RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CFAP54 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020014

Ensembl transcript IDs: ENSMUST00000020200.14, ENSMUST00000067705.8, ENSMUST00000163209.3, ENSMUST00000164979.2, ENSMUST00000168110.8, ENSMUST00000168617.3, ENSMUST00000170065.8, ENSMUST00000212902.2, ENSMUST00000220280.2

Found 513 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATCTGGCCCCAGATTCTGCAGCCCTTCAGTTTGCTTGCGCTCTGGTaGCTGCAGGGAGCTCTCAGCCCTGCAACCTCCGGCTGGGCTGTG +
Preference number: 1 (lower is better)
Translates to: IWPQILQPFSLLALW*LQGALSPATSGWAV
Trigger: CACAGCCCAGCCGGAGGTTGCAGGGCTGAGAGCTCCCTGCAGTCACCAGAGCGCAAGCAAACTGAAGGGCTGCAGAATCTGGGGCCAGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR GCA 90 bp ACCTCTGGACATCTGGCCCCAGATTCTGCAGCCCTTCAGTTTGCTTaGGCTCTGGTGACTGCAGGGAGCTCTCAGCCCTGCAACCTCCGG +
Preference number: 1 (lower is better)
Translates to: TSGHLAPDSAALQFA*ALVTAGSSQPCNLR
Trigger: CCGGAGGTTGCAGGGCTGAGAGCTCCCTGCAGTCACCAGAGCGCAAGCAAACTGAAGGGCTGCAGAATCTGGGGCCAGATGTCCAGAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR TCA 90 bp TTAACCTCTGAGATGAACGGCGCGGGCTTCAGGGTCACAGAGCAGTaGGTCCGGGCCAGCAGGATGGGTGGGGGAGGAATTCTGCTCTTC +
Preference number: 1 (lower is better)
Translates to: LTSEMNGAGFRVTEQ*VRASRMGGGGILLF
Trigger: GAAGAGCAGAATTCCTCCCCCACCCATCCTGCTGGCCCGGACTCACTGCTCTGTGACCCTGAAGCCCGCGCCGTTCATCTCAGAGGTTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR GCA 90 bp CTCCTCCTCTTCCAGGGGACTCACCTGTATGCTGGCCTGTATCTCTaGAGGGCGATTGCTGCCAGGTGTAGCCTAGCCTCCACCATGATC +
Preference number: 1 (lower is better)
Translates to: LLLFQGTHLYAGLYL*RAIAARCSLASTMI
Trigger: GATCATGGTGGAGGCTAGGCTACACCTGGCAGCAATCGCCCTGCAGAGATACAGGCCAGCATACAGGTGAGTCCCCTGGAAGAGGAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR GCA 90 bp TGGTACCTCTGGACATCTGGCCCCAGATTCTGCAGCCCTTCAGTTTaGTTGCGCTCTGGTGACTGCAGGGAGCTCTCAGCCCTGCAACCT +
Preference number: 1 (lower is better)
Translates to: WYLWTSGPRFCSPSV*LRSGDCRELSALQP
Trigger: AGGTTGCAGGGCTGAGAGCTCCCTGCAGTCACCAGAGCGCAAGCAAACTGAAGGGCTGCAGAATCTGGGGCCAGATGTCCAGAGGTACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR GCA 90 bp AGTCAGCATGGGCAGGAGCCACTTTCCCCACACGGCTGTCTTCAGTaGAGATGCTGGTACCTCTGGACATCTGGCCCCAGATTCTGCAGC +
Preference number: 1 (lower is better)
Translates to: SQHGQEPLSPHGCLQ*RCWYLWTSGPRFCS
Trigger: GCTGCAGAATCTGGGGCCAGATGTCCAGAGGTACCAGCATCTGCACTGAAGACAGCCGTGTGGGGAAAGTGGCTCCTGCCCATGCTGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR TCA 90 bp ATCTGCTTTGCAACCCAAGATGCAGTACCAGGACGCCTTAACCTCTaGGATGAACGGCGCGGGCTTCAGGGTCACAGAGCAGTGAGTCCG +
Preference number: 1 (lower is better)
Translates to: ICFATQDAVPGRLNL*DERRGLQGHRAVSP
Trigger: CGGACTCACTGCTCTGTGACCCTGAAGCCCGCGCCGTTCATCTCAGAGGTTAAGGCGTCCTGGTACTGCATCTTGGGTTGCAAAGCAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR GCA 90 bp GTTGTGGTAGATAATGGGTGCGAGGAGCCCGTAGCACTGGGTCACTaGTTGGAGGGCGAAGTTGGCGTCATTGAGGAAGTTGCTGAGCTC +
Preference number: 1 (lower is better)
Translates to: VVVDNGCEEPVALGH*LEGEVGVIEEVAEL
Trigger: GAGCTCAGCAACTTCCTCAATGACGCCAACTTCGCCCTCCAAGCAGTGACCCAGTGCTACGGGCTCCTCGCACCCATTATCTACCACAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR GCA 90 bp GATCTGGATGACAGGTACCAAGACGATGTTGTGGTAGATAATGGGTaGGAGGAGCCCGTAGCACTGGGTCACTGCTTGGAGGGCGAAGTT +
Preference number: 1 (lower is better)
Translates to: DLDDRYQDDVVVDNG*EEPVALGHCLEGEV
Trigger: AACTTCGCCCTCCAAGCAGTGACCCAGTGCTACGGGCTCCTCGCACCCATTATCTACCACAACATCGTCTTGGTACCTGTCATCCAGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR CCA 90 bp GTCTGGCTCTCCAGCATACAGCCAGCCACTGTGGGACCATTAAGCTaGAATAGGCAGACTGGGAAGCTGAAAGTGGAACAGAGGTTACCG +
Preference number: 1 (lower is better)
Translates to: VWLSSIQPATVGPLS*NRQTGKLKVEQRLP
Trigger: CGGTAACCTCTGTTCCACTTTCAGCTTCCCAGTCTGCCTATTCCAGCTTAATGGTCCCACAGTGGCTGGCTGTATGCTGGAGAGCCAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR CCA 90 bp GTACATCCGAGCGGTGACAGCAGAGAGAGGCGGGTAAATGAGAATTaGTTTCGTTGTCTCCCCAATAGCATCACCAATGAGTTTCCCGCT +
Preference number: 1 (lower is better)
Translates to: VHPSGDSRERRVNEN*FRCLPNSITNEFPA
Trigger: AGCGGGAAACTCATTGGTGATGCTATTGGGGAGACAACGAAACCAATTCTCATTTACCCGCCTCTCTCTGCTGTCACCGCTCGGATGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR GCA 90 bp AAGAGTTGCTGTGCTAGTGCTGTTTTATACGTGGCTGCGTGCGTGTaGACACAAGAGCCTTTACACCATCAGTCTCTAGAGCAGAGTGTC +
Preference number: 1 (lower is better)
Translates to: KSCCASAVLYVAACV*TQEPLHHQSLEQSV
Trigger: GACACTCTGCTCTAGAGACTGATGGTGTAAAGGCTCTTGTGTGCACACGCACGCAGCCACGTATAAAACAGCACTAGCACAGCAACTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR GCA 90 bp TCCAGAGCTACTAGCACATTCTCACACTCCACCAGTCTAGCGACTTaGTGGGCGGGGAAAATCTCGTTGCCTTTAATATTATCACAGAAG +
Preference number: 1 (lower is better)
Translates to: SRATSTFSHSTSLAT*WAGKISLPLILSQK
Trigger: CTTCTGTGATAATATTAAAGGCAACGAGATTTTCCCCGCCCAGCAAGTCGCTAGACTGGTGGAGTGTGAGAATGTGCTAGTAGCTCTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR CCA 90 bp AGAGCTACTAGCACATTCTCACACTCCACCAGTCTAGCGACTTGCTaGGCGGGGAAAATCTCGTTGCCTTTAATATTATCACAGAAGAGA +
Preference number: 1 (lower is better)
Translates to: RATSTFSHSTSLATC*AGKISLPLILSQKR
Trigger: TCTCTTCTGTGATAATATTAAAGGCAACGAGATTTTCCCCGCCCAGCAAGTCGCTAGACTGGTGGAGTGTGAGAATGTGCTAGTAGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR TCA 90 bp GTTCATCATCAGTTGCGTGATGCTGACAGAGTATTTCTGCAATTATaGAGAGTTGCTGTGCTAGTGCTGTTTTATACGTGGCTGCGTGCG +
Preference number: 1 (lower is better)
Translates to: VHHQLRDADRVFLQL*RVAVLVLFYTWLRA
Trigger: CGCACGCAGCCACGTATAAAACAGCACTAGCACAGCAACTCTTCATAATTGCAGAAATACTCTGTCAGCATCACGCAACTGATGATGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR TCA 90 bp TTTAATTTCAAAGAAGCTTCTGCCATCGGCTGGTATCGCTTCTCCTaGGTTTGGGAGGTGGTTGTTGTTCAGCCTTACTTTCCCATAGCT +
Preference number: 1 (lower is better)
Translates to: FNFKEASAIGWYRFS*VWEVVVVQPYFPIA
Trigger: AGCTATGGGAAAGTAAGGCTGAACAACAACCACCTCCCAAACTCAGGAGAAGCGATACCAGCCGATGGCAGAAGCTTCTTTGAAATTAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR GCA 90 bp CAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATaGTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCT +
Preference number: 1 (lower is better)
Translates to: QKACSLSSYQSNVTP*SLTSSGLRCTPHFS
Trigger: AGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
3UTR TCA 90 bp ATTTATCTTTTCAGGCAGCAGCACCTGCTGTGGCTTCTTGGTTCTTaGAGTTTTCTTAGAACAAACACCCTCCTCTGCAGTTTCCTCTTG +
Preference number: 1 (lower is better)
Translates to: IYLFRQQHLLWLLGS*SFLRTNTLLCSFLL
Trigger: CAAGAGGAAACTGCAGAGGAGGGTGTTTGTTCTAAGAAAACTTCAAGAACCAAGAAGCCACAGCAGGTGCTGCTGCCTGAAAAGATAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR GCA 90 bp ACCAGAATGTGGGGCAAGCCTCTGTTTATTAGCTCTTCAAGTGCCTaGATGTTGTCTTTATGGGTGAGAGGTTTTCCAGAATCGAATGAT +
Preference number: 1 (lower is better)
Translates to: TRMWGKPLFISSSSA*MLSLWVRGFPESND
Trigger: ATCATTCGATTCTGGAAAACCTCTCACCCATAAAGACAACATGCAGGCACTTGAAGAGCTAATAAACAGAGGCTTGCCCCACATTCTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR GCA 90 bp CTTGAAGTTTTCTTAGAACAAACACCCTCCTCTGCAGTTTCCTCTTaGTCAATACCAAAAAGAGACCTGCACCCTGATGTGATATCCAGC +
Preference number: 1 (lower is better)
Translates to: LEVFLEQTPSSAVSS*SIPKRDLHPDVISS
Trigger: GCTGGATATCACATCAGGGTGCAGGTCTCTTTTTGGTATTGAGCAAGAGGAAACTGCAGAGGAGGGTGTTTGTTCTAAGAAAACTTCAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR TCA 90 bp ATCAGCTTCTTAGACGGTCAGTCCAGCCCTCAACACTGTCTCAGATaGTGCTACTTTCAAAGAAGTAAACCTCCTTTGTCTTGCTTTTAT +
Preference number: 1 (lower is better)
Translates to: ISFLDGQSSPQHCLR*CYFQRSKPPLSCFY
Trigger: ATAAAAGCAAGACAAAGGAGGTTTACTTCTTTGAAAGTAGCATCATCTGAGACAGTGTTGAGGGCTGGACTGACCGTCTAAGAAGCTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR TCA 90 bp TTGTTGTGTGACACGAAATCAAACCTAGTTGTCACTGATATTCTATaGTTGTCACCAAGAAGGTCTGCATGGTCTTTGTCCCCTTGCTCT +
Preference number: 1 (lower is better)
Translates to: LLCDTKSNLVVTDIL*LSPRRSAWSLSPCS
Trigger: AGAGCAAGGGGACAAAGACCATGCAGACCTTCTTGGTGACAATCATAGAATATCAGTGACAACTAGGTTTGATTTCGTGTCACACAACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR GCA 90 bp CAATCAAATGTCACTCCATGCTCTCTTACTTCATCAGGCCTGAGATaGACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGC +
Preference number: 1 (lower is better)
Translates to: QSNVTPCSLTSSGLR*TPHFSTSLTLVHTS
Trigger: GCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGTGACATTTGATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
3UTR GCA 90 bp GGTCATACTCCTTCCAGGAACGTAGAATCTTTGTCATGTAGAAGATaGAGCAAGCTATCATGTGCTGTATACTTTCAAAGCTGGAGATAT +
Preference number: 1 (lower is better)
Translates to: GHTPSRNVESLSCRR*SKLSCAVYFQSWRY
Trigger: ATATCTCCAGCTTTGAAAGTATACAGCACATGATAGCTTGCTGCATCTTCTACATGACAAAGATTCTACGTTCCTGGAAGGAGTATGACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR GCA 90 bp GCCAATCTCGATCACTATGGCTTTAAACTTACTGGGAGACTTGAGTaGCCTCCTAGAAATGACAGTCTCCTTATATTTTATCCTTTTCAC +
Preference number: 1 (lower is better)
Translates to: ANLDHYGFKLTGRLE*PPRNDSLLIFYPFH
Trigger: GTGAAAAGGATAAAATATAAGGAGACTGTCATTTCTAGGAGGGCACTCAAGTCTCCCAGTAAGTTTAAAGCCATAGTGATCGAGATTGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR CCA 90 bp CACTGGATCACACCACTATTAACACGTGACACTAGGATTTCAACTTaGGTCCACCAGAAAACAGAACTCATAGACACTGTTCATTATGTA +
Preference number: 1 (lower is better)
Translates to: HWITPLLTRDTRIST*VHQKTELIDTVHYV
Trigger: TACATAATGAACAGTGTCTATGAGTTCTGTTTTCTGGTGGACCCAAGTTGAAATCCTAGTGTCACGTGTTAATAGTGGTGTGATCCAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR TCA 90 bp AAAAGGTACAAGAGGATCGAAGAAGTGTCTGCCAAGATGTTGGAATaGAGCCTTTTCTGCGTTATTGTCATGATGTTGCTTAGACAGATA +
Preference number: 1 (lower is better)
Translates to: KRYKRIEEVSAKMLE*SLFCVIVMMLLRQI
Trigger: TATCTGTCTAAGCAACATCATGACAATAACGCAGAAAAGGCTTCATTCCAACATCTTGGCAGACACTTCTTCGATCCTCTTGTACCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR TCA 90 bp GGGTTTGCTCCTCTCAGTAATAAATTGGTAGTACATTATTTTTGGTaGAGGATCGGGAATACAGTTGATTGTCGCAGCCAAACTTATGAA +
Preference number: 1 (lower is better)
Translates to: GFAPLSNKLVVHYFW*RIGNTVDCRSQTYE
Trigger: TTCATAAGTTTGGCTGCGACAATCAACTGTATTCCCGATCCTTCACCAAAAATAATGTACTACCAATTTATTACTGAGAGGAGCAAACCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR GCA 90 bp AAAGATATTTCTGAGGAAAAGGTACAAGAGGATCGAAGAAGTGTCTaGCAAGATGTTGGAATGAAGCCTTTTCTGCGTTATTGTCATGAT +
Preference number: 1 (lower is better)
Translates to: KDISEEKVQEDRRSV*QDVGMKPFLRYCHD
Trigger: ATCATGACAATAACGCAGAAAAGGCTTCATTCCAACATCTTGGCAGACACTTCTTCGATCCTCTTGTACCTTTTCCTCAGAAATATCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR GCA 90 bp AAGTTCAGAGCTTCAGGCTTGATACACAGCAGTCTACCACTCAACTaGATTAAACCAGAAGTACACAATCTTTACATATACATGTACATA +
Preference number: 1 (lower is better)
Translates to: KFRASGLIHSSLPLN*IKPEVHNLYIYMYI
Trigger: TATGTACATGTATATGTAAAGATTGTGTACTTCTGGTTTAATGCAGTTGAGTGGTAGACTGCTGTGTATCAAGCCTGAAGCTCTGAACTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR CCA 90 bp ACAGGGAAAAGTTGGCATCATTACTTCATTTTATATATGTATCACTaGATCACACCACTATTAACACGTGACACTAGGATTTCAACTTGG +
Preference number: 1 (lower is better)
Translates to: TGKSWHHYFILYMYH*ITPLLTRDTRISTW
Trigger: CCAAGTTGAAATCCTAGTGTCACGTGTTAATAGTGGTGTGATCCAGTGATACATATATAAAATGAAGTAATGATGCCAACTTTTCCCTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR-3UTR CCA 90 bp GAGCCCGTAGCACTGGGTCACTGCTTGGAGGGCGAAGTTGGCGTCATTGAGGAATCCGGGCCAGCAGGATaGGTGGGGGAGGAATTCTGC +
Preference number: 2 (lower is better)
Translates to: EPVALGHCLEGEVGVIEESGPAG*VGEEFC
Trigger: GCAGAATTCCTCCCCCACCCATCCTGCTGGCCCGGA...TTCCTCAATGACGCCAACTTCGCCCTCCAAGCAGTGACCCAGTGCTACGGGCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR CAA 90 bp TACCTCTGGACATCTGGCCCCAGATTCTGCAGCCCTTCAGTTTGCTaGCGCTCTGGTGACTGCAGGGAGCTCTCAGCCCTGCAACCTCCG +
Preference number: 2 (lower is better)
Translates to: YLWTSGPRFCSPSVC*RSGDCRELSALQPP
Trigger: CGGAGGTTGCAGGGCTGAGAGCTCCCTGCAGTCACCAGAGCGCAAGCAAACTGAAGGGCTGCAGAATCTGGGGCCAGATGTCCAGAGGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR-3UTR GCA 90 bp GCTGCCAGGTGTAGCCTAGCCTCCACCATGATCTCCAGCTCCAAAACAGAGGACGGCCTGTGGCACTGGTaGTCTGTCTCCGACAGCAGG +
Preference number: 2 (lower is better)
Translates to: AARCSLASTMISSSKTEDGLWHW*SVSDSR
Trigger: CCTGCTGTCGGAGACAGAGCACCAGTGCCACAGGCC...GTCCTCTGTTTTGGAGCTGGAGATCATGGTGGAGGCTAGGCTACACCTGGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR-3UTR CCA 90 bp CTTCATTCGGCCGCGAGATGGCGAGGAGCTAAGTCAAGCACACTTCTGAGTGACGGAGGGCAGTCAGCATaGGCAGGAGCCACTTTCCCC +
Preference number: 2 (lower is better)
Translates to: LHSAARWRGAKSSTLLSDGGQSA*AGATFP
Trigger: GGGGAAAGTGGCTCCTGCCCATGCTGACTGCCCTCC...GTCACTCAGAAGTGTGCTTGACTTAGCTCCTCGCCATCTCGCGGCCGAATGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR CAA 90 bp GTGGTAGATAATGGGTGCGAGGAGCCCGTAGCACTGGGTCACTGCTaGGAGGGCGAAGTTGGCGTCATTGAGGAAGTTGCTGAGCTCCAG +
Preference number: 2 (lower is better)
Translates to: VVDNGCEEPVALGHC*EGEVGVIEEVAELQ
Trigger: CTGGAGCTCAGCAACTTCCTCAATGACGCCAACTTCGCCCTCCAAGCAGTGACCCAGTGCTACGGGCTCCTCGCACCCATTATCTACCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR CAA 90 bp AGTTACCTTGTTCTGAGGCTTCAGGCATCTTCATCTGAGAAGCTGTaGGGGTGTCTGGCTCTCCAGCATACAGCCAGCCACTGTGGGACC +
Preference number: 2 (lower is better)
Translates to: SYLVLRLQASSSEKL*GCLALQHTASHCGT
Trigger: GGTCCCACAGTGGCTGGCTGTATGCTGGAGAGCCAGACACCCCAACAGCTTCTCAGATGAAGATGCCTGAAGCCTCAGAACAAGGTAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR-3UTR CCA 90 bp GCTGCCAGGTGTAGCCTAGCCTCCACCATGATCTCCAGCTCCAAAACAGAGGACTTATCTTTCAGGTTTTaGGGGGTGGGTTTGCTCCTC +
Preference number: 2 (lower is better)
Translates to: AARCSLASTMISSSKTEDLSFRF*GVGLLL
Trigger: GAGGAGCAAACCCACCCCCCAAAACCTGAAAGATAA...GTCCTCTGTTTTGGAGCTGGAGATCATGGTGGAGGCTAGGCTACACCTGGCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR-3UTR GCA 90 bp GCTGCCAGGTGTAGCCTAGCCTCCACCATGATCTCCAGCTCCAAAACAGAGGACAGCTCTTCAAGTGCCTaGATGTTGTCTTTATGGGTG +
Preference number: 2 (lower is better)
Translates to: AARCSLASTMISSSKTEDSSSSA*MLSLWV
Trigger: CACCCATAAAGACAACATGCAGGCACTTGAAGAGCT...GTCCTCTGTTTTGGAGCTGGAGATCATGGTGGAGGCTAGGCTACACCTGGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR-3UTR GCA 90 bp AGGCAGAGAACATGGTTTCCCTCTTCTTCTAGCTTTGAGACCAAAAGACCAAATGGGAGCTCTCAGCCCTaGAACCTCCGGCTGGGCTGT +
Preference number: 2 (lower is better)
Translates to: RQRTWFPSSSSFETKRPNGSSQP*NLRLGC
Trigger: ACAGCCCAGCCGGAGGTTGCAGGGCTGAGAGCTCCC...ATTTGGTCTTTTGGTCTCAAAGCTAGAAGAAGAGGGAAACCATGTTCTCTGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR-3UTR CCA 90 bp TCCAGGGGACTCACCTGTATGCTGGCCTGTATCTCTGCAGGGCGATTGCTGCCAAGGTTAACCAGAATGTaGGGCAAGCCTCTGTTTATT +
Preference number: 2 (lower is better)
Translates to: SRGLTCMLACISAGRLLPRLTRM*GKPLFI
Trigger: AATAAACAGAGGCTTGCCCCACATTCTGGTTAACCT...TGGCAGCAATCGCCCTGCAGAGATACAGGCCAGCATACAGGTGAGTCCCCTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR-3UTR TCA 90 bp CATAATCTATCCTCATATAGTGACCTATCCTCAGAGGCTAGAAGGATGCCTAGCCCGACAGCAGGGAGTTaGCCTTCTCCTCTGCCTCCA +
Preference number: 2 (lower is better)
Translates to: HNLSSYSDLSSEARRMPSPTAGS*PSPLPP
Trigger: TGGAGGCAGAGGAGAAGGTCAACTCCCTGCTGTCGG...GCTAGGCATCCTTCTAGCCTCTGAGGATAGGTCACTATATGAGGATAGATTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR-3UTR TCA 90 bp ATGATGGAAATTAAGTTCAGAGCTTCAGGCTTGATACACAGCAGTCTACCACTCGAGAGGATGGGGGAATaGGGGGATGACAGGGTGGGT +
Preference number: 2 (lower is better)
Translates to: MMEIKFRASGLIHSSLPLERMGE*GDDRVG
Trigger: ACCCACCCTGTCATCCCCTCATTCCCCCATCCTCTC...GAGTGGTAGACTGCTGTGTATCAAGCCTGAAGCTCTGAACTTAATTTCCATCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR-3UTR TCA 90 bp AGGTCTGCATGGTCTTTGTCCCCTTGCTCTTCTAAGTTTATTTGTGACAGCCTTTCGGCTGAGCGTGCATaGAGAGAGGTGGAAGGAGGA +
Preference number: 2 (lower is better)
Translates to: RSAWSLSPCSSKFICDSLSAERA*REVEGG
Trigger: TCCTCCTTCCACCTCTCTTCATGCACGCTCAGCCGA...AAGGCTGTCACAAATAAACTTAGAAGAGCAAGGGGACAAAGACCATGCAGACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR-3UTR CCA 90 bp GCTTTAAACTTACTGGGAGACTTGAGTGCCCTCCTAGAAATGACAGTCTCCTTAGGCCAGCAGGATGGGTaGGGGAGGAATTCTGCTCTT +
Preference number: 2 (lower is better)
Translates to: ALNLLGDLSALLEMTVSLGQQDG*GRNSAL
Trigger: AAGAGCAGAATTCCTCCCCCACCCATCCTGCTGGCC...TAAGGAGACTGTCATTTCTAGGAGGGCACTCAAGTCTCCCAGTAAGTTTAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR GCA 90 bp GGTATCGCTTCTCCTGAGTTTGGGAGGTGGTTGTTGTTCAGCCTTACTTTCCCAAGCTTCCATCTGCTTTaGAACCCAAGATGCAGTACC +
Preference number: 2 (lower is better)
Translates to: GIASPEFGRWLLFSLTFPSFHLL*NPRCST
Trigger: GGTACTGCATCTTGGGTTGCAAAGCAGATGGAAGCT...TGGGAAAGTAAGGCTGAACAACAACCACCTCCCAAACTCAGGAGAAGCGATACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR CCA 90 bp ATGATGGAAATTAAGTTCAGAGCTTCAGGCTTGATACACAGCAGTCTACCACTCAGGGATGTGAGAGGATaGGGGAGAAGGAGTGAGGGG +
Preference number: 2 (lower is better)
Translates to: MMEIKFRASGLIHSSLPLRDVRG*GRRSEG
Trigger: CCCCTCACTCCTTCTCCCCCATCCTCTCACATCCCT...GAGTGGTAGACTGCTGTGTATCAAGCCTGAAGCTCTGAACTTAATTTCCATCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR-3UTR CCA 90 bp CACTTGTGGTGGTTAACTTTTAGTGTTACTTCTCATCATCAGCTTCATTCGGCCGTACCTCTGGACATCTaGCCCCAGATTCTGCAGCCC +
Preference number: 2 (lower is better)
Translates to: HLWWLTFSVTSHHQLHSAVPLDI*PQILQP
Trigger: GGGCTGCAGAATCTGGGGCCAGATGTCCAGAGGTAC...GGCCGAATGAAGCTGATGATGAGAAGTAACACTAAAAGTTAACCACCACAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR CAA 90 bp TTTCAAAGAAGCTTCTGCCATCGGCTGGTATCGCTTCTCCTGAGTTaGGGAGGTGGTTGTTGTTCAGCCTTACTTTCCCATAGCTTCCAT +
Preference number: 2 (lower is better)
Translates to: FQRSFCHRLVSLLLS*GGGCCSALLSHSFH
Trigger: ATGGAAGCTATGGGAAAGTAAGGCTGAACAACAACCACCTCCCAAACTCAGGAGAAGCGATACCAGCCGATGGCAGAAGCTTCTTTGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR GCA 90 bp GAAGTTTTCTTAGAACAAACACCCTCCTCTGCAGTTTCCTCTTGCTCAATACCAGTGGTAGATAATGGGTaGGAGGAGCCCGTAGCACTG +
Preference number: 2 (lower is better)
Translates to: EVFLEQTPSSAVSSCSIPVVDNG*EEPVAL
Trigger: CAGTGCTACGGGCTCCTCGCACCCATTATCTACCAC...TGGTATTGAGCAAGAGGAAACTGCAGAGGAGGGTGTTTGTTCTAAGAAAACTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR CCA 90 bp TTTACACCATCAGTCTCTAGAGCAGAGTGTCACAGTGAGCTAGCTAAGGAAAGACAAATGACAGAGCATTaGGGCTCTCAGAGTAGGGGG +
Preference number: 2 (lower is better)
Translates to: FTPSVSRAECHSELAKERQMTEH*GSQSRG
Trigger: CCCCCTACTCTGAGAGCCCCAATGCTCTGTCATTTG...TCTTTCCTTAGCTAGCTCACTGTGACACTCTGCTCTAGAGACTGATGGTGTAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR-3UTR GCA 90 bp AACAAACACCCTCCTCTGCAGTTTCCTCTTGCTCAATACCAAAAAGAGACCTGCCCCATAGCTTCCATCTaGTTTGCAACCCAAGATGCA +
Preference number: 2 (lower is better)
Translates to: NKHPPLQFPLAQYQKETCPIASI*FATQDA
Trigger: TGCATCTTGGGTTGCAAAGCAGATGGAAGCTATGGG...GCAGGTCTCTTTTTGGTATTGAGCAAGAGGAAACTGCAGAGGAGGGTGTTTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR GCA 90 bp ATTCTAGCGCTGTTAGTTAAGTCTGCCTCAGTAGAGATCAAGTGTGAGATTCAACACGGCTGTCTTCAGTaGAGATGCTGGTACCTCTGG +
Preference number: 2 (lower is better)
Translates to: ILALLVKSASVEIKCEIQHGCLQ*RCWYLW
Trigger: CCAGAGGTACCAGCATCTGCACTGAAGACAGCCGTG...TTGAATCTCACACTTGATCTCTACTGAGGCAGACTTAACTAACAGCGCTAGAAT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR-3UTR GCA 90 bp TCTCCTTTTCAAGAAGTCATAAACAGGGGCAGATATCTCCACCATGAGATGAAATCAGGCAGCAGCACCTaGTGTGGCTTCTTGGTTCTT +
Preference number: 2 (lower is better)
Translates to: SPFQEVINRGRYLHHEMKSGSST*CGFLVL
Trigger: AAGAACCAAGAAGCCACAGCAGGTGCTGCTGCCTGA...TTTCATCTCATGGTGGAGATATCTGCCCCTGTTTATGACTTCTTGAAAAGGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR CAA 90 bp AGCTGTTCATTTATCTTTTCAGGCAGCAGCACCTGCTGTGGCTTCTaGGTTCTTGAAGTTTTCTTAGAACAAACACCCTCCTCTGCAGTT +
Preference number: 2 (lower is better)
Translates to: SCSFIFSGSSTCCGF*VLEVFLEQTPSSAV
Trigger: AACTGCAGAGGAGGGTGTTTGTTCTAAGAAAACTTCAAGAACCAAGAAGCCACAGCAGGTGCTGCTGCCTGAAAAGATAAATGAACAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR CAA 90 bp TCCTCCGATCCGGATAGTTCAGCTGAGTTGATTTGCTTTGTCGTCTaGAGTAGATGTGTCTCCAACAAGGCCAGCTGTTCATTTATCTTT +
Preference number: 2 (lower is better)
Translates to: SSDPDSSAELICFVV*SRCVSNKASCSFIF
Trigger: AAAGATAAATGAACAGCTGGCCTTGTTGGAGACACATCTACTCAAGACGACAAAGCAAATCAACTCAGCTGAACTATCCGGATCGGAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR TCA 90 bp GTCTCAGATGATGCTACTTTCAAAGAAGTAAACCTCCTTTGTCTTGCTTTTATTGGGGGAATGAGGGGATaGCAGGGTGGGTATGGAGAA +
Preference number: 2 (lower is better)
Translates to: VSDDATFKEVNLLCLAFIGGMRG*QGGYGE
Trigger: TTCTCCATACCCACCCTGTCATCCCCTCATTCCCCC...AATAAAAGCAAGACAAAGGAGGTTTACTTCTTTGAAAGTAGCATCATCTGAGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR-3UTR TCA 90 bp GAAGTTTTCTTAGAACAAACACCCTCCTCTGCAGTTTCCTCTTGCTCAATACCAACCTGCACCCTGATGTaGTATCCAGCATCTTTTTCC +
Preference number: 2 (lower is better)
Translates to: EVFLEQTPSSAVSSCSIPTCTLM*YPASFS
Trigger: GGAAAAAGATGCTGGATATCACATCAGGGTGCAGGT...TGGTATTGAGCAAGAGGAAACTGCAGAGGAGGGTGTTTGTTCTAAGAAAACTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR CCA 90 bp GTCTCAGATGATGCTACTTTCAAAGAAGTAAACCTCCTTTGTCTTGCTTTTATTGAGGGGATGACAGGGTaGGTATGGAGAAGGAGAGGG +
Preference number: 2 (lower is better)
Translates to: VSDDATFKEVNLLCLAFIEGMTG*VWRRRG
Trigger: CCCTCTCCTTCTCCATACCCACCCTGTCATCCCCTC...AATAAAAGCAAGACAAAGGAGGTTTACTTCTTTGAAAGTAGCATCATCTGAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR-3UTR TCA 90 bp GTATTAGTCACTGTAGATATCCCAGTTCTAAGTATTTGCTTGTATCAGGCTCTTGGCAGACTGGGAAGCTaGAAGTGGAACAGAGGTTAC +
Preference number: 2 (lower is better)
Translates to: VLVTVDIPVLSICLYQALGRLGS*KWNRGY
Trigger: GTAACCTCTGTTCCACTTTCAGCTTCCCAGTCTGCC...AAGAGCCTGATACAAGCAAATACTTAGAACTGGGATATCTACAGTGACTAATAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR-3UTR GCA 90 bp AACAAACACCCTCCTCTGCAGTTTCCTCTTGCTCAATACCAAAAAGAGACCTGCTTGTCATGTAGAAGATaGAGCAAGCTATCATGTGCT +
Preference number: 2 (lower is better)
Translates to: NKHPPLQFPLAQYQKETCLSCRR*SKLSCA
Trigger: AGCACATGATAGCTTGCTGCATCTTCTACATGACAA...GCAGGTCTCTTTTTGGTATTGAGCAAGAGGAAACTGCAGAGGAGGGTGTTTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR TCA 90 bp GGAGACTTGAGTGCCCTCCTAGAAATGACAGTCTCCTTATATTTTATCCTTTTCAGAGAGGCGGGTAAATaGGAATTGGTTTCGTTGTCT +
Preference number: 2 (lower is better)
Translates to: GDLSALLEMTVSLYFILFREAGK*ELVSLS
Trigger: AGACAACGAAACCAATTCTCATTTACCCGCCTCTCT...GAAAAGGATAAAATATAAGGAGACTGTCATTTCTAGGAGGGCACTCAAGTCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR GCA 90 bp AACAGGGGCAGATATCTCCACCATGAGATGAAACTTCTCATCGTTCATGCATTTGTGGGGGAGGAATTCTaGTCTTCTTTATTTTTGAGC +
Preference number: 2 (lower is better)
Translates to: NRGRYLHHEMKLLIVHAFVGEEF*SSLFLS
Trigger: GCTCAAAAATAAAGAAGAGCAGAATTCCTCCCCCAC...AAATGCATGAACGATGAGAAGTTTCATCTCATGGTGGAGATATCTGCCCCTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR GCA 90 bp TTGCTTAAATTTCATGACTTCCTTCATGGCGCCCTTCACCGTCCAGTTCAAAACCAGCAAGCTATCATGTaGTGTATACTTTCAAAGCTG +
Preference number: 2 (lower is better)
Translates to: LLKFHDFLHGALHRPVQNQQAIM*CILSKL
Trigger: CAGCTTTGAAAGTATACAGCACATGATAGCTTGCTG...GTTTTGAACTGGACGGTGAAGGGCGCCATGAAGGAAGTCATGAAATTTAAGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR CAA 90 bp GCATTTGAGCATAATTTGTGTAAAGAATTCCAGGAATCTTGGTCTTaGCTTAAATTTCATGACTTCCTTCATGGCGCCCTTCACCGTCCA +
Preference number: 2 (lower is better)
Translates to: AFEHNLCKEFQESWS*LKFHDFLHGALHRP
Trigger: TGGACGGTGAAGGGCGCCATGAAGGAAGTCATGAAATTTAAGCAAAGACCAAGATTCCTGGAATTCTTTACACAAATTATGCTCAAATGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR GCA 90 bp CATAATCTATCCTCATATAGTGACCTATCCTCAGAGGCTAGAAGGATGCCTAGCGCAATTATGAAGAGTTaGTGTGCTAGTGCTGTTTTA +
Preference number: 2 (lower is better)
Translates to: HNLSSYSDLSSEARRMPSAIMKS*CASAVL
Trigger: TAAAACAGCACTAGCACAGCAACTCTTCATAATTGC...GCTAGGCATCCTTCTAGCCTCTGAGGATAGGTCACTATATGAGGATAGATTATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR-3UTR CCA 90 bp GGAGACTTGAGTGCCCTCCTAGAAATGACAGTCTCCTTATATTTTATCCTTTTCCGGGTAAATGAGAATTaGTTTCGTTGTCTCCCCAAT +
Preference number: 2 (lower is better)
Translates to: GDLSALLEMTVSLYFILFRVNEN*FRCLPN
Trigger: ATTGGGGAGACAACGAAACCAATTCTCATTTACCCG...GAAAAGGATAAAATATAAGGAGACTGTCATTTCTAGGAGGGCACTCAAGTCTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR CCA 90 bp AAGTATCCACACACAGTGAGGACAAGGATAACATCAGTTACACTTAGATACCCCACTAGGATTTCAACTTaGGTCCACCAGAAAACAGAA +
Preference number: 2 (lower is better)
Translates to: KYPHTVRTRITSVTLRYPTRIST*VHQKTE
Trigger: TTCTGTTTTCTGGTGGACCCAAGTTGAAATCCTAGT...GGGGTATCTAAGTGTAACTGATGTTATCCTTGTCCTCACTGTGTGTGGATACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR-3UTR TCA 90 bp AGGATTTCAACTTGGGTCCACCAGAAAACAGAACTCATAGACACTGTTCATTATTTAGTTACCTTGTTCTaGGGCTTCAGGCATCTTCAT +
Preference number: 2 (lower is better)
Translates to: RISTWVHQKTELIDTVHYLVTLF*GFRHLH
Trigger: ATGAAGATGCCTGAAGCCTCAGAACAAGGTAACTAA...ATAATGAACAGTGTCTATGAGTTCTGTTTTCTGGTGGACCCAAGTTGAAATCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR-3UTR TCA 90 bp TATCACTTTGCTTATCCAAGATTTTACTCAGTGGGGATAAGCTTACAAATTTGCAAGCACACTTCTGAGTaGCCTGTGAAGGGGTTTCTA +
Preference number: 2 (lower is better)
Translates to: YHFAYPRFYSVGISLQICKHTSE*PVKGFL
Trigger: TAGAAACCCCTTCACAGGTCACTCAGAAGTGTGCTT...GCAAATTTGTAAGCTTATCCCCACTGAGTAAAATCTTGGATAAGCAAAGTGATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR-3UTR GCA 90 bp TTTACACCATCAGTCTCTAGAGCAGAGTGTCACAGTGAGCTAGCTAAGGAAAGATTTGATACAACTCTGTaGATTAAAGCAATCAGCTTC +
Preference number: 2 (lower is better)
Translates to: FTPSVSRAECHSELAKERFDTTL*IKAISF
Trigger: GAAGCTGATTGCTTTAATGCACAGAGTTGTATCAAA...TCTTTCCTTAGCTAGCTCACTGTGACACTCTGCTCTAGAGACTGATGGTGTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR-3UTR TCA 90 bp GGAGACTTGAGTGCCCTCCTAGAAATGACAGTCTCCTTATATTTTATCCTTTTCTGGCTTCTTGGTTCTTaGAGTTTTCTTAGAACAAAC +
Preference number: 2 (lower is better)
Translates to: GDLSALLEMTVSLYFILFWLLGS*SFLRTN
Trigger: GTTTGTTCTAAGAAAACTTCAAGAACCAAGAAGCCA...GAAAAGGATAAAATATAAGGAGACTGTCATTTCTAGGAGGGCACTCAAGTCTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR CCA 90 bp GACTTGAGTGCCCTCCTAGAAATGACAGTCTCCTTATATTTTATCCTTTTCACTCATTTTATCAAGATCTaGATGACAGGTACCAAGACG +
Preference number: 2 (lower is better)
Translates to: DLSALLEMTVSLYFILFTHFIKI*MTGTKT
Trigger: CGTCTTGGTACCTGTCATCCAGATCTTGATAAAATG...AGTGAAAAGGATAAAATATAAGGAGACTGTCATTTCTAGGAGGGCACTCAAGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR CCA 90 bp CTGAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTAATTCTTTAAAGATATaGAGCAAGCAGGTGGTGAAG +
Preference number: 2 (lower is better)
Translates to: LRCTPHFSTSLTLVHTSSNSLKI*SKQVVK
Trigger: CTTCACCACCTGCTTGCTCCATATCTTTAAAGAATT...ACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
3UTR-3UTR CCA 90 bp AGGATTTCAACTTGGGTCCACCAGAAAACAGAACTCATAGACACTGTTCATTATACTGACCACTTGTGGTaGTTAACTTTTAGTGTTACT +
Preference number: 2 (lower is better)
Translates to: RISTWVHQKTELIDTVHYTDHLW*LTFSVT
Trigger: AGTAACACTAAAAGTTAACCACCACAAGTGGTCAGT...ATAATGAACAGTGTCTATGAGTTCTGTTTTCTGGTGGACCCAAGTTGAAATCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR-3UTR CCA 90 bp TTGTCCCCTTGCTCTTCTAAGTTTATTTGTGACAGCCTTTGCACAGCAGTATTTATTACTGACCACTTGTaGTGGTTAACTTTTAGTGTT +
Preference number: 2 (lower is better)
Translates to: LSPCSSKFICDSLCTAVFITDHL*WLTFSV
Trigger: AACACTAAAAGTTAACCACCACAAGTGGTCAGTAAT...AAATACTGCTGTGCAAAGGCTGTCACAAATAAACTTAGAAGAGCAAGGGGACAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR-3UTR TCA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAATTTCTAACAAAAAGATaGGTAACAATGAAGTCCCCC +
Preference number: 2 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYEFLTKR*VTMKSP
Trigger: GGGGGACTTCATTGTTACTCATCTTTTTGTTAGAAA...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
3UTR-3UTR CCA 90 bp GTCTCAGATGATGCTACTTTCAAAGAAGTAAACCTCCTTTGTCTTGCTTTTATTTGCATGTTGTCTTTATaGGTGAGAGGTTTTCCAGAA +
Preference number: 2 (lower is better)
Translates to: VSDDATFKEVNLLCLAFICMLSL*VRGFPE
Trigger: TTCTGGAAAACCTCTCACCCATAAAGACAACATGCA...AATAAAAGCAAGACAAAGGAGGTTTACTTCTTTGAAAGTAGCATCATCTGAGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR TCA 72 bp GAGATGAACGGCGCGGGCTTCAGGGTCACAGAGCAGTaGGTCCGGGCCAGCAGGATGGGTGGGGGAGGAATT +
Preference number: 3 (lower is better)
Translates to: EMNGAGFRVTEQ*VRASRMGGGGI
Trigger: AATTCCTCCCCCACCCATCCTGCTGGCCCGGACTCACTGCTCTGTGACCCTGAAGCCCGCGCCGTTCATCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR TCA 72 bp CAGATTCTGCAGCCCTTCAGTTTGCTTGCGCTCTGGTaGCTGCAGGGAGCTCTCAGCCCTGCAACCTCCGGC +
Preference number: 3 (lower is better)
Translates to: QILQPFSLLALW*LQGALSPATSG
Trigger: GCCGGAGGTTGCAGGGCTGAGAGCTCCCTGCAGTCACCAGAGCGCAAGCAAACTGAAGGGCTGCAGAATCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR GCA 72 bp GGGAGTGCTCCTCCTCTTCCAGGGGACTCACCTGTATaGTGGCCTGTATCTCTGCAGGGCGATTGCTGCCAG +
Preference number: 3 (lower is better)
Translates to: GSAPPLPGDSPV*WPVSLQGDCCQ
Trigger: CTGGCAGCAATCGCCCTGCAGAGATACAGGCCAGCATACAGGTGAGTCCCCTGGAAGAGGAGGAGCACTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR GCA 72 bp GGGCAGGAGCCACTTTCCCCACACGGCTGTCTTCAGTaGAGATGCTGGTACCTCTGGACATCTGGCCCCAGA +
Preference number: 3 (lower is better)
Translates to: GQEPLSPHGCLQ*RCWYLWTSGPR
Trigger: TCTGGGGCCAGATGTCCAGAGGTACCAGCATCTGCACTGAAGACAGCCGTGTGGGGAAAGTGGCTCCTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR-3UTR CAA 90 bp TCCAGGGGACTCACCTGTATGCTGGCCTGTATCTCTGCAGGGCGATTGCTGCCATCCGACAGCAGGGAGTaGACCTTCTCCTCTGCCTCC +
Preference number: 3 (lower is better)
Translates to: SRGLTCMLACISAGRLLPSDSRE*TFSSAS
Trigger: GGAGGCAGAGGAGAAGGTCAACTCCCTGCTGTCGGA...TGGCAGCAATCGCCCTGCAGAGATACAGGCCAGCATACAGGTGAGTCCCCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR GCA 72 bp TTCCAGGGGACTCACCTGTATGCTGGCCTGTATCTCTaGAGGGCGATTGCTGCCAGGTGTAGCCTAGCCTCC +
Preference number: 3 (lower is better)
Translates to: FQGTHLYAGLYL*RAIAARCSLAS
Trigger: GGAGGCTAGGCTACACCTGGCAGCAATCGCCCTGCAGAGATACAGGCCAGCATACAGGTGAGTCCCCTGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR GCA 72 bp TGGACATCTGGCCCCAGATTCTGCAGCCCTTCAGTTTaGTTGCGCTCTGGTGACTGCAGGGAGCTCTCAGCC +
Preference number: 3 (lower is better)
Translates to: WTSGPRFCSPSV*LRSGDCRELSA
Trigger: GGCTGAGAGCTCCCTGCAGTCACCAGAGCGCAAGCAAACTGAAGGGCTGCAGAATCTGGGGCCAGATGTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR CCA 72 bp AGTGCTCCTCCTCTTCCAGGGGACTCACCTGTATGCTaGCCTGTATCTCTGCAGGGCGATTGCTGCCAGGTG +
Preference number: 3 (lower is better)
Translates to: SAPPLPGDSPVC*PVSLQGDCCQV
Trigger: CACCTGGCAGCAATCGCCCTGCAGAGATACAGGCCAGCATACAGGTGAGTCCCCTGGAAGAGGAGGAGCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR TCA 72 bp GCAACCCAAGATGCAGTACCAGGACGCCTTAACCTCTaGGATGAACGGCGCGGGCTTCAGGGTCACAGAGCA +
Preference number: 3 (lower is better)
Translates to: ATQDAVPGRLNL*DERRGLQGHRA
Trigger: TGCTCTGTGACCCTGAAGCCCGCGCCGTTCATCTCAGAGGTTAAGGCGTCCTGGTACTGCATCTTGGGTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR GCA 72 bp GAGCCACTTTCCCCACACGGCTGTCTTCAGTGCAGATaGTGGTACCTCTGGACATCTGGCCCCAGATTCTGC +
Preference number: 3 (lower is better)
Translates to: EPLSPHGCLQCR*WYLWTSGPRFC
Trigger: GCAGAATCTGGGGCCAGATGTCCAGAGGTACCAGCATCTGCACTGAAGACAGCCGTGTGGGGAAAGTGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR CCA 72 bp CCACTTTCCCCACACGGCTGTCTTCAGTGCAGATGCTaGTACCTCTGGACATCTGGCCCCAGATTCTGCAGC +
Preference number: 3 (lower is better)
Translates to: PLSPHGCLQCRC*YLWTSGPRFCS
Trigger: GCTGCAGAATCTGGGGCCAGATGTCCAGAGGTACCAGCATCTGCACTGAAGACAGCCGTGTGGGGAAAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR CCA 72 bp TTCAGGCATCTTCATCTGAGAAGCTGTTGGGGTGTCTaGCTCTCCAGCATACAGCCAGCCACTGTGGGACCA +
Preference number: 3 (lower is better)
Translates to: FRHLHLRSCWGV*LSSIQPATVGP
Trigger: TGGTCCCACAGTGGCTGGCTGTATGCTGGAGAGCCAGACACCCCAACAGCTTCTCAGATGAAGATGCCTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR TCA 72 bp ACAAATGAGAATGAGTGCCTTCCCACCACTCACAAATaGCAGAGCATTGGGGCTCTCAGAGTAGGGGGCCAG +
Preference number: 3 (lower is better)
Translates to: TNENECLPTTHK*QSIGALRVGGQ
Trigger: CTGGCCCCCTACTCTGAGAGCCCCAATGCTCTGTCATTTGTGAGTGGTGGGAAGGCACTCATTCTCATTTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR TCA 72 bp ACCTCCGGCTGGGCTGTGTCATTAGTTACCTTGTTCTaGGGCTTCAGGCATCTTCATCTGAGAAGCTGTTGG +
Preference number: 3 (lower is better)
Translates to: TSGWAVSLVTLF*GFRHLHLRSCW
Trigger: CCAACAGCTTCTCAGATGAAGATGCCTGAAGCCTCAGAACAAGGTAACTAATGACACAGCCCAGCCGGAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR CCA 72 bp GTTACTTCTCATCATCAGCTTCATTCGGCCGCGAGATaGCGAGGAGCTAAGTCAAGCACACTTCTGAGTGAC +
Preference number: 3 (lower is better)
Translates to: VTSHHQLHSAAR*RGAKSSTLLSD
Trigger: GTCACTCAGAAGTGTGCTTGACTTAGCTCCTCGCCATCTCGCGGCCGAATGAAGCTGATGATGAGAAGTAAC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR CCA 72 bp AGCGGTGACAGCAGAGAGAGGCGGGTAAATGAGAATTaGTTTCGTTGTCTCCCCAATAGCATCACCAATGAG +
Preference number: 3 (lower is better)
Translates to: SGDSRERRVNEN*FRCLPNSITNE
Trigger: CTCATTGGTGATGCTATTGGGGAGACAACGAAACCAATTCTCATTTACCCGCCTCTCTCTGCTGTCACCGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR CCA 72 bp GGTAGATCTTATGCCTCCTATACCACTATGATCCCATaGTCCCATCCTGCACACTGGCCTAATTGCTACAGG +
Preference number: 3 (lower is better)
Translates to: GRSYASYTTMIP*SHPAHWPNCYR
Trigger: CCTGTAGCAATTAGGCCAGTGTGCAGGATGGGACCATGGGATCATAGTGGTATAGGAGGCATAAGATCTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR TCA 72 bp AAAGAAGCTTCTGCCATCGGCTGGTATCGCTTCTCCTaGGTTTGGGAGGTGGTTGTTGTTCAGCCTTACTTT +
Preference number: 3 (lower is better)
Translates to: KEASAIGWYRFS*VWEVVVVQPYF
Trigger: AAAGTAAGGCTGAACAACAACCACCTCCCAAACTCAGGAGAAGCGATACCAGCCGATGGCAGAAGCTTCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR GCA 72 bp TGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATaGTCTCTTACTTCATCAGGCCTGAGATGCACACCT +
Preference number: 3 (lower is better)
Translates to: CSLSSYQSNVTP*SLTSSGLRCTP
Trigger: AGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
3UTR-3UTR CAA 90 bp TTGGTTCTTGAAGTTTTCTTAGAACAAACACCCTCCTCTGCAGTTTCCTCTTGCGCGAAGTTGGCGTCATaGAGGAAGTTGCTGAGCTCC +
Preference number: 3 (lower is better)
Translates to: LVLEVFLEQTPSSAVSSCAKLAS*RKLLSS
Trigger: GGAGCTCAGCAACTTCCTCAATGACGCCAACTTCGC...GCAAGAGGAAACTGCAGAGGAGGGTGTTTGTTCTAAGAAAACTTCAAGAACCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR CAA 90 bp GTCATAAACAGGGGCAGATATCTCCACCATGAGATGAAACTTCTCATCGTTCATGCGTCATTGAGGAAGTaGCTGAGCTCCAGAGCTACT +
Preference number: 3 (lower is better)
Translates to: VINRGRYLHHEMKLLIVHASLRK*LSSRAT
Trigger: AGTAGCTCTGGAGCTCAGCAACTTCCTCAATGACGC...ATGAACGATGAGAAGTTTCATCTCATGGTGGAGATATCTGCCCCTGTTTATGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR CAA 90 bp GCCCTTCACCGTCCAGTTCAAAACTATAGGGTAAAGGAAGATAGGGTCCTCCGAGATAGTTCAGCTGAGTaGATTTGCTTTGTCGTCTTG +
Preference number: 3 (lower is better)
Translates to: ALHRPVQNYRVKEDRVLRDSSAE*ICFVVL
Trigger: CAAGACGACAAAGCAAATCAACTCAGCTGAACTATC...TCGGAGGACCCTATCTTCCTTTACCCTATAGTTTTGAACTGGACGGTGAAGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR GCA 72 bp ACTAGCACATTCTCACACTCCACCAGTCTAGCGACTTaGTGGGCGGGGAAAATCTCGTTGCCTTTAATATTA +
Preference number: 3 (lower is better)
Translates to: TSTFSHSTSLAT*WAGKISLPLIL
Trigger: TAATATTAAAGGCAACGAGATTTTCCCCGCCCAGCAAGTCGCTAGACTGGTGGAGTGTGAGAATGTGCTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR CCA 72 bp AGCACATTCTCACACTCCACCAGTCTAGCGACTTGCTaGGCGGGGAAAATCTCGTTGCCTTTAATATTATCA +
Preference number: 3 (lower is better)
Translates to: STFSHSTSLATC*AGKISLPLILS
Trigger: TGATAATATTAAAGGCAACGAGATTTTCCCCGCCCAGCAAGTCGCTAGACTGGTGGAGTGTGAGAATGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR GCA 72 bp TGGGGCAAGCCTCTGTTTATTAGCTCTTCAAGTGCCTaGATGTTGTCTTTATGGGTGAGAGGTTTTCCAGAA +
Preference number: 3 (lower is better)
Translates to: WGKPLFISSSSA*MLSLWVRGFPE
Trigger: TTCTGGAAAACCTCTCACCCATAAAGACAACATGCAGGCACTTGAAGAGCTAATAAACAGAGGCTTGCCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR GCA 72 bp TTCTTAGAACAAACACCCTCCTCTGCAGTTTCCTCTTaGTCAATACCAAAAAGAGACCTGCACCCTGATGTG +
Preference number: 3 (lower is better)
Translates to: FLEQTPSSAVSS*SIPKRDLHPDV
Trigger: CACATCAGGGTGCAGGTCTCTTTTTGGTATTGAGCAAGAGGAAACTGCAGAGGAGGGTGTTTGTTCTAAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR CCA 72 bp GTCATTAACCAAACCACTATGTGTCTGAGGACTTCGTaGTTCTGCTGTGTTCATCATCAGTTGCGTGATGCT +
Preference number: 3 (lower is better)
Translates to: VINQTTMCLRTS*FCCVHHQLRDA
Trigger: AGCATCACGCAACTGATGATGAACACAGCAGAACCACGAAGTCCTCAGACACATAGTGGTTTGGTTAATGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR-3UTR CAA 90 bp TGTGCATTCGTTTCCAAACCTTTAATTTCAAAGAAGCTTCTGCCATCGGCTGGTTTTGGGAGGTGGTTGTaGTTCAGCCTTACTTTCCCA +
Preference number: 3 (lower is better)
Translates to: CAFVSKPLISKKLLPSAGFGRWL*FSLTFP
Trigger: TGGGAAAGTAAGGCTGAACAACAACCACCTCCCAAA...ACCAGCCGATGGCAGAAGCTTCTTTGAAATTAAAGGTTTGGAAACGAATGCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR CAA 90 bp AACAGGGGCAGATATCTCCACCATGAGATGAAACTTCTCATCGTTCATGCATTTGAGTTTGGGAGGTGGTaGTTGTTCAGCCTTACTTTC +
Preference number: 3 (lower is better)
Translates to: NRGRYLHHEMKLLIVHAFEFGRW*LFSLTF
Trigger: GAAAGTAAGGCTGAACAACAACCACCTCCCAAACTC...AAATGCATGAACGATGAGAAGTTTCATCTCATGGTGGAGATATCTGCCCCTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR TCA 72 bp TTAGACGGTCAGTCCAGCCCTCAACACTGTCTCAGATaGTGCTACTTTCAAAGAAGTAAACCTCCTTTGTCT +
Preference number: 3 (lower is better)
Translates to: LDGQSSPQHCLR*CYFQRSKPPLS
Trigger: AGACAAAGGAGGTTTACTTCTTTGAAAGTAGCATCATCTGAGACAGTGTTGAGGGCTGGACTGACCGTCTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR GCA 72 bp GCCAGCTGTTCATTTATCTTTTCAGGCAGCAGCACCTaGTGTGGCTTCTTGGTTCTTGAAGTTTTCTTAGAA +
Preference number: 3 (lower is better)
Translates to: ASCSFIFSGSST*CGFLVLEVFLE
Trigger: TTCTAAGAAAACTTCAAGAACCAAGAAGCCACAGCAGGTGCTGCTGCCTGAAAAGATAAATGAACAGCTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR CAA 90 bp GACTTGAGTGCCCTCCTAGAAATGACAGTCTCCTTATATTTTATCCTTTTCACTTCGCTTCTCCTGAGTTaGGGAGGTGGTTGTTGTTCA +
Preference number: 3 (lower is better)
Translates to: DLSALLEMTVSLYFILFTSLLLS*GGGCCS
Trigger: TGAACAACAACCACCTCCCAAACTCAGGAGAAGCGA...AGTGAAAAGGATAAAATATAAGGAGACTGTCATTTCTAGGAGGGCACTCAAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR TCA 72 bp CAGTTGCGTGATGCTGACAGAGTATTTCTGCAATTATaGAGAGTTGCTGTGCTAGTGCTGTTTTATACGTGG +
Preference number: 3 (lower is better)
Translates to: QLRDADRVFLQL*RVAVLVLFYTW
Trigger: CCACGTATAAAACAGCACTAGCACAGCAACTCTTCATAATTGCAGAAATACTCTGTCAGCATCACGCAACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR TCA 72 bp CAAATGTCACTCCATGCTCTCTTACTTCATCAGGCCTaGGATGCACACCTCATTTTTCTACTTCACTCACTT +
Preference number: 3 (lower is better)
Translates to: QMSLHALLLHQA*DAHLIFLLHSL
Trigger: AAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGTGACATTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
3UTR GCA 72 bp GTCACTCCATGCTCTCTTACTTCATCAGGCCTGAGATaGACACCTCATTTTTCTACTTCACTCACTTTAGTA +
Preference number: 3 (lower is better)
Translates to: VTPCSLTSSGLR*TPHFSTSLTLV
Trigger: TACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGTGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
3UTR TCA 72 bp GACACGAAATCAAACCTAGTTGTCACTGATATTCTATaGTTGTCACCAAGAAGGTCTGCATGGTCTTTGTCC +
Preference number: 3 (lower is better)
Translates to: DTKSNLVVTDIL*LSPRRSAWSLS
Trigger: GGACAAAGACCATGCAGACCTTCTTGGTGACAATCATAGAATATCAGTGACAACTAGGTTTGATTTCGTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR CCA 72 bp ACACCACTATTAACACGTGACACTAGGATTTCAACTTaGGTCCACCAGAAAACAGAACTCATAGACACTGTT +
Preference number: 3 (lower is better)
Translates to: TPLLTRDTRIST*VHQKTELIDTV
Trigger: AACAGTGTCTATGAGTTCTGTTTTCTGGTGGACCCAAGTTGAAATCCTAGTGTCACGTGTTAATAGTGGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR-3UTR CAA 90 bp GTCATAAACAGGGGCAGATATCTCCACCATGAGATGAAACTTCTCATCGTTCATTGCTCTTCTTTATTTTaGAGCTCCCCAAGAACTTCT +
Preference number: 3 (lower is better)
Translates to: VINRGRYLHHEMKLLIVHCSSLF*SSPRTS
Trigger: AGAAGTTCTTGGGGAGCTCAAAAATAAAGAAGAGCA...ATGAACGATGAGAAGTTTCATCTCATGGTGGAGATATCTGCCCCTGTTTATGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR CAA 90 bp GTCTCAGATGATGCTACTTTCAAAGAAGTAAACCTCCTTTGTCTTGCTTTTATTTCAAGTGCCTGCATGTaGTCTTTATGGGTGAGAGGT +
Preference number: 3 (lower is better)
Translates to: VSDDATFKEVNLLCLAFISSACM*SLWVRG
Trigger: ACCTCTCACCCATAAAGACAACATGCAGGCACTTGA...AATAAAAGCAAGACAAAGGAGGTTTACTTCTTTGAAAGTAGCATCATCTGAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR-3UTR CAA 90 bp GACTTGAGTGCCCTCCTAGAAATGACAGTCTCCTTATATTTTATCCTTTTCACTACCTGCTGTGGCTTCTaGGTTCTTGAAGTTTTCTTA +
Preference number: 3 (lower is better)
Translates to: DLSALLEMTVSLYFILFTTCCGF*VLEVFL
Trigger: TAAGAAAACTTCAAGAACCAAGAAGCCACAGCAGGT...AGTGAAAAGGATAAAATATAAGGAGACTGTCATTTCTAGGAGGGCACTCAAGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR CAA 90 bp TTGTCCCCTTGCTCTTCTAAGTTTATTTGTGACAGCCTTTGCACAGCAGTATTTCCTCTTCTTCTAGCTTaGAGACCAAAAGACCAAATT +
Preference number: 3 (lower is better)
Translates to: LSPCSSKFICDSLCTAVFPLLLA*RPKDQI
Trigger: AATTTGGTCTTTTGGTCTCAAAGCTAGAAGAAGAGG...AAATACTGCTGTGCAAAGGCTGTCACAAATAAACTTAGAAGAGCAAGGGGACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR GCA 72 bp GCTTCAGGCTTGATACACAGCAGTCTACCACTCAACTaGATTAAACCAGAAGTACACAATCTTTACATATAC +
Preference number: 3 (lower is better)
Translates to: ASGLIHSSLPLN*IKPEVHNLYIY
Trigger: GTATATGTAAAGATTGTGTACTTCTGGTTTAATGCAGTTGAGTGGTAGACTGCTGTGTATCAAGCCTGAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR TCA 72 bp CCTCTCAGTAATAAATTGGTAGTACATTATTTTTGGTaGAGGATCGGGAATACAGTTGATTGTCGCAGCCAA +
Preference number: 3 (lower is better)
Translates to: PLSNKLVVHYFW*RIGNTVDCRSQ
Trigger: TTGGCTGCGACAATCAACTGTATTCCCGATCCTTCACCAAAAATAATGTACTACCAATTTATTACTGAGAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR GCA 72 bp GATCACTATGGCTTTAAACTTACTGGGAGACTTGAGTaGCCTCCTAGAAATGACAGTCTCCTTATATTTTAT +
Preference number: 3 (lower is better)
Translates to: DHYGFKLTGRLE*PPRNDSLLIFY
Trigger: ATAAAATATAAGGAGACTGTCATTTCTAGGAGGGCACTCAAGTCTCCCAGTAAGTTTAAAGCCATAGTGATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR-3UTR CAA 90 bp GACTTGAGTGCCCTCCTAGAAATGACAGTCTCCTTATATTTTATCCTTTTCACTCAGGAATCTTGGTCTTaGCTTAAATTTCATGACTTC +
Preference number: 3 (lower is better)
Translates to: DLSALLEMTVSLYFILFTQESWS*LKFHDF
Trigger: GAAGTCATGAAATTTAAGCAAAGACCAAGATTCCTG...AGTGAAAAGGATAAAATATAAGGAGACTGTCATTTCTAGGAGGGCACTCAAGTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR TCA 72 bp AGACTAAAATTCTTGCATAACAAGATCTCATATCAGTaGCAAAAATGTCTCAAAGAGCCAGGCATAGTGGTC +
Preference number: 3 (lower is better)
Translates to: RLKFLHNKISYQ*QKCLKEPGIVV
Trigger: GACCACTATGCCTGGCTCTTTGAGACATTTTTGTCACTGATATGAGATCTTGTTATGCAAGAATTTTAGTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR-3UTR CAA 90 bp GTCTCAGATGATGCTACTTTCAAAGAAGTAAACCTCCTTTGTCTTGCTTTTATTGGTAGTACATTATTTTaGGTGAAGGATCGGGAATAC +
Preference number: 3 (lower is better)
Translates to: VSDDATFKEVNLLCLAFIGSTLF*VKDREY
Trigger: GTATTCCCGATCCTTCACCAAAAATAATGTACTACC...AATAAAAGCAAGACAAAGGAGGTTTACTTCTTTGAAAGTAGCATCATCTGAGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR TCA 72 bp GTTGTCTTTATGGGTGAGAGGTTTTCCAGAATCGAATaGTTGAGTTATCATTCCATATCAGTATTCATCATC +
Preference number: 3 (lower is better)
Translates to: VVFMGERFSRIE*LSYHSISVFII
Trigger: GATGATGAATACTGATATGGAATGATAACTCAATCATTCGATTCTGGAAAACCTCTCACCCATAAAGACAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR CCA 72 bp AGTTGGCATCATTACTTCATTTTATATATGTATCACTaGATCACACCACTATTAACACGTGACACTAGGATT +
Preference number: 3 (lower is better)
Translates to: SWHHYFILYMYH*ITPLLTRDTRI
Trigger: AATCCTAGTGTCACGTGTTAATAGTGGTGTGATCCAGTGATACATATATAAAATGAAGTAATGATGCCAACT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
CDS-3UTR TCA 90 bp GCACCTGGGACAGCAAGCTACGGAGAAAGACCGGGTCTCACTGCAGGTCGCACCAAGATGGGCAGACGGTaGGCTTGCCAGATAAGTCAG +
Preference number: 4 (lower is better)
Translates to: APGTASYGERPGLTAGRTKMGRR*ACQISQ
Trigger: CTGACTTATCTGGCAAGCTCACCGTCTGCCCATCTT...GGTGCGACCTGCAGTGAGACCCGGTCTTTCTCCGTAGCTTGCTGTCCCAGGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
3UTR CAA 72 bp AATGGGTGCGAGGAGCCCGTAGCACTGGGTCACTGCTaGGAGGGCGAAGTTGGCGTCATTGAGGAAGTTGCT +
Preference number: 4 (lower is better)
Translates to: NGCEEPVALGHC*EGEVGVIEEVA
Trigger: AGCAACTTCCTCAATGACGCCAACTTCGCCCTCCAAGCAGTGACCCAGTGCTACGGGCTCCTCGCACCCATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
CDS-3UTR TCA 90 bp GCTCCAAAACAGAGGACAGATAGAGGGGCCTGTGGCACTGGTGCTCTGTCTCCGCTTCACTGTAGTCTTTaGAACCAGGAGGTGAGGAGC +
Preference number: 4 (lower is better)
Translates to: APKQRTDRGACGTGALSPLHCSL*NQEVRS
Trigger: GCTCCTCACCTCCTGGTTTCAAAGACTACAGTGAAG...CGGAGACAGAGCACCAGTGCCACAGGCCCCTCTATCTGTCCTCTGTTTTGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR CAA 72 bp CTGTGGCACTGGTGCTCTGTCTCCGACAGCAGGGAGTaGACCTTCTCCTCTGCCTCCATCAGTAAAATGGAC +
Preference number: 4 (lower is better)
Translates to: LWHWCSVSDSRE*TFSSASISKMD
Trigger: GTCCATTTTACTGATGGAGGCAGAGGAGAAGGTCAACTCCCTGCTGTCGGAGACAGAGCACCAGTGCCACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR CAA 72 bp GTTCTGAGGCTTCAGGCATCTTCATCTGAGAAGCTGTaGGGGTGTCTGGCTCTCCAGCATACAGCCAGCCAC +
Preference number: 4 (lower is better)
Translates to: VLRLQASSSEKL*GCLALQHTASH
Trigger: GTGGCTGGCTGTATGCTGGAGAGCCAGACACCCCAACAGCTTCTCAGATGAAGATGCCTGAAGCCTCAGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
CDS-3UTR TCA 90 bp GTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCCAGCAGAGGTGCTCCTaGGGGAGAGCCACCTGCATG +
Preference number: 4 (lower is better)
Translates to: VKKPAPSPVTNQMSLHALQQRCS*GRATCM
Trigger: CATGCAGGTGGCTCTCCCTCAGGAGCACCTCTGCTG...GAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp GTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCCGCACGCCGAGCAAATaGCTCCCCGTGGATGCCATC +
Preference number: 4 (lower is better)
Translates to: VKKPAPSPVTNQMSLHALRTPSK*LPVDAI
Trigger: GATGGCATCCACGGGGAGGCATTTGCTCGGCGTGCG...GAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp TTTACACCATCAGTCTCTAGAGCAGAGTGTCACAGTGAGCTAGCTAAGGAAAGACAGGAGGTGAGGAGCTaGTGGGGGCACCAGGGAGGG +
Preference number: 4 (lower is better)
Translates to: FTPSVSRAECHSELAKERQEVRS*WGHQGG
Trigger: CCCTCCCTGGTGCCCCCAGCAGCTCCTCACCTCCTG...TCTTTCCTTAGCTAGCTCACTGTGACACTCTGCTCTAGAGACTGATGGTGTAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR GCA 90 bp ATGCTAGGTGAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCAGGAGGTGAGGAGCTaGTGGGGGCACCAGGGAGGG +
Preference number: 4 (lower is better)
Translates to: MLGEQSKSLLPLQLPIKCQEVRS*WGHQGG
Trigger: CCCTCCCTGGTGCCCCCAGCAGCTCCTCACCTCCTG...ACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTCACCTAGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp GAGCCCGTAGCACTGGGTCACTGCTTGGAGGGCGAAGTTGGCGTCATTGAGGAACGTCTTGAGAGTCCTTaGCATAGCAATGGTCAATCA +
Preference number: 4 (lower is better)
Translates to: EPVALGHCLEGEVGVIEERLESP*HSNGQS
Trigger: TGATTGACCATTGCTATGTCAAGGACTCTCAAGACG...TTCCTCAATGACGCCAACTTCGCCCTCCAAGCAGTGACCCAGTGCTACGGGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
CDS-3UTR TCA 90 bp TCCAGGGGACTCACCTGTATGCTGGCCTGTATCTCTGCAGGGCGATTGCTGCCAGTACGGAGCAGACTCTaGAAAAGCAATGCAGACAAT +
Preference number: 4 (lower is better)
Translates to: SRGLTCMLACISAGRLLPVRSRL*KSNADN
Trigger: ATTGTCTGCATTGCTTTTTCAGAGTCTGCTCCGTAC...TGGCAGCAATCGCCCTGCAGAGATACAGGCCAGCATACAGGTGAGTCCCCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR TCA 90 bp GCTCCAAAACAGAGGACAGATAGAGGGGCCTGTGGCACTGGTGCTCTGTCTCCGACTTTAAGGCTCCTTTaGTTGCTGGTTTGGAGAACA +
Preference number: 4 (lower is better)
Translates to: APKQRTDRGACGTGALSPTLRLL*LLVWRT
Trigger: TGTTCTCCAAACCAGCAATCAAAGGAGCCTTAAAGT...CGGAGACAGAGCACCAGTGCCACAGGCCCCTCTATCTGTCCTCTGTTTTGGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR CCA 90 bp GTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCGGCCAGCAGGATGGGTaGGGGAGGAATTCTGCTCTT +
Preference number: 4 (lower is better)
Translates to: VKKPAPSPVTNQMSLHALGQQDG*GRNSAL
Trigger: AAGAGCAGAATTCCTCCCCCACCCATCCTGCTGGCC...GAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp ATGCTAGGTGAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTTCCGGGCCAGCAGGATaGGTGGGGGAGGAATTCTGC +
Preference number: 4 (lower is better)
Translates to: MLGEQSKSLLPLQLPIKCSGPAG*VGEEFC
Trigger: GCAGAATTCCTCCCCCACCCATCCTGCTGGCCCGGA...ACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTCACCTAGCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp AGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCGCGCTATCTTCGCTGTaGTCATCGCCGCTTGCAAAC +
Preference number: 4 (lower is better)
Translates to: SLLPLQLPIKCHSMLSYFALSSL*SSPLAN
Trigger: GTTTGCAAGCGGCGATGATCACAGCGAAGATAGCGC...GAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp TGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCACTCCCGACAGCAGGGAGTTaGCCTTCTCCTCTGCCTCCA +
Preference number: 4 (lower is better)
Translates to: CSLTSSGLRCTPHFSTSLPTAGS*PSPLPP
Trigger: TGGAGGCAGAGGAGAAGGTCAACTCCCTGCTGTCGG...GAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp GCTCCAAAACAGAGGACAGATAGAGGGGCCTGTGGCACTGGTGCTCTGTCTCCGGCAAACACCCCCAGATaGCAAATTTCGATAGAAATT +
Preference number: 4 (lower is better)
Translates to: APKQRTDRGACGTGALSPANTPR*QISIEI
Trigger: AATTTCTATCGAAATTTGGCATCTGGGGGTGTTTGC...CGGAGACAGAGCACCAGTGCCACAGGCCCCTCTATCTGTCCTCTGTTTTGGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR CCA 90 bp AGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCGCAAGAGGCCAGGAGTaGGTTTTTACTGTCCAGGGG +
Preference number: 4 (lower is better)
Translates to: SLLPLQLPIKCHSMLSYFARGQE*VFTVQG
Trigger: CCCCTGGACAGTAAAAACCCACTCCTGGCCTCTTGC...GAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp TCCAACATAGACCCAGATCTACAAGATTCCAAAGCTAGTACAATAATTCTCTGCGAGGTGAGGAGCTGCTaGGGGCACCAGGGAGGGAGG +
Preference number: 4 (lower is better)
Translates to: SNIDPDLQDSKASTIILCEVRSC*GHQGGR
Trigger: CCTCCCTCCCTGGTGCCCCCAGCAGCTCCTCACCTC...GCAGAGAATTATTGTACTAGCTTTGGAATCTTGTAGATCTGGGTCTATGTTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp GAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGGGCAGTGCTGTATGCTaGCCTGTATCTCTGCAGGGC +
Preference number: 4 (lower is better)
Translates to: EQSKSLLPLQLPIKCHSMGSAVC*PVSLQG
Trigger: GCCCTGCAGAGATACAGGCCAGCATACAGCACTGCC...CATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
3UTR CAA 72 bp AGCTTCTGCCATCGGCTGGTATCGCTTCTCCTGAGTTaGGGAGGTGGTTGTTGTTCAGCCTTACTTTCCCAT +
Preference number: 4 (lower is better)
Translates to: SFCHRLVSLLLS*GGGCCSALLSH
Trigger: ATGGGAAAGTAAGGCTGAACAACAACCACCTCCCAAACTCAGGAGAAGCGATACCAGCCGATGGCAGAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
CDS-3UTR TCA 90 bp ACTCCATGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCCATGTCAGGTACCTaGTGGACAGGAGCGGGACAG +
Preference number: 4 (lower is better)
Translates to: TPCSLTSSGLRCTPHFSTSMSGT*WTGAGQ
Trigger: CTGTCCCGCTCCTGTCCATCAGGTACCTGACATGGA...AGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp GCTGCCAGGTGTAGCCTAGCCTCCACCATGATCTCCAGCTCCAAAACAGAGGACGCACATCTGGTTTTCTaGAGATATCATCAAGAGCTT +
Preference number: 4 (lower is better)
Translates to: AARCSLASTMISSSKTEDAHLVF*RYHQEL
Trigger: AAGCTCTTGATGATATCTTCAGAAAACCAGATGTGC...GTCCTCTGTTTTGGAGCTGGAGATCATGGTGGAGGCTAGGCTACACCTGGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR GCA 90 bp ACTCCATGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTGGACAGAGGACTCCATaGACATGCTGGCCCACAGCA +
Preference number: 4 (lower is better)
Translates to: TPCSLTSSGLRCTPHFSTGQRTP*TCWPTA
Trigger: TGCTGTGGGCCAGCATGTGCATGGAGTCCTCTGTCC...AGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp AGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCGATGGCAGTGCTGTATaGTGGCCTGTATCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: SLLPLQLPIKCHSMLSYFDGSAV*WPVSLQ
Trigger: CTGCAGAGATACAGGCCAGCATACAGCACTGCCATC...GAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp GCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCATCAGTCCGGAAGAACACCCTaGGTAGGGACACAGACACAG +
Preference number: 4 (lower is better)
Translates to: APSPVTNQMSLHALLLHQSGRTP*VGTQTQ
Trigger: CTGTGTCTGTGTCCCTACCCAGGGTGTTCTTCCGGA...CTGATGAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp GAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGAAGATGGGCAGACGGTaGGCTTGCCAGATAAGTCAG +
Preference number: 4 (lower is better)
Translates to: EQSKSLLPLQLPIKCHSMKMGRR*ACQISQ
Trigger: CTGACTTATCTGGCAAGCTCACCGTCTGCCCATCTT...CATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp TCCAACATAGACCCAGATCTACAAGATTCCAAAGCTAGTACAATAATTCTCTGCTATCTGGCGCAAGCCTaGCGGGAGAGCTCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: SNIDPDLQDSKASTIILCYLAQA*RESSGP
Trigger: TGGCCCTGAGCTCTCCCGTCAGGCTTGCGCCAGATA...GCAGAGAATTATTGTACTAGCTTTGGAATCTTGTAGATCTGGGTCTATGTTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp GCTCCAAAACAGAGGACAGATAGAGGGGCCTGTGGCACTGGTGCTCTGTCTCCGAAAATATTGGTACAGTaGAAGAAGAGGCAGAACTAT +
Preference number: 4 (lower is better)
Translates to: APKQRTDRGACGTGALSPKILVQ*KKRQNY
Trigger: ATAGTTCTGCCTCTTCTTGCACTGTACCAATATTTT...CGGAGACAGAGCACCAGTGCCACAGGCCCCTCTATCTGTCCTCTGTTTTGGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR GCA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGGGCCTGTGGCACTGGTaGTCTGTCTCCGACAGCAGG +
Preference number: 4 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMGLWHW*SVSDSR
Trigger: CCTGCTGTCGGAGACAGAGCACCAGTGCCACAGGCC...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp ACTCCATGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTACTCCATGCACATGCTaGCCCACAGCAGGAACTCCA +
Preference number: 4 (lower is better)
Translates to: TPCSLTSSGLRCTPHFSTTPCTC*PTAGTP
Trigger: TGGAGTTCCTGCTGTGGGCCAGCATGTGCATGGAGT...AGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp GCTGCCAGGTGTAGCCTAGCCTCCACCATGATCTCCAGCTCCAAAACAGAGGACATATCATCAAGAGCTTaGCTCCAGCATTTAAAAGCA +
Preference number: 4 (lower is better)
Translates to: AARCSLASTMISSSKTEDISSRA*LQHLKA
Trigger: TGCTTTTAAATGCTGGAGCCAAGCTCTTGATGATAT...GTCCTCTGTTTTGGAGCTGGAGATCATGGTGGAGGCTAGGCTACACCTGGCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR CCA 90 bp GTCTCAGATGATGCTACTTTCAAAGAAGTAAACCTCCTTTGTCTTGCTTTTATTGAGGTGAGGAGCTGCTaGGGGCACCAGGGAGGGAGG +
Preference number: 4 (lower is better)
Translates to: VSDDATFKEVNLLCLAFIEVRSC*GHQGGR
Trigger: CCTCCCTCCCTGGTGCCCCCAGCAGCTCCTCACCTC...AATAAAAGCAAGACAAAGGAGGTTTACTTCTTTGAAAGTAGCATCATCTGAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR TCA 90 bp GCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCATCAGTGGAAGACTGTCCTATaGCCATCAGCTTCCGGCAAA +
Preference number: 4 (lower is better)
Translates to: APSPVTNQMSLHALLLHQWKTVL*PSASGK
Trigger: TTTGCCGGAAGCTGATGGTCATAGGACAGTCTTCCA...CTGATGAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp ATGATGGAAATTAAGTTCAGAGCTTCAGGCTTGATACACAGCAGTCTACCACTCGACCAGCCCCAGCTGTaGGGAGGGAAGTTTGCTTTT +
Preference number: 4 (lower is better)
Translates to: MMEIKFRASGLIHSSLPLDQPQL*GGKFAF
Trigger: AAAAGCAAACTTCCCTCCTCACAGCTGGGGCTGGTC...GAGTGGTAGACTGCTGTGTATCAAGCCTGAAGCTCTGAACTTAATTTCCATCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR TCA 90 bp ATGATGGAAATTAAGTTCAGAGCTTCAGGCTTGATACACAGCAGTCTACCACTCGCGCTATCTTCGCTGTaGTCATCGCCGCTTGCAAAC +
Preference number: 4 (lower is better)
Translates to: MMEIKFRASGLIHSSLPLALSSL*SSPLAN
Trigger: GTTTGCAAGCGGCGATGATCACAGCGAAGATAGCGC...GAGTGGTAGACTGCTGTGTATCAAGCCTGAAGCTCTGAACTTAATTTCCATCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR TCA 90 bp AAGTATCCACACACAGTGAGGACAAGGATAACATCAGTTACACTTAGATACCCCAGGGAGCTGTCCCGATaGACCTTGCCTGATGATTCG +
Preference number: 4 (lower is better)
Translates to: KYPHTVRTRITSVTLRYPRELSR*TLPDDS
Trigger: CGAATCATCAGGCAAGGTTCATCGGGACAGCTCCCT...GGGGTATCTAAGTGTAACTGATGTTATCCTTGTCCTCACTGTGTGTGGATACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
CDS-3UTR GCA 90 bp GTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCAGCTTCCATCTGCTTTaGAACCCAAGATGCAGTACC +
Preference number: 4 (lower is better)
Translates to: VKKPAPSPVTNQMSLHALSFHLL*NPRCST
Trigger: GGTACTGCATCTTGGGTTGCAAAGCAGATGGAAGCT...GAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp GTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCCCCATAGCTTCCATCTaGTTTGCAACCCAAGATGCA +
Preference number: 4 (lower is better)
Translates to: VKKPAPSPVTNQMSLHALPIASI*FATQDA
Trigger: TGCATCTTGGGTTGCAAAGCAGATGGAAGCTATGGG...GAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp CTGAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTCAGGATCCGCCTGTTTaGGTCAGAGAGGGCTTCCAA +
Preference number: 4 (lower is better)
Translates to: LRCTPHFSTSLTLVHTSSQDPPV*VREGFQ
Trigger: TTGGAAGCCCTCTCTGACTCAAACAGGCGGATCCTG...ACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp CTGAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTAACAGCTGGGAATGCTaGACTCGCCTCTCTCCTCGA +
Preference number: 4 (lower is better)
Translates to: LRCTPHFSTSLTLVHTSSNSWEC*TRLSPR
Trigger: TCGAGGAGAGAGGCGAGTTCAGCATTCCCAGCTGTT...ACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp ATTATTTTTGGTGAAGGATCGGGAATACAGTTGATTGTCGCAGCCAAACTTATGGGGGGTGTTGGCATGTaGATCTCTTCCGTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: IIFGEGSGIQLIVAAKLMGGVGM*ISSVPR
Trigger: CCTGGGAACGGAAGAGATGCACATGCCAACACCCCC...CATAAGTTTGGCTGCGACAATCAACTGTATTCCCGATCCTTCACCAAAAATAAT
47% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR GCA 90 bp TTTACACCATCAGTCTCTAGAGCAGAGTGTCACAGTGAGCTAGCTAAGGAAAGACACCAGGGAGGGAGGTaGCAAATTCTTTCCAGTTGT +
Preference number: 4 (lower is better)
Translates to: FTPSVSRAECHSELAKERHQGGR*QILSSC
Trigger: ACAACTGGAAAGAATTTGGCACCTCCCTCCCTGGTG...TCTTTCCTTAGCTAGCTCACTGTGACACTCTGCTCTAGAGACTGATGGTGTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR GCA 90 bp TGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCACTCCACCAGGGAGGGAGGTaGCAAATTCTTTCCAGTTGT +
Preference number: 4 (lower is better)
Translates to: CSLTSSGLRCTPHFSTSLHQGGR*QILSSC
Trigger: ACAACTGGAAAGAATTTGGCACCTCCCTCCCTGGTG...GAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp ATGCTAGGTGAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTAACAGCGGGGTCACTTaGTCTGTGTACCTCTCATGT +
Preference number: 4 (lower is better)
Translates to: MLGEQSKSLLPLQLPIKCNSGVT*SVYLSC
Trigger: ACATGAGAGGTACACAGAGCAAGTGACCCCGCTGTT...ACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTCACCTAGCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp TGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCACTCGCCATGTCAAACATGTaGAGAACGGGCAGCCACTTA +
Preference number: 4 (lower is better)
Translates to: CSLTSSGLRCTPHFSTSLAMSNM*RTGSHL
Trigger: TAAGTGGCTGCCCGTTCTGCACATGTTTGACATGGC...GAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp GCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCATCAGTCTTTAACAGAGCTGTaGCTTCTGGGAAGAGGCTTG +
Preference number: 4 (lower is better)
Translates to: APSPVTNQMSLHALLLHQSLTEL*LLGRGL
Trigger: CAAGCCTCTTCCCAGAAGGCACAGCTCTGTTAAAGA...CTGATGAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp ACTCCATGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCTCGTTGTAATAGTTaGACGGCAGCCTGGGAGCAT +
Preference number: 4 (lower is better)
Translates to: TPCSLTSSGLRCTPHFSTSRCNS*TAAWEH
Trigger: ATGCTCCCAGGCTGCCGTCCAACTATTACAACGAGA...AGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp TTGGTTCTTGAAGTTTTCTTAGAACAAACACCCTCCTCTGCAGTTTCCTCTTGCTCGCTTCCTTCCAGTTaGTCAAGGAGCACAACGGCT +
Preference number: 4 (lower is better)
Translates to: LVLEVFLEQTPSSAVSSCSLPSS*SRSTTA
Trigger: AGCCGTTGTGCTCCTTGACCAACTGGAAGGAAGCGA...GCAAGAGGAAACTGCAGAGGAGGGTGTTTGTTCTAAGAAAACTTCAAGAACCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
CDS-3UTR CCA 90 bp GTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCAACACCTTCGAATCCTaGAGAAGCTTCAGTGTAGAG +
Preference number: 4 (lower is better)
Translates to: VKKPAPSPVTNQMSLHALNTFES*RSFSVE
Trigger: CTCTACACTGAAGCTTCTCCAGGATTCGAAGGTGTT...GAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
3UTR CAA 72 bp CCGGATAGTTCAGCTGAGTTGATTTGCTTTGTCGTCTaGAGTAGATGTGTCTCCAACAAGGCCAGCTGTTCA +
Preference number: 4 (lower is better)
Translates to: PDSSAELICFVV*SRCVSNKASCS
Trigger: TGAACAGCTGGCCTTGTTGGAGACACATCTACTCAAGACGACAAAGCAAATCAACTCAGCTGAACTATCCGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
CDS-3UTR TCA 90 bp GCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCATCAGCGTCTTGAGAGTCCTTaGCATAGCAATGGTCAATCA +
Preference number: 4 (lower is better)
Translates to: APSPVTNQMSLHALLLHQRLESP*HSNGQS
Trigger: TGATTGACCATTGCTATGTCAAGGACTCTCAAGACG...CTGATGAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp TCCAACATAGACCCAGATCTACAAGATTCCAAAGCTAGTACAATAATTCTCTGCAGGGAGCTGTCCCGATaGACCTTGCCTGATGATTCG +
Preference number: 4 (lower is better)
Translates to: SNIDPDLQDSKASTIILCRELSR*TLPDDS
Trigger: CGAATCATCAGGCAAGGTTCATCGGGACAGCTCCCT...GCAGAGAATTATTGTACTAGCTTTGGAATCTTGTAGATCTGGGTCTATGTTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp ATGCTAGGTGAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTTCCAGAGTGGAACAATaGGAAGAGGTTAGGGTCACA +
Preference number: 4 (lower is better)
Translates to: MLGEQSKSLLPLQLPIKCSRVEQ*EEVRVT
Trigger: TGTGACCCTAACCTCTTCTCATTGTTCCACTCTGGA...ACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTCACCTAGCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp AGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCTCAAATCTACCACGTTaGCGTCATCCAAAGGATGTT +
Preference number: 4 (lower is better)
Translates to: SLLPLQLPIKCHSMLSYFSNLPR*RHPKDV
Trigger: AACATCCTTTGGATGACGTCAACGTGGTAGATTTGA...GAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp TGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCACTCCGGGCACTTTCTTTTTaGACACCTTCGAATCCTGGA +
Preference number: 4 (lower is better)
Translates to: CSLTSSGLRCTPHFSTSLRALSF*TPSNPG
Trigger: TCCAGGATTCGAAGGTGTTCAAAAAGAAAGTGCCCG...GAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp GAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGTCCTCCATCAGCATTTaGCGCTCTATTCTTCCTTTC +
Preference number: 4 (lower is better)
Translates to: EQSKSLLPLQLPIKCHSMSSISI*RSILPF
Trigger: GAAAGGAAGAATAGAGCGTCAAATGCTGATGGAGGA...CATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp GAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTCCAGTACAGATTCACTaGCCTGTGCAGCAGCTCGTA +
Preference number: 4 (lower is better)
Translates to: EMHTSFFYFTHFSTYQQCPVQIH*PVQQLV
Trigger: TACGAGCTGCTGCACAGGTCAGTGAATCTGTACTGG...ACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp TTTACACCATCAGTCTCTAGAGCAGAGTGTCACAGTGAGCTAGCTAAGGAAAGAAGCCCTTTTCTTATCTaGAAAGAGGAGGAGGCTTCC +
Preference number: 4 (lower is better)
Translates to: FTPSVSRAECHSELAKERSPFLI*KEEEAS
Trigger: GGAAGCCTCCTCCTCTTTGCAGATAAGAAAAGGGCT...TCTTTCCTTAGCTAGCTCACTGTGACACTCTGCTCTAGAGACTGATGGTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR GCA 90 bp GCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCATCAGGACGTAATACAGGCTTaGGATAACACTGCAGATGTC +
Preference number: 4 (lower is better)
Translates to: APSPVTNQMSLHALLLHQDVIQA*DNTADV
Trigger: GACATCTGCAGTGTTATCGCAAGCCTGTATTACGTC...CTGATGAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp ACTCCATGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTGCAAAACTTCCAGTTaGTCAAGGAGCACAACGGCT +
Preference number: 4 (lower is better)
Translates to: TPCSLTSSGLRCTPHFSTCKTSS*SRSTTA
Trigger: AGCCGTTGTGCTCCTTGACCAACTGGAAGTTTTGCA...AGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp GCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCATCAGGTTTGTGCTAACAGTTaGAGCCTGCAAAACTTCCAG +
Preference number: 4 (lower is better)
Translates to: APSPVTNQMSLHALLLHQVCANS*SLQNFQ
Trigger: CTGGAAGTTTTGCAGGCTCCAACTGTTAGCACAAAC...CTGATGAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp TGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCACTCCAGAGACAAGCTGTTTaGCTAGTCTCTGCTCTGAAG +
Preference number: 4 (lower is better)
Translates to: CSLTSSGLRCTPHFSTSLQRQAV*LVSALK
Trigger: CTTCAGAGCAGAGACTAGCCAAACAGCTTGTCTCTG...GAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp TGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCACTCTTATCTTTCAGGTTTTaGGGGGTGGGTTTGCTCCTC +
Preference number: 4 (lower is better)
Translates to: CSLTSSGLRCTPHFSTSLLSFRF*GVGLLL
Trigger: GAGGAGCAAACCCACCCCCCAAAACCTGAAAGATAA...GAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp CTGAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTCGTCGAAATCAGCAATaGATTCCTGGAGATACCGCC +
Preference number: 4 (lower is better)
Translates to: LRCTPHFSTSLTLVHTSSRRNQQ*IPGDTA
Trigger: GGCGGTATCTCCAGGAATTCATTGCTGATTTCGACG...ACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp ACTCCATGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCAAAGCATGAAATGTaGGTCTGGCCGTTTCATCTC +
Preference number: 4 (lower is better)
Translates to: TPCSLTSSGLRCTPHFSTSKHEM*VWPFHL
Trigger: GAGATGAAACGGCCAGACTCACATTTCATGCTTTGA...AGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp TGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCACTCGTACGGAGCAGACTCTaGAAAAGCAATGCAGACAAT +
Preference number: 4 (lower is better)
Translates to: CSLTSSGLRCTPHFSTSLVRSRL*KSNADN
Trigger: ATTGTCTGCATTGCTTTTTCAGAGTCTGCTCCGTAC...GAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp GAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGTTTGCTTTGTCGTCTTaGGTAGATGTGTCTCCAACA +
Preference number: 4 (lower is better)
Translates to: EQSKSLLPLQLPIKCHSMFALSS*VDVSPT
Trigger: TGTTGGAGACACATCTACTCAAGACGACAAAGCAAA...CATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp ATGCTAGGTGAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTAGTCATCCATCAGAATaGGGCTTTTTGCCAGGGTTA +
Preference number: 4 (lower is better)
Translates to: MLGEQSKSLLPLQLPIKCSHPSE*GFLPGL
Trigger: TAACCCTGGCAAAAAGCCTCATTCTGATGGATGACT...ACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTCACCTAGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp CTGAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTAGTTGTACAGGGACGTaGGAAGTGTGTCATCAGGCA +
Preference number: 4 (lower is better)
Translates to: LRCTPHFSTSLTLVHTSSSCTGT*EVCHQA
Trigger: TGCCTGATGACACACTTCTCACGTCCCTGTACAACT...ACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAAGTGGTAGATAATGGGTaGGAGGAGCCCGTAGCACTG +
Preference number: 4 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYEVVDNG*EEPVAL
Trigger: CAGTGCTACGGGCTCCTCGCACCCATTATCTACCAC...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp GAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGGTTTCTGTCCAGCTCTaGCATATCAAAAATGGATGG +
Preference number: 4 (lower is better)
Translates to: EQSKSLLPLQLPIKCHSMVSVQL*HIKNGW
Trigger: CCATCCATTTTTGATATGGCAGAGCTGGACAGAAAC...CATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp TCCAACATAGACCCAGATCTACAAGATTCCAAAGCTAGTACAATAATTCTCTGCGTAGCCACCACGGTATaGAAGAACCATCGCTCTCCT +
Preference number: 4 (lower is better)
Translates to: SNIDPDLQDSKASTIILCVATTV*KNHRSP
Trigger: AGGAGAGCGATGGTTCTTGCATACCGTGGTGGCTAC...GCAGAGAATTATTGTACTAGCTTTGGAATCTTGTAGATCTGGGTCTATGTTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp ATGCTAGGTGAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTAGCTCTTCAAGTGCCTaGATGTTGTCTTTATGGGTG +
Preference number: 4 (lower is better)
Translates to: MLGEQSKSLLPLQLPIKCSSSSA*MLSLWV
Trigger: CACCCATAAAGACAACATGCAGGCACTTGAAGAGCT...ACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTCACCTAGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp AGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCCTTTTGTATGATGTCTaGCTTAAAGTGCTTCTCCTG +
Preference number: 4 (lower is better)
Translates to: SLLPLQLPIKCHSMLSYFLLYDV*LKVLLL
Trigger: CAGGAGAAGCACTTTAAGGCAGACATCATACAAAAG...GAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp GAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGTTCATATTCCTCTGCTaGGGTTGCTTTACAGACCTT +
Preference number: 4 (lower is better)
Translates to: EQSKSLLPLQLPIKCHSMFIFLC*GCFTDL
Trigger: AAGGTCTGTAAAGCAACCGCAGCAGAGGAATATGAA...CATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGACTCCTCAGAAGAACTaGAGGAGCTTCTGGAGGACG +
Preference number: 4 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMTPQKN*RSFWRT
Trigger: CGTCCTCCAGAAGCTCCTCCAGTTCTTCTGAGGAGT...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp GTATTAGTCACTGTAGATATCCCAGTTCTAAGTATTTGCTTGTATCAGGCTCTTGTAGCGTTGTTGCCTTaGTCATTGGAGGAGGGGGCT +
Preference number: 4 (lower is better)
Translates to: VLVTVDIPVLSICLYQALVALLP*SLEEGA
Trigger: AGCCCCCTCCTCCAATGACCAAGGCAACAACGCTAC...AAGAGCCTGATACAAGCAAATACTTAGAACTGGGATATCTACAGTGACTAATAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
CDS-3UTR CCA 90 bp GCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCATCAGCGGGTAAATGAGAATTaGTTTCGTTGTCTCCCCAAT +
Preference number: 4 (lower is better)
Translates to: APSPVTNQMSLHALLLHQRVNEN*FRCLPN
Trigger: ATTGGGGAGACAACGAAACCAATTCTCATTTACCCG...CTGATGAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp GTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCGTTCAAAGATCAGGCTaGAACCTCCATTATCAGATT +
Preference number: 4 (lower is better)
Translates to: VKKPAPSPVTNQMSLHALVQRSG*NLHYQI
Trigger: AATCTGATAATGGAGGTTCCAGCCTGATCTTTGAAC...GAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp TGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCACTCGGGAGTTCAGGGAAATaGGGTCTAAAAACTCACTGT +
Preference number: 4 (lower is better)
Translates to: CSLTSSGLRCTPHFSTSLGSSGK*GLKTHC
Trigger: ACAGTGAGTTTTTAGACCCCATTTCCCTGAACTCCC...GAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
3UTR CAA 72 bp ACCAGTCTAGCGACTTGCTGGGCGGGGAAAATCTCGTaGCCTTTAATATTATCACAGAAGAGATTCTCTTCT +
Preference number: 4 (lower is better)
Translates to: TSLATCWAGKIS*PLILSQKRFSS
Trigger: AGAAGAGAATCTCTTCTGTGATAATATTAAAGGCAACGAGATTTTCCCCGCCCAGCAAGTCGCTAGACTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
3UTR CAA 72 bp TTTATCTTTTCAGGCAGCAGCACCTGCTGTGGCTTCTaGGTTCTTGAAGTTTTCTTAGAACAAACACCCTCC +
Preference number: 4 (lower is better)
Translates to: FIFSGSSTCCGF*VLEVFLEQTPS
Trigger: GGAGGGTGTTTGTTCTAAGAAAACTTCAAGAACCAAGAAGCCACAGCAGGTGCTGCTGCCTGAAAAGATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
CDS-3UTR TCA 90 bp GAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGTGTTTCTCTTCACATTaGTCAATGGTTCGACTGCAA +
Preference number: 4 (lower is better)
Translates to: EQSKSLLPLQLPIKCHSMCFSSH*SMVRLQ
Trigger: TTGCAGTCGAACCATTGATCAATGTGAAGAGAAACA...CATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp ATGCTAGGTGAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTACTTTAAGGCTCCTTTaGTTGCTGGTTTGGAGAACA +
Preference number: 4 (lower is better)
Translates to: MLGEQSKSLLPLQLPIKCTLRLL*LLVWRT
Trigger: TGTTCTCCAAACCAGCAATCAAAGGAGCCTTAAAGT...ACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTCACCTAGCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp TCCAACATAGACCCAGATCTACAAGATTCCAAAGCTAGTACAATAATTCTCTGCACGGATTCCTCATTCTaGAGGTTGGCATCGCTTTCG +
Preference number: 4 (lower is better)
Translates to: SNIDPDLQDSKASTIILCTDSSF*RLASLS
Trigger: CGAAAGCGATGCCAACCTGCAGAATGAGGAATCCGT...GCAGAGAATTATTGTACTAGCTTTGGAATCTTGTAGATCTGGGTCTATGTTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp ATGATGGAAATTAAGTTCAGAGCTTCAGGCTTGATACACAGCAGTCTACCACTCGACGTAATACAGGCTTaGGATAACACTGCAGATGTC +
Preference number: 4 (lower is better)
Translates to: MMEIKFRASGLIHSSLPLDVIQA*DNTADV
Trigger: GACATCTGCAGTGTTATCGCAAGCCTGTATTACGTC...GAGTGGTAGACTGCTGTGTATCAAGCCTGAAGCTCTGAACTTAATTTCCATCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR GCA 90 bp TGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCACTCGTGGGGGAGGAATTCTaGTCTTCTTTATTTTTGAGC +
Preference number: 4 (lower is better)
Translates to: CSLTSSGLRCTPHFSTSLVGEEF*SSLFLS
Trigger: GCTCAAAAATAAAGAAGAGCAGAATTCCTCCCCCAC...GAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp AGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCTCTGTGGTTTGGTTGTaGTTCTTTTTCTTAGAGACA +
Preference number: 4 (lower is better)
Translates to: SLLPLQLPIKCHSMLSYFSVVWL*FFFLET
Trigger: TGTCTCTAAGAAAAAGAAGCACAACCAAACCACAGA...GAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp GAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGGAACCATCGCTCTCCTaGAACATAAGAAGATTTTCA +
Preference number: 4 (lower is better)
Translates to: EQSKSLLPLQLPIKCHSMEPSLS*NIRRFS
Trigger: TGAAAATCTTCTTATGTTGCAGGAGAGCGATGGTTC...CATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp CTGAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTTTCCTCTGCTGCGGTTaGTTTACAGACCTTCAAAGC +
Preference number: 4 (lower is better)
Translates to: LRCTPHFSTSLTLVHTSSFLCCG*FTDLQS
Trigger: GCTTTGAAGGTCTGTAAAGCAACCGCAGCAGAGGAA...ACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp AGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCCGTTTCAGGAAAAGATaGATTTCTTTTTGGCGCAAA +
Preference number: 4 (lower is better)
Translates to: SLLPLQLPIKCHSMLSYFRFRKR*ISFWRK
Trigger: TTTGCGCCAAAAAGAAATGCATCTTTTCCTGAAACG...GAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCCGGCAGTGTAGAGAGTaGCTCTCCATGTCAGGTACC +
Preference number: 4 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFRQCRE*LSMSGT
Trigger: GGTACCTGACATGGAGAGCCACTCTCTACACTGCCG...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp AGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCATATCATCAAGAGCTTaGCTCCAGCATTTAAAAGCA +
Preference number: 4 (lower is better)
Translates to: SLLPLQLPIKCHSMLSYFISSRA*LQHLKA
Trigger: TGCTTTTAAATGCTGGAGCCAAGCTCTTGATGATAT...GAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp TGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCACTCAACACTCAGTGCTTCTaGGCTTCTTTACTTTTTCCC +
Preference number: 4 (lower is better)
Translates to: CSLTSSGLRCTPHFSTSLNTQCF*ASLLFP
Trigger: GGGAAAAAGTAAAGAAGCCCAGAAGCACTGAGTGTT...GAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp GAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGTCAGGTAGATGGCTTTaGACAGCTTGTTCTTCTTTA +
Preference number: 4 (lower is better)
Translates to: EQSKSLLPLQLPIKCHSMSGRWL*TACSSL
Trigger: TAAAGAAGAACAAGCTGTCCAAAGCCATCTACCTGA...CATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp GAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCAGAGAAAGTTATCCTaGCTAACAGGAAAGGTTTTG +
Preference number: 4 (lower is better)
Translates to: EQSKSLLPLQLPIKCHSMQRKLS*LTGKVL
Trigger: CAAAACCTTTCCTGTTAGCCAGGATAACTTTCTCTG...CATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp ATGCTAGGTGAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTAGGTTAACCAGAATGTaGGGCAAGCCTCTGTTTATT +
Preference number: 4 (lower is better)
Translates to: MLGEQSKSLLPLQLPIKCRLTRM*GKPLFI
Trigger: AATAAACAGAGGCTTGCCCCACATTCTGGTTAACCT...ACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTCACCTAGCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGGGGTTAACCAGGATCTaGGAGAAAGGAATTCGCTCC +
Preference number: 4 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMGLTRI*EKGIRS
Trigger: GGAGCGAATTCCTTTCTCCCAGATCCTGGTTAACCC...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp ATGCTAGGTGAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTGCACATCTGGTTTTCTaGAGATATCATCAAGAGCTT +
Preference number: 4 (lower is better)
Translates to: MLGEQSKSLLPLQLPIKCAHLVF*RYHQEL
Trigger: AAGCTCTTGATGATATCTTCAGAAAACCAGATGTGC...ACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTCACCTAGCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCTTAAAGTGCTTCTCCTaGAGGCCCAGGACCACAGCT +
Preference number: 4 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFLKCFS*RPRTTA
Trigger: AGCTGTGGTCCTGGGCCTTCAGGAGAAGCACTTTAA...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAATGCGATCCAGGCCAGTaGGCTATACATCTCAGTTTG +
Preference number: 4 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYECDPGQ*AIHLSL
Trigger: CAAACTGAGATGTATAGCTCACTGGCCTGGATCGCA...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAAAAGGAGGACAAGATGTaGAGGCACTGTCTCACGGAT +
Preference number: 4 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYEKEDKM*RHCLTD
Trigger: ATCCGTGAGACAGTGCCTGCACATCTTGTCCTCCTT...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp ATGCTAGGTGAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTGCAAACACCCCCAGATaGCAAATTTCGATAGAAATT +
Preference number: 4 (lower is better)
Translates to: MLGEQSKSLLPLQLPIKCANTPR*QISIEI
Trigger: AATTTCTATCGAAATTTGGCATCTGGGGGTGTTTGC...ACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTCACCTAGCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp ATGCTAGGTGAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCAGCAAGCTATCATGTaGTGTATACTTTCAAAGCTG +
Preference number: 4 (lower is better)
Translates to: MLGEQSKSLLPLQLPIKCQQAIM*CILSKL
Trigger: CAGCTTTGAAAGTATACAGCACATGATAGCTTGCTG...ACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTCACCTAGCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp CACTTTAGTACATACCAGCAGTGTTATGAAATAGATACTCATATCCCACTCTATTCAGGCAGCAGCACCTaGTGTGGCTTCTTGGTTCTT +
Preference number: 4 (lower is better)
Translates to: HFSTYQQCYEIDTHIPLYSGSST*CGFLVL
Trigger: AAGAACCAAGAAGCCACAGCAGGTGCTGCTGCCTGA...ATAGAGTGGGATATGAGTATCTATTTCATAACACTGCTGGTATGTACTAAAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGTGCTTCAGTAGTATCTaGAGCTCCCGGGAAAAGTTC +
Preference number: 4 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMCFSSI*SSREKF
Trigger: GAACTTTTCCCGGGAGCTGCAGATACTACTGAAGCA...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp GAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGTTGGAAATCCATCAATaGATGAAGAAGAGTAGAGCT +
Preference number: 4 (lower is better)
Translates to: EQSKSLLPLQLPIKCHSMLEIHQ*MKKSRA
Trigger: AGCTCTACTCTTCTTCATGCATTGATGGATTTCCAA...CATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp TGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCACTCCATTTTATCAAGATCTaGATGACAGGTACCAAGACG +
Preference number: 4 (lower is better)
Translates to: CSLTSSGLRCTPHFSTSLHFIKI*MTGTKT
Trigger: CGTCTTGGTACCTGTCATCCAGATCTTGATAAAATG...GAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCAAGTTTCTGGAGAGGTaGGGCTGCATGACTCTTCGG +
Preference number: 4 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFKFLER*GCMTLR
Trigger: CCGAAGAGTCATGCAGCCCCACCTCTCCAGAAACTT...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGCAGGGAGACATCAAATaGAACCTTGGTCATTGGAGG +
Preference number: 4 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMQGDIK*NLGHWR
Trigger: CCTCCAATGACCAAGGTTCCATTTGATGTCTCCCTG...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
3UTR CAA 72 bp AAGCCTCTGTTTATTAGCTCTTCAAGTGCCTGCATGTaGTCTTTATGGGTGAGAGGTTTTCCAGAATCGAAT +
Preference number: 4 (lower is better)
Translates to: KPLFISSSSACM*SLWVRGFPESN
Trigger: ATTCGATTCTGGAAAACCTCTCACCCATAAAGACAACATGCAGGCACTTGAAGAGCTAATAAACAGAGGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
3UTR CAA 72 bp ATCTCGATCACTATGGCTTTAAACTTACTGGGAGACTaGAGTGCCCTCCTAGAAATGACAGTCTCCTTATAT +
Preference number: 4 (lower is better)
Translates to: ISITMALNLLGD*SALLEMTVSLY
Trigger: ATATAAGGAGACTGTCATTTCTAGGAGGGCACTCAAGTCTCCCAGTAAGTTTAAAGCCATAGTGATCGAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
CDS-3UTR TCA 90 bp GAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTCGAATACTCCTCTTTTaGAGATCATCACAGCCATCT +
Preference number: 4 (lower is better)
Translates to: EMHTSFFYFTHFSTYQQCRILLF*RSSQPS
Trigger: AGATGGCTGTGATGATCTTCAAAAGAGGAGTATTCG...ACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp GAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTACACAGACACAGAAATaGAGAATTGCTGCCAAGCTA +
Preference number: 4 (lower is better)
Translates to: EMHTSFFYFTHFSTYQQCTQTQK*RIAAKL
Trigger: TAGCTTGGCAGCAATTCTTCATTTCTGTGTCTGTGT...ACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp CACTTTAGTACATACCAGCAGTGTTATGAAATAGATACTCATATCCCACTCTATCTTCACTGTAGTCTTTaGAACCAGGAGGTGAGGAGC +
Preference number: 4 (lower is better)
Translates to: HFSTYQQCYEIDTHIPLYLHCSL*NQEVRS
Trigger: GCTCCTCACCTCCTGGTTTCAAAGACTACAGTGAAG...ATAGAGTGGGATATGAGTATCTATTTCATAACACTGCTGGTATGTACTAAAGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAGAGAGGCGGGTAAATaGGAATTGGTTTCGTTGTCT +
Preference number: 4 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMREAGK*ELVSLS
Trigger: AGACAACGAAACCAATTCTCATTTACCCGCCTCTCT...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAAACCTGCACCCTGATGTaGTATCCAGCATCTTTTTCC +
Preference number: 4 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYETCTLM*YPASFS
Trigger: GGAAAAAGATGCTGGATATCACATCAGGGTGCAGGT...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp ACTCCATGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTGGCTTCTTGGTTCTTaGAGTTTTCTTAGAACAAAC +
Preference number: 4 (lower is better)
Translates to: TPCSLTSSGLRCTPHFSTWLLGS*SFLRTN
Trigger: GTTTGTTCTAAGAAAACTTCAAGAACCAAGAAGCCA...AGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp ACTCCATGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCCTCAAGAAGTATTTaGTGGAATCTCTTTCGTCTA +
Preference number: 4 (lower is better)
Translates to: TPCSLTSSGLRCTPHFSTSSRSI*WNLFRL
Trigger: TAGACGAAAGAGATTCCATCAAATACTTCTTGAGGA...AGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp TGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCACTCGTACATTATTTTTGGTaGAGGATCGGGAATACAGTT +
Preference number: 4 (lower is better)
Translates to: CSLTSSGLRCTPHFSTSLVHYFW*RIGNTV
Trigger: AACTGTATTCCCGATCCTTCACCAAAAATAATGTAC...GAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAACACCTCAGCCAAAGGTaGATATTGAAGTATTCCCGG +
Preference number: 4 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYEHLSQR*ILKYSR
Trigger: CCGGGAATACTTCAATATTCACCTTTGGCTGAGGTG...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp ACTCCATGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTATGTTTTCCAAACCTTaGAGAAGTTCCCTTGGAAAT +
Preference number: 4 (lower is better)
Translates to: TPCSLTSSGLRCTPHFSTMFSKP*RSSLGN
Trigger: ATTTCCAAGGGAACTTCTTCAAGGTTTGGAAAACAT...AGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAAGAAAAGGCTTCCTACTaGCACAATGCAACCATTCGC +
Preference number: 4 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYEEKASY*HNATIR
Trigger: GCGAATGGTTGCATTGTGTCAGTAGGAAGCCTTTTC...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp GAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTTGTGAGAATATTTTaGGAAGTCGTTTTTGGGTAT +
Preference number: 4 (lower is better)
Translates to: EQSKSLLPLQLPIKCHSMLVRIF*EVVFGY
Trigger: ATACCCAAAAACGACTTCGCAAAATATTCTCACAAG...CATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAAAGCCCTTTTCTTATCTaGAAAGAGGAGGAGGCTTCC +
Preference number: 4 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYESPFLI*KEEEAS
Trigger: GGAAGCCTCCTCCTCTTTGCAGATAAGAAAAGGGCT...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAGTTCCAGAAGACCCTaGAACAATTCTGCAGTAGAG +
Preference number: 4 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMSSRRP*NNSAVE
Trigger: CTCTACTGCAGAATTGTTGCAGGGTCTTCTGGAACT...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGTCTGTTCCATTGAGGTaGCTAGAGCCTTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMSVPLR*LEPSSS
Trigger: AGAAGAAGAAGGCTCTAGCCACCTCAATGGAACAGA...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCTCTGCTTTCTTTGACTaGGGGTTGTCCTGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFSAFFD*GLSCFW
Trigger: CCAGAAGCAGGACAACCCCCAGTCAAAGAAAGCAGA...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp GCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCATCAGTTTCTGACTATGTCTTaGCAAATGACAGACACAAAA +
Preference number: 4 (lower is better)
Translates to: APSPVTNQMSLHALLLHQFLTMS*QMTDTK
Trigger: TTTTGTGTCTGTCATTTGCCAAGACATAGTCAGAAA...CTGATGAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAAGCTCAGCCAGGTTCTTaGGTGTGGAAGAATCAATCT +
Preference number: 4 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYEAQPGS*VWKNQS
Trigger: AGATTGATTCTTCCACACCCAAGAACCTGGCTGAGC...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGGGCTCCTTTGATTGCTaGTTTGGAGAACATCTTGTG +
Preference number: 4 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMGSFDC*FGEHLV
Trigger: CACAAGATGTTCTCCAAACCAGCAATCAAAGGAGCC...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp CACTTTAGTACATACCAGCAGTGTTATGAAATAGATACTCATATCCCACTCTATCATCAAATGGAACCTTaGTCATTGGAGGAGGGGGCT +
Preference number: 4 (lower is better)
Translates to: HFSTYQQCYEIDTHIPLYHQMEP*SLEEGA
Trigger: AGCCCCCTCCTCCAATGACCAAGGTTCCATTTGATG...ATAGAGTGGGATATGAGTATCTATTTCATAACACTGCTGGTATGTACTAAAGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp CACTTTAGTACATACCAGCAGTGTTATGAAATAGATACTCATATCCCACTCTATTGCTTCTGGAGAAAGTaGATAAGCTGTCCAGCTAGG +
Preference number: 4 (lower is better)
Translates to: HFSTYQQCYEIDTHIPLYCFWRK*ISCPAR
Trigger: CCTAGCTGGACAGCTTATTCACTTTCTCCAGAAGCA...ATAGAGTGGGATATGAGTATCTATTTCATAACACTGCTGGTATGTACTAAAGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp CACTTGTGGTGGTTAACTTTTAGTGTTACTTCTCATCATCAGCTTCATTCGGCCATAGATATTTTCCTCTaGAGTAACTTCAGGAACCGA +
Preference number: 4 (lower is better)
Translates to: HLWWLTFSVTSHHQLHSAIDIFL*SNFRNR
Trigger: TCGGTTCCTGAAGTTACTTCAGAGGAAAATATCTAT...GGCCGAATGAAGCTGATGATGAGAAGTAACACTAAAAGTTAACCACCACAAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
CDS-3UTR TCA 90 bp TCCAACATAGACCCAGATCTACAAGATTCCAAAGCTAGTACAATAATTCTCTGCTTACAGTTAACTCTGTaGAACACTCAGTGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: SNIDPDLQDSKASTIILCLQLTL*NTQCFW
Trigger: CCAGAAGCACTGAGTGTTTCACAGAGTTAACTGTAA...GCAGAGAATTATTGTACTAGCTTTGGAATCTTGTAGATCTGGGTCTATGTTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGTCTGCTGTGTCGGACTaGTCTGTTATGATATTTGGA +
Preference number: 4 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMSAVSD*SVMIFG
Trigger: TCCAAATATCATAACAGATCAGTCCGACACAGCAGA...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAATTGACACCATCCAGTTaGAAAGGCTTCCTACTGACA +
Preference number: 4 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYELTPSS*KGFLLT
Trigger: TGTCAGTAGGAAGCCTTTTCAACTGGATGGTGTCAA...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp TGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCACTCTTTACATCTTCTTTATaGTCGTCGAAATCAGCAATG +
Preference number: 4 (lower is better)
Translates to: CSLTSSGLRCTPHFSTSLFTSSL*SSKSAM
Trigger: CATTGCTGATTTCGACGAGCATAAAGAAGATGTAAA...GAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp CTGAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTTTGTCATGTAGAAGATaGAGCAAGCTATCATGTGCT +
Preference number: 4 (lower is better)
Translates to: LRCTPHFSTSLTLVHTSSLSCRR*SKLSCA
Trigger: AGCACATGATAGCTTGCTGCATCTTCTACATGACAA...ACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp CTGAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTTCTGCAGTTTCCTCTTaGTCAATACCAAAAAGAGAC +
Preference number: 4 (lower is better)
Translates to: LRCTPHFSTSLTLVHTSSSAVSS*SIPKRD
Trigger: GTCTCTTTTTGGTATTGAGCAAGAGGAAACTGCAGA...ACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp TGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCACTCAGGAATCTTGGTCTTTaGTTAAATTTCATGACTTCC +
Preference number: 4 (lower is better)
Translates to: CSLTSSGLRCTPHFSTSLRNLGL*LNFMTS
Trigger: GGAAGTCATGAAATTTAAGCAAAGACCAAGATTCCT...GAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp ACTCCATGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTAATCTTCTGTATCTGTaGTTTGGTTGTGCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: TPCSLTSSGLRCTPHFSTNLLYL*FGCASF
Trigger: AAAAGAAGCACAACCAAACCACAGATACAGAAGATT...AGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGTTGTATTCTTTTATTTaGCAGAGGCTGTCTCCAACC +
Preference number: 4 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMLYSFI*QRLSPT
Trigger: GGTTGGAGACAGCCTCTGTCAAATAAAAGAATACAA...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp CACTTTAGTACATACCAGCAGTGTTATGAAATAGATACTCATATCCCACTCTATTTTCCAGGGTCTCTCTaGAGCATCTCAAAGTGTCAT +
Preference number: 4 (lower is better)
Translates to: HFSTYQQCYEIDTHIPLYFPGSL*SISKCH
Trigger: ATGACACTTTGAGATGCTTCAGAGAGACCCTGGAAA...ATAGAGTGGGATATGAGTATCTATTTCATAACACTGCTGGTATGTACTAAAGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp TCTCCTTTTCAAGAAGTCATAAACAGGGGCAGATATCTCCACCATGAGATGAAAGCTCATGCCAATGATTaGTTTATCAAGGAGTTCATA +
Preference number: 4 (lower is better)
Translates to: SPFQEVINRGRYLHHEMKAHAND*FIKEFI
Trigger: TATGAACTCCTTGATAAAGCAATCATTGGCATGAGC...TTTCATCTCATGGTGGAGATATCTGCCCCTGTTTATGACTTCTTGAAAAGGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
CDS-3UTR GCA 90 bp CTGAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTCTTAACTTTCATTGTTaGTTTGTAGCCAGCAGGTAT +
Preference number: 4 (lower is better)
Translates to: LRCTPHFSTSLTLVHTSSLNFHC*FVASRY
Trigger: ATACCTGCTGGCTACAAAGCAACAATGAAAGTTAAG...ACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp CACTTTAGTACATACCAGCAGTGTTATGAAATAGATACTCATATCCCACTCTATCACTTCATATTCCTCTaGTGCGGTTGCTTTACAGAC +
Preference number: 4 (lower is better)
Translates to: HFSTYQQCYEIDTHIPLYHFIFL*CGCFTD
Trigger: GTCTGTAAAGCAACCGCAGCAGAGGAATATGAAGTG...ATAGAGTGGGATATGAGTATCTATTTCATAACACTGCTGGTATGTACTAAAGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp ATGATGGAAATTAAGTTCAGAGCTTCAGGCTTGATACACAGCAGTCTACCACTCTTTCTGACTATGTCTTaGCAAATGACAGACACAAAA +
Preference number: 4 (lower is better)
Translates to: MMEIKFRASGLIHSSLPLFLTMS*QMTDTK
Trigger: TTTTGTGTCTGTCATTTGCCAAGACATAGTCAGAAA...GAGTGGTAGACTGCTGTGTATCAAGCCTGAAGCTCTGAACTTAATTTCCATCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR CCA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAAGTGAGAAGACTTTCTTaGCCATCTCATAGTTACCGA +
Preference number: 4 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYEVRRLS*PSHSYR
Trigger: TCGGTAACTATGAGATGGCCAAGAAAGTCTTCTCAC...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp CACTTTAGTACATACCAGCAGTGTTATGAAATAGATACTCATATCCCACTCTATTGTCTGCCAAGATGTTaGAATGAAGCCTTTTCTGCG +
Preference number: 4 (lower is better)
Translates to: HFSTYQQCYEIDTHIPLYCLPRC*NEAFSA
Trigger: CGCAGAAAAGGCTTCATTCCAACATCTTGGCAGACA...ATAGAGTGGGATATGAGTATCTATTTCATAACACTGCTGGTATGTACTAAAGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGTGCATGTTGTCTTTATaGGTGAGAGGTTTTCCAGAA +
Preference number: 4 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMCMLSL*VRGFPE
Trigger: TTCTGGAAAACCTCTCACCCATAAAGACAACATGCA...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAAAGTTTGAGTTGCTACTaGGTCTTTAACAGAGCTGTG +
Preference number: 4 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYESLSCY*VFNRAV
Trigger: CACAGCTCTGTTAAAGACCCAGTAGCAACTCAAACT...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGGAAATAATATTGAACTaGATGGCAAGAGACACCAGA +
Preference number: 4 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMEIILN*MARDTR
Trigger: TCTGGTGTCTCTTGCCATTCAGTTCAATATTATTTC...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp TCCAACATAGACCCAGATCTACAAGATTCCAAAGCTAGTACAATAATTCTCTGCACAGAAATGAAGAATTaGTGCCAAGCTAAAAGTGTC +
Preference number: 4 (lower is better)
Translates to: SNIDPDLQDSKASTIILCTEMKN*CQAKSV
Trigger: GACACTTTTAGCTTGGCAGCAATTCTTCATTTCTGT...GCAGAGAATTATTGTACTAGCTTTGGAATCTTGTAGATCTGGGTCTATGTTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp CTGAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTAAAATATTGGTACAGTaGAAGAAGAGGCAGAACTAT +
Preference number: 4 (lower is better)
Translates to: LRCTPHFSTSLTLVHTSSKILVQ*KKRQNY
Trigger: ATAGTTCTGCCTCTTCTTGCACTGTACCAATATTTT...ACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp ATTATTTTTGGTGAAGGATCGGGAATACAGTTGATTGTCGCAGCCAAACTTATGCTTAACTTTCATTGTTaGTTTGTAGCCAGCAGGTAT +
Preference number: 4 (lower is better)
Translates to: IIFGEGSGIQLIVAAKLMLNFHC*FVASRY
Trigger: ATACCTGCTGGCTACAAAGCAACAATGAAAGTTAAG...CATAAGTTTGGCTGCGACAATCAACTGTATTCCCGATCCTTCACCAAAAATAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR GCA 90 bp GAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTATTTATAAGCATTATTaGCAGGTCATACTCCTTCCA +
Preference number: 4 (lower is better)
Translates to: EMHTSFFYFTHFSTYQQCIYKHY*QVILLP
Trigger: TGGAAGGAGTATGACCTGGCAATAATGCTTATAAAT...ACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp TCCAACATAGACCCAGATCTACAAGATTCCAAAGCTAGTACAATAATTCTCTGCATCTGTTATGATATTTaGACTTTTCCAGGGTCTCTC +
Preference number: 4 (lower is better)
Translates to: SNIDPDLQDSKASTIILCICYDI*TFPGSL
Trigger: GAGAGACCCTGGAAAAGTCCAAATATCATAACAGAT...GCAGAGAATTATTGTACTAGCTTTGGAATCTTGTAGATCTGGGTCTATGTTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
3UTR CAA 72 bp CATAATTTGTGTAAAGAATTCCAGGAATCTTGGTCTTaGCTTAAATTTCATGACTTCCTTCATGGCGCCCTT +
Preference number: 4 (lower is better)
Translates to: HNLCKEFQESWS*LKFHDFLHGAL
Trigger: AAGGGCGCCATGAAGGAAGTCATGAAATTTAAGCAAAGACCAAGATTCCTGGAATTCTTTACACAAATTATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
CDS-3UTR GCA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAAGCTCATGCCAATGATTaGTTTATCAAGGAGTTCATA +
Preference number: 4 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYEAHAND*FIKEFI
Trigger: TATGAACTCCTTGATAAAGCAATCATTGGCATGAGC...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCTTAAGTCTGAACTCTTaGCAATCTCGATCACTATGG +
Preference number: 4 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFLSLNS*QSRSLW
Trigger: CCATAGTGATCGAGATTGGCAAGAGTTCAGACTTAA...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR GCA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAAATAGAGTTTGTGCTCTaGAGCTTTATCAACATGTCA +
Preference number: 4 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYEIEFVL*SFINMS
Trigger: TGACATGTTGATAAAGCTGCAGAGCACAAACTCTAT...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp CACTTTAGTACATACCAGCAGTGTTATGAAATAGATACTCATATCCCACTCTATCAGCCATCTTTATCGTaGCCTCTCTGTAATATTTTC +
Preference number: 4 (lower is better)
Translates to: HFSTYQQCYEIDTHIPLYQPSLS*PLCNIF
Trigger: GAAAATATTACAGAGAGGCCACGATAAAGATGGCTG...ATAGAGTGGGATATGAGTATCTATTTCATAACACTGCTGGTATGTACTAAAGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR TCA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCATAGATATTTTCCTCTaGAGTAACTTCAGGAACCGA +
Preference number: 4 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFIDIFL*SNFRNR
Trigger: TCGGTTCCTGAAGTTACTTCAGAGGAAAATATCTAT...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
3UTR CAA 72 bp ATGAAACTTCTCATCGTTCATGCATTTGAGCATAATTaGTGTAAAGAATTCCAGGAATCTTGGTCTTTGCTT +
Preference number: 4 (lower is better)
Translates to: MKLLIVHAFEHN*CKEFQESWSLL
Trigger: AAGCAAAGACCAAGATTCCTGGAATTCTTTACACAAATTATGCTCAAATGCATGAACGATGAGAAGTTTCAT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
CDS-3UTR CCA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCTTAGATAATTTTCAATaGACTGTGTCTCCTTATCGG +
Preference number: 4 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFLDNFQ*TVSPYR
Trigger: CCGATAAGGAGACACAGTCCATTGAAAATTATCTAA...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCTCTGTATCTGTGGTTTaGTTGTGCTTCTTTTTCTTA +
Preference number: 4 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFSVSVV*LCFFFL
Trigger: TAAGAAAAAGAAGCACAACCAAACCACAGATACAGA...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CCA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCAGATGCATTTCTTTTTaGCGCAAAATCAATTCAGAG +
Preference number: 4 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFRCISF*RKINSE
Trigger: CTCTGAATTGATTTTGCGCCAAAAAGAAATGCATCT...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS CCA 90 bp CGGCGTTGGGGGCAGATGCACCGGCGACACCGATGTCTCAGAGTCTaGGGACTCCTCAGAAGAACTGGAGGAGCTTCTGGAGGACGCCAT +
Preference number: 5 (lower is better)
Translates to: RRWGQMHRRHRCLRV*GLLRRTGGASGGRH
Trigger: ATGGCGTCCTCCAGAAGCTCCTCCAGTTCTTCTGAGGAGTCCCCAGACTCTGAGACATCGGTGTCGCCGGTGCATCTGCCCCCAACGCCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS CCA 90 bp AAAGCCCAACAGCTCCCGGATCTCCTTCTCGCAAGAGGCCAGGAGTaGGTTTTTACTGTCCAGGGGCCCGTAGAAGGCGGCAGAGGGCAG +
Preference number: 5 (lower is better)
Translates to: KAQQLPDLLLARGQE*VFTVQGPVEGGRGQ
Trigger: CTGCCCTCTGCCGCCTTCTACGGGCCCCTGGACAGTAAAAACCCACTCCTGGCCTCTTGCGAGAAGGAGATCCGGGAGCTGTTGGGCTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS TCA 90 bp ACTGGCAGACGGCAGTGTAGAGAGTGGCTCTCCATGTCAGGTACCTaGTGGACAGGAGCGGGACAGAGGACTCCATGCACATGCTGGCCC +
Preference number: 5 (lower is better)
Translates to: TGRRQCREWLSMSGT*WTGAGQRTPCTCWP
Trigger: GGGCCAGCATGTGCATGGAGTCCTCTGTCCCGCTCCTGTCCATCAGGTACCTGACATGGAGAGCCACTCTCTACACTGCCGTCTGCCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS-3UTR CAA 90 bp GCACCTGGGACAGCAAGCTACGGAGAAAGACCGGGTCTCACTGCAGGTCGCACCTTGTTGCCTTGGTCATaGGAGGAGGGGGCTCATTGT +
Preference number: 5 (lower is better)
Translates to: APGTASYGERPGLTAGRTLLPWS*EEGAHC
Trigger: ACAATGAGCCCCCTCCTCCAATGACCAAGGCAACAA...GGTGCGACCTGCAGTGAGACCCGGTCTTTCTCCGTAGCTTGCTGTCCCAGGTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
CDS GCA 90 bp ACCACATCACGCAGCTCCATTTCGTCAGTAACCAGCGGTCCAGTCTaGAGGATCCGCCTGTTTGAGTCAGAGAGGGCTTCCAAGACAGCC +
Preference number: 5 (lower is better)
Translates to: TTSRSSISSVTSGPV*RIRLFESERASKTA
Trigger: GGCTGTCTTGGAAGCCCTCTCTGACTCAAACAGGCGGATCCTGCAGACTGGACCGCTGGTTACTGACGAAATGGAGCTGCGTGATGTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS-3UTR CAA 90 bp GAGCCCGTAGCACTGGGTCACTGCTTGGAGGGCGAAGTTGGCGTCATTGAGGAATTTCTGGGACCCCTTTaGAAGTCCCAGGCAACTCGT +
Preference number: 5 (lower is better)
Translates to: EPVALGHCLEGEVGVIEEFLGPL*KSQATR
Trigger: ACGAGTTGCCTGGGACTTCAAAAGGGGTCCCAGAAA...TTCCTCAATGACGCCAACTTCGCCCTCCAAGCAGTGACCCAGTGCTACGGGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
CDS TCA 90 bp AGCTCAGGGCCATTCAGCTCTTTTATCCTCTGGACCAGTTGGCGCTaGGCATACACCAACAGCGGGGTCACTTGCTCTGTGTACCTCTCA +
Preference number: 5 (lower is better)
Translates to: SSGPFSSFILWTSWR*AYTNSGVTCSVYLS
Trigger: TGAGAGGTACACAGAGCAAGTGACCCCGCTGTTGGTGTATGCTCAGCGCCAACTGGTCCAGAGGATAAAAGAGCTGAATGGCCCTGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 90 bp CAGGTGATCTTCTCTCCATTTTCAGCCTCGTATCTGGCGCAAGCCTaGCGGGAGAGCTCAGGGCCATTCAGCTCTTTTATCCTCTGGACC +
Preference number: 5 (lower is better)
Translates to: QVIFSPFSASYLAQA*RESSGPFSSFILWT
Trigger: GGTCCAGAGGATAAAAGAGCTGAATGGCCCTGAGCTCTCCCGTCAGGCTTGCGCCAGATACGAGGCTGAAAATGGAGAGAAGATCACCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS-3UTR CAA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCAGGTCGGCGGCGGCGTaGGGGGCAGATGCACCGGCG +
Preference number: 5 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFRSAAA*GADAPA
Trigger: CGCCGGTGCATCTGCCCCCAACGCCGCCGCCGACCT...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp TCCAGGGGACTCACCTGTATGCTGGCCTGTATCTCTGCAGGGCGATTGCTGCCAGATATCATCAAGAGCTaGGCTCCAGCATTTAAAAGC +
Preference number: 5 (lower is better)
Translates to: SRGLTCMLACISAGRLLPDIIKS*APAFKS
Trigger: GCTTTTAAATGCTGGAGCCAAGCTCTTGATGATATC...TGGCAGCAATCGCCCTGCAGAGATACAGGCCAGCATACAGGTGAGTCCCCTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR CAA 90 bp ATCATCAGCTTCATTCGGCCGCGAGATGGCGAGGAGCTAAGTCAAGCACACTTCGGAGGAGGGGGCTCATaGTCTTTGTCTTTGTTGTTG +
Preference number: 5 (lower is better)
Translates to: IISFIRPRDGEELSQAHFGGGGS*SLSLLL
Trigger: CAACAACAAAGACAAAGACAATGAGCCCCCTCCTCC...GAAGTGTGCTTGACTTAGCTCCTCGCCATCTCGCGGCCGAATGAAGCTGATGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
CDS-3UTR CAA 90 bp AGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCTCCTCATTCTGCAGGTaGGCATCGCTTTCGCAGACC +
Preference number: 5 (lower is better)
Translates to: SLLPLQLPIKCHSMLSYFSSFCR*ASLSQT
Trigger: GGTCTGCGAAAGCGATGCCAACCTGCAGAATGAGGA...GAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp GCTGCCAGGTGTAGCCTAGCCTCCACCATGATCTCCAGCTCCAAAACAGAGGACAACTTTAAGGCTCCTTaGATTGCTGGTTTGGAGAAC +
Preference number: 5 (lower is better)
Translates to: AARCSLASTMISSSKTEDNFKAP*IAGLEN
Trigger: GTTCTCCAAACCAGCAATCAAAGGAGCCTTAAAGTT...GTCCTCTGTTTTGGAGCTGGAGATCATGGTGGAGGCTAGGCTACACCTGGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR CAA 90 bp TGCAGCCCTTCAGTTTGCTTGCGCTCTGGTGACTGCAGGGAGCTCTCAGCCCTGTTGCCAGTAGAAACTTaGATATCTAAAATCCTCAGG +
Preference number: 5 (lower is better)
Translates to: CSPSVCLRSGDCRELSALLPVET*ISKILR
Trigger: CCTGAGGATTTTAGATATCAAAGTTTCTACTGGCAA...CAGGGCTGAGAGCTCCCTGCAGTCACCAGAGCGCAAGCAAACTGAAGGGCTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
CDS-3UTR CAA 90 bp GTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCGCGAAGTTGGCGTCATaGAGGAAGTTGCTGAGCTCC +
Preference number: 5 (lower is better)
Translates to: VKKPAPSPVTNQMSLHALAKLAS*RKLLSS
Trigger: GGAGCTCAGCAACTTCCTCAATGACGCCAACTTCGC...GAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS TCA 90 bp GAACCGCCATTTCTGATGAGATTTCTGTATAAGATGGGCAGACGGTaGGCTTGCCAGATAAGTCAGACTGCAGGGAGCTGTCCCGATGAA +
Preference number: 5 (lower is better)
Translates to: EPPFLMRFLYKMGRR*ACQISQTAGSCPDE
Trigger: TTCATCGGGACAGCTCCCTGCAGTCTGACTTATCTGGCAAGCTCACCGTCTGCCCATCTTATACAGAAATCTCATCAGAAATGGCGGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000163209.3
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 90 bp GCAGCTCGTATTGCGATCCAGGCCAGTGAGCTATACATCTCAGTTTaGGTTGCTACTGGGTCTTTAACAGAGCTGTGCCTTCTGGGAAGA +
Preference number: 5 (lower is better)
Translates to: AARIAIQASELYISV*VATGSLTELCLLGR
Trigger: TCTTCCCAGAAGGCACAGCTCTGTTAAAGACCCAGTAGCAACTCAAACTGAGATGTATAGCTCACTGGCCTGGATCGCAATACGAGCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 90 bp TTTCGGGAGGTTTCCAGAGACGACGAGGAGCTCATTAATTCCAGCTaGCTTAACTCATCAATTTTAGCTAGCGCACGCCGAGCAAATGCC +
Preference number: 5 (lower is better)
Translates to: FREVSRDDEELINSS*LNSSILASARRANA
Trigger: GGCATTTGCTCGGCGTGCGCTAGCTAAAATTGATGAGTTAAGGCAGCTGGAATTAATGAGCTCCTCGTCGTCTCTGGAAACCTCCCGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS GCA 90 bp TTTTCCCAACCTTTGGCAGGAGTGTTTGTGCTAACAGTTGGAGCCTaGAAAACTTCCAGTTGGTCAAGGAGCACAACGGCTATACGGTGC +
Preference number: 5 (lower is better)
Translates to: FSQPLAGVFVLTVGA*KTSSWSRSTTAIRC
Trigger: GCACCGTATAGCCGTTGTGCTCCTTGACCAACTGGAAGTTTTGCAGGCTCCAACTGTTAGCACAAACACTCCTGCCAAAGGTTGGGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS-3UTR CAA 90 bp GCTGCCAGGTGTAGCCTAGCCTCCACCATGATCTCCAGCTCCAAAACAGAGGACCCTTTGATTGCTGGTTaGGAGAACATCAATAGTTTG +
Preference number: 5 (lower is better)
Translates to: AARCSLASTMISSSKTEDPLIAG*ENINSL
Trigger: CAAACTATTGATGTTCTCCAAACCAGCAATCAAAGG...GTCCTCTGTTTTGGAGCTGGAGATCATGGTGGAGGCTAGGCTACACCTGGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR CAA 90 bp TGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCACTCGGGCAGACGGTGAGCTaGCCAGATAAGTCAGACTGC +
Preference number: 5 (lower is better)
Translates to: CSLTSSGLRCTPHFSTSLGQTVS*PDKSDC
Trigger: GCAGTCTGACTTATCTGGCAAGCTCACCGTCTGCCC...GAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp GTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCGCGTCATTGAGGAAGTaGCTGAGCTCCAGAGCTACT +
Preference number: 5 (lower is better)
Translates to: VKKPAPSPVTNQMSLHALASLRK*LSSRAT
Trigger: AGTAGCTCTGGAGCTCAGCAACTTCCTCAATGACGC...GAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp GCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCATCAGCTTCTGGGAAGAGGCTaGAGTGTTGTGGCTGAAGCC +
Preference number: 5 (lower is better)
Translates to: APSPVTNQMSLHALLLHQLLGRG*SVVAEA
Trigger: GGCTTCAGCCACAACACTCAAGCCTCTTCCCAGAAG...CTGATGAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS TCA 90 bp GCGATGAACGAAGTTACCAGCATCAAGCGGCACCTCAGCCAAAGGTaGATATTGAAGTATTCCCGGGAGTTCAGGGAAATGGGGTCTAAA +
Preference number: 5 (lower is better)
Translates to: AMNEVTSIKRHLSQR*ILKYSREFREMGSK
Trigger: TTTAGACCCCATTTCCCTGAACTCCCGGGAATACTTCAATATTCACCTTTGGCTGAGGTGCCGCTTGATGCTGGTAACTTCGTTCATCGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 90 bp ATTTCCTTAAGCTTTTGTATGATGTCTGCCTTAAAGTGCTTCTCCTaGAGGCCCAGGACCACAGCTTGCATTAGGAACTCGGCCAGGACC +
Preference number: 5 (lower is better)
Translates to: ISLSFCMMSALKCFS*RPRTTACIRNSART
Trigger: GGTCCTGGCCGAGTTCCTAATGCAAGCTGTGGTCCTGGGCCTTCAGGAGAAGCACTTTAAGGCAGACATCATACAAAAGCTTAAGGAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS-3UTR CAA 90 bp GAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTGTGCAGCAGCTCGTATaGCGATCCAGGCCAGTGAGC +
Preference number: 5 (lower is better)
Translates to: EMHTSFFYFTHFSTYQQCVQQLV*RSRPVS
Trigger: GCTCACTGGCCTGGATCGCAATACGAGCTGCTGCAC...ACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp GAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGACATCAAATGGAACCTaGGTCATTGGAGGAGGGGGC +
Preference number: 5 (lower is better)
Translates to: EQSKSLLPLQLPIKCHSMTSNGT*VIGGGG
Trigger: GCCCCCTCCTCCAATGACCAAGGTTCCATTTGATGT...CATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS TCA 90 bp GGTAAGGATATCTCGGCTATTTGTGCAAGATTAGATAGTTTCTGGTaGACTGCAATGACGCTCCTCAGTGGAATCCAGGAGGTGCCAACG +
Preference number: 5 (lower is better)
Translates to: GKDISAICARLDSFW*TAMTLLSGIQEVPT
Trigger: CGTTGGCACCTCCTGGATTCCACTGAGGAGCGTCATTGCAGTTCACCAGAAACTATCTAATCTTGCACAAATAGCCGAGATATCCTTACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000163209.3
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 90 bp ACGAAGTTACCAGCATCAAGCGGCACCTCAGCCAAAGGTGAATATTaGAGTATTCCCGGGAGTTCAGGGAAATGGGGTCTAAAAACTCAC +
Preference number: 5 (lower is better)
Translates to: TKLPASSGTSAKGEY*SIPGSSGKWGLKTH
Trigger: GTGAGTTTTTAGACCCCATTTCCCTGAACTCCCGGGAATACTTCAATATTCACCTTTGGCTGAGGTGCCGCTTGATGCTGGTAACTTCGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 90 bp AGATTCACTGACCTGTGCAGCAGCTCGTATTGCGATCCAGGCCAGTaGGCTATACATCTCAGTTTGAGTTGCTACTGGGTCTTTAACAGA +
Preference number: 5 (lower is better)
Translates to: RFTDLCSSSYCDPGQ*AIHLSLSCYWVFNR
Trigger: TCTGTTAAAGACCCAGTAGCAACTCAAACTGAGATGTATAGCTCACTGGCCTGGATCGCAATACGAGCTGCTGCACAGGTCAGTGAATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CCA 90 bp GCATATTTGGTCCAGATATTAAACAGCGTGGTGGCACACCTCCGATaGAATTCGTACTTCTGTTCCATTGAGGTGGCTAGAGCCTTCTTC +
Preference number: 5 (lower is better)
Translates to: AYLVQILNSVVAHLR*NSYFCSIEVARAFF
Trigger: GAAGAAGGCTCTAGCCACCTCAATGGAACAGAAGTACGAATTCCATCGGAGGTGTGCCACCACGCTGTTTAATATCTGGACCAAATATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS CCA 90 bp CTGGGTGATTTCGTACTGAGCATAGTTACGTTCGGCTTTGGGATGTaGGAGTGTAGTACGGAGCAGACTCTGAAAAAGCAATGCAGACAA +
Preference number: 5 (lower is better)
Translates to: LGDFVLSIVTFGFGM*ECSTEQTLKKQCRQ
Trigger: TTGTCTGCATTGCTTTTTCAGAGTCTGCTCCGTACTACACTCCCACATCCCAAAGCCGAACGTAACTATGCTCAGTACGAAATCACCCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000067705.8
ENSMUST00000164979.2
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS-3UTR CAA 90 bp GAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTGCAGGATCCGCCTGTTaGAGTCAGAGAGGGCTTCCA +
Preference number: 5 (lower is better)
Translates to: EMHTSFFYFTHFSTYQQCAGSAC*SQRGLP
Trigger: TGGAAGCCCTCTCTGACTCAAACAGGCGGATCCTGC...ACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp ACTCCATGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTCCTTCTCTGCTTTCTTaGACTGGGGGTTGTCCTGCT +
Preference number: 5 (lower is better)
Translates to: TPCSLTSSGLRCTPHFSTPSLLS*TGGCPA
Trigger: AGCAGGACAACCCCCAGTCAAAGAAAGCAGAGAAGG...AGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp GAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTGTGATCATCGCCGCTaGCAAACACCCCCAGATGCC +
Preference number: 5 (lower is better)
Translates to: EMHTSFFYFTHFSTYQQCCDHRR*QTPPDA
Trigger: GGCATCTGGGGGTGTTTGCAAGCGGCGATGATCACA...ACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp CTTCATTCGGCCGCGAGATGGCGAGGAGCTAAGTCAAGCACACTTCTGAGTGACTCATTGTCTTTGTCTTaGTTGTTGGAAAACAGAGCT +
Preference number: 5 (lower is better)
Translates to: LHSAARWRGAKSSTLLSDSLSLS*LLENRA
Trigger: AGCTCTGTTTTCCAACAACAAAGACAAAGACAATGA...GTCACTCAGAAGTGTGCTTGACTTAGCTCCTCGCCATCTCGCGGCCGAATGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
CDS-3UTR CAA 90 bp CATGGTCTTTGTCCCCTTGCTCTTCTAAGTTTATTTGTGACAGCCTTTGCACAGTCAGGAGTAGCGTTGTaGCCTTGGTCATTGGAGGAG +
Preference number: 5 (lower is better)
Translates to: HGLCPLALLSLFVTAFAQSGVAL*PWSLEE
Trigger: CTCCTCCAATGACCAAGGCAACAACGCTACTCCTGA...CTGTGCAAAGGCTGTCACAAATAAACTTAGAAGAGCAAGGGGACAAAGACCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
CDS-3UTR CAA 90 bp AGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCTTTGGGAGGTGGTTGTaGTTCAGCCTTACTTTCCCA +
Preference number: 5 (lower is better)
Translates to: SLLPLQLPIKCHSMLSYFFGRWL*FSLTFP
Trigger: TGGGAAAGTAAGGCTGAACAACAACCACCTCCCAAA...GAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp GCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCATCAGCTGATGTCCTTCTTCTaGCTGCTGGAACATACCTGC +
Preference number: 5 (lower is better)
Translates to: APSPVTNQMSLHALLLHQLMSFF*LLEHTC
Trigger: GCAGGTATGTTCCAGCAGCAAGAAGAAGGACATCAG...CTGATGAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS CCA 90 bp CTTTACTTTTTCCCAACCTTTGGCAGGAGTGTTTGTGCTAACAGTTaGAGCCTGCAAAACTTCCAGTTGGTCAAGGAGCACAACGGCTAT +
Preference number: 5 (lower is better)
Translates to: LYFFPTFGRSVCANS*SLQNFQLVKEHNGY
Trigger: ATAGCCGTTGTGCTCCTTGACCAACTGGAAGTTTTGCAGGCTCCAACTGTTAGCACAAACACTCCTGCCAAAGGTTGGGAAAAAGTAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CCA 90 bp AAAAAGTCTCTCGAGGCTGAATATAGCAGGCAGGGAGACATCAAATaGAACCTTGGTCATTGGAGGAGGGGGCTCATTGTCTTTGTCTTT +
Preference number: 5 (lower is better)
Translates to: KKSLEAEYSRQGDIK*NLGHWRRGLIVFVF
Trigger: AAAGACAAAGACAATGAGCCCCCTCCTCCAATGACCAAGGTTCCATTTGATGTCTCCCTGCCTGCTATATTCAGCCTCGAGAGACTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS-3UTR CAA 90 bp CATAATCTATCCTCATATAGTGACCTATCCTCAGAGGCTAGAAGGATGCCTAGCTGTGAGGAGGGAAGTTaGCTTTTCTCCACGGAGCTA +
Preference number: 5 (lower is better)
Translates to: HNLSSYSDLSSEARRMPSCEEGS*LFSTEL
Trigger: TAGCTCCGTGGAGAAAAGCAAACTTCCCTCCTCACA...GCTAGGCATCCTTCTAGCCTCTGAGGATAGGTCACTATATGAGGATAGATTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR CAA 90 bp ATTATTTTTGGTGAAGGATCGGGAATACAGTTGATTGTCGCAGCCAAACTTATGTGTGATCATCGCCGCTaGCAAACACCCCCAGATGCC +
Preference number: 5 (lower is better)
Translates to: IIFGEGSGIQLIVAAKLMCDHRR*QTPPDA
Trigger: GGCATCTGGGGGTGTTTGCAAGCGGCGATGATCACA...CATAAGTTTGGCTGCGACAATCAACTGTATTCCCGATCCTTCACCAAAAATAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR CAA 90 bp AGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCCCAACGTACAGGCTGTaGCCAGTAGAAACTTTGATA +
Preference number: 5 (lower is better)
Translates to: SLLPLQLPIKCHSMLSYFPTYRL*PVETLI
Trigger: TATCAAAGTTTCTACTGGCAACAGCCTGTACGTTGG...GAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp GAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGAACTTACTGGGAGACTaGAGTGCCCTCCTAGAAATG +
Preference number: 5 (lower is better)
Translates to: EQSKSLLPLQLPIKCHSMNLLGD*SALLEM
Trigger: CATTTCTAGGAGGGCACTCAAGTCTCCCAGTAAGTT...CATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp AGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCCTCAAATCTACCACGTaGACGTCATCCAAAGGATGT +
Preference number: 5 (lower is better)
Translates to: SLLPLQLPIKCHSMLSYFLKSTT*TSSKGC
Trigger: ACATCCTTTGGATGACGTCAACGTGGTAGATTTGAG...GAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp ACTCCATGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTAGCTCAGCCAGGTTCTaGGGTGTGGAAGAATCAATC +
Preference number: 5 (lower is better)
Translates to: TPCSLTSSGLRCTPHFSTSSARF*GVEESI
Trigger: GATTGATTCTTCCACACCCAAGAACCTGGCTGAGCT...AGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp ACTCCATGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTGTCGTCGGCACTCTTaGCCTCTGTGCATACTTCAT +
Preference number: 5 (lower is better)
Translates to: TPCSLTSSGLRCTPHFSTCRRHS*PLCILH
Trigger: ATGAAGTATGCACAGAGGCAAAGAGTGCCGACGACA...AGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS TCA 90 bp AGCATACACCAACAGCGGGGTCACTTGCTCTGTGTACCTCTCATGTaGAATAATATTGAACTGAATGGCAAGAGACACCAGAGTTTCCCA +
Preference number: 5 (lower is better)
Translates to: SIHQQRGHLLCVPLM*NNIELNGKRHQSFP
Trigger: TGGGAAACTCTGGTGTCTCTTGCCATTCAGTTCAATATTATTTCACATGAGAGGTACACAGAGCAAGTGACCCCGCTGTTGGTGTATGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 90 bp GCATTTCTTTTTGGCGCAAAATCAATTCAGAGTTGTACAGGGACGTaGGAAGTGTGTCATCAGGCAAAGAAATCCCTGAGACCGGAGTTG +
Preference number: 5 (lower is better)
Translates to: AFLFGAKSIQSCTGT*EVCHQAKKSLRPEL
Trigger: CAACTCCGGTCTCAGGGATTTCTTTGCCTGATGACACACTTCTCACGTCCCTGTACAACTCTGAATTGATTTTGCGCCAAAAAGAAATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 90 bp AAGAACACCCTGGGTAGGGACACAGACACAGAAATGAAGAATTGCTaGCAAGCTAAAAGTGTCTTCCGTGAATGTGGTCCTCATACAAGA +
Preference number: 5 (lower is better)
Translates to: KNTLGRDTDTEMKNC*QAKSVFRECGPHTR
Trigger: TCTTGTATGAGGACCACATTCACGGAAGACACTTTTAGCTTGGCAGCAATTCTTCATTTCTGTGTCTGTGTCCCTACCCAGGGTGTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS GCA 90 bp ATCAAGAGCTTGGCTCCAGCATTTAAAAGCAGCCCTTTTCTTATCTaGAAAGAGGAGGAGGCTTCCAAGAGAATGCAGGGACTGAACTTT +
Preference number: 5 (lower is better)
Translates to: IKSLAPAFKSSPFLI*KEEEASKRMQGLNF
Trigger: AAAGTTCAGTCCCTGCATTCTCTTGGAAGCCTCCTCCTCTTTGCAGATAAGAAAAGGGCTGCTTTTAAATGCTGGAGCCAAGCTCTTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000067705.8
ENSMUST00000164979.2
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 90 bp GCAGTCTTAATAAACTGCGCTATCTTCGCTGTGATCATCGCCGCTTaGAAACACCCCCAGATGCCAAATTTCGATAGAAATTCTTCACTG +
Preference number: 5 (lower is better)
Translates to: AVLINCAIFAVIIAA*KHPQMPNFDRNSSL
Trigger: CAGTGAAGAATTTCTATCGAAATTTGGCATCTGGGGGTGTTTGCAAGCGGCGATGATCACAGCGAAGATAGCGCAGTTTATTAAGACTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000067705.8
ENSMUST00000164979.2
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 90 bp CCCTTCCAGCAAACTGATAATTTCCTTAAGCTTTTGTATGATGTCTaGCTTAAAGTGCTTCTCCTGAAGGCCCAGGACCACAGCTTGCAT +
Preference number: 5 (lower is better)
Translates to: PFQQTDNFLKLLYDV*LKVLLLKAQDHSLH
Trigger: ATGCAAGCTGTGGTCCTGGGCCTTCAGGAGAAGCACTTTAAGGCAGACATCATACAAAAGCTTAAGGAAATTATCAGTTTGCTGGAAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS-3UTR CAA 90 bp GAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTTTCTGGGACCCCTTTaGAAGTCCCAGGCAACTCGT +
Preference number: 5 (lower is better)
Translates to: EMHTSFFYFTHFSTYQQCFLGPL*KSQATR
Trigger: ACGAGTTGCCTGGGACTTCAAAAGGGGTCCCAGAAA...ACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp ACTCCATGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTGTGCTCGCTTTAATATaGGAAGGATTTCTGGGACCC +
Preference number: 5 (lower is better)
Translates to: TPCSLTSSGLRCTPHFSTVLALI*EGFLGP
Trigger: GGGTCCCAGAAATCCTTCCAATATTAAAGCGAGCAC...AGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp AGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCCAAGATGTAGGTCCATaGTGTAGCTGTTTGATGCAA +
Preference number: 5 (lower is better)
Translates to: SLLPLQLPIKCHSMLSYFQDVGP*CSCLMQ
Trigger: TTGCATCAAACAGCTACACAATGGACCTACATCTTG...GAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp GTATTAGTCACTGTAGATATCCCAGTTCTAAGTATTTGCTTGTATCAGGCTCTTGGGCAGACGGTGAGCTaGCCAGATAAGTCAGACTGC +
Preference number: 5 (lower is better)
Translates to: VLVTVDIPVLSICLYQALGQTVS*PDKSDC
Trigger: GCAGTCTGACTTATCTGGCAAGCTCACCGTCTGCCC...AAGAGCCTGATACAAGCAAATACTTAGAACTGGGATATCTACAGTGACTAATAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
CDS-3UTR CAA 90 bp GTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCGATAGTTCAGCTGAGTaGATTTGCTTTGTCGTCTTG +
Preference number: 5 (lower is better)
Translates to: VKKPAPSPVTNQMSLHALDSSAE*ICFVVL
Trigger: CAAGACGACAAAGCAAATCAACTCAGCTGAACTATC...GAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGCTGACGTCCGTTCTCTaGTTTCTGTCCAGCTCTGCC +
Preference number: 5 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMLTSVL*FLSSSA
Trigger: GGCAGAGCTGGACAGAAACAAGAGAACGGACGTCAG...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp TGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCACTCGTGGAAGAATCAATCTaGAGGCGCTTCCCAATGAAG +
Preference number: 5 (lower is better)
Translates to: CSLTSSGLRCTPHFSTSLVEESI*RRFPMK
Trigger: CTTCATTGGGAAGCGCCTCAAGATTGATTCTTCCAC...GAGTGAAGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCTCCGACAGCAGGGAGTaGACCTTCTCCTCTGCCTCC +
Preference number: 5 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFSDSRE*TFSSAS
Trigger: GGAGGCAGAGGAGAAGGTCAACTCCCTGCTGTCGGA...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS TCA 90 bp TTTTCGGGCTTCCCAAAGACTCTAGTATTTCACTTAATCGTAACGTaGTCTCCGCCACCATCACAATGTCCAGGTCTTCCAGTTTATAGC +
Preference number: 5 (lower is better)
Translates to: FSGFPKTLVFHLIVT*SPPPSQCPGLPVYS
Trigger: GCTATAAACTGGAAGACCTGGACATTGTGATGGTGGCGGAGATCACGTTACGATTAAGTGAAATACTAGAGTCTTTGGGAAGCCCGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000170065.8
ENSMUST00000212902.2
CDS TCA 90 bp GAGACTTCAACACAAAGTCATGGATCCATCTCAAATCTACCACGTTaGCGTCATCCAAAGGATGTTCAAAGATCAGGCTGGAACCTCCAT +
Preference number: 5 (lower is better)
Translates to: ETSTQSHGSISNLPR*RHPKDVQRSGWNLH
Trigger: ATGGAGGTTCCAGCCTGATCTTTGAACATCCTTTGGATGACGTCAACGTGGTAGATTTGAGATGGATCCATGACTTTGTGTTGAAGTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 90 bp GGGGTCACTTGCTCTGTGTACCTCTCATGTGAAATAATATTGAACTaGATGGCAAGAGACACCAGAGTTTCCCACTTCTCCACTTGGTAT +
Preference number: 5 (lower is better)
Translates to: GVTCSVYLSCEIILN*MARDTRVSHFSTWY
Trigger: ATACCAAGTGGAGAAGTGGGAAACTCTGGTGTCTCTTGCCATTCAGTTCAATATTATTTCACATGAGAGGTACACAGAGCAAGTGACCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS-3UTR CAA 90 bp GAAGTTTTCTTAGAACAAACACCCTCCTCTGCAGTTTCCTCTTGCTCAATACCAGTGCTCGCTTTAATATaGGAAGGATTTCTGGGACCC +
Preference number: 5 (lower is better)
Translates to: EVFLEQTPSSAVSSCSIPVLALI*EGFLGP
Trigger: GGGTCCCAGAAATCCTTCCAATATTAAAGCGAGCAC...TGGTATTGAGCAAGAGGAAACTGCAGAGGAGGGTGTTTGTTCTAAGAAAACTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
CDS-3UTR CAA 90 bp AACAAACACCCTCCTCTGCAGTTTCCTCTTGCTCAATACCAAAAAGAGACCTGCCAAGATGTAGGTCCATaGTGTAGCTGTTTGATGCAA +
Preference number: 5 (lower is better)
Translates to: NKHPPLQFPLAQYQKETCQDVGP*CSCLMQ
Trigger: TTGCATCAAACAGCTACACAATGGACCTACATCTTG...GCAGGTCTCTTTTTGGTATTGAGCAAGAGGAAACTGCAGAGGAGGGTGTTTGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170065.8
CDS-3UTR CAA 90 bp CTGAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGGAGGAGGGGGCTCATaGTCTTTGTCTTTGTTGTTG +
Preference number: 5 (lower is better)
Translates to: LRCTPHFSTSLTLVHTSSGGGGS*SLSLLL
Trigger: CAACAACAAAGACAAAGACAATGAGCCCCCTCCTCC...ACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp TCCAACATAGACCCAGATCTACAAGATTCCAAAGCTAGTACAATAATTCTCTGCCTGCAAAACTTCCAGTaGGTCAAGGAGCACAACGGC +
Preference number: 5 (lower is better)
Translates to: SNIDPDLQDSKASTIILCLQNFQ*VKEHNG
Trigger: GCCGTTGTGCTCCTTGACCAACTGGAAGTTTTGCAG...GCAGAGAATTATTGTACTAGCTTTGGAATCTTGTAGATCTGGGTCTATGTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp GTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCATGGCTTTGGACAGCTaGTTCTTCTTTATCTTCTTC +
Preference number: 5 (lower is better)
Translates to: VKKPAPSPVTNQMSLHALMALDS*FFFIFF
Trigger: GAAGAAGATAAAGAAGAACAAGCTGTCCAAAGCCAT...GAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp GAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTGAAGCCTTCCTCTTaGGCTTCTTCAGATAGAAAT +
Preference number: 5 (lower is better)
Translates to: EQSKSLLPLQLPIKCHSMLKPSS*ASSDRN
Trigger: ATTTCTATCTGAAGAAGCCAAAGAGGAAGGCTTCAG...CATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp GCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCATCAGCTTGAAGAAGTTCCCTaGGAAATCCATCAATGCATG +
Preference number: 5 (lower is better)
Translates to: APSPVTNQMSLHALLLHQLEEVP*EIHQCM
Trigger: CATGCATTGATGGATTTCCAAGGGAACTTCTTCAAG...CTGATGAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp TCCAACATAGACCCAGATCTACAAGATTCCAAAGCTAGTACAATAATTCTCTGCATGGAACCTTGGTCATaGGAGGAGGGGGCTCATTGT +
Preference number: 5 (lower is better)
Translates to: SNIDPDLQDSKASTIILCMEPWS*EEGAHC
Trigger: ACAATGAGCCCCCTCCTCCAATGACCAAGGTTCCAT...GCAGAGAATTATTGTACTAGCTTTGGAATCTTGTAGATCTGGGTCTATGTTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS GCA 90 bp ATACAACAGTTGATTCTTTTCTTAACATTCGCAGTCTTAATAAACTaGGCTATCTTCGCTGTGATCATCGCCGCTTGCAAACACCCCCAG +
Preference number: 5 (lower is better)
Translates to: IQQLILFLTFAVLIN*AIFAVIIAACKHPQ
Trigger: CTGGGGGTGTTTGCAAGCGGCGATGATCACAGCGAAGATAGCGCAGTTTATTAAGACTGCGAATGTTAAGAAAAGAATCAACTGTTGTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000067705.8
ENSMUST00000164979.2
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CCA 90 bp TTCTCCACTTGGTATAGAACCTCCAGAGACTTCAACACAAAGTCATaGATCCATCTCAAATCTACCACGTTGACGTCATCCAAAGGATGT +
Preference number: 5 (lower is better)
Translates to: FSTWYRTSRDFNTKS*IHLKSTTLTSSKGC
Trigger: ACATCCTTTGGATGACGTCAACGTGGTAGATTTGAGATGGATCCATGACTTTGTGTTGAAGTCTCTGGAGGTTCTATACCAAGTGGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS-3UTR CAA 90 bp AGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCATTTCTGACTATGTCTaGGCAAATGACAGACACAAA +
Preference number: 5 (lower is better)
Translates to: SLLPLQLPIKCHSMLSYFISDYV*ANDRHK
Trigger: TTTGTGTCTGTCATTTGCCAAGACATAGTCAGAAAT...GAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp AGGCAGAGAACATGGTTTCCCTCTTCTTCTAGCTTTGAGACCAAAAGACCAAATCCAACGTACAGGCTGTaGCCAGTAGAAACTTTGATA +
Preference number: 5 (lower is better)
Translates to: RQRTWFPSSSSFETKRPNPTYRL*PVETLI
Trigger: TATCAAAGTTTCTACTGGCAACAGCCTGTACGTTGG...ATTTGGTCTTTTGGTCTCAAAGCTAGAAGAAGAGGGAAACCATGTTCTCTGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
CDS-3UTR CAA 90 bp CTGAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGAGTTTGGGAGGTGGTaGTTGTTCAGCCTTACTTTC +
Preference number: 5 (lower is better)
Translates to: LRCTPHFSTSLTLVHTSSEFGRW*LFSLTF
Trigger: GAAAGTAAGGCTGAACAACAACCACCTCCCAAACTC...ACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp AGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCTTACTTCCAGGAATCTTGGTCTTaGCTTAAATTTCATGACTTC +
Preference number: 5 (lower is better)
Translates to: SLLPLQLPIKCHSMLSYFQESWS*LKFHDF
Trigger: GAAGTCATGAAATTTAAGCAAAGACCAAGATTCCTG...GAAGTAAGAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp GTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCACTCCATGCTCTCGTTTGTGTTTTCATCTaGGGAATGTTATCATCGCTT +
Preference number: 5 (lower is better)
Translates to: VKKPAPSPVTNQMSLHALVCVFI*GMLSSL
Trigger: AAGCGATGATAACATTCCCAAGATGAAAACACAAAC...GAGAGCATGGAGTGACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp GAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTAGCCTGGGAGCATATTaGGTCCAGATATTAAACAGC +
Preference number: 5 (lower is better)
Translates to: EMHTSFFYFTHFSTYQQCSLGAY*VQILNS
Trigger: GCTGTTTAATATCTGGACCAAATATGCTCCCAGGCT...ACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp ATGCTAGGTGAACAGTCAAAAAGCCTGCTCCCTCTCCAGTTACCAATCAAATGTCCAAATTCTTTCCAGTaGTGTAGCACATCTGGTTTT +
Preference number: 5 (lower is better)
Translates to: MLGEQSKSLLPLQLPIKCPNSFQ*CSTSGF
Trigger: AAAACCAGATGTGCTACACAACTGGAAAGAATTTGG...ACATTTGATTGGTAACTGGAGAGGGAGCAGGCTTTTTGACTGTTCACCTAGCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp TGTCCCCTTGCTCTTCTAAGTTTATTTGTGACAGCCTTTGCACAGCAGTATTTAGGGGGCTCATTGTCTTaGTCTTTGTTGTTGGAAAAC +
Preference number: 5 (lower is better)
Translates to: CPLALLSLFVTAFAQQYLGGSLS*SLLLEN
Trigger: GTTTTCCAACAACAAAGACAAAGACAATGAGCCCCC...TAAATACTGCTGTGCAAAGGCTGTCACAAATAAACTTAGAAGAGCAAGGGGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
CDS-3UTR CAA 90 bp GAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTATTGACACCATCCAGTaGAAAAGGCTTCCTACTGAC +
Preference number: 5 (lower is better)
Translates to: EMHTSFFYFTHFSTYQQCIDTIQ*KRLPTD
Trigger: GTCAGTAGGAAGCCTTTTCAACTGGATGGTGTCAAT...ACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS TCA 90 bp TTACGTTCGGCTTTGGGATGTGGGAGTGTAGTACGGAGCAGACTCTaGAAAAGCAATGCAGACAATATACAACAGTTGATTCTTTTCTTA +
Preference number: 5 (lower is better)
Translates to: LRSALGCGSVVRSRL*KSNADNIQQLILFL
Trigger: TAAGAAAAGAATCAACTGTTGTATATTGTCTGCATTGCTTTTTCAGAGTCTGCTCCGTACTACACTCCCACATCCCAAAGCCGAACGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000067705.8
ENSMUST00000164979.2
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 90 bp TGCCTGCATGTTGTCTTTATGGGTGAGAGGTTTTCCAGAATCGAATaGTTGAGTTATCTTAACTTTCATTGTTGCTTTGTAGCCAGCAGG +
Preference number: 5 (lower is better)
Translates to: CLHVVFMGERFSRIE*LSYLNFHCCFVASR
Trigger: CCTGCTGGCTACAAAGCAACAATGAAAGTTAAGATAACTCAATCATTCGATTCTGGAAAACCTCTCACCCATAAAGACAACATGCAGGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 90 bp GAAATACACCAGGGCGATTTCGAGGTAGGAATCCCTTATCAACCCTaGGTTCTGATCGTTTTTCAGGCTTATTTGAATAGCTTCGAAAAA +
Preference number: 5 (lower is better)
Translates to: EIHQGDFEVGIPYQP*VLIVFQAYLNSFEK
Trigger: TTTTTCGAAGCTATTCAAATAAGCCTGAAAAACGATCAGAACTCAGGGTTGATAAGGGATTCCTACCTCGAAATCGCCCTGGTGTATTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 90 bp TCTGACTATGTCTTGGCAAATGACAGACACAAAATATTGGTACAGTaGAAGAAGAGGCAGAACTATGAGGTTGTACTTAGCATAGTGCAG +
Preference number: 5 (lower is better)
Translates to: SDYVLANDRHKILVQ*KKRQNYEVVLSIVQ
Trigger: CTGCACTATGCTAAGTACAACCTCATAGTTCTGCCTCTTCTTGCACTGTACCAATATTTTGTGTCTGTCATTTGCCAAGACATAGTCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067705.8
ENSMUST00000164979.2
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 90 bp CTCTTTCATCTTGTGTCTGTGCAAGAAATAAAGAAAGCAGCTTTCTaGTGTGTCGGACTGATCTGTTATGATATTTGGACTTTTCCAGGG +
Preference number: 5 (lower is better)
Translates to: LFHLVSVQEIKKAAF*CVGLICYDIWTFPG
Trigger: CCCTGGAAAAGTCCAAATATCATAACAGATCAGTCCGACACAGCAGAAAGCTGCTTTCTTTATTTCTTGCACAGACACAAGATGAAAGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212902.2
CDS-3UTR CAA 90 bp CACTTTAGTACATACCAGCAGTGTTATGAAATAGATACTCATATCCCACTCTATCGTACTTCTGTTCCATaGAGGTGGCTAGAGCCTTCT +
Preference number: 5 (lower is better)
Translates to: HFSTYQQCYEIDTHIPLYRTSVP*RWLEPS
Trigger: AGAAGGCTCTAGCCACCTCAATGGAACAGAAGTACG...ATAGAGTGGGATATGAGTATCTATTTCATAACACTGCTGGTATGTACTAAAGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp TTTACACCATCAGTCTCTAGAGCAGAGTGTCACAGTGAGCTAGCTAAGGAAAGAATTTCTGACTATGTCTaGGCAAATGACAGACACAAA +
Preference number: 5 (lower is better)
Translates to: FTPSVSRAECHSELAKERISDYV*ANDRHK
Trigger: TTTGTGTCTGTCATTTGCCAAGACATAGTCAGAAAT...TCTTTCCTTAGCTAGCTCACTGTGACACTCTGCTCTAGAGACTGATGGTGTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR CAA 90 bp CATGGTCTTTGTCCCCTTGCTCTTCTAAGTTTATTTGTGACAGCCTTTGCACAGTTGTCTTTGTCTTTGTaGTTGGAAAACAGAGCTTCT +
Preference number: 5 (lower is better)
Translates to: HGLCPLALLSLFVTAFAQLSLSL*LENRAS
Trigger: AGAAGCTCTGTTTTCCAACAACAAAGACAAAGACAA...CTGTGCAAAGGCTGTCACAAATAAACTTAGAAGAGCAAGGGGACAAAGACCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
CDS-3UTR CAA 90 bp ACTCCATGCTCTCTTACTTCATCAGGCCTGAGATGCACACCTCATTTTTCTACTTCATTGTCTTTGTCTTaGTTGTTGGAAAACAGAGCT +
Preference number: 5 (lower is better)
Translates to: TPCSLTSSGLRCTPHFSTSLSLS*LLENRA
Trigger: AGCTCTGTTTTCCAACAACAAAGACAAAGACAATGA...AGTAGAAAAATGAGGTGTGCATCTCAGGCCTGATGAAGTAAGAGAGCATGGAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp CACTTTAGTACATACCAGCAGTGTTATGAAATAGATACTCATATCCCACTCTATTCGCTTCTCCTGAGTTaGGGAGGTGGTTGTTGTTCA +
Preference number: 5 (lower is better)
Translates to: HFSTYQQCYEIDTHIPLYSLLLS*GGGCCS
Trigger: TGAACAACAACCACCTCCCAAACTCAGGAGAAGCGA...ATAGAGTGGGATATGAGTATCTATTTCATAACACTGCTGGTATGTACTAAAGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS GCA 90 bp TTTGGGATGTGGGAGTGTAGTACGGAGCAGACTCTGAAAAAGCAATaGAGACAATATACAACAGTTGATTCTTTTCTTAACATTCGCAGT +
Preference number: 5 (lower is better)
Translates to: FGMWECSTEQTLKKQ*RQYTTVDSFLNIRS
Trigger: ACTGCGAATGTTAAGAAAAGAATCAACTGTTGTATATTGTCTGCATTGCTTTTTCAGAGTCTGCTCCGTACTACACTCCCACATCCCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000067705.8
ENSMUST00000164979.2
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CCA 90 bp CTGCGTCTTTCTCAAACAGTAAAAGAGCCTTCTGCATCAGGTAGATaGCTTTGGACAGCTTGTTCTTCTTTATCTTCTTCATTACAGTTA +
Preference number: 5 (lower is better)
Translates to: LRLSQTVKEPSASGR*LWTACSSLSSSLQL
Trigger: TAACTGTAATGAAGAAGATAAAGAAGAACAAGCTGTCCAAAGCCATCTACCTGATGCAGAAGGCTCTTTTACTGTTTGAGAAAGACGCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS-3UTR CAA 90 bp TCCAACATAGACCCAGATCTACAAGATTCCAAAGCTAGTACAATAATTCTCTGCTCGAATACTCCTCTTTaGAAGATCATCACAGCCATC +
Preference number: 5 (lower is better)
Translates to: SNIDPDLQDSKASTIILCSNTPL*KIITAI
Trigger: GATGGCTGTGATGATCTTCAAAAGAGGAGTATTCGA...GCAGAGAATTATTGTACTAGCTTTGGAATCTTGTAGATCTGGGTCTATGTTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGCTGTTTCTCTTCACATaGATCAATGGTTCGACTGCA +
Preference number: 5 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMLFLFT*INGSTA
Trigger: TGCAGTCGAACCATTGATCAATGTGAAGAGAAACAG...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAAGGGGGCTCATTGTCTTaGTCTTTGTTGTTGGAAAAC +
Preference number: 5 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYEGGSLS*SLLLEN
Trigger: GTTTTCCAACAACAAAGACAAAGACAATGAGCCCCC...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCACAGAGACAAGCTGTTaGGCTAGTCTCTGCTCTGAA +
Preference number: 5 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFTETSC*ASLCSE
Trigger: TTCAGAGCAGAGACTAGCCAAACAGCTTGTCTCTGT...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCTCAAGTGCCTGCATGTaGTCTTTATGGGTGAGAGGT +
Preference number: 5 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFSSACM*SLWVRG
Trigger: ACCTCTCACCCATAAAGACAACATGCAGGCACTTGA...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCTCGGGCACTTTCTTTTaGAACACCTTCGAATCCTGG +
Preference number: 5 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFSGTFF*NTFESW
Trigger: CCAGGATTCGAAGGTGTTCAAAAAGAAAGTGCCCGA...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS TCA 90 bp TATCGGTTTCCAAAGGAAAGATCAAACCTCTGTTTCTCTTCACATTaGTCAATGGTTCGACTGCAAGCAGAAGAATTAAATCCTTCTCTG +
Preference number: 5 (lower is better)
Translates to: YRFPKERSNLCFSSH*SMVRLQAEELNPSL
Trigger: CAGAGAAGGATTTAATTCTTCTGCTTGCAGTCGAACCATTGATCAATGTGAAGAGAAACAGAGGTTTGATCTTTCCTTTGGAAACCGATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS TCA 90 bp TGGACAGCTTGTTCTTCTTTATCTTCTTCATTACAGTTAACTCTGTaGAACACTCAGTGCTTCTGGGCTTCTTTACTTTTTCCCAACCTT +
Preference number: 5 (lower is better)
Translates to: WTACSSLSSSLQLTL*NTQCFWASLLFPNL
Trigger: AAGGTTGGGAAAAAGTAAAGAAGCCCAGAAGCACTGAGTGTTTCACAGAGTTAACTGTAATGAAGAAGATAAAGAAGAACAAGCTGTCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CCA 90 bp CTTTCTCAAACAGTAAAAGAGCCTTCTGCATCAGGTAGATGGCTTTaGACAGCTTGTTCTTCTTTATCTTCTTCATTACAGTTAACTCTG +
Preference number: 5 (lower is better)
Translates to: LSQTVKEPSASGRWL*TACSSLSSSLQLTL
Trigger: CAGAGTTAACTGTAATGAAGAAGATAAAGAAGAACAAGCTGTCCAAAGCCATCTACCTGATGCAGAAGGCTCTTTTACTGTTTGAGAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS-3UTR CAA 90 bp TCCAACATAGACCCAGATCTACAAGATTCCAAAGCTAGTACAATAATTCTCTGCCTTGTATTCTTTTATTaGACAGAGGCTGTCTCCAAC +
Preference number: 5 (lower is better)
Translates to: SNIDPDLQDSKASTIILCLVFFY*TEAVSN
Trigger: GTTGGAGACAGCCTCTGTCAAATAAAAGAATACAAG...GCAGAGAATTATTGTACTAGCTTTGGAATCTTGTAGATCTGGGTCTATGTTGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp GAGATGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTTGCCAGTAGAAACTTaGATATCTAAAATCCTCAGG +
Preference number: 5 (lower is better)
Translates to: EMHTSFFYFTHFSTYQQCLPVET*ISKILR
Trigger: CCTGAGGATTTTAGATATCAAAGTTTCTACTGGCAA...ACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCATCTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCACTTTTTCCCAACCTTaGGCAGGAGTGTTTGTGCTA +
Preference number: 5 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFTFSQP*AGVFVL
Trigger: TAGCACAAACACTCCTGCCAAAGGTTGGGAAAAAGT...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp CACTTTAGTACATACCAGCAGTGTTATGAAATAGATACTCATATCCCACTCTATTGTCTACAGTCAGCTTaGCTGTTGGTAACACTGTTC +
Preference number: 5 (lower is better)
Translates to: HFSTYQQCYEIDTHIPLYCLQSA*LLVTLF
Trigger: GAACAGTGTTACCAACAGCAAAGCTGACTGTAGACA...ATAGAGTGGGATATGAGTATCTATTTCATAACACTGCTGGTATGTACTAAAGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGGTATCTGTGGTTTGGTaGTGCTTCTTTTTCTTAGAG +
Preference number: 5 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMVSVVW*CFFFLE
Trigger: CTCTAAGAAAAAGAAGCACAACCAAACCACAGATAC...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGGGTAGTACATTATTTTaGGTGAAGGATCGGGAATAC +
Preference number: 5 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMGSTLF*VKDREY
Trigger: GTATTCCCGATCCTTCACCAAAAATAATGTACTACC...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS GCA 90 bp GAATTGAAAAGTACAGATAAATCTTCTGTATCTGTGGTTTGGTTGTaGTTCTTTTTCTTAGAGACAGTGAGGGCATCCATCATTGCATTG +
Preference number: 5 (lower is better)
Translates to: ELKSTDKSSVSVVWL*FFFLETVRASIIAL
Trigger: CAATGCAATGATGGATGCCCTCACTGTCTCTAAGAAAAAGAAGCACAACCAAACCACAGATACAGAAGATTTATCTGTACTTTTCAATTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS-3UTR CAA 90 bp CACTTTAGTACATACCAGCAGTGTTATGAAATAGATACTCATATCCCACTCTATAACTTTAAGGCTCCTTaGATTGCTGGTTTGGAGAAC +
Preference number: 5 (lower is better)
Translates to: HFSTYQQCYEIDTHIPLYNFKAP*IAGLEN
Trigger: GTTCTCCAAACCAGCAATCAAAGGAGCCTTAAAGTT...ATAGAGTGGGATATGAGTATCTATTTCATAACACTGCTGGTATGTACTAAAGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp CACTTTAGTACATACCAGCAGTGTTATGAAATAGATACTCATATCCCACTCTATGATATCATCAAGAGCTaGGCTCCAGCATTTAAAAGC +
Preference number: 5 (lower is better)
Translates to: HFSTYQQCYEIDTHIPLYDIIKS*APAFKS
Trigger: GCTTTTAAATGCTGGAGCCAAGCTCTTGATGATATC...ATAGAGTGGGATATGAGTATCTATTTCATAACACTGCTGGTATGTACTAAAGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCACCTGCTGTGGCTTCTaGGTTCTTGAAGTTTTCTTA +
Preference number: 5 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFTCCGF*VLEVFL
Trigger: TAAGAAAACTTCAAGAACCAAGAAGCCACAGCAGGT...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp CACTTTAGTACATACCAGCAGTGTTATGAAATAGATACTCATATCCCACTCTATTCGCACATAAGTGAGTaGGAAGTCTGGAAAACAACT +
Preference number: 5 (lower is better)
Translates to: HFSTYQQCYEIDTHIPLYSHISE*EVWKTT
Trigger: AGTTGTTTTCCAGACTTCCAACTCACTTATGTGCGA...ATAGAGTGGGATATGAGTATCTATTTCATAACACTGCTGGTATGTACTAAAGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAAAAAATCAATTCAGAGTaGTACAGGGACGTGAGAAGT +
Preference number: 5 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYEKINSE*YRDVRS
Trigger: ACTTCTCACGTCCCTGTACAACTCTGAATTGATTTT...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
38% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp TGCACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAATGTTTTCCAAACCTaGAAGAAGTTCCCTTGGAAA +
Preference number: 5 (lower is better)
Translates to: CTPHFSTSLTLVHTSSVMNVFQT*KKFPWK
Trigger: TTTCCAAGGGAACTTCTTCAAGGTTTGGAAAACATT...CATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS GCA 90 bp AAATGTTTTCCAAACCTTGAAGAAGTTCCCTTGGAAATCCATCAATaGATGAAGAAGAGTAGAGCTGTAAGAATCGTTTCAGGAAAAGAT +
Preference number: 5 (lower is better)
Translates to: KCFPNLEEVPLEIHQ*MKKSRAVRIVSGKD
Trigger: ATCTTTTCCTGAAACGATTCTTACAGCTCTACTCTTCTTCATGCATTGATGGATTTCCAAGGGAACTTCTTCAAGGTTTGGAAAACATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS-3UTR CAA 90 bp GTCTCAGATGATGCTACTTTCAAAGAAGTAAACCTCCTTTGTCTTGCTTTTATTCCAAATTCTTTCCAGTaGTGTAGCACATCTGGTTTT +
Preference number: 5 (lower is better)
Translates to: VSDDATFKEVNLLCLAFIPNSFQ*CSTSGF
Trigger: AAAACCAGATGTGCTACACAACTGGAAAGAATTTGG...AATAAAAGCAAGACAAAGGAGGTTTACTTCTTTGAAAGTAGCATCATCTGAGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067705.8
CDS-3UTR CAA 90 bp CACACCTCATTTTTCTACTTCACTCACTTTAGTACATACCAGCAGTGTTATGAATTGTCTTTGTCTTTGTaGTTGGAAAACAGAGCTTCT +
Preference number: 5 (lower is better)
Translates to: HTSFFYFTHFSTYQQCYELSLSL*LENRAS
Trigger: AGAAGCTCTGTTTTCCAACAACAAAGACAAAGACAA...TTCATAACACTGCTGGTATGTACTAAAGTGAGTGAAGTAGAAAAATGAGGTGTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCTGCTCTTCTTTATTTTaGAGCTCCCCAAGAACTTCT +
Preference number: 5 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFCSSLF*SSPRTS
Trigger: AGAAGTTCTTGGGGAGCTCAAAAATAAAGAAGAGCA...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS-3UTR CAA 90 bp ATAAGAATTGAAGCTAATTCTTTAAAGATATGGAGCAAGCAGGTGGTGAAGTTCTTCTGTATCTGTGGTTaGGTTGTGCTTCTTTTTCTT +
Preference number: 5 (lower is better)
Translates to: IRIEANSLKIWSKQVVKFFCICG*VVLLFL
Trigger: AAGAAAAAGAAGCACAACCAAACCACAGATACAGAA...GAACTTCACCACCTGCTTGCTCCATATCTTTAAAGAATTAGCTTCAATTCTTAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168110.8
CDS CCA 72 bp CAGCTCCCGGATCTCCTTCTCGCAAGAGGCCAGGAGTaGGTTTTTACTGTCCAGGGGCCCGTAGAAGGCGGC +
Preference number: 6 (lower is better)
Translates to: QLPDLLLARGQE*VFTVQGPVEGG
Trigger: GCCGCCTTCTACGGGCCCCTGGACAGTAAAAACCCACTCCTGGCCTCTTGCGAGAAGGAGATCCGGGAGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS CCA 72 bp GGGCAGATGCACCGGCGACACCGATGTCTCAGAGTCTaGGGACTCCTCAGAAGAACTGGAGGAGCTTCTGGA +
Preference number: 6 (lower is better)
Translates to: GQMHRRHRCLRV*GLLRRTGGASG
Trigger: TCCAGAAGCTCCTCCAGTTCTTCTGAGGAGTCCCCAGACTCTGAGACATCGGTGTCGCCGGTGCATCTGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS CCA 72 bp TGGACAGGAGCGGGACAGAGGACTCCATGCACATGCTaGCCCACAGCAGGAACTCCAAGGCCTTGGAAGACT +
Preference number: 6 (lower is better)
Translates to: WTGAGQRTPCTC*PTAGTPRPWKT
Trigger: AGTCTTCCAAGGCCTTGGAGTTCCTGCTGTGGGCCAGCATGTGCATGGAGTCCTCTGTCCCGCTCCTGTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS TCA 72 bp CGGCAGTGTAGAGAGTGGCTCTCCATGTCAGGTACCTaGTGGACAGGAGCGGGACAGAGGACTCCATGCACA +
Preference number: 6 (lower is better)
Translates to: RQCREWLSMSGT*WTGAGQRTPCT
Trigger: TGTGCATGGAGTCCTCTGTCCCGCTCCTGTCCATCAGGTACCTGACATGGAGAGCCACTCTCTACACTGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS CAA 90 bp ACGGGAGAGCTCAGGGCCATTCAGCTCTTTTATCCTCTGGACCAGTaGGCGCTGAGCATACACCAACAGCGGGGTCACTTGCTCTGTGTA +
Preference number: 6 (lower is better)
Translates to: TGELRAIQLFYPLDQ*ALSIHQQRGHLLCV
Trigger: TACACAGAGCAAGTGACCCCGCTGTTGGTGTATGCTCAGCGCCAACTGGTCCAGAGGATAAAAGAGCTGAATGGCCCTGAGCTCTCCCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp AGGGTACCGTTGAAGATAATCCAGCAGAGGTGCTCCTaGGGGAGAGCCACCTGCATGATGAGCCGAAAGGAG +
Preference number: 6 (lower is better)
Translates to: RVPLKIIQQRCS*GRATCMMSRKE
Trigger: CTCCTTTCGGCTCATCATGCAGGTGGCTCTCCCTCAGGAGCACCTCTGCTGGATTATCTTCAACGGTACCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS GCA 72 bp GCCACCTGCATGATGAGCCGAAAGGAGGACAAGATGTaGAGGCACTGTCTCACGGATTCCTCATTCTGCAGG +
Preference number: 6 (lower is better)
Translates to: ATCMMSRKEDKM*RHCLTDSSFCR
Trigger: CCTGCAGAATGAGGAATCCGTGAGACAGTGCCTGCACATCTTGTCCTCCTTTCGGCTCATCATGCAGGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS GCA 72 bp GAACTCGGCCAGGACCTCTGTGTCGTCGGCACTCTTTaGCTCTGTGCATACTTCATCGATGAGGCTCAGACA +
Preference number: 6 (lower is better)
Translates to: ELGQDLCVVGTL*LCAYFIDEAQT
Trigger: TGTCTGAGCCTCATCGATGAAGTATGCACAGAGGCAAAGAGTGCCGACGACACAGAGGTCCTGGCCGAGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp CTCAGGGCCATTCAGCTCTTTTATCCTCTGGACCAGTaGGCGCTGAGCATACACCAACAGCGGGGTCACTTG +
Preference number: 6 (lower is better)
Translates to: LRAIQLFYPLDQ*ALSIHQQRGHL
Trigger: CAAGTGACCCCGCTGTTGGTGTATGCTCAGCGCCAACTGGTCCAGAGGATAAAAGAGCTGAATGGCCCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CCA 72 bp GCAGGCACTGTCTCACGGATTCCTCATTCTGCAGGTTaGCATCGCTTTCGCAGACCAGCTGGTAGTTGCAAA +
Preference number: 6 (lower is better)
Translates to: AGTVSRIPHSAG*HRFRRPAGSCK
Trigger: TTTGCAACTACCAGCTGGTCTGCGAAAGCGATGCCAACCTGCAGAATGAGGAATCCGTGAGACAGTGCCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS TCA 72 bp TTCTCTCCATTTTCAGCCTCGTATCTGGCGCAAGCCTaGCGGGAGAGCTCAGGGCCATTCAGCTCTTTTATC +
Preference number: 6 (lower is better)
Translates to: FSPFSASYLAQA*RESSGPFSSFI
Trigger: GATAAAAGAGCTGAATGGCCCTGAGCTCTCCCGTCAGGCTTGCGCCAGATACGAGGCTGAAAATGGAGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 72 bp GTATCTGCAGCTCCCGGGAAAAGTTCCAGAAGACCCTaGAACAATTCTGCAGTAGAGTCCAGTAGCCACCAC +
Preference number: 6 (lower is better)
Translates to: VSAAPGKSSRRP*NNSAVESSSHH
Trigger: GTGGTGGCTACTGGACTCTACTGCAGAATTGTTGCAGGGTCTTCTGGAACTTTTCCCGGGAGCTGCAGATAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CCA 72 bp CTCGAGGCTGAATATAGCAGGCAGGGAGACATCAAATaGAACCTTGGTCATTGGAGGAGGGGGCTCATTGTC +
Preference number: 6 (lower is better)
Translates to: LEAEYSRQGDIK*NLGHWRRGLIV
Trigger: GACAATGAGCCCCCTCCTCCAATGACCAAGGTTCCATTTGATGTCTCCCTGCCTGCTATATTCAGCCTCGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp TGCAGAACGGGCAGCCACTTACTGATGTCCTTCTTCTaGCTGCTGGAACATACCTGCTTGGCCATGGTGTGT +
Preference number: 6 (lower is better)
Translates to: CRTGSHLLMSFF*LLEHTCLAMVC
Trigger: ACACACCATGGCCAAGCAGGTATGTTCCAGCAGCAAGAAGAAGGACATCAGTAAGTGGCTGCCCGTTCTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp TCAGGTTATCACTCAGGCTCCGGTATGCCATTTTCCTaGCGTCCGTTCTCTTGTTTCTGTCCAGCTCTGCCA +
Preference number: 6 (lower is better)
Translates to: SGYHSGSGMPFS*RPFSCFCPALP
Trigger: TGGCAGAGCTGGACAGAAACAAGAGAACGGACGTCAGGAAAATGGCATACCGGAGCCTGAGTGATAACCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp CCAGCATCAAGCGGCACCTCAGCCAAAGGTGAATATTaGAGTATTCCCGGGAGTTCAGGGAAATGGGGTCTA +
Preference number: 6 (lower is better)
Translates to: PASSGTSAKGEY*SIPGSSGKWGL
Trigger: TAGACCCCATTTCCCTGAACTCCCGGGAATACTTCAATATTCACCTTTGGCTGAGGTGCCGCTTGATGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 72 bp CCTTTGGCAGGAGTGTTTGTGCTAACAGTTGGAGCCTaGAAAACTTCCAGTTGGTCAAGGAGCACAACGGCT +
Preference number: 6 (lower is better)
Translates to: PLAGVFVLTVGA*KTSSWSRSTTA
Trigger: AGCCGTTGTGCTCCTTGACCAACTGGAAGTTTTGCAGGCTCCAACTGTTAGCACAAACACTCCTGCCAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 72 bp TCCAGGGGCACAGAGACAAGCTGTTTGGCTAGTCTCTaGTCTGAAGTGATGAGTGTCTTCAGGGGTTCAGAA +
Preference number: 6 (lower is better)
Translates to: SRGTETSCLASL*SEVMSVFRGSE
Trigger: TTCTGAACCCCTGAAGACACTCATCACTTCAGAGCAGAGACTAGCCAAACAGCTTGTCTCTGTGCCCCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp GTTTGTGCTAACAGTTGGAGCCTGCAAAACTTCCAGTaGGTCAAGGAGCACAACGGCTATACGGTGCTGAGC +
Preference number: 6 (lower is better)
Translates to: VCANSWSLQNFQ*VKEHNGYTVLS
Trigger: GCTCAGCACCGTATAGCCGTTGTGCTCCTTGACCAACTGGAAGTTTTGCAGGCTCCAACTGTTAGCACAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CCA 72 bp TTCCCAACCTTTGGCAGGAGTGTTTGTGCTAACAGTTaGAGCCTGCAAAACTTCCAGTTGGTCAAGGAGCAC +
Preference number: 6 (lower is better)
Translates to: FPTFGRSVCANS*SLQNFQLVKEH
Trigger: GTGCTCCTTGACCAACTGGAAGTTTTGCAGGCTCCAACTGTTAGCACAAACACTCCTGCCAAAGGTTGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp CTGGGAATGCTGAACTCGCCTCTCTCCTCGAAGGGCTaGATAGAGTTTGTGCTCTGCAGCTTTATCAACATG +
Preference number: 6 (lower is better)
Translates to: LGMLNSPLSSKG*IEFVLCSFINM
Trigger: CATGTTGATAAAGCTGCAGAGCACAAACTCTATCAAGCCCTTCGAGGAGAGAGGCGAGTTCAGCATTCCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp AGCTCAGCCAGGTTCTTGGGTGTGGAAGAATCAATCTaGAGGCGCTTCCCAATGAAGTTTCGACAGGTGATC +
Preference number: 6 (lower is better)
Translates to: SSARFLGVEESI*RRFPMKFRQVI
Trigger: GATCACCTGTCGAAACTTCATTGGGAAGCGCCTCAAGATTGATTCTTCCACACCCAAGAACCTGGCTGAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp TTGTCGATCATGGCCCTCTTCTTTCCTATCAGGAGGTaGATCCCCAGTACAGATTCACTGACCTGTGCAGCA +
Preference number: 6 (lower is better)
Translates to: LSIMALFFPIRR*IPSTDSLTCAA
Trigger: TGCTGCACAGGTCAGTGAATCTGTACTGGGGATCAACCTCCTGATAGGAAAGAAGAGGGCCATGATCGACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 90 bp AGTGTCTTCAGGGGTTCAGAACTGCCTTGTAGCTCAGCCAGGTTCTaGGGTGTGGAAGAATCAATCTTGAGGCGCTTCCCAATGAAGTTT +
Preference number: 6 (lower is better)
Translates to: SVFRGSELPCSSARF*GVEESILRRFPMKF
Trigger: AAACTTCATTGGGAAGCGCCTCAAGATTGATTCTTCCACACCCAAGAACCTGGCTGAGCTACAAGGCAGTTCTGAACCCCTGAAGACACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 90 bp CATCTCAAAGTGTCATTCACATCCAGGGGCACAGAGACAAGCTGTTaGGCTAGTCTCTGCTCTGAAGTGATGAGTGTCTTCAGGGGTTCA +
Preference number: 6 (lower is better)
Translates to: HLKVSFTSRGTETSC*ASLCSEVMSVFRGS
Trigger: TGAACCCCTGAAGACACTCATCACTTCAGAGCAGAGACTAGCCAAACAGCTTGTCTCTGTGCCCCTGGATGTGAATGACACTTTGAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp ACAGCAGGAACTCCAAGGCCTTGGAAGACTGTCCTATaGCCATCAGCTTCCGGCAAATGGTGTAGATGTAAA +
Preference number: 6 (lower is better)
Translates to: TAGTPRPWKTVL*PSASGKWCRCK
Trigger: TTTACATCTACACCATTTGCCGGAAGCTGATGGTCATAGGACAGTCTTCCAAGGCCTTGGAGTTCCTGCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS TCA 72 bp AGTTTGGTAGTAGGAAGAAATGACCAGCCCCAGCTGTaGGGAGGGAAGTTTGCTTTTCTCCACGGAGCTAAA +
Preference number: 6 (lower is better)
Translates to: SLVVGRNDQPQL*GGKFAFLHGAK
Trigger: TTTAGCTCCGTGGAGAAAAGCAAACTTCCCTCCTCACAGCTGGGGCTGGTCATTTCTTCCTACTACCAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067705.8
ENSMUST00000164979.2
ENSMUST00000212902.2
CDS TCA 72 bp TTCTGTGGTAGAAGTTTCTGGAGAGGTGGGGCTGCATaGCTCTTCGGGCACTTTCTTTTTGAACACCTTCGA +
Preference number: 6 (lower is better)
Translates to: FCGRSFWRGGAA*LFGHFLFEHLR
Trigger: TCGAAGGTGTTCAAAAAGAAAGTGCCCGAAGAGTCATGCAGCCCCACCTCTCCAGAAACTTCTACCACAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp GAAGTTACCAGCATCAAGCGGCACCTCAGCCAAAGGTaGATATTGAAGTATTCCCGGGAGTTCAGGGAAATG +
Preference number: 6 (lower is better)
Translates to: EVTSIKRHLSQR*ILKYSREFREM
Trigger: CATTTCCCTGAACTCCCGGGAATACTTCAATATTCACCTTTGGCTGAGGTGCCGCTTGATGCTGGTAACTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp AGCTTTTGTATGATGTCTGCCTTAAAGTGCTTCTCCTaGAGGCCCAGGACCACAGCTTGCATTAGGAACTCG +
Preference number: 6 (lower is better)
Translates to: SFCMMSALKCFS*RPRTTACIRNS
Trigger: CGAGTTCCTAATGCAAGCTGTGGTCCTGGGCCTTCAGGAGAAGCACTTTAAGGCAGACATCATACAAAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp GCTGTGCCTTCTGGGAAGAGGCTTGAGTGTTGTGGCTaGAGCCTTCCTCTTTGGCTTCTTCAGATAGAAATA +
Preference number: 6 (lower is better)
Translates to: AVPSGKRLECCG*SLPLWLLQIEI
Trigger: TATTTCTATCTGAAGAAGCCAAAGAGGAAGGCTTCAGCCACAACACTCAAGCCTCTTCCCAGAAGGCACAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp TTGCCAGATAAGTCAGACTGCAGGGAGCTGTCCCGATaGACCTTGCCTGATGATTCGAACAGAACTTTCTCT +
Preference number: 6 (lower is better)
Translates to: LPDKSDCRELSR*TLPDDSNRTFS
Trigger: AGAGAAAGTTCTGTTCGAATCATCAGGCAAGGTTCATCGGGACAGCTCCCTGCAGTCTGACTTATCTGGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CCA 72 bp GTCCAGATATTAAACAGCGTGGTGGCACACCTCCGATaGAATTCGTACTTCTGTTCCATTGAGGTGGCTAGA +
Preference number: 6 (lower is better)
Translates to: VQILNSVVAHLR*NSYFCSIEVAR
Trigger: TCTAGCCACCTCAATGGAACAGAAGTACGAATTCCATCGGAGGTGTGCCACCACGCTGTTTAATATCTGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS CCA 72 bp TGTCTCCAACCTTCAGGAGCTTCTCGTTGTAATAGTTaGACGGCAGCCTGGGAGCATATTTGGTCCAGATAT +
Preference number: 6 (lower is better)
Translates to: CLQPSGASRCNS*TAAWEHIWSRY
Trigger: ATATCTGGACCAAATATGCTCCCAGGCTGCCGTCCAACTATTACAACGAGAAGCTCCTGAAGGTTGGAGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS CCA 72 bp CCTTCTTCTTGCTGCTGGAACATACCTGCTTGGCCATaGTGTGTCCAATCCTCAGTTTTACTTTGGCCAGTA +
Preference number: 6 (lower is better)
Translates to: PSSCCWNIPAWP*CVQSSVLLWPV
Trigger: TACTGGCCAAAGTAAAACTGAGGATTGGACACACCATGGCCAAGCAGGTATGTTCCAGCAGCAAGAAGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp CTGAATATAGCAGGCAGGGAGACATCAAATGGAACCTaGGTCATTGGAGGAGGGGGCTCATTGTCTTTGTCT +
Preference number: 6 (lower is better)
Translates to: LNIAGRETSNGT*VIGGGGSLSLS
Trigger: AGACAAAGACAATGAGCCCCCTCCTCCAATGACCAAGGTTCCATTTGATGTCTCCCTGCCTGCTATATTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 90 bp TTATTGACTTTGTCGATCATGGCCCTCTTCTTTCCTATCAGGAGGTaGATCCCCAGTACAGATTCACTGACCTGTGCAGCAGCTCGTATT +
Preference number: 6 (lower is better)
Translates to: LLTLSIMALFFPIRR*IPSTDSLTCAAARI
Trigger: AATACGAGCTGCTGCACAGGTCAGTGAATCTGTACTGGGGATCAACCTCCTGATAGGAAAGAAGAGGGCCATGATCGACAAAGTCAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp ATTGCGATCCAGGCCAGTGAGCTATACATCTCAGTTTaGGTTGCTACTGGGTCTTTAACAGAGCTGTGCCTT +
Preference number: 6 (lower is better)
Translates to: IAIQASELYISV*VATGSLTELCL
Trigger: AAGGCACAGCTCTGTTAAAGACCCAGTAGCAACTCAAACTGAGATGTATAGCTCACTGGCCTGGATCGCAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 72 bp ACCCTGGGTAGGGACACAGACACAGAAATGAAGAATTaGTGCCAAGCTAAAAGTGTCTTCCGTGAATGTGGT +
Preference number: 6 (lower is better)
Translates to: TLGRDTDTEMKN*CQAKSVFRECG
Trigger: ACCACATTCACGGAAGACACTTTTAGCTTGGCAGCAATTCTTCATTTCTGTGTCTGTGTCCCTACCCAGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS GCA 72 bp TTGGCTCCAGCATTTAAAAGCAGCCCTTTTCTTATCTaGAAAGAGGAGGAGGCTTCCAAGAGAATGCAGGGA +
Preference number: 6 (lower is better)
Translates to: LAPAFKSSPFLI*KEEEASKRMQG
Trigger: TCCCTGCATTCTCTTGGAAGCCTCCTCCTCTTTGCAGATAAGAAAAGGGCTGCTTTTAAATGCTGGAGCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000067705.8
ENSMUST00000164979.2
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CCA 72 bp TTCGTACTGAGCATAGTTACGTTCGGCTTTGGGATGTaGGAGTGTAGTACGGAGCAGACTCTGAAAAAGCAA +
Preference number: 6 (lower is better)
Translates to: FVLSIVTFGFGM*ECSTEQTLKKQ
Trigger: TTGCTTTTTCAGAGTCTGCTCCGTACTACACTCCCACATCCCAAAGCCGAACGTAACTATGCTCAGTACGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000067705.8
ENSMUST00000164979.2
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp CTCAGTGGAATCCAGGAGGTGCCAACGTACAGGCTGTaGCCAGTAGAAACTTTGATATCTAAAATCCTCAGG +
Preference number: 6 (lower is better)
Translates to: LSGIQEVPTYRL*PVETLISKILR
Trigger: CCTGAGGATTTTAGATATCAAAGTTTCTACTGGCAACAGCCTGTACGTTGGCACCTCCTGGATTCCACTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000163209.3
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp CTGATGTCCTTCTTCTTGCTGCTGGAACATACCTGCTaGGCCATGGTGTGTCCAATCCTCAGTTTTACTTTG +
Preference number: 6 (lower is better)
Translates to: LMSFFLLLEHTC*AMVCPILSFTL
Trigger: CAAAGTAAAACTGAGGATTGGACACACCATGGCCAAGCAGGTATGTTCCAGCAGCAAGAAGAAGGACATCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 90 bp ATACCGCCCATAGCACTGCAGAAGAGCCAGCTTGTATTCTTTTATTaGACAGAGGCTGTCTCCAACCTTCAGGAGCTTCTCGTTGTAATA +
Preference number: 6 (lower is better)
Translates to: IPPIALQKSQLVFFY*TEAVSNLQELLVVI
Trigger: TATTACAACGAGAAGCTCCTGAAGGTTGGAGACAGCCTCTGTCAAATAAAAGAATACAAGCTGGCTCTTCTGCAGTGCTATGGGCGGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 90 bp GTTGCCTTGGTCATTGGAGGAGGGGGCTCATTGTCTTTGTCTTTGTaGTTGGAAAACAGAGCTTCTATTTCAGAGCAACATTCGAGGATC +
Preference number: 6 (lower is better)
Translates to: VALVIGGGGSLSLSL*LENRASISEQHSRI
Trigger: GATCCTCGAATGTTGCTCTGAAATAGAAGCTCTGTTTTCCAACAACAAAGACAAAGACAATGAGCCCCCTCCTCCAATGACCAAGGCAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
CDS CAA 90 bp GTTGTTGCCTTGGTCATTGGAGGAGGGGGCTCATTGTCTTTGTCTTaGTTGTTGGAAAACAGAGCTTCTATTTCAGAGCAACATTCGAGG +
Preference number: 6 (lower is better)
Translates to: VVALVIGGGGSLSLS*LLENRASISEQHSR
Trigger: CCTCGAATGTTGCTCTGAAATAGAAGCTCTGTTTTCCAACAACAAAGACAAAGACAATGAGCCCCCTCCTCCAATGACCAAGGCAACAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163209.3
CDS CAA 90 bp GGAACCTTGGTCATTGGAGGAGGGGGCTCATTGTCTTTGTCTTTGTaGTTGGAAAACAGAGCTTCTATTTCAGAGCAACATTCGAGGATC +
Preference number: 6 (lower is better)
Translates to: GTLVIGGGGSLSLSL*LENRASISEQHSRI
Trigger: GATCCTCGAATGTTGCTCTGAAATAGAAGCTCTGTTTTCCAACAACAAAGACAAAGACAATGAGCCCCCTCCTCCAATGACCAAGGTTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp ATCTCGGCTATTTGTGCAAGATTAGATAGTTTCTGGTaGACTGCAATGACGCTCCTCAGTGGAATCCAGGAG +
Preference number: 6 (lower is better)
Translates to: ISAICARLDSFW*TAMTLLSGIQE
Trigger: CTCCTGGATTCCACTGAGGAGCGTCATTGCAGTTCACCAGAAACTATCTAATCTTGCACAAATAGCCGAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000163209.3
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 72 bp ATAAACTGCGCTATCTTCGCTGTGATCATCGCCGCTTaGAAACACCCCCAGATGCCAAATTTCGATAGAAAT +
Preference number: 6 (lower is better)
Translates to: INCAIFAVIIAA*KHPQMPNFDRN
Trigger: ATTTCTATCGAAATTTGGCATCTGGGGGTGTTTGCAAGCGGCGATGATCACAGCGAAGATAGCGCAGTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000067705.8
ENSMUST00000164979.2
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 72 bp CCTCTCTCCTCGAAGGGCTTGATAGAGTTTGTGCTCTaGAGCTTTATCAACATGTCAATAAGTAGTTCTGCG +
Preference number: 6 (lower is better)
Translates to: PLSSKGLIEFVL*SFINMSISSSA
Trigger: CGCAGAACTACTTATTGACATGTTGATAAAGCTGCAGAGCACAAACTCTATCAAGCCCTTCGAGGAGAGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 72 bp AATCTCAGCCTCCACTTCATATTCCTCTGCTGCGGTTaGTTTACAGACCTTCAAAGCCATGTCAAACATGTG +
Preference number: 6 (lower is better)
Translates to: NLSLHFIFLCCG*FTDLQSHVKHV
Trigger: CACATGTTTGACATGGCTTTGAAGGTCTGTAAAGCAACCGCAGCAGAGGAATATGAAGTGGAGGCTGAGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CCA 72 bp ATGGCAAGAGACACCAGAGTTTCCCACTTCTCCACTTaGTATAGAACCTCCAGAGACTTCAACACAAAGTCA +
Preference number: 6 (lower is better)
Translates to: MARDTRVSHFST*YRTSRDFNTKS
Trigger: TGACTTTGTGTTGAAGTCTCTGGAGGTTCTATACCAAGTGGAGAAGTGGGAAACTCTGGTGTCTCTTGCCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CCA 72 bp TCTTCGGGCACTTTCTTTTTGAACACCTTCGAATCCTaGAGAAGCTTCAGTGTAGAGTATAGGATGGCAGTG +
Preference number: 6 (lower is better)
Translates to: SSGTFFLNTFES*RSFSVEYRMAV
Trigger: CACTGCCATCCTATACTCTACACTGAAGCTTCTCCAGGATTCGAAGGTGTTCAAAAAGAAAGTGCCCGAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp ATAGCACTGCAGAAGAGCCAGCTTGTATTCTTTTATTaGACAGAGGCTGTCTCCAACCTTCAGGAGCTTCTC +
Preference number: 6 (lower is better)
Translates to: IALQKSQLVFFY*TEAVSNLQELL
Trigger: GAGAAGCTCCTGAAGGTTGGAGACAGCCTCTGTCAAATAAAAGAATACAAGCTGGCTCTTCTGCAGTGCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp GAATCTCAGCCTCCACTTCATATTCCTCTGCTGCGGTaGCTTTACAGACCTTCAAAGCCATGTCAAACATGT +
Preference number: 6 (lower is better)
Translates to: ESQPPLHIPLLR*LYRPSKPCQTC
Trigger: ACATGTTTGACATGGCTTTGAAGGTCTGTAAAGCAACCGCAGCAGAGGAATATGAAGTGGAGGCTGAGATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp AGGCAAAACTCCACCTTCCCTGGAGTAAATTTTGAGTaGTCCATCCCTCCTCTTTCATCTTGTGTCTGTGCA +
Preference number: 6 (lower is better)
Translates to: RQNSTFPGVNFE*SIPPLSSCVCA
Trigger: TGCACAGACACAAGATGAAAGAGGAGGGATGGACAACTCAAAATTTACTCCAGGGAAGGTGGAGTTTTGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212902.2
CDS CAA 90 bp GGAATCCAGGAGGTGCCAACGTACAGGCTGTTGCCAGTAGAAACTTaGATATCTAAAATCCTCAGGGGCTTCAGGTTATATGCATACAAT +
Preference number: 6 (lower is better)
Translates to: GIQEVPTYRLLPVET*ISKILRGFRLYAYN
Trigger: ATTGTATGCATATAACCTGAAGCCCCTGAGGATTTTAGATATCAAAGTTTCTACTGGCAACAGCCTGTACGTTGGCACCTCCTGGATTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000163209.3
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 90 bp AGAGACTTCAACACAAAGTCATGGATCCATCTCAAATCTACCACGTaGACGTCATCCAAAGGATGTTCAAAGATCAGGCTGGAACCTCCA +
Preference number: 6 (lower is better)
Translates to: RDFNTKSWIHLKSTT*TSSKGCSKIRLEPP
Trigger: TGGAGGTTCCAGCCTGATCTTTGAACATCCTTTGGATGACGTCAACGTGGTAGATTTGAGATGGATCCATGACTTTGTGTTGAAGTCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 90 bp AATGGAACCTTGGTCATTGGAGGAGGGGGCTCATTGTCTTTGTCTTaGTTGTTGGAAAACAGAGCTTCTATTTCAGAGCAACATTCGAGG +
Preference number: 6 (lower is better)
Translates to: NGTLVIGGGGSLSLS*LLENRASISEQHSR
Trigger: CCTCGAATGTTGCTCTGAAATAGAAGCTCTGTTTTCCAACAACAAAGACAAAGACAATGAGCCCCCTCCTCCAATGACCAAGGTTCCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 90 bp AGGGAGACATCAAATGGAACCTTGGTCATTGGAGGAGGGGGCTCATaGTCTTTGTCTTTGTTGTTGGAAAACAGAGCTTCTATTTCAGAG +
Preference number: 6 (lower is better)
Translates to: RETSNGTLVIGGGGS*SLSLLLENRASISE
Trigger: CTCTGAAATAGAAGCTCTGTTTTCCAACAACAAAGACAAAGACAATGAGCCCCCTCCTCCAATGACCAAGGTTCCATTTGATGTCTCCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp TTCCCAAAGACTCTAGTATTTCACTTAATCGTAACGTaGTCTCCGCCACCATCACAATGTCCAGGTCTTCCA +
Preference number: 6 (lower is better)
Translates to: FPKTLVFHLIVT*SPPPSQCPGLP
Trigger: TGGAAGACCTGGACATTGTGATGGTGGCGGAGATCACGTTACGATTAAGTGAAATACTAGAGTCTTTGGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000170065.8
ENSMUST00000212902.2
CDS TCA 72 bp ACACAAAGTCATGGATCCATCTCAAATCTACCACGTTaGCGTCATCCAAAGGATGTTCAAAGATCAGGCTGG +
Preference number: 6 (lower is better)
Translates to: TQSHGSISNLPR*RHPKDVQRSGW
Trigger: CCAGCCTGATCTTTGAACATCCTTTGGATGACGTCAACGTGGTAGATTTGAGATGGATCCATGACTTTGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp CAGGGCGATTTCGAGGTAGGAATCCCTTATCAACCCTaGGTTCTGATCGTTTTTCAGGCTTATTTGAATAGC +
Preference number: 6 (lower is better)
Translates to: QGDFEVGIPYQP*VLIVFQAYLNS
Trigger: GCTATTCAAATAAGCCTGAAAAACGATCAGAACTCAGGGTTGATAAGGGATTCCTACCTCGAAATCGCCCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp TTTGGCGCAAAATCAATTCAGAGTTGTACAGGGACGTaGGAAGTGTGTCATCAGGCAAAGAAATCCCTGAGA +
Preference number: 6 (lower is better)
Translates to: FGAKSIQSCTGT*EVCHQAKKSLR
Trigger: TCTCAGGGATTTCTTTGCCTGATGACACACTTCTCACGTCCCTGTACAACTCTGAATTGATTTTGCGCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 72 bp CTTCTTTTTCTTAGAGACAGTGAGGGCATCCATCATTaGATTGTAGCTGTCTACAGTCAGCTTTGCTGTTGG +
Preference number: 6 (lower is better)
Translates to: LLFLRDSEGIHH*IVAVYSQLCCW
Trigger: CCAACAGCAAAGCTGACTGTAGACAGCTACAATGCAATGATGGATGCCCTCACTGTCTCTAAGAAAAAGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp CATCCATCATTGCATTGTAGCTGTCTACAGTCAGCTTaGCTGTTGGTAACACTGTTCCAGAGTGGAACAATG +
Preference number: 6 (lower is better)
Translates to: HPSLHCSCLQSA*LLVTLFQSGTM
Trigger: CATTGTTCCACTCTGGAACAGTGTTACCAACAGCAAAGCTGACTGTAGACAGCTACAATGCAATGATGGATG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp ATGCAGAGAAAGTTATCCTGGCTAACAGGAAAGGTTTaGCAACTAGCCACAGTCTGCTTCAGTAGTATCTGC +
Preference number: 6 (lower is better)
Translates to: MQRKLSWLTGKV*QLATVCFSSIC
Trigger: GCAGATACTACTGAAGCAGACTGTGGCTAGTTGCAAAACCTTTCCTGTTAGCCAGGATAACTTTCTCTGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 90 bp AAGAGAATGCAGGGACTGAACTTTAAGGCTCCTTTGATTGCTGGTTaGGAGAACATCAATAGTTTGGTAGTAGGAAGAAATGACCAGCCC +
Preference number: 6 (lower is better)
Translates to: KRMQGLNFKAPLIAG*ENINSLVVGRNDQP
Trigger: GGGCTGGTCATTTCTTCCTACTACCAAACTATTGATGTTCTCCAAACCAGCAATCAAAGGAGCCTTAAAGTTCAGTCCCTGCATTCTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067705.8
ENSMUST00000164979.2
ENSMUST00000212902.2
CDS TCA 72 bp GCTTTGGGATGTGGGAGTGTAGTACGGAGCAGACTCTaGAAAAGCAATGCAGACAATATACAACAGTTGATT +
Preference number: 6 (lower is better)
Translates to: ALGCGSVVRSRL*KSNADNIQQLI
Trigger: AATCAACTGTTGTATATTGTCTGCATTGCTTTTTCAGAGTCTGCTCCGTACTACACTCCCACATCCCAAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067705.8
ENSMUST00000164979.2
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp ATCTGTTATGATATTTGGACTTTTCCAGGGTCTCTCTaGAGCATCTCAAAGTGTCATTCACATCCAGGGGCA +
Preference number: 6 (lower is better)
Translates to: ICYDIWTFPGSL*SISKCHSHPGA
Trigger: TGCCCCTGGATGTGAATGACACTTTGAGATGCTTCAGAGAGACCCTGGAAAAGTCCAAATATCATAACAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 72 bp CAAACTGATAATTTCCTTAAGCTTTTGTATGATGTCTaGCTTAAAGTGCTTCTCCTGAAGGCCCAGGACCAC +
Preference number: 6 (lower is better)
Translates to: QTDNFLKLLYDV*LKVLLLKAQDH
Trigger: GTGGTCCTGGGCCTTCAGGAGAAGCACTTTAAGGCAGACATCATACAAAAGCTTAAGGAAATTATCAGTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp AACACAAAGTCATGGATCCATCTCAAATCTACCACGTaGACGTCATCCAAAGGATGTTCAAAGATCAGGCTG +
Preference number: 6 (lower is better)
Translates to: NTKSWIHLKSTT*TSSKGCSKIRL
Trigger: CAGCCTGATCTTTGAACATCCTTTGGATGACGTCAACGTGGTAGATTTGAGATGGATCCATGACTTTGTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp AACTCTGGGATGTTTGGCAATGTAATGTTATTGACTTaGTCGATCATGGCCCTCTTCTTTCCTATCAGGAGG +
Preference number: 6 (lower is better)
Translates to: NSGMFGNVMLLT*SIMALFFPIRR
Trigger: CCTCCTGATAGGAAAGAAGAGGGCCATGATCGACAAAGTCAATAACATTACATTGCCAAACATCCCAGAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp GAGTTAATAGCAACTGAGAGGGTAAGTGCTTTAATATaGGAAGGATTTCTGGGACCCCTTTTGAAGTCCCAG +
Preference number: 6 (lower is better)
Translates to: ELIATERVSALI*EGFLGPLLKSQ
Trigger: CTGGGACTTCAAAAGGGGTCCCAGAAATCCTTCCAATATTAAAGCACTTACCCTCTCAGTTGCTATTAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220280.2
CDS GCA 72 bp GTCTTGGCAAATGACAGACACAAAATATTGGTACAGTaGAAGAAGAGGCAGAACTATGAGGTTGTACTTAGC +
Preference number: 6 (lower is better)
Translates to: VLANDRHKILVQ*KKRQNYEVVLS
Trigger: GCTAAGTACAACCTCATAGTTCTGCCTCTTCTTGCACTGTACCAATATTTTGTGTCTGTCATTTGCCAAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067705.8
ENSMUST00000164979.2
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp AGATGCATTTCTTTTTGGCGCAAAATCAATTCAGAGTaGTACAGGGACGTGAGAAGTGTGTCATCAGGCAAA +
Preference number: 6 (lower is better)
Translates to: RCISFWRKINSE*YRDVRSVSSGK
Trigger: TTTGCCTGATGACACACTTCTCACGTCCCTGTACAACTCTGAATTGATTTTGCGCCAAAAAGAAATGCATCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp CCAAAAGAGATGGCAGTGAGGAGAGTTAATAGCAACTaGGAGGGTAAGTGCTTTAATATTGGAAGGATTTCT +
Preference number: 6 (lower is better)
Translates to: PKEMAVRRVNSN*EGKCFNIGRIS
Trigger: AGAAATCCTTCCAATATTAAAGCACTTACCCTCTCAGTTGCTATTAACTCTCCTCACTGCCATCTCTTTTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220280.2
CDS TCA 72 bp TATAAGATTCTTCAGAGATTCCAAAAGAGATGGCAGTaGGGAGAGTTAATAGCAACTGAGAGGGTAAGTGCT +
Preference number: 6 (lower is better)
Translates to: YKILQRFQKRWQ*GELIATERVSA
Trigger: AGCACTTACCCTCTCAGTTGCTATTAACTCTCCTCACTGCCATCTCTTTTGGAATCTCTGAAGAATCTTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220280.2
CDS GCA 72 bp TTTCCTGACGTCCGTTCTCTTGTTTCTGTCCAGCTCTaGCATATCAAAAATGGATGGATTCTTGTAGAAAAA +
Preference number: 6 (lower is better)
Translates to: FPDVRSLVSVQL*HIKNGWILVEK
Trigger: TTTTTCTACAAGAATCCATCCATTTTTGATATGGCAGAGCTGGACAGAAACAAGAGAACGGACGTCAGGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 72 bp AGTACAGATAAATCTTCTGTATCTGTGGTTTGGTTGTaGTTCTTTTTCTTAGAGACAGTGAGGGCATCCATC +
Preference number: 6 (lower is better)
Translates to: STDKSSVSVVWL*FFFLETVRASI
Trigger: GATGGATGCCCTCACTGTCTCTAAGAAAAAGAAGCACAACCAAACCACAGATACAGAAGATTTATCTGTACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CCA 72 bp TCTCAAACAGTAAAAGAGCCTTCTGCATCAGGTAGATaGCTTTGGACAGCTTGTTCTTCTTTATCTTCTTCA +
Preference number: 6 (lower is better)
Translates to: SQTVKEPSASGR*LWTACSSLSSS
Trigger: TGAAGAAGATAAAGAAGAACAAGCTGTCCAAAGCCATCTACCTGATGCAGAAGGCTCTTTTACTGTTTGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp GAATCAATTCAAGATGTAGGTCCATTGTGTAGCTGTTaGATGCAATCGGTTTGTAAGTGTCTCCATCTACGT +
Preference number: 6 (lower is better)
Translates to: ESIQDVGPLCSC*MQSVCKCLHLR
Trigger: ACGTAGATGGAGACACTTACAAACCGATTGCATCAAACAGCTACACAATGGACCTACATCTTGAATTGATTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000170065.8
ENSMUST00000212902.2
ENSMUST00000220280.2
CDS CAA 72 bp CAGGGACTGAACTTTAAGGCTCCTTTGATTGCTGGTTaGGAGAACATCAATAGTTTGGTAGTAGGAAGAAAT +
Preference number: 6 (lower is better)
Translates to: QGLNFKAPLIAG*ENINSLVVGRN
Trigger: ATTTCTTCCTACTACCAAACTATTGATGTTCTCCAAACCAGCAATCAAAGGAGCCTTAAAGTTCAGTCCCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067705.8
ENSMUST00000164979.2
ENSMUST00000212902.2
CDS CAA 90 bp AGAGTTTTCTTTTTCTTCCTTCGTCTTCTTGTTAAGTCTGAACTCTaGCCAATCTCGATCACTATGGCTTTAAACTTACTGGGAGACTTG +
Preference number: 6 (lower is better)
Translates to: RVFFFFLRLLVKSEL*PISITMALNLLGDL
Trigger: CAAGTCTCCCAGTAAGTTTAAAGCCATAGTGATCGAGATTGGCAAGAGTTCAGACTTAACAAGAAGACGAAGGAAGAAAAAGAAAACTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS GCA 72 bp TGGGAGTGTAGTACGGAGCAGACTCTGAAAAAGCAATaGAGACAATATACAACAGTTGATTCTTTTCTTAAC +
Preference number: 6 (lower is better)
Translates to: WECSTEQTLKKQ*RQYTTVDSFLN
Trigger: GTTAAGAAAAGAATCAACTGTTGTATATTGTCTGCATTGCTTTTTCAGAGTCTGCTCCGTACTACACTCCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000067705.8
ENSMUST00000164979.2
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp AAAAGTACAGATAAATCTTCTGTATCTGTGGTTTGGTaGTGCTTCTTTTTCTTAGAGACAGTGAGGGCATCC +
Preference number: 6 (lower is better)
Translates to: KSTDKSSVSVVW*CFFFLETVRAS
Trigger: GGATGCCCTCACTGTCTCTAAGAAAAAGAAGCACAACCAAACCACAGATACAGAAGATTTATCTGTACTTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp CTAGTGAAATGTTTTCCAAACCTTGAAGAAGTTCCCTaGGAAATCCATCAATGCATGAAGAAGAGTAGAGCT +
Preference number: 6 (lower is better)
Translates to: LVKCFPNLEEVP*EIHQCMKKSRA
Trigger: AGCTCTACTCTTCTTCATGCATTGATGGATTTCCAAGGGAACTTCTTCAAGGTTTGGAAAACATTTCACTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 90 bp TTATCGGTTTCCAAAGGAAAGATCAAACCTCTGTTTCTCTTCACATaGATCAATGGTTCGACTGCAAGCAGAAGAATTAAATCCTTCTCT +
Preference number: 6 (lower is better)
Translates to: LSVSKGKIKPLFLFT*INGSTASRRIKSFS
Trigger: AGAGAAGGATTTAATTCTTCTGCTTGCAGTCGAACCATTGATCAATGTGAAGAGAAACAGAGGTTTGATCTTTCCTTTGGAAACCGATAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS CAA 90 bp TTGGAATTGAAAAGTACAGATAAATCTTCTGTATCTGTGGTTTGGTaGTGCTTCTTTTTCTTAGAGACAGTGAGGGCATCCATCATTGCA +
Preference number: 6 (lower is better)
Translates to: LELKSTDKSSVSVVW*CFFFLETVRASIIA
Trigger: TGCAATGATGGATGCCCTCACTGTCTCTAAGAAAAAGAAGCACAACCAAACCACAGATACAGAAGATTTATCTGTACTTTTCAATTCCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp CCAAAGGAAAGATCAAACCTCTGTTTCTCTTCACATTaGTCAATGGTTCGACTGCAAGCAGAAGAATTAAAT +
Preference number: 6 (lower is better)
Translates to: PKERSNLCFSSH*SMVRLQAEELN
Trigger: ATTTAATTCTTCTGCTTGCAGTCGAACCATTGATCAATGTGAAGAGAAACAGAGGTTTGATCTTTCCTTTGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS GCA 72 bp AACCCATTTGTTAGTGCTGATCTTGTGAGAATATTTTaGGAAGTCGTTTTTGGGTATGTTGAGCCTTTGAAT +
Preference number: 6 (lower is better)
Translates to: NPFVSADLVRIF*EVVFGYVEPLN
Trigger: ATTCAAAGGCTCAACATACCCAAAAACGACTTCGCAAAATATTCTCACAAGATCAGCACTAACAAATGGGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS CAA 72 bp TCCAAAGGAAAGATCAAACCTCTGTTTCTCTTCACATaGATCAATGGTTCGACTGCAAGCAGAAGAATTAAA +
Preference number: 6 (lower is better)
Translates to: SKGKIKPLFLFT*INGSTASRRIK
Trigger: TTTAATTCTTCTGCTTGCAGTCGAACCATTGATCAATGTGAAGAGAAACAGAGGTTTGATCTTTCCTTTGGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020200.14
ENSMUST00000168110.8
ENSMUST00000168617.3
ENSMUST00000212902.2
CDS TCA 72 bp AACAGAACTTTCTCTAGTGAAATGTTTTCCAAACCTTaGAGAAGTTCCCTTGGAAATCCATCAATGCATGAA +
Preference number: 6 (lower is better)
Translates to: NRTFSSEMFSKP*RSSLGNPSMHE
Trigger: TTCATGCATTGATGGATTTCCAAGGGAACTTCTTCAAGGTTTGGAAAACATTTCACTAGAGAAAGTTCTGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2
CDS TCA 72 bp GTTGTCTTTATGGGTGAGAGGTTTTCCAGAATCGAATaGTTGAGTTATCTTAACTTTCATTGTTGCTTTGTA +
Preference number: 6 (lower is better)
Translates to: VVFMGERFSRIE*LSYLNFHCCFV
Trigger: TACAAAGCAACAATGAAAGTTAAGATAACTCAATCATTCGATTCTGGAAAACCTCTCACCCATAAAGACAAC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168110.8
ENSMUST00000212902.2