RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CFAP97D2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090336

Ensembl transcript IDs: ENSMUST00000166277.5, ENSMUST00000214337.2

Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCCACCCCACCCCAAGGAGACACAGGAAGGCCTCATCGGAGCATCTaGGCCCTGGTCTCCTTTCAGTGGATGGGTTCTGACCCTCACCCC +
Preference number: 1 (lower is better)
Translates to: PTPPQGDTGRPHRSI*ALVSFQWMGSDPHP
Trigger: GGGGTGAGGGTCAGAACCCATCCACTGAAAGGAGACCAGGGCCCAGATGCTCCGATGAGGCCTTCCTGTGTCTCCTTGGGGTGGGGTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166277.5
3UTR CCA 90 bp ACAGGAAGGCCTCATCGGAGCATCTGGGCCCTGGTCTCCTTTCAGTaGATGGGTTCTGACCCTCACCCCTTTGGCTTCAGGCTGCGCGTC +
Preference number: 1 (lower is better)
Translates to: TGRPHRSIWALVSFQ*MGSDPHPFGFRLRV
Trigger: GACGCGCAGCCTGAAGCCAAAGGGGTGAGGGTCAGAACCCATCCACTGAAAGGAGACCAGGGCCCAGATGCTCCGATGAGGCCTTCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166277.5
3UTR TCA 90 bp TCTGAGGCAGATAGGCCAGCAGCTCATTGTTATATAACTGAAATGTaGTCTTACCTAGAGACAGGGACTCTCAGACACTCCTTAGTTGCT +
Preference number: 1 (lower is better)
Translates to: SEADRPAAHCYITEM*SYLETGTLRHSLVA
Trigger: AGCAACTAAGGAGTGTCTGAGAGTCCCTGTCTCTAGGTAAGATCACATTTCAGTTATATAACAATGAGCTGCTGGCCTATCTGCCTCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
3UTR CCA 90 bp GCTCTGCAGGACTCACTGGGTTCTTACCTTTTGGGTCTTGTATTCTaGATCCGGGTTAAAGATCTCAAGTTGATTGATTTACATATTTGG +
Preference number: 1 (lower is better)
Translates to: ALQDSLGSYLLGLVF*IRVKDLKLIDLHIW
Trigger: CCAAATATGTAAATCAATCAACTTGAGATCTTTAACCCGGATCCAGAATACAAGACCCAAAAGGTAAGAACCCAGTGAGTCCTGCAGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
3UTR TCA 90 bp ACCTTTTGGGTCTTGTATTCTGGATCCGGGTTAAAGATCTCAAGTTaGTTGATTTACATATTTGGTAAACTGAGAGTCACAGAGAGGTTT +
Preference number: 1 (lower is better)
Translates to: TFWVLYSGSGLKISS*LIYIFGKLRVTERF
Trigger: AAACCTCTCTGTGACTCTCAGTTTACCAAATATGTAAATCAATCAACTTGAGATCTTTAACCCGGATCCAGAATACAAGACCCAAAAGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
3UTR-3UTR CCA 90 bp TCCCTGGAGGCCATGAAGCCAGCCTCAGATGCGAGGCCACCAGCCCCAAGACCTTCTCCTTTCAGTGGATaGGTTCTGACCCTCACCCCT +
Preference number: 2 (lower is better)
Translates to: SLEAMKPASDARPPAPRPSPFSG*VLTLTP
Trigger: AGGGGTGAGGGTCAGAACCCATCCACTGAAAGGAGA...AGGTCTTGGGGCTGGTGGCCTCGCATCTGAGGCTGGCTTCATGGCCTCCAGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166277.5
3UTR-3UTR CCA 90 bp TGTCATCTGGTGAAGATTGTGACCGAGCAGCTCCGGAGTGCTGCATCACAGTGCGGAGCATCTGGGCCCTaGTCTCCTTTCAGTGGATGG +
Preference number: 2 (lower is better)
Translates to: CHLVKIVTEQLRSAASQCGASGP*SPFSGW
Trigger: CCATCCACTGAAAGGAGACCAGGGCCCAGATGCTCC...GCACTGTGATGCAGCACTCCGGAGCTGCTCGGTCACAATCTTCACCAGATGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166277.5
ENSMUST00000214337.2
3UTR-3UTR TCA 90 bp CAGACACTCCTTAGTTGCTCTGCAGGACTCACTGGGTTCTTACCTTTTGGGTCTGCATCACAGTGCCCATaGCGGTCCCTGGAGGCCATG +
Preference number: 2 (lower is better)
Translates to: QTLLSCSAGLTGFLPFGSASQCP*RSLEAM
Trigger: CATGGCCTCCAGGGACCGTCATGGGCACTGTGATGC...AGACCCAAAAGGTAAGAACCCAGTGAGTCCTGCAGAGCAACTAAGGAGTGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
3UTR CAA 90 bp AGACACTCCTTAGTTGCTCTGCAGGACTCACTGGGTTCTTACCTTTaGGGTCTTGTATTCTGGATCCGGGTTAAAGATCTCAAGTTGATT +
Preference number: 2 (lower is better)
Translates to: RHSLVALQDSLGSYL*GLVFWIRVKDLKLI
Trigger: AATCAACTTGAGATCTTTAACCCGGATCCAGAATACAAGACCCAAAAGGTAAGAACCCAGTGAGTCCTGCAGAGCAACTAAGGAGTGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
3UTR GCA 72 bp ATGACGGTCCCTGGAGGCCATGAAGCCAGCCTCAGATaGGAGGCCACCAGCCCCAAGACCTGCACACCCCCA +
Preference number: 3 (lower is better)
Translates to: MTVPGGHEASLR*EATSPKTCTPP
Trigger: TGGGGGTGTGCAGGTCTTGGGGCTGGTGGCCTCGCATCTGAGGCTGGCTTCATGGCCTCCAGGGACCGTCAT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000166277.5
ENSMUST00000214337.2
3UTR TCA 72 bp ACCGAGCAGCTCCGGAGTGCTGCATCACAGTGCCCATaGCGGTCCCTGGAGGCCATGAAGCCAGCCTCAGAT +
Preference number: 3 (lower is better)
Translates to: TEQLRSAASQCP*RSLEAMKPASD
Trigger: ATCTGAGGCTGGCTTCATGGCCTCCAGGGACCGTCATGGGCACTGTGATGCAGCACTCCGGAGCTGCTCGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166277.5
ENSMUST00000214337.2
3UTR TCA 72 bp CATCTGGGCCCTGGTCTCCTTTCAGTGGATGGGTTCTaGCCCTCACCCCTTTGGCTTCAGGCTGCGCGTCCA +
Preference number: 3 (lower is better)
Translates to: HLGPGLLSVDGF*PSPLWLQAARP
Trigger: TGGACGCGCAGCCTGAAGCCAAAGGGGTGAGGGTCAGAACCCATCCACTGAAAGGAGACCAGGGCCCAGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166277.5
3UTR CCA 72 bp ATCGGAGCATCTGGGCCCTGGTCTCCTTTCAGTGGATaGGTTCTGACCCTCACCCCTTTGGCTTCAGGCTGC +
Preference number: 3 (lower is better)
Translates to: IGASGPWSPFSG*VLTLTPLASGC
Trigger: GCAGCCTGAAGCCAAAGGGGTGAGGGTCAGAACCCATCCACTGAAAGGAGACCAGGGCCCAGATGCTCCGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166277.5
3UTR CCA 72 bp GAGACACAGGAAGGCCTCATCGGAGCATCTGGGCCCTaGTCTCCTTTCAGTGGATGGGTTCTGACCCTCACC +
Preference number: 3 (lower is better)
Translates to: ETQEGLIGASGP*SPFSGWVLTLT
Trigger: GGTGAGGGTCAGAACCCATCCACTGAAAGGAGACCAGGGCCCAGATGCTCCGATGAGGCCTTCCTGTGTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166277.5
CDS-3UTR CCA 90 bp GGAGACACAGGAAGGCCTCATCGGAGCATCTGGGCCCTGGTCTCCTTTCAGTGGGCTTGCAGGGATGGCTaGCCACGGCAGCCCTGTCCT +
Preference number: 4 (lower is better)
Translates to: GDTGRPHRSIWALVSFQWACRDG*PRQPCP
Trigger: AGGACAGGGCTGCCGTGGCCAGCCATCCCTGCAAGC...CCACTGAAAGGAGACCAGGGCCCAGATGCTCCGATGAGGCCTTCCTGTGTCTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
CDS-3UTR CCA 90 bp GGAGGCCATGAAGCCAGCCTCAGATGCGAGGCCACCAGCCCCAAGACCTGCACACATCAGTCTGTCCCCTaGTTTTCATGGCGGAGGCCA +
Preference number: 4 (lower is better)
Translates to: GGHEASLRCEATSPKTCTHQSVP*FSWRRP
Trigger: TGGCCTCCGCCATGAAAACCAGGGGACAGACTGATG...TGTGCAGGTCTTGGGGCTGGTGGCCTCGCATCTGAGGCTGGCTTCATGGCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000166277.5
ENSMUST00000214337.2
CDS-3UTR TCA 90 bp GGAGACACAGGAAGGCCTCATCGGAGCATCTGGGCCCTGGTCTCCTTTCAGTGGTCTGTACCGGGGCTCTaGGCTTCTGAGTCTCTCTGG +
Preference number: 4 (lower is better)
Translates to: GDTGRPHRSIWALVSFQWSVPGL*ASESLW
Trigger: CCAGAGAGACTCAGAAGCTCAGAGCCCCGGTACAGA...CCACTGAAAGGAGACCAGGGCCCAGATGCTCCGATGAGGCCTTCCTGTGTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
CDS-3UTR GCA 90 bp GGAGACACAGGAAGGCCTCATCGGAGCATCTGGGCCCTGGTCTCCTTTCAGTGGTTCTCCCAGGCTCTCTaGAGGTCCCTATTAGCCCAC +
Preference number: 4 (lower is better)
Translates to: GDTGRPHRSIWALVSFQWFSQAL*RSLLAH
Trigger: GTGGGCTAATAGGGACCTGCAGAGAGCCTGGGAGAA...CCACTGAAAGGAGACCAGGGCCCAGATGCTCCGATGAGGCCTTCCTGTGTCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166277.5
ENSMUST00000214337.2
CDS-3UTR CCA 90 bp TCTGGTGAAGATTGTGACCGAGCAGCTCCGGAGTGCTGCATCACAGTGCCCATGCATCAGTCTGTCCCCTaGTTTTCATGGCGGAGGCCA +
Preference number: 4 (lower is better)
Translates to: SGEDCDRAAPECCITVPMHQSVP*FSWRRP
Trigger: TGGCCTCCGCCATGAAAACCAGGGGACAGACTGATG...CATGGGCACTGTGATGCAGCACTCCGGAGCTGCTCGGTCACAATCTTCACCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000166277.5
ENSMUST00000214337.2
CDS-3UTR TCA 90 bp GGAGACACAGGAAGGCCTCATCGGAGCATCTGGGCCCTGGTCTCCTTTCAGTGGCTCTCTGGGAAGACTTaGTTTTGTTTCTGCACCTTC +
Preference number: 4 (lower is better)
Translates to: GDTGRPHRSIWALVSFQWLSGKT*FCFCTF
Trigger: GAAGGTGCAGAAACAAAATCAAGTCTTCCCAGAGAG...CCACTGAAAGGAGACCAGGGCCCAGATGCTCCGATGAGGCCTTCCTGTGTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
CDS-3UTR GCA 90 bp ACACAGAACATGCTTCTTCCTCACGTCCATGGCCAGAAGCCCCATAGGCCTTTGTTCTCCCAGGCTCTCTaGAGGTCCCTATTAGCCCAC +
Preference number: 4 (lower is better)
Translates to: TQNMLLPHVHGQKPHRPLFSQAL*RSLLAH
Trigger: GTGGGCTAATAGGGACCTGCAGAGAGCCTGGGAGAA...CAAAGGCCTATGGGGCTTCTGGCCATGGACGTGAGGAAGAAGCATGTTCTGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
CDS-3UTR GCA 90 bp ACCCCAAGGAGACACAGGAAGGCCTCATCGGAGCATCTGGGCCCTGGTCTCCTTCTGCACCTTCATAAATaGCTGTTCTCTGCTCTTCCT +
Preference number: 4 (lower is better)
Translates to: TPRRHRKASSEHLGPGLLLHLHK*LFSALP
Trigger: AGGAAGAGCAGAGAACAGGCATTTATGAAGGTGCAG...AAGGAGACCAGGGCCCAGATGCTCCGATGAGGCCTTCCTGTGTCTCCTTGGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
3UTR CAA 72 bp CTTCCTCACGTCCATGGCCAGAAGCCCCATAGGCCTTaGCTGGATGAACAGATGAAAGTGTGCAAGAGGTCT +
Preference number: 4 (lower is better)
Translates to: LPHVHGQKPHRP*LDEQMKVCKRS
Trigger: AGACCTCTTGCACACTTTCATCTGTTCATCCAGCAAAGGCCTATGGGGCTTCTGGCCATGGACGTGAGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
CDS-3UTR TCA 90 bp CAGACACTCCTTAGTTGCTCTGCAGGACTCACTGGGTTCTTACCTTTTGGGTCTGGGGCTCTGAGCTTCTaGGTCTCTCTGGGAAGACTT +
Preference number: 4 (lower is better)
Translates to: QTLLSCSAGLTGFLPFGSGALSF*VSLGRL
Trigger: AAGTCTTCCCAGAGAGACTCAGAAGCTCAGAGCCCC...AGACCCAAAAGGTAAGAACCCAGTGAGTCCTGCAGAGCAACTAAGGAGTGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
CDS-3UTR TCA 90 bp TCTGGTGAAGATTGTGACCGAGCAGCTCCGGAGTGCTGCATCACAGTGCCCATGCCATCTTCAACTTCTTaGACTTTAGGCAGAGATGAC +
Preference number: 4 (lower is better)
Translates to: SGEDCDRAAPECCITVPMPSSTS*TLGRDD
Trigger: GTCATCTCTGCCTAAAGTTCAAGAAGTTGAAGATGG...CATGGGCACTGTGATGCAGCACTCCGGAGCTGCTCGGTCACAATCTTCACCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166277.5
ENSMUST00000214337.2
CDS-3UTR TCA 90 bp CATCTGGTGAAGATTGTGACCGAGCAGCTCCGGAGTGCTGCATCACAGTGCCCACCATCTTCAACTTCTTaGACTTTAGGCAGAGATGAC +
Preference number: 4 (lower is better)
Translates to: HLVKIVTEQLRSAASQCPPSSTS*TLGRDD
Trigger: GTCATCTCTGCCTAAAGTTCAAGAAGTTGAAGATGG...TGGGCACTGTGATGCAGCACTCCGGAGCTGCTCGGTCACAATCTTCACCAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000166277.5
ENSMUST00000214337.2
CDS-3UTR CCA 90 bp TGTCATCTGGTGAAGATTGTGACCGAGCAGCTCCGGAGTGCTGCATCACAGTGCGCTTCTGAGTCTCTCTaGGAAGACTTGATTTTGTTT +
Preference number: 4 (lower is better)
Translates to: CHLVKIVTEQLRSAASQCASESL*EDLILF
Trigger: AAACAAAATCAAGTCTTCCCAGAGAGACTCAGAAGC...GCACTGTGATGCAGCACTCCGGAGCTGCTCGGTCACAATCTTCACCAGATGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
3UTR CAA 72 bp TTAGTTGCTCTGCAGGACTCACTGGGTTCTTACCTTTaGGGTCTTGTATTCTGGATCCGGGTTAAAGATCTC +
Preference number: 4 (lower is better)
Translates to: LVALQDSLGSYL*GLVFWIRVKDL
Trigger: GAGATCTTTAACCCGGATCCAGAATACAAGACCCAAAAGGTAAGAACCCAGTGAGTCCTGCAGAGCAACTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
CDS-3UTR CAA 90 bp CTGGAGGCCATGAAGCCAGCCTCAGATGCGAGGCCACCAGCCCCAAGACCTGCACAGGTGTGTCTGCGCTaGCAGGGATGGCTGGCCACG +
Preference number: 5 (lower is better)
Translates to: LEAMKPASDARPPAPRPAQVCLR*QGWLAT
Trigger: CGTGGCCAGCCATCCCTGCAAGCGCAGACACACCTG...TGCAGGTCTTGGGGCTGGTGGCCTCGCATCTGAGGCTGGCTTCATGGCCTCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
CDS TCA 90 bp GGCAGCCCTGTCCTCCCGCCGTCTCTGTGCTCTGTACCGGGGCTCTaGGCTTCTGAGTCTCTCTGGGAAGACTTGATTTTGTTTCTGCAC +
Preference number: 5 (lower is better)
Translates to: GSPVLPPSLCSVPGL*ASESLWEDLILFLH
Trigger: GTGCAGAAACAAAATCAAGTCTTCCCAGAGAGACTCAGAAGCTCAGAGCCCCGGTACAGAGCACAGAGACGGCGGGAGGACAGGGCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
CDS-3UTR CAA 90 bp AGGCCTCATCGGAGCATCTGGGCCCTGGTCTCCTTTCAGTGGATGGGTTCTGACTGGGAAGACTTGATTTaGTTTCTGCACCTTCATAAA +
Preference number: 5 (lower is better)
Translates to: RPHRSIWALVSFQWMGSDWEDLI*FLHLHK
Trigger: TTTATGAAGGTGCAGAAACAAAATCAAGTCTTCCCA...GTCAGAACCCATCCACTGAAAGGAGACCAGGGCCCAGATGCTCCGATGAGGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
CDS GCA 90 bp GAGTCTCTCTGGGAAGACTTGATTTTGTTTCTGCACCTTCATAAATaGCTGTTCTCTGCTCTTCCTTCTCTGTGTAAAGTTATTTCGGCC +
Preference number: 5 (lower is better)
Translates to: ESLWEDLILFLHLHK*LFSALPSLCKVISA
Trigger: GGCCGAAATAACTTTACACAGAGAAGGAAGAGCAGAGAACAGGCATTTATGAAGGTGCAGAAACAAAATCAAGTCTTCCCAGAGAGACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
CDS-3UTR CAA 90 bp ATCAGTCCAAGAAACACAATAAATAGCTGTGCTATGTCATCTGGTGAAGATTGTTCTCTCTGGGAAGACTaGATTTTGTTTCTGCACCTT +
Preference number: 5 (lower is better)
Translates to: ISPRNTINSCAMSSGEDCSLWED*ILFLHL
Trigger: AAGGTGCAGAAACAAAATCAAGTCTTCCCAGAGAGA...ACAATCTTCACCAGATGACATAGCACAGCTATTTATTGTGTTTCTTGGACTGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
CDS GCA 72 bp CCCTCTCAGCTCCTTTTCTCCAGGTGTGTCTGCGCTTaGAGGGATGGCTGGCCACGGCAGCCCTGTCCTCCC +
Preference number: 6 (lower is better)
Translates to: PSQLLFSRCVCA*RDGWPRQPCPP
Trigger: GGGAGGACAGGGCTGCCGTGGCCAGCCATCCCTGCAAGCGCAGACACACCTGGAGAAAAGGAGCTGAGAGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
CDS CCA 72 bp CTTTTCTCCAGGTGTGTCTGCGCTTGCAGGGATGGCTaGCCACGGCAGCCCTGTCCTCCCGCCGTCTCTGTG +
Preference number: 6 (lower is better)
Translates to: LFSRCVCACRDG*PRQPCPPAVSV
Trigger: CACAGAGACGGCGGGAGGACAGGGCTGCCGTGGCCAGCCATCCCTGCAAGCGCAGACACACCTGGAGAAAAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
CDS CAA 72 bp TCCCTCTCAGCTCCTTTTCTCCAGGTGTGTCTGCGCTaGCAGGGATGGCTGGCCACGGCAGCCCTGTCCTCC +
Preference number: 6 (lower is better)
Translates to: SLSAPFLQVCLR*QGWLATAALSS
Trigger: GGAGGACAGGGCTGCCGTGGCCAGCCATCCCTGCAAGCGCAGACACACCTGGAGAAAAGGAGCTGAGAGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214337.2
CDS CCA 72 bp AGTTATTTCGGCCATCAGTCTGTCCCCTGGTTTTCATaGCGGAGGCCACCCTCTGCAGAAGCAGGTAGTTGT +
Preference number: 6 (lower is better)
Translates to: SYFGHQSVPWFS*RRPPSAEAGSC
Trigger: ACAACTACCTGCTTCTGCAGAGGGTGGCCTCCGCCATGAAAACCAGGGGACAGACTGATGGCCGAAATAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000166277.5
ENSMUST00000214337.2