Pregenerated sensors for CFD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061780Ensembl transcript IDs: ENSMUST00000061653.9, ENSMUST00000217837.2
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | ATTTATTGTGAGCCACGTGTCTCTTGTTTCCCTGAGCCACGTGTCTCTGGTGTCGGGCCGAGCATGGGCTaGGGCCTCCTGGCCACCCAG | + |
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Preference number: 4 (lower is better) Translates to: IYCEPRVSCFPEPRVSGVGPSMG*GLLATQ Trigger: CTGGGTGGCCAGGAGGCCGCAGCCCATGCTCGGCCC...GACACCAGAGACACGTGGCTCAGGGAAACAAGAGACACGTGGCTCACAATAAAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061653.9 |
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| CDS-3UTR GCA 90 bp | TTTATTGTGAGCCACGTGTCTCTTGTTTCCCTGAGCCACGTGTCTCTGGTGTCCGCTCGTCCAGCAGGGTaGCACCGCACACGTGTGTGC | + |
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Preference number: 4 (lower is better) Translates to: FIVSHVSLVSLSHVSLVSARPAG*HRTRVC Trigger: GCACACACGTGTGCGGTGGCACCCTGCTGGACGAGC...GGACACCAGAGACACGTGGCTCAGGGAAACAAGAGACACGTGGCTCACAATAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061653.9 |
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| CDS-3UTR TCA 90 bp | TTTATTGTGAGCCACGTGTCTCTTGTTTCCCTGAGCCACGTGTCTCTGGTGTCCTGCGTCCTGCATGGGTaGCCACACCCCAACCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: FIVSHVSLVSLSHVSLVSCVLHG*PHPNQP Trigger: TGGCTGGTTGGGGTGTGGTCACCCATGCAGGACGCA...GGACACCAGAGACACGTGGCTCAGGGAAACAAGAGACACGTGGCTCACAATAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061653.9 |
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| CDS-3UTR GCA 90 bp | TTTATTGTGAGCCACGTGTCTCTTGTTTCCCTGAGCCACGTGTCTCTGGTGTCCATCAGGCCTGCGTCCTaGATGGGTGACCACACCCCA | + |
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Preference number: 4 (lower is better) Translates to: FIVSHVSLVSLSHVSLVSIRPAS*MGDHTP Trigger: TGGGGTGTGGTCACCCATGCAGGACGCAGGCCTGAT...GGACACCAGAGACACGTGGCTCAGGGAAACAAGAGACACGTGGCTCACAATAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061653.9 |
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| CDS-3UTR GCA 90 bp | CAGATGCATGCATTTATTGTGAGCCACGTGTCTCTTGTTTCCCTGAGCCACGTGCGCACACTAGAGGGCTaGCGGAGTCTCCCCTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: QMHAFIVSHVSLVSLSHVRTLEG*RSLPCK Trigger: CTTGCAGGGGAGACTCCGGCAGCCCTCTAGTGTGCG...CACGTGGCTCAGGGAAACAAGAGACACGTGGCTCACAATAAATGCATGCATCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061653.9 |
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| CDS-3UTR CCA 90 bp | CAGATGCATGCATTTATTGTGAGCCACGTGTCTCTTGTTTCCCTGAGCCACGTGGGCCTGCGTCCTGCATaGGTGACCACACCCCAACCA | + |
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Preference number: 4 (lower is better) Translates to: QMHAFIVSHVSLVSLSHVGLRPA*VTTPQP Trigger: TGGTTGGGGTGTGGTCACCCATGCAGGACGCAGGCC...CACGTGGCTCAGGGAAACAAGAGACACGTGGCTCACAATAAATGCATGCATCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061653.9 |
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| CDS-3UTR GCA 90 bp | ATTTATTGTGAGCCACGTGTCTCTTGTTTCCCTGAGCCACGTGTCTCTGGTGTCAGACGCCCGGCTTTTTaGCATTGCCACAGACGCGAG | + |
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Preference number: 4 (lower is better) Translates to: IYCEPRVSCFPEPRVSGVRRPAF*HCHRRE Trigger: CTCGCGTCTGTGGCAATGGCAAAAAGCCGGGCGTCT...GACACCAGAGACACGTGGCTCAGGGAAACAAGAGACACGTGGCTCACAATAAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061653.9 |
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| CDS-3UTR GCA 90 bp | TCAGATGCATGCATTTATTGTGAGCCACGTGTCTCTTGTTTCCCTGAGCCACGTTCCATCCATGCAGTGTaGAGCACTGAGCACCCACTG | + |
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Preference number: 4 (lower is better) Translates to: SDACIYCEPRVSCFPEPRSIHAV*STEHPL Trigger: CAGTGGGTGCTCAGTGCTGCACACTGCATGGATGGA...ACGTGGCTCAGGGAAACAAGAGACACGTGGCTCACAATAAATGCATGCATCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061653.9 |
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| CDS-3UTR TCA 90 bp | TCAGATGCATGCATTTATTGTGAGCCACGTGTCTCTTGTTTCCCTGAGCCACGTATTGACACTCTGAGTTaGTGCAGGACATCAGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: SDACIYCEPRVSCFPEPRIDTLS*CRTSGL Trigger: CAGGCCTGATGTCCTGCATCAACTCAGAGTGTCAAT...ACGTGGCTCAGGGAAACAAGAGACACGTGGCTCACAATAAATGCATGCATCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061653.9 |
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| CDS-3UTR TCA 90 bp | ATTTATTGTGAGCCACGTGTCTCTTGTTTCCCTGAGCCACGTGTCTCTGGTGTCTGTCCGGTTCATGATTaGCACTCTGAGTTGATGCAG | + |
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Preference number: 4 (lower is better) Translates to: IYCEPRVSCFPEPRVSGVCPVHD*HSELMQ Trigger: CTGCATCAACTCAGAGTGTCAATCATGAACCGGACA...GACACCAGAGACACGTGGCTCAGGGAAACAAGAGACACGTGGCTCACAATAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061653.9 |
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| CDS GCA 90 bp | GGCTGCGGCCTCCTGGCCACCCAGAATCCGGCCTCGGGGCTGTGCTaGACATACAGCCGCTCCCAGGATCACCAGAGCCACGAAGTACAC | + |
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Preference number: 5 (lower is better) Translates to: GCGLLATQNPASGLC*TYSRSQDHQSHEVH Trigger: GTGTACTTCGTGGCTCTGGTGATCCTGGGAGCGGCTGTATGTGCAGCACAGCCCCGAGGCCGGATTCTGGGTGGCCAGGAGGCCGCAGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061653.9 |
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| CDS GCA 90 bp | ATGGGCTGCGGCCTCCTGGCCACCCAGAATCCGGCCTCGGGGCTGTaGTGCACATACAGCCGCTCCCAGGATCACCAGAGCCACGAAGTA | + |
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Preference number: 5 (lower is better) Translates to: MGCGLLATQNPASGL*CTYSRSQDHQSHEV Trigger: TACTTCGTGGCTCTGGTGATCCTGGGAGCGGCTGTATGTGCAGCACAGCCCCGAGGCCGGATTCTGGGTGGCCAGGAGGCCGCAGCCCAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061653.9 |
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| CDS GCA 90 bp | ATGGGCTGCGGCCTCCTGGCCACCCAGAATCCGGCCTCGGGGCTGTaGACATACAGCCGCTCCCAGGATCACCAGAGCCACGAAGTACAC | + |
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Preference number: 5 (lower is better) Translates to: MGCGLLATQNPASGL*TYSRSQDHQSHEVH Trigger: GTGTACTTCGTGGCTCTGGTGATCCTGGGAGCGGCTGTATGTGCACAGCCCCGAGGCCGGATTCTGGGTGGCCAGGAGGCCGCAGCCCAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217837.2 |
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| CDS TCA 90 bp | GTGCGCAGATTGCAGGTTGTCCGGTTCATGATTGACACTCTGAGTTaGTGCAGGACATCAGGCCTGCGTCCTGCATGGGTGACCACACCC | + |
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Preference number: 5 (lower is better) Translates to: VRRLQVVRFMIDTLS*CRTSGLRPAWVTTP Trigger: GGGTGTGGTCACCCATGCAGGACGCAGGCCTGATGTCCTGCATCAACTCAGAGTGTCAATCATGAACCGGACAACCTGCAATCTGCGCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061653.9 ENSMUST00000217837.2 |
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| CDS CAA 90 bp | CTGCTCGTCCAGCAGGGTGCCACCGCACACGTGTGTGCCGTTCACTaGCACGGAAGCCATGTAGGGCCGAGCATGGGCTGCGGCCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: LLVQQGATAHVCAVH*HGSHVGPSMGCGLL Trigger: CAGGAGGCCGCAGCCCATGCTCGGCCCTACATGGCTTCCGTGCAAGTGAACGGCACACACGTGTGCGGTGGCACCCTGCTGGACGAGCAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061653.9 ENSMUST00000217837.2 |
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| CDS CAA 72 bp | CAGCAGGGTGCCACCGCACACGTGTGTGCCGTTCACTaGCACGGAAGCCATGTAGGGCCGAGCATGGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: QQGATAHVCAVH*HGSHVGPSMGC Trigger: GCAGCCCATGCTCGGCCCTACATGGCTTCCGTGCAAGTGAACGGCACACACGTGTGCGGTGGCACCCTGCTG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061653.9 ENSMUST00000217837.2 |
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| CDS TCA 72 bp | GTTGATGCAGGACATCAGGCCTGCGTCCTGCATGGGTaGCCACACCCCAACCAGCCACGTCGCAGAGCGTGC | + |
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Preference number: 6 (lower is better) Translates to: VDAGHQACVLHG*PHPNQPRRRAC Trigger: GCACGCTCTGCGACGTGGCTGGTTGGGGTGTGGTCACCCATGCAGGACGCAGGCCTGATGTCCTGCATCAAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061653.9 ENSMUST00000217837.2 |
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| CDS GCA 72 bp | ACTGCTCGTCCAGCAGGGTGCCACCGCACACGTGTGTaGCGTTCACTTGCACGGAAGCCATGTAGGGCCGAG | + |
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Preference number: 6 (lower is better) Translates to: TARPAGCHRTRV*RSLARKPCRAE Trigger: CTCGGCCCTACATGGCTTCCGTGCAAGTGAACGGCACACACGTGTGCGGTGGCACCCTGCTGGACGAGCAGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061653.9 ENSMUST00000217837.2 |
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| CDS GCA 72 bp | CACTCTGAGTTGATGCAGGACATCAGGCCTGCGTCCTaGATGGGTGACCACACCCCAACCAGCCACGTCGCA | + |
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Preference number: 6 (lower is better) Translates to: HSELMQDIRPAS*MGDHTPTSHVA Trigger: TGCGACGTGGCTGGTTGGGGTGTGGTCACCCATGCAGGACGCAGGCCTGATGTCCTGCATCAACTCAGAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061653.9 ENSMUST00000217837.2 |
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| CDS CAA 72 bp | CCAGCCACGTCGCAGAGCGTGCCGGGTTCCACTTCTTaGTCCTCGTATTGCAAGGGTAGGGGTCTCACGTGG | + |
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Preference number: 6 (lower is better) Translates to: PATSQSVPGSTS*SSYCKGRGLTW Trigger: CCACGTGAGACCCCTACCCTTGCAATACGAGGACAAAGAAGTGGAACCCGGCACGCTCTGCGACGTGGCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061653.9 ENSMUST00000217837.2 |
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| CDS CAA 72 bp | GGGCTGCCGGAGTCTCCCCTGCAAGTGTCCCTGCGGTaGCTCTCTGCACACATCATGTTAATGGTGACTACC | + |
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Preference number: 6 (lower is better) Translates to: GLPESPLQVSLR*LSAHIMLMVTT Trigger: GGTAGTCACCATTAACATGATGTGTGCAGAGAGCAACCGCAGGGACACTTGCAGGGGAGACTCCGGCAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061653.9 ENSMUST00000217837.2 |
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| CDS TCA 72 bp | TTGCAGGTTGTCCGGTTCATGATTGACACTCTGAGTTaGTGCAGGACATCAGGCCTGCGTCCTGCATGGGTG | + |
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Preference number: 6 (lower is better) Translates to: LQVVRFMIDTLS*CRTSGLRPAWV Trigger: CACCCATGCAGGACGCAGGCCTGATGTCCTGCATCAACTCAGAGTGTCAATCATGAACCGGACAACCTGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061653.9 ENSMUST00000217837.2 |
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