RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CFC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026124

Ensembl transcript IDs: ENSMUST00000027298.5

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TATTCCAGTGAATCTGTTATTTACAGGACACAACACCAAGTCAGATaGCCACCACCCAGCTTTCTTGCTGGCACACTGTGGTGTAATCAA +
Preference number: 1 (lower is better)
Translates to: YSSESVIYRTQHQVR*PPPSFLAGTLWCNQ
Trigger: TTGATTACACCACAGTGTGCCAGCAAGAAAGCTGGGTGGTGGGCATCTGACTTGGTGTTGTGTCCTGTAAATAACAGATTCACTGGAATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
3UTR-3UTR TCA 90 bp TACAGGACACAACACCAAGTCAGATGCCCACCACCCAGCTTTCTTGCTGGCACATGGTGTAATCAAGGGTaGCAGCTCAGGAGGAGAGTC +
Preference number: 2 (lower is better)
Translates to: YRTQHQVRCPPPSFLAGTWCNQG*QLRRRV
Trigger: GACTCTCCTCCTGAGCTGTCACCCTTGATTACACCA...TGTGCCAGCAAGAAAGCTGGGTGGTGGGCATCTGACTTGGTGTTGTGTCCTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
3UTR GCA 72 bp GAATCTGTTATTTACAGGACACAACACCAAGTCAGATaGCCACCACCCAGCTTTCTTGCTGGCACACTGTGG +
Preference number: 3 (lower is better)
Translates to: ESVIYRTQHQVR*PPPSFLAGTLW
Trigger: CCACAGTGTGCCAGCAAGAAAGCTGGGTGGTGGGCATCTGACTTGGTGTTGTGTCCTGTAAATAACAGATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS-3UTR CCA 90 bp TACAGGACACAACACCAAGTCAGATGCCCACCACCCAGCTTTCTTGCTGGCACACGTCCCGGGGATCACTaGAGAGAGGATATTGCTGAC +
Preference number: 4 (lower is better)
Translates to: YRTQHQVRCPPPSFLAGTRPGDH*REDIAD
Trigger: GTCAGCAATATCCTCTCTCCAGTGATCCCCGGGACG...TGTGCCAGCAAGAAAGCTGGGTGGTGGGCATCTGACTTGGTGTTGTGTCCTGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
3UTR CAA 72 bp CACAACACCAAGTCAGATGCCCACCACCCAGCTTTCTaGCTGGCACACTGTGGTGTAATCAAGGGTGACAGC +
Preference number: 4 (lower is better)
Translates to: HNTKSDAHHPAF*LAHCGVIKGDS
Trigger: GCTGTCACCCTTGATTACACCACAGTGTGCCAGCAAGAAAGCTGGGTGGTGGGCATCTGACTTGGTGTTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS-3UTR TCA 90 bp TACAGGACACAACACCAAGTCAGATGCCCACCACCCAGCTTTCTTGCTGGCACAGAGAGAGGATATTGCTaGCTTCTCTGGCACCATCTC +
Preference number: 4 (lower is better)
Translates to: YRTQHQVRCPPPSFLAGTERGYC*LLWHHL
Trigger: GAGATGGTGCCAGAGAAGTCAGCAATATCCTCTCTC...TGTGCCAGCAAGAAAGCTGGGTGGTGGGCATCTGACTTGGTGTTGTGTCCTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS-3UTR GCA 90 bp CAAGTCAGATGCCCACCACCCAGCTTTCTTGCTGGCACACTGTGGTGTAATCAAGGAGGAGGCTTGGGATaGTGCATTCTCTTGATCCTC +
Preference number: 4 (lower is better)
Translates to: QVRCPPPSFLAGTLWCNQGGGLG*CILLIL
Trigger: GAGGATCAAGAGAATGCAGCATCCCAAGCCTCCTCC...TTGATTACACCACAGTGTGCCAGCAAGAAAGCTGGGTGGTGGGCATCTGACTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS-3UTR CCA 90 bp AAGTCAGATGCCCACCACCCAGCTTTCTTGCTGGCACACTGTGGTGTAATCAAGTCTCTCCCAAAGTGCTaGAGTCAGGAAGGGAATCCC +
Preference number: 4 (lower is better)
Translates to: KSDAHHPAFLLAHCGVIKSLPKC*SQEGNP
Trigger: GGGATTCCCTTCCTGACTCCAGCACTTTGGGAGAGA...CTTGATTACACCACAGTGTGCCAGCAAGAAAGCTGGGTGGTGGGCATCTGACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS-3UTR GCA 90 bp TACAGGACACAACACCAAGTCAGATGCCCACCACCCAGCTTTCTTGCTGGCACAGAATGTCATTCTTTCTaGTGGAATTACTCAGAGTTC +
Preference number: 4 (lower is better)
Translates to: YRTQHQVRCPPPSFLAGTECHSF*WNYSEF
Trigger: GAACTCTGAGTAATTCCAGCAGAAAGAATGACATTC...TGTGCCAGCAAGAAAGCTGGGTGGTGGGCATCTGACTTGGTGTTGTGTCCTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS-3UTR GCA 90 bp TTAAGCCTCTTTATTGTACAGCATGAGAATCCAGCATATTCCAGTGAATCTGTTCATAGGCGGCAGCTGTaGAGGGTCCAAGCTCCATGC +
Preference number: 4 (lower is better)
Translates to: LSLFIVQHENPAYSSESVHRRQL*RVQAPC
Trigger: GCATGGAGCTTGGACCCTGCACAGCTGCCGCCTATG...AACAGATTCACTGGAATATGCTGGATTCTCATGCTGTACAATAAAGAGGCTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS-3UTR GCA 90 bp TTAAGCCTCTTTATTGTACAGCATGAGAATCCAGCATATTCCAGTGAATCTGTTACAGGGCTGAGAAGATaGACCTGCATAGGCGGCAGC +
Preference number: 4 (lower is better)
Translates to: LSLFIVQHENPAYSSESVTGLRR*TCIGGS
Trigger: GCTGCCGCCTATGCAGGTGCATCTTCTCAGCCCTGT...AACAGATTCACTGGAATATGCTGGATTCTCATGCTGTACAATAAAGAGGCTTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS-3UTR CCA 90 bp AAGTCAGATGCCCACCACCCAGCTTTCTTGCTGGCACACTGTGGTGTAATCAAGTGTCATTCTTTCTGCTaGAATTACTCAGAGTTCTGT +
Preference number: 4 (lower is better)
Translates to: KSDAHHPAFLLAHCGVIKCHSFC*NYSEFC
Trigger: ACAGAACTCTGAGTAATTCCAGCAGAAAGAATGACA...CTTGATTACACCACAGTGTGCCAGCAAGAAAGCTGGGTGGTGGGCATCTGACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS-3UTR GCA 90 bp TTAAGCCTCTTTATTGTACAGCATGAGAATCCAGCATATTCCAGTGAATCTGTTCACTCTCTCCCAAAGTaGTGGAGTCAGGAAGGGAAT +
Preference number: 4 (lower is better)
Translates to: LSLFIVQHENPAYSSESVHSLPK*WSQEGN
Trigger: ATTCCCTTCCTGACTCCAGCACTTTGGGAGAGAGTG...AACAGATTCACTGGAATATGCTGGATTCTCATGCTGTACAATAAAGAGGCTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS-3UTR TCA 90 bp TTAAGCCTCTTTATTGTACAGCATGAGAATCCAGCATATTCCAGTGAATCTGTTGATGCATTTTCAAACTaGTACCCTGGGTTGGTGAGT +
Preference number: 4 (lower is better)
Translates to: LSLFIVQHENPAYSSESVDAFSN*YPGLVS
Trigger: ACTCACCAACCCAGGGTATCAGTTTGAAAATGCATC...AACAGATTCACTGGAATATGCTGGATTCTCATGCTGTACAATAAAGAGGCTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS-3UTR TCA 90 bp TTAAGCCTCTTTATTGTACAGCATGAGAATCCAGCATATTCCAGTGAATCTGTTAACAGAGGCCTGGCTTaGTGCATTTTCAAACTGATA +
Preference number: 4 (lower is better)
Translates to: LSLFIVQHENPAYSSESVNRGLA*CIFKLI
Trigger: TATCAGTTTGAAAATGCATCAAGCCAGGCCTCTGTT...AACAGATTCACTGGAATATGCTGGATTCTCATGCTGTACAATAAAGAGGCTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS CCA 90 bp TGTGGCAACAGCGGGATACAGGGACTGCACTCTCTCCCAAAGTGCTaGAGTCAGGAAGGGAATCCCATAGGCGCGCCCCCTCCGGAATGT +
Preference number: 5 (lower is better)
Translates to: CGNSGIQGLHSLPKC*SQEGNPIGAPPPEC
Trigger: ACATTCCGGAGGGGGCGCGCCTATGGGATTCCCTTCCTGACTCCAGCACTTTGGGAGAGAGTGCAGTCCCTGTATCCCGCTGTTGCCACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS-3UTR CAA 90 bp TACAGGACACAACACCAAGTCAGATGCCCACCACCCAGCTTTCTTGCTGGCACAACACAGGTGCCGCCATaGTGGCAACAGCGGGATACA +
Preference number: 5 (lower is better)
Translates to: YRTQHQVRCPPPSFLAGTTQVPP*WQQRDT
Trigger: TGTATCCCGCTGTTGCCACAATGGCGGCACCTGTGT...TGTGCCAGCAAGAAAGCTGGGTGGTGGGCATCTGACTTGGTGTTGTGTCCTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS-3UTR CAA 90 bp TACAGGACACAACACCAAGTCAGATGCCCACCACCCAGCTTTCTTGCTGGCACACCAGCAGGAGGAGGCTaGGGATGCTGCATTCTCTTG +
Preference number: 5 (lower is better)
Translates to: YRTQHQVRCPPPSFLAGTPAGGG*GCCILL
Trigger: CAAGAGAATGCAGCATCCCAAGCCTCCTCCTGCTGG...TGTGCCAGCAAGAAAGCTGGGTGGTGGGCATCTGACTTGGTGTTGTGTCCTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS TCA 90 bp CCGATGAGCTGCAGCGCGACAGTCACCAAAAACAGAGGCCTGGCTTaGTGCATTTTCAAACTGATACCCTGGGTTGGTGAGTTCGCTCTC +
Preference number: 5 (lower is better)
Translates to: PMSCSATVTKNRGLA*CIFKLIPWVGEFAL
Trigger: GAGAGCGAACTCACCAACCCAGGGTATCAGTTTGAAAATGCATCAAGCCAGGCCTCTGTTTTTGGTGACTGTCGCGCTGCAGCTCATCGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS CCA 90 bp CTTGATCCTCTGGCGCCTGAAGAAAGGAAGCTTTTCAGGTCACAGTaGCTGAACGTTTGGTGTGGGAGGCAGTACAGGGCTGAGAAGATG +
Preference number: 5 (lower is better)
Translates to: LDPLAPEERKLFRSQ*LNVWCGRQYRAEKM
Trigger: CATCTTCTCAGCCCTGTACTGCCTCCCACACCAAACGTTCAGCCACTGTGACCTGAAAAGCTTCCTTTCTTCAGGCGCCAGAGGATCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS-3UTR CAA 90 bp CAAGTCAGATGCCCACCACCCAGCTTTCTTGCTGGCACACTGTGGTGTAATCAAAAACAGAGGCCTGGCTaGATGCATTTTCAAACTGAT +
Preference number: 5 (lower is better)
Translates to: QVRCPPPSFLAGTLWCNQKQRPG*MHFQTD
Trigger: ATCAGTTTGAAAATGCATCAAGCCAGGCCTCTGTTT...TTGATTACACCACAGTGTGCCAGCAAGAAAGCTGGGTGGTGGGCATCTGACTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS-3UTR CAA 90 bp TTAAGCCTCTTTATTGTACAGCATGAGAATCCAGCATATTCCAGTGAATCTGTTACTGGAGAGAGGATATaGCTGACTTCTCTGGCACCA +
Preference number: 5 (lower is better)
Translates to: LSLFIVQHENPAYSSESVTGERI*LTSLAP
Trigger: TGGTGCCAGAGAAGTCAGCAATATCCTCTCTCCAGT...AACAGATTCACTGGAATATGCTGGATTCTCATGCTGTACAATAAAGAGGCTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS GCA 72 bp AACAGCGGGATACAGGGACTGCACTCTCTCCCAAAGTaGTGGAGTCAGGAAGGGAATCCCATAGGCGCGCCC +
Preference number: 6 (lower is better)
Translates to: NSGIQGLHSLPK*WSQEGNPIGAP
Trigger: GGGCGCGCCTATGGGATTCCCTTCCTGACTCCAGCACTTTGGGAGAGAGTGCAGTCCCTGTATCCCGCTGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS GCA 72 bp ACGTTTGGTGTGGGAGGCAGTACAGGGCTGAGAAGATaGACCTGCATAGGCGGCAGCTGTGCAGGGTCCAAG +
Preference number: 6 (lower is better)
Translates to: TFGVGGSTGLRR*TCIGGSCAGSK
Trigger: CTTGGACCCTGCACAGCTGCCGCCTATGCAGGTGCATCTTCTCAGCCCTGTACTGCCTCCCACACCAAACGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS GCA 72 bp GGAGGCAGAGCACCAGCAGGAGGAGGCTTGGGATGCTaGATTCTCTTGATCCTCTGGCGCCTGAAGAAAGGA +
Preference number: 6 (lower is better)
Translates to: GGRAPAGGGLGC*ILLILWRLKKG
Trigger: TCCTTTCTTCAGGCGCCAGAGGATCAAGAGAATGCAGCATCCCAAGCCTCCTCCTGCTGGTGCTCTGCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS CAA 90 bp GGAGGCAGAGCACCAGCAGGAGGAGGCTTGGGATGCTGCATTCTCTaGATCCTCTGGCGCCTGAAGAAAGGAAGCTTTTCAGGTCACAGT +
Preference number: 6 (lower is better)
Translates to: GGRAPAGGGLGCCIL*ILWRLKKGSFSGHS
Trigger: ACTGTGACCTGAAAAGCTTCCTTTCTTCAGGCGCCAGAGGATCAAGAGAATGCAGCATCCCAAGCCTCCTCCTGCTGGTGCTCTGCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS GCA 72 bp CCCATAGGCGCGCCCCCTCCGGAATGTCATTCTTTCTaGTGGAATTACTCAGAGTTCTGTCCAGTGTCGTCC +
Preference number: 6 (lower is better)
Translates to: PIGAPPPECHSF*WNYSEFCPVSS
Trigger: GGACGACACTGGACAGAACTCTGAGTAATTCCAGCAGAAAGAATGACATTCCGGAGGGGGCGCGCCTATGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS CCA 72 bp ATAGGCGCGCCCCCTCCGGAATGTCATTCTTTCTGCTaGAATTACTCAGAGTTCTGTCCAGTGTCGTCCCGG +
Preference number: 6 (lower is better)
Translates to: IGAPPPECHSFC*NYSEFCPVSSR
Trigger: CCGGGACGACACTGGACAGAACTCTGAGTAATTCCAGCAGAAAGAATGACATTCCGGAGGGGGCGCGCCTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS CCA 72 bp CTGGCGCCTGAAGAAAGGAAGCTTTTCAGGTCACAGTaGCTGAACGTTTGGTGTGGGAGGCAGTACAGGGCT +
Preference number: 6 (lower is better)
Translates to: LAPEERKLFRSQ*LNVWCGRQYRA
Trigger: AGCCCTGTACTGCCTCCCACACCAAACGTTCAGCCACTGTGACCTGAAAAGCTTCCTTTCTTCAGGCGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS TCA 72 bp CGCCTGAAGAAAGGAAGCTTTTCAGGTCACAGTGGCTaGACGTTTGGTGTGGGAGGCAGTACAGGGCTGAGA +
Preference number: 6 (lower is better)
Translates to: RLKKGSFSGHSG*TFGVGGSTGLR
Trigger: TCTCAGCCCTGTACTGCCTCCCACACCAAACGTTCAGCCACTGTGACCTGAAAAGCTTCCTTTCTTCAGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS CAA 72 bp GCACCAGCAGGAGGAGGCTTGGGATGCTGCATTCTCTaGATCCTCTGGCGCCTGAAGAAAGGAAGCTTTTCA +
Preference number: 6 (lower is better)
Translates to: APAGGGLGCCIL*ILWRLKKGSFS
Trigger: TGAAAAGCTTCCTTTCTTCAGGCGCCAGAGGATCAAGAGAATGCAGCATCCCAAGCCTCCTCCTGCTGGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS CCA 72 bp GAAAGGAAGCTTTTCAGGTCACAGTGGCTGAACGTTTaGTGTGGGAGGCAGTACAGGGCTGAGAAGATGCAC +
Preference number: 6 (lower is better)
Translates to: ERKLFRSQWLNV*CGRQYRAEKMH
Trigger: GTGCATCTTCTCAGCCCTGTACTGCCTCCCACACCAAACGTTCAGCCACTGTGACCTGAAAAGCTTCCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5
CDS CCA 72 bp GGAGGAGGCTTGGGATGCTGCATTCTCTTGATCCTCTaGCGCCTGAAGAAAGGAAGCTTTTCAGGTCACAGT +
Preference number: 6 (lower is better)
Translates to: GGGLGCCILLIL*RLKKGSFSGHS
Trigger: ACTGTGACCTGAAAAGCTTCCTTTCTTCAGGCGCCAGAGGATCAAGAGAATGCAGCATCCCAAGCCTCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027298.5