISRQCW*TPLIPALGRKS Trigger: ACTTTTCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCAACACTGCCTGCTGATTTTATTGCTTAGAAATGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| 3UTR CCA 72 bp | TGTGCATTTCTAAGCAATAAAATCAGCAGGCAGTGTTaGTGCACGCCTTTAATCCCAGCACTTGGGAGGAAA | + |
|
Preference number: 3 (lower is better) Translates to: CAFLSNKISRQC*CTPLIPALGRK Trigger: TTTCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCAACACTGCCTGCTGATTTTATTGCTTAGAAATGCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS-3UTR TCA 90 bp | TGTTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGAAAAGTCAGGCCGATTTCGAAAGAAGCATAGCCTaGGACACTTCGGAGTTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: CWCTPLIPALGRKSQADFERSIA*DTSELV Trigger: CACCAACTCCGAAGTGTCTCAGGCTATGCTTCTTTC...GAAATCGGCCTGACTTTTCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS-3UTR GCA 90 bp | TGTTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGAAAAGTCAGGCCGATTTCGGCTGTAGCCTTGATTaGAGACCACTTGTACAATGT | + |
|
Preference number: 4 (lower is better) Translates to: CWCTPLIPALGRKSQADFGCSLD*RPLVQC Trigger: ACATTGTACAAGTGGTCTGCAATCAAGGCTACAGCC...GAAATCGGCCTGACTTTTCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS-3UTR TCA 90 bp | TGTTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGAAAAGTCAGGCCGATTTCCCTTCTACATGGGTTTaGCCTGAAGATGTAGAATTA | + |
|
Preference number: 4 (lower is better) Translates to: CWCTPLIPALGRKSQADFPSTWV*PEDVEL Trigger: TAATTCTACATCTTCAGGTCAAACCCATGTAGAAGG...GAAATCGGCCTGACTTTTCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS-3UTR TCA 90 bp | TACAGAGTGAGTTCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACAAAAACCCTCTTCAGCACAGGTaGTGGTGCTCTGATTATTCT | + |
|
Preference number: 4 (lower is better) Translates to: YRVSSRATQRNPVLKNKNPLQHR*WCSDYS Trigger: AGAATAATCAGAGCACCATCACCTGTGCTGAAGAGG...GTTTTTGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGAACTCACTCTGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS-3UTR CCA 90 bp | TACAGAGTGAGTTCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACAAAAACATTTCCCTGTTGGATTaGTGGAAATGCATTTGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: YRVSSRATQRNPVLKNKNISLLD*WKCIWG Trigger: CCCCCAAATGCATTTCCACCAATCCAACAGGGAAAT...GTTTTTGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGAACTCACTCTGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS-3UTR TCA 90 bp | GTGATCTACAGAGTGAGTTCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACCTCAATATCCTCTCCTaGCTGAATATAAACCTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: VIYRVSSRATQRNPVLKNLNILS*LNINLF Trigger: GAAAAGGTTTATATTCAGTCAGGAGAGGATATTGAG...GTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGAACTCACTCTGTAGATCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS-3UTR CCA 90 bp | TGTGCATTTCTAAGCAATAAAATCAGCAGGCAGTGTTGGTGCACGCCTTTAATCATATATACAGGTTGGTaGCTCAGACCACTTTCCATT | + |
|
Preference number: 4 (lower is better) Translates to: CAFLSNKISRQCWCTPLIIYTGW*LRPLSI Trigger: AATGGAAAGTGGTCTGAGCCACCAACCTGTATATAT...GATTAAAGGCGTGCACCAACACTGCCTGCTGATTTTATTGCTTAGAAATGCACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS-3UTR CCA 90 bp | CACATGCTATTGTTTGGCACTGAAGCACTGATCAAACAATACATTTATTTTGTGATATATACAGGTTGGTaGCTCAGACCACTTTCCATT | + |
|
Preference number: 4 (lower is better) Translates to: HMLLFGTEALIKQYIYFVIYTGW*LRPLSI Trigger: AATGGAAAGTGGTCTGAGCCACCAACCTGTATATAT...CACAAAATAAATGTATTGTTTGATCAGTGCTTCAGTGCCAAACAATAGCATGTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161224.2 |
||
| CDS-3UTR CAA 90 bp | TGTTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGAAAAGTCAGGCCGATTTCGCCCACATTTCCCTGTaGGATTGGTGGAAATGCATT | + |
|
Preference number: 5 (lower is better) Translates to: CWCTPLIPALGRKSQADFAHISL*DWWKCI Trigger: AATGCATTTCCACCAATCCAACAGGGAAATGTGGGC...GAAATCGGCCTGACTTTTCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS-3UTR CAA 90 bp | TGTTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGAAAAGTCAGGCCGATTTCATGCAGATAAACAGGTaGGTGGCTCAGACCACTTTC | + |
|
Preference number: 5 (lower is better) Translates to: CWCTPLIPALGRKSQADFMQINR*VAQTTF Trigger: GAAAGTGGTCTGAGCCACCAACCTGTTTATCTGCAT...GAAATCGGCCTGACTTTTCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS-3UTR CAA 90 bp | TGTTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGAAAAGTCAGGCCGATTTCATAAACCTTTTCGCTTaGTCTCCATCTGAGAAGTAT | + |
|
Preference number: 5 (lower is better) Translates to: CWCTPLIPALGRKSQADFINLFA*SPSEKY Trigger: ATACTTCTCAGATGGAGACAAAGCGAAAAGGTTTAT...GAAATCGGCCTGACTTTTCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS-3UTR CAA 90 bp | TACAGAGTGAGTTCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACAAAAACCATTTCCCTGTTGGATaGGTGGAAATGCATTTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: YRVSSRATQRNPVLKNKNHFPVG*VEMHLG Trigger: CCCCAAATGCATTTCCACCAATCCAACAGGGAAATG...GTTTTTGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGAACTCACTCTGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS-3UTR CAA 90 bp | GTGATCTACAGAGTGAGTTCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACGAGTCCAGAAGGAATTaGATGGAGATGCAAAATTAT | + |
|
Preference number: 5 (lower is better) Translates to: VIYRVSSRATQRNPVLKNESRRN*MEMQNY Trigger: ATAATTTTGCATCTCCATCAAATTCCTTCTGGACTC...GTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGAACTCACTCTGTAGATCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS-3UTR CAA 90 bp | CACATGCTATTGTTTGGCACTGAAGCACTGATCAAACAATACATTTATTTTGTGACTTACATAAACAGGTaGGTGGCTCAGACCACTTTC | + |
|
Preference number: 5 (lower is better) Translates to: HMLLFGTEALIKQYIYFVTYINR*VAQTTF Trigger: GAAAGTGGTCTGAGCCACCAACCTGTTTATGTAAGT...CACAAAATAAATGTATTGTTTGATCAGTGCTTCAGTGCCAAACAATAGCATGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161224.2 |
||
| CDS CAA 90 bp | GGTGGAGGGGGCCCACATTTCCCTGTTGGATTGGTGGAAATGCATTaGGGGGTAATGGACCAGCCCTCTTCAGCACAGGTGATGGTGCTC | + |
|
Preference number: 6 (lower is better) Translates to: GGGGPHFPVGLVEMH*GVMDQPSSAQVMVL Trigger: GAGCACCATCACCTGTGCTGAAGAGGGCTGGTCCATTACCCCCAAATGCATTTCCACCAATCCAACAGGGAAATGTGGGCCCCCTCCACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS CAA 72 bp | GGCCCACATTTCCCTGTTGGATTGGTGGAAATGCATTaGGGGGTAATGGACCAGCCCTCTTCAGCACAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: GPHFPVGLVEMH*GVMDQPSSAQV Trigger: CACCTGTGCTGAAGAGGGCTGGTCCATTACCCCCAAATGCATTTCCACCAATCCAACAGGGAAATGTGGGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS CAA 90 bp | TTCAGCACAGGTGATGGTGCTCTGATTATTCTGAAGGCTGTAGCCTaGATTGCAGACCACTTGTACAATGTCACCTTCTACATGGGTTTG | + |
|
Preference number: 6 (lower is better) Translates to: FSTGDGALIILKAVA*IADHLYNVTFYMGL Trigger: CAAACCCATGTAGAAGGTGACATTGTACAAGTGGTCTGCAATCAAGGCTACAGCCTTCAGAATAATCAGAGCACCATCACCTGTGCTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS GCA 72 bp | TGGTGCTCTGATTATTCTGAAGGCTGTAGCCTTGATTaGAGACCACTTGTACAATGTCACCTTCTACATGGG | + |
|
Preference number: 6 (lower is better) Translates to: WCSDYSEGCSLD*RPLVQCHLLHG Trigger: CCCATGTAGAAGGTGACATTGTACAAGTGGTCTGCAATCAAGGCTACAGCCTTCAGAATAATCAGAGCACCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS CAA 72 bp | GGTGATGGTGCTCTGATTATTCTGAAGGCTGTAGCCTaGATTGCAGACCACTTGTACAATGTCACCTTCTAC | + |
|
Preference number: 6 (lower is better) Translates to: GDGALIILKAVA*IADHLYNVTFY Trigger: GTAGAAGGTGACATTGTACAAGTGGTCTGCAATCAAGGCTACAGCCTTCAGAATAATCAGAGCACCATCACC 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS CAA 72 bp | CTTATTTTTGGAAAATCACAAAGGCTCACTTCACCTTaGGCAGTAGAGAACCATGAGGTTAGGAGAACAATA | + |
|
Preference number: 6 (lower is better) Translates to: LIFGKSQRLTSP*AVENHEVRRTI Trigger: TATTGTTCTCCTAACCTCATGGTTCTCTACTGCCAAAGGTGAAGTGAGCCTTTGTGATTTTCCAAAAATAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||
| CDS TCA 72 bp | ATATCTAGGTTTACATCCAAACTCAATATCCTCTCCTaGCTGAATATAAACCTTTTCGCTTTGTCTCCATCT | + |
|
Preference number: 6 (lower is better) Translates to: ISRFTSKLNILS*LNINLFALSPS Trigger: AGATGGAGACAAAGCGAAAAGGTTTATATTCAGTCAGGAGAGGATATTGAGTTTGGATGTAAACCTAGATAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023965.8 |
||