Pregenerated sensors for CFAP53 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035394Ensembl transcript IDs: ENSMUST00000114895.4, ENSMUST00000176435.8, ENSMUST00000177101.8
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCAAAGGCCCCGCAAGCTGCGACCCCTGGAAGACGTTCCAAGGGTaGCCCTTCTGGTCGTCTGCTCTTCACTTCTGGGTTCTGCAGGTG | + |
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Preference number: 1 (lower is better) Translates to: SKGPASCDPWKTFQG*PFWSSALHFWVLQV Trigger: CACCTGCAGAACCCAGAAGTGAAGAGCAGACGACCAGAAGGGTCACCCTTGGAACGTCTTCCAGGGGTCGCAGCTTGCGGGGCCTTTGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177101.8 |
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| 3UTR TCA 90 bp | CCCACTTCTGGTATTCTGTATTCTGGCAGCTGCCACTGTGGACCATaGGGACCCAGTGGTTGCAGGAGGAAGACATCCAAAGGCCCCGCA | + |
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Preference number: 1 (lower is better) Translates to: PTSGILYSGSCHCGP*GPSGCRRKTSKGPA Trigger: TGCGGGGCCTTTGGATGTCTTCCTCCTGCAACCACTGGGTCCTCATGGTCCACAGTGGCAGCTGCCAGAATACAGAATACCAGAAGTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177101.8 |
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| 3UTR CCA 90 bp | AGCTCTCTGAGCTTTGGGAGGCTTGGCTCTCTGGGTTCCCACTTCTaGTATTCTGTATTCTGGCAGCTGCCACTGTGGACCATGAGGACC | + |
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Preference number: 1 (lower is better) Translates to: SSLSFGRLGSLGSHF*YSVFWQLPLWTMRT Trigger: GGTCCTCATGGTCCACAGTGGCAGCTGCCAGAATACAGAATACCAGAAGTGGGAACCCAGAGAGCCAAGCCTCCCAAAGCTCAGAGAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177101.8 |
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| 3UTR CCA 90 bp | TTGAATTCTATCTGCGCATTCCGTTCCTCAACCACCTTTTTCTCGTaGATGCTGGCCAATTTAGTGCGGAGCTCCTCACAGCGTTCCCTG | + |
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Preference number: 1 (lower is better) Translates to: LNSICAFRSSTTFFS*MLANLVRSSSQRSL Trigger: CAGGGAACGCTGTGAGGAGCTCCGCACTAAATTGGCCAGCATCCACGAGAAAAAGGTGGTTGAGGAACGGAATGCGCAGATAGAATTCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR CCA 90 bp | GCATCTGAAGTTGATTCCTATACTCCTCAGCCAAAGCACAGCGCCTaGCAAAGTCCTCCATGTCTTCCTGGTGAAGCACCTTCAGGCTTT | + |
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Preference number: 1 (lower is better) Translates to: ASEVDSYTPQPKHSA*QSPPCLPGEAPSGF Trigger: AAAGCCTGAAGGTGCTTCACCAGGAAGACATGGAGGACTTTGCCAGGCGCTGTGCTTTGGCTGAGGAGTATAGGAATCAACTTCAGATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR TCA 90 bp | GTCTTCTCTTCTGCTTCTGGAGTTTTTCTTGTTCGTCCTCTCGTTTaGTCTGTGCTTTGTTCTGCTCCAGGATGCGGGCCTCCTCTTCCT | + |
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Preference number: 1 (lower is better) Translates to: VFSSASGVFLVRPLV*SVLCSAPGCGPPLP Trigger: AGGAAGAGGAGGCCCGCATCCTGGAGCAGAACAAAGCACAGATCAAACGAGAGGACGAACAAGAAAAACTCCAGAAGCAGAAGAGAAGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR GCA 90 bp | ATTCATGACTTCATTCATGAGCTGCTTCCTTGCCGCCCTTTGGAGTaGCAGCTCCCGATCCTTCTCAGCCAACTTCTTTGCCTTTATGTC | + |
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Preference number: 1 (lower is better) Translates to: IHDFIHELLPCRPLE*QLPILLSQLLCLYV Trigger: GACATAAAGGCAAAGAAGTTGGCTGAGAAGGATCGGGAGCTGGCACTCCAAAGGGCGGCAAGGAAGCAGCTCATGAATGAAGTCATGAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR GCA 90 bp | GATCCTCTGTATTTTGTCCAGGCAGGCTTTGTTTGCTGCCAACCCTaGTTCAAATTCCTGGCGTTCCTCTTCCTTTTCTGCTTCTCGAGC | + |
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Preference number: 1 (lower is better) Translates to: DPLYFVQAGFVCCQP*FKFLAFLFLFCFSS Trigger: GCTCGAGAAGCAGAAAAGGAAGAGGAACGCCAGGAATTTGAAGCAGGGTTGGCAGCAAACAAAGCCTGCCTGGACAAAATACAGAGGATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR CCA 90 bp | ATGGCATCCTGGACTCTCGCTTGCACAAGACTGTCAAAGGTCTTGTaGTTATTGCGCTGGATCCAGTCACATTTCAGGCGATTCTCCTCA | + |
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Preference number: 1 (lower is better) Translates to: MASWTLACTRLSKVL*LLRWIQSHFRRFSS Trigger: TGAGGAGAATCGCCTGAAATGTGACTGGATCCAGCGCAATAACCACAAGACCTTTGACAGTCTTGTGCAAGCGAGAGTCCAGGATGCCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR CCA 90 bp | CTTGTATTCATGACTTCATTCATGAGCTGCTTCCTTGCCGCCCTTTaGAGTGCCAGCTCCCGATCCTTCTCAGCCAACTTCTTTGCCTTT | + |
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Preference number: 1 (lower is better) Translates to: LVFMTSFMSCFLAAL*SASSRSFSANFFAF Trigger: AAAGGCAAAGAAGTTGGCTGAGAAGGATCGGGAGCTGGCACTCCAAAGGGCGGCAAGGAAGCAGCTCATGAATGAAGTCATGAATACAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR GCA 90 bp | TCAGTATTGATGACAAAGCCTTGCATGGCATCCTGGACTCTCGCTTaGACAAGACTGTCAAAGGTCTTGTGGTTATTGCGCTGGATCCAG | + |
|
Preference number: 1 (lower is better) Translates to: SVLMTKPCMASWTLA*TRLSKVLWLLRWIQ Trigger: CTGGATCCAGCGCAATAACCACAAGACCTTTGACAGTCTTGTGCAAGCGAGAGTCCAGGATGCCATGCAAGGCTTTGTCATCAATACTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR GCA 90 bp | TTGGAGTTTTCTTGTATTCATGACTTCATTCATGAGCTGCTTCCTTaGCGCCCTTTGGAGTGCCAGCTCCCGATCCTTCTCAGCCAACTT | + |
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Preference number: 1 (lower is better) Translates to: LEFSCIHDFIHELLP*RPLECQLPILLSQL Trigger: AAGTTGGCTGAGAAGGATCGGGAGCTGGCACTCCAAAGGGCGGCAAGGAAGCAGCTCATGAATGAAGTCATGAATACAAGAAAACTCCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR CCA 90 bp | GGATTCTTTTTAGATGTTGCTCAGCTCTCTGAGCTTTGGGAGGCTTaGCTCTCTGGGTTCCCACTTCTGGTATTCTGTATTCTGGCAGCT | + |
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Preference number: 1 (lower is better) Translates to: GFFLDVAQLSELWEA*LSGFPLLVFCILAA Trigger: AGCTGCCAGAATACAGAATACCAGAAGTGGGAACCCAGAGAGCCAAGCCTCCCAAAGCTCAGAGAGCTGAGCAACATCTAAAAAGAATCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000177101.8 |
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| 3UTR TCA 90 bp | GTTATTGCGCTGGATCCAGTCACATTTCAGGCGATTCTCCTCATTTaGCTTGATGGAAGCCAAAGTAGTGTGGTACTTGTGGTAGCTGCG | + |
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Preference number: 1 (lower is better) Translates to: VIALDPVTFQAILLI*LDGSQSSVVLVVAA Trigger: CGCAGCTACCACAAGTACCACACTACTTTGGCTTCCATCAAGTCAAATGAGGAGAATCGCCTGAAATGTGACTGGATCCAGCGCAATAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR GCA 90 bp | TCACGTAGCTTATTGCGTCTCTCTTCAGTATTGATGACAAAGCCTTaGATGGCATCCTGGACTCTCGCTTGCACAAGACTGTCAAAGGTC | + |
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Preference number: 1 (lower is better) Translates to: SRSLLRLSSVLMTKP*MASWTLACTRLSKV Trigger: GACCTTTGACAGTCTTGTGCAAGCGAGAGTCCAGGATGCCATGCAAGGCTTTGTCATCAATACTGAAGAGAGACGCAATAAGCTACGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR CCA 90 bp | TTATATAAAACTATAGAGGAGGCTTGTCAGGGTAACCCCTTCGCATaGGGTGGACATTCTGGGACAGAGCTTGATTCTCAGAGAGGATCC | + |
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Preference number: 1 (lower is better) Translates to: LYKTIEEACQGNPFA*GGHSGTELDSQRGS Trigger: GGATCCTCTCTGAGAATCAAGCTCTGTCCCAGAATGTCCACCCCATGCGAAGGGGTTACCCTGACAAGCCTCCTCTATAGTTTTATATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR TCA 90 bp | CCTTCTCAGCCAACTTCTTTGCCTTTATGTCCTCCAGTAGTCTGTTaGGTTCTTTCTCCTGGGCTTTTTCTTCCTCTCGTCGCTGCATTA | + |
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Preference number: 1 (lower is better) Translates to: PSQPTSLPLCPPVVC*VLSPGLFLPLVAAL Trigger: TAATGCAGCGACGAGAGGAAGAAAAAGCCCAGGAGAAAGAACTCAACAGACTACTGGAGGACATAAAGGCAAAGAAGTTGGCTGAGAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR GCA 90 bp | TCATGGGCACAGACGCTGGGATTTGTGAAGAGCAAGGAGAGACTTTaGTACTGCAGCATAGCAAGTTCCTCTTTTAAAGAACAATGGCCT | + |
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Preference number: 1 (lower is better) Translates to: SWAQTLGFVKSKERL*YCSIASSSFKEQWP Trigger: AGGCCATTGTTCTTTAAAAGAGGAACTTGCTATGCTGCAGTAGCAAAGTCTCTCCTTGCTCTTCACAAATCCCAGCGTCTGTGCCCATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR GCA 90 bp | GCACAGACGCTGGGATTTGTGAAGAGCAAGGAGAGACTTTGCTACTaGAGCATAGCAAGTTCCTCTTTTAAAGAACAATGGCCTATACTC | + |
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Preference number: 1 (lower is better) Translates to: AQTLGFVKSKERLCY*SIASSSFKEQWPIL Trigger: GAGTATAGGCCATTGTTCTTTAAAAGAGGAACTTGCTATGCTGCAGTAGCAAAGTCTCTCCTTGCTCTTCACAAATCCCAGCGTCTGTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR-3UTR GCA 90 bp | GTAACCCCTTCGCATGGGGTGGACATTCTGGGACAGAGCTTGATTCTCAGAGAGTTCCTTCATCCTTCGTaGCCCCTGCCTTTGTGCCTG | + |
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Preference number: 2 (lower is better) Translates to: VTPSHGVDILGQSLILREFLHPS*PLPLCL Trigger: CAGGCACAAAGGCAGGGGGCACGAAGGATGAAGGAA...CTCTCTGAGAATCAAGCTCTGTCCCAGAATGTCCACCCCATGCGAAGGGGTTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR-3UTR CCA 90 bp | TGGCATCCTGGACTCTCGCTTGCACAAGACTGTCAAAGGTCTTGTGGTTATTGCGAGCTTTGGGAGGCTTaGCTCTCTGGGTTCCCACTT | + |
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Preference number: 2 (lower is better) Translates to: WHPGLSLAQDCQRSCGYCELWEA*LSGFPL Trigger: AAGTGGGAACCCAGAGAGCCAAGCCTCCCAAAGCTC...GCAATAACCACAAGACCTTTGACAGTCTTGTGCAAGCGAGAGTCCAGGATGCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177101.8 |
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| 3UTR CAA 90 bp | TGCATGGCATCCTGGACTCTCGCTTGCACAAGACTGTCAAAGGTCTaGTGGTTATTGCGCTGGATCCAGTCACATTTCAGGCGATTCTCC | + |
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Preference number: 2 (lower is better) Translates to: CMASWTLACTRLSKV*WLLRWIQSHFRRFS Trigger: GGAGAATCGCCTGAAATGTGACTGGATCCAGCGCAATAACCACAAGACCTTTGACAGTCTTGTGCAAGCGAGAGTCCAGGATGCCATGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR CAA 90 bp | TGTCTTCTCTTCTGCTTCTGGAGTTTTTCTTGTTCGTCCTCTCGTTaGATCTGTGCTTTGTTCTGCTCCAGGATGCGGGCCTCCTCTTCC | + |
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Preference number: 2 (lower is better) Translates to: CLLFCFWSFSCSSSR*ICALFCSRMRASSS Trigger: GGAAGAGGAGGCCCGCATCCTGGAGCAGAACAAAGCACAGATCAAACGAGAGGACGAACAAGAAAAACTCCAGAAGCAGAAGAGAAGACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR CAA 90 bp | TCTTGTATTCATGACTTCATTCATGAGCTGCTTCCTTGCCGCCCTTaGGAGTGCCAGCTCCCGATCCTTCTCAGCCAACTTCTTTGCCTT | + |
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Preference number: 2 (lower is better) Translates to: SCIHDFIHELLPCRP*ECQLPILLSQLLCL Trigger: AAGGCAAAGAAGTTGGCTGAGAAGGATCGGGAGCTGGCACTCCAAAGGGCGGCAAGGAAGCAGCTCATGAATGAAGTCATGAATACAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR-3UTR GCA 90 bp | CCTTCGCATGGGGTGGACATTCTGGGACAGAGCTTGATTCTCAGAGAGGATCCTCTCTCGTTTGATCTGTaGTTTGTTCTGCTCCAGGAT | + |
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Preference number: 2 (lower is better) Translates to: PSHGVDILGQSLILREDPLSFDL*FVLLQD Trigger: ATCCTGGAGCAGAACAAAGCACAGATCAAACGAGAG...AGGATCCTCTCTGAGAATCAAGCTCTGTCCCAGAATGTCCACCCCATGCGAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR CAA 90 bp | TCCTGGACTCTCGCTTGCACAAGACTGTCAAAGGTCTTGTGGTTATaGCGCTGGATCCAGTCACATTTCAGGCGATTCTCCTCATTTGAC | + |
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Preference number: 2 (lower is better) Translates to: SWTLACTRLSKVLWL*RWIQSHFRRFSSFD Trigger: GTCAAATGAGGAGAATCGCCTGAAATGTGACTGGATCCAGCGCAATAACCACAAGACCTTTGACAGTCTTGTGCAAGCGAGAGTCCAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR-3UTR TCA 90 bp | CACCTGAGCATCCAGACCCAGGCGTGTATTTTGTACCAGCTCTCTCTGTCTCTTGCGATTCTCCTCATTTaGCTTGATGGAAGCCAAAGT | + |
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Preference number: 2 (lower is better) Translates to: HLSIQTQACILYQLSLSLAILLI*LDGSQS Trigger: ACTTTGGCTTCCATCAAGTCAAATGAGGAGAATCGC...AAGAGACAGAGAGAGCTGGTACAAAATACACGCCTGGGTCTGGATGCTCAGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR-3UTR GCA 90 bp | CACCTGAGCATCCAGACCCAGGCGTGTATTTTGTACCAGCTCTCTCTGTCTCTTTCAGCTACAAACTCCTaGCTCTCCTTTTCCTTCTTC | + |
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Preference number: 2 (lower is better) Translates to: HLSIQTQACILYQLSLSLSATNS*LSFSFF Trigger: GAAGAAGGAAAAGGAGAGGCAGGAGTTTGTAGCTGA...AAGAGACAGAGAGAGCTGGTACAAAATACACGCCTGGGTCTGGATGCTCAGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR-3UTR CCA 90 bp | CACCTGAGCATCCAGACCCAGGCGTGTATTTTGTACCAGCTCTCTCTGTCTCTTCGTTCCCTGAACTGCTaGTCTAACTTTTCAGCTACA | + |
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Preference number: 2 (lower is better) Translates to: HLSIQTQACILYQLSLSLRSLNC*SNFSAT Trigger: TGTAGCTGAAAAGTTAGACCAGCAGTTCAGGGAACG...AAGAGACAGAGAGAGCTGGTACAAAATACACGCCTGGGTCTGGATGCTCAGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR CAA 90 bp | TTCAGTATTGATGACAAAGCCTTGCATGGCATCCTGGACTCTCGCTaGCACAAGACTGTCAAAGGTCTTGTGGTTATTGCGCTGGATCCA | + |
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Preference number: 2 (lower is better) Translates to: FSIDDKALHGILDSR*HKTVKGLVVIALDP Trigger: TGGATCCAGCGCAATAACCACAAGACCTTTGACAGTCTTGTGCAAGCGAGAGTCCAGGATGCCATGCAAGGCTTTGTCATCAATACTGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR-3UTR CCA 90 bp | TTATTGCGTCTCTCTTCAGTATTGATGACAAAGCCTTGCATGGCATCCTGGACTACCATGAGGACCCAGTaGTTGCAGGAGGAAGACATC | + |
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Preference number: 2 (lower is better) Translates to: LLRLSSVLMTKPCMASWTTMRTQ*LQEEDI Trigger: GATGTCTTCCTCCTGCAACCACTGGGTCCTCATGGT...AGTCCAGGATGCCATGCAAGGCTTTGTCATCAATACTGAAGAGAGACGCAATAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177101.8 |
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| 3UTR-3UTR CCA 90 bp | AGTATTGATGACAAAGCCTTGCATGGCATCCTGGACTCTCGCTTGCACAAGACTGAGCTTTGGGAGGCTTaGCTCTCTTTTCAATATGTG | + |
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Preference number: 2 (lower is better) Translates to: SIDDKALHGILDSRLHKTELWEA*LSFQYV Trigger: CACATATTGAAAAGAGAGCCAAGCCTCCCAAAGCTC...AGTCTTGTGCAAGCGAGAGTCCAGGATGCCATGCAAGGCTTTGTCATCAATACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR TCA 72 bp | GGCCAAGGCGAGGCACCGCGGCCCAGGGGGAAACACTaGTGCGGAGGTTTCCCCGGGATGCCCACCACCTCC | + |
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Preference number: 3 (lower is better) Translates to: GQGEAPRPRGKH*CGGFPGMPTTS Trigger: GGAGGTGGTGGGCATCCCGGGGAAACCTCCGCATCAGTGTTTCCCCCTGGGCCGCGGTGCCTCGCCTTGGCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000177101.8 |
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| 3UTR TCA 72 bp | CCCGCAAGCTGCGACCCCTGGAAGACGTTCCAAGGGTaGCCCTTCTGGTCGTCTGCTCTTCACTTCTGGGTT | + |
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Preference number: 3 (lower is better) Translates to: PASCDPWKTFQG*PFWSSALHFWV Trigger: AACCCAGAAGTGAAGAGCAGACGACCAGAAGGGTCACCCTTGGAACGTCTTCCAGGGGTCGCAGCTTGCGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177101.8 |
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| 3UTR GCA 72 bp | CCTTCATCCTTCGTGCCCCCTGCCTTTGTGCCTGGATaGTGGTCACCTGAGCATCCAGACCCAGGCGTGTAT | + |
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Preference number: 3 (lower is better) Translates to: PSSFVPPAFVPG*WSPEHPDPGVY Trigger: ATACACGCCTGGGTCTGGATGCTCAGGTGACCAGCATCCAGGCACAAAGGCAGGGGGCACGAAGGATGAAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR CCA 72 bp | TCATCCTTCGTGCCCCCTGCCTTTGTGCCTGGATGCTaGTCACCTGAGCATCCAGACCCAGGCGTGTATTTT | + |
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Preference number: 3 (lower is better) Translates to: SSFVPPAFVPGC*SPEHPDPGVYF Trigger: AAAATACACGCCTGGGTCTGGATGCTCAGGTGACCAGCATCCAGGCACAAAGGCAGGGGGCACGAAGGATGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR GCA 72 bp | TTCATTCATGAGCTGCTTCCTTGCCGCCCTTTGGAGTaGCAGCTCCCGATCCTTCTCAGCCAACTTCTTTGC | + |
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Preference number: 3 (lower is better) Translates to: FIHELLPCRPLE*QLPILLSQLLC Trigger: GCAAAGAAGTTGGCTGAGAAGGATCGGGAGCTGGCACTCCAAAGGGCGGCAAGGAAGCAGCTCATGAATGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR CCA 72 bp | CACTTCTGGTATTCTGTATTCTGGCAGCTGCCACTGTaGACCATGAGGACCCAGTGGTTGCAGGAGGAAGAC | + |
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Preference number: 3 (lower is better) Translates to: HFWYSVFWQLPL*TMRTQWLQEED Trigger: GTCTTCCTCCTGCAACCACTGGGTCCTCATGGTCCACAGTGGCAGCTGCCAGAATACAGAATACCAGAAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177101.8 |
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| 3UTR CCA 72 bp | ATGACTTCATTCATGAGCTGCTTCCTTGCCGCCCTTTaGAGTGCCAGCTCCCGATCCTTCTCAGCCAACTTC | + |
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Preference number: 3 (lower is better) Translates to: MTSFMSCFLAAL*SASSRSFSANF Trigger: GAAGTTGGCTGAGAAGGATCGGGAGCTGGCACTCCAAAGGGCGGCAAGGAAGCAGCTCATGAATGAAGTCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR CCA 72 bp | ATCTGCGCATTCCGTTCCTCAACCACCTTTTTCTCGTaGATGCTGGCCAATTTAGTGCGGAGCTCCTCACAG | + |
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Preference number: 3 (lower is better) Translates to: ICAFRSSTTFFS*MLANLVRSSSQ Trigger: CTGTGAGGAGCTCCGCACTAAATTGGCCAGCATCCACGAGAAAAAGGTGGTTGAGGAACGGAATGCGCAGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR CCA 72 bp | GTTGATTCCTATACTCCTCAGCCAAAGCACAGCGCCTaGCAAAGTCCTCCATGTCTTCCTGGTGAAGCACCT | + |
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Preference number: 3 (lower is better) Translates to: VDSYTPQPKHSA*QSPPCLPGEAP Trigger: AGGTGCTTCACCAGGAAGACATGGAGGACTTTGCCAGGCGCTGTGCTTTGGCTGAGGAGTATAGGAATCAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR CCA 72 bp | ACTATAGAGGAGGCTTGTCAGGGTAACCCCTTCGCATaGGGTGGACATTCTGGGACAGAGCTTGATTCTCAG | + |
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Preference number: 3 (lower is better) Translates to: TIEEACQGNPFA*GGHSGTELDSQ Trigger: CTGAGAATCAAGCTCTGTCCCAGAATGTCCACCCCATGCGAAGGGGTTACCCTGACAAGCCTCCTCTATAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR-3UTR CAA 90 bp | TCCTGGACTCTCGCTTGCACAAGACTGTCAAAGGTCTTGTGGTTATTGCGCTGGGAGCAAGGAGAGACTTaGCTACTGCAGCATAGCAAG | + |
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Preference number: 3 (lower is better) Translates to: SWTLACTRLSKVLWLLRWEQGET*LLQHSK Trigger: CTTGCTATGCTGCAGTAGCAAAGTCTCTCCTTGCTC...CCAGCGCAATAACCACAAGACCTTTGACAGTCTTGTGCAAGCGAGAGTCCAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR-3UTR CAA 90 bp | CCTTCGCATGGGGTGGACATTCTGGGACAGAGCTTGATTCTCAGAGAGGATCCTATTGATGACAAAGCCTaGCATGGCATCCTGGACTCT | + |
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Preference number: 3 (lower is better) Translates to: PSHGVDILGQSLILREDPIDDKA*HGILDS Trigger: AGAGTCCAGGATGCCATGCAAGGCTTTGTCATCAAT...AGGATCCTCTCTGAGAATCAAGCTCTGTCCCAGAATGTCCACCCCATGCGAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR GCA 72 bp | TCTTGTTCGTCCTCTCGTTTGATCTGTGCTTTGTTCTaGTCCAGGATGCGGGCCTCCTCTTCCTTCATCCTT | + |
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Preference number: 3 (lower is better) Translates to: SCSSSRLICALF*SRMRASSSFIL Trigger: AAGGATGAAGGAAGAGGAGGCCCGCATCCTGGAGCAGAACAAAGCACAGATCAAACGAGAGGACGAACAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR GCA 72 bp | CTGGAGTTTTTCTTGTTCGTCCTCTCGTTTGATCTGTaGTTTGTTCTGCTCCAGGATGCGGGCCTCCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: LEFFLFVLSFDL*FVLLQDAGLLF Trigger: GAAGAGGAGGCCCGCATCCTGGAGCAGAACAAAGCACAGATCAAACGAGAGGACGAACAAGAAAAACTCCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR GCA 72 bp | GAGGATCCTCTGTATTTTGTCCAGGCAGGCTTTGTTTaGTGCCAACCCTGCTTCAAATTCCTGGCGTTCCTC | + |
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Preference number: 3 (lower is better) Translates to: EDPLYFVQAGFV*CQPCFKFLAFL Trigger: GAGGAACGCCAGGAATTTGAAGCAGGGTTGGCAGCAAACAAAGCCTGCCTGGACAAAATACAGAGGATCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR-3UTR CAA 90 bp | TGGCATCCTGGACTCTCGCTTGCACAAGACTGTCAAAGGTCTTGTGGTTATTGCGAGCAAGGAGAGACTTaGCTACTGCAGCATAGCAAG | + |
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Preference number: 3 (lower is better) Translates to: WHPGLSLAQDCQRSCGYCEQGET*LLQHSK Trigger: CTTGCTATGCTGCAGTAGCAAAGTCTCTCCTTGCTC...GCAATAACCACAAGACCTTTGACAGTCTTGTGCAAGCGAGAGTCCAGGATGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR TCA 72 bp | TCTGCTTCTGGAGTTTTTCTTGTTCGTCCTCTCGTTTaGTCTGTGCTTTGTTCTGCTCCAGGATGCGGGCCT | + |
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Preference number: 3 (lower is better) Translates to: SASGVFLVRPLV*SVLCSAPGCGP Trigger: AGGCCCGCATCCTGGAGCAGAACAAAGCACAGATCAAACGAGAGGACGAACAAGAAAAACTCCAGAAGCAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR GCA 72 bp | ATGACAAAGCCTTGCATGGCATCCTGGACTCTCGCTTaGACAAGACTGTCAAAGGTCTTGTGGTTATTGCGC | + |
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Preference number: 3 (lower is better) Translates to: MTKPCMASWTLA*TRLSKVLWLLR Trigger: GCGCAATAACCACAAGACCTTTGACAGTCTTGTGCAAGCGAGAGTCCAGGATGCCATGCAAGGCTTTGTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR GCA 72 bp | AATTTAGTGCGGAGCTCCTCACAGCGTTCCCTGAACTaGTGGTCTAACTTTTCAGCTACAAACTCCTGCCTC | + |
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Preference number: 3 (lower is better) Translates to: NLVRSSSQRSLN*WSNFSATNSCL Trigger: GAGGCAGGAGTTTGTAGCTGAAAAGTTAGACCAGCAGTTCAGGGAACGCTGTGAGGAGCTCCGCACTAAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR CCA 72 bp | TGGACTCTCGCTTGCACAAGACTGTCAAAGGTCTTGTaGTTATTGCGCTGGATCCAGTCACATTTCAGGCGA | + |
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Preference number: 3 (lower is better) Translates to: WTLACTRLSKVL*LLRWIQSHFRR Trigger: TCGCCTGAAATGTGACTGGATCCAGCGCAATAACCACAAGACCTTTGACAGTCTTGTGCAAGCGAGAGTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR GCA 72 bp | TCGCTTGCACAAGACTGTCAAAGGTCTTGTGGTTATTaGGCTGGATCCAGTCACATTTCAGGCGATTCTCCT | + |
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Preference number: 3 (lower is better) Translates to: SLAQDCQRSCGY*AGSSHISGDSP Trigger: AGGAGAATCGCCTGAAATGTGACTGGATCCAGCGCAATAACCACAAGACCTTTGACAGTCTTGTGCAAGCGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR-3UTR CAA 90 bp | GCGTCTCTCTTCAGTATTGATGACAAAGCCTTGCATGGCATCCTGGACTCTCGCTTCTCCTCATTTGACTaGATGGAAGCCAAAGTAGTG | + |
|
Preference number: 3 (lower is better) Translates to: ASLFSIDDKALHGILDSRFSSFD*MEAKVV Trigger: CACTACTTTGGCTTCCATCAAGTCAAATGAGGAGAA...GCGAGAGTCCAGGATGCCATGCAAGGCTTTGTCATCAATACTGAAGAGAGACGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR-3UTR CAA 90 bp | TTGATTCCTATACTCCTCAGCCAAAGCACAGCGCCTGGCAAAGTCCTCCATGTCAGTTCACGTAGCTTATaGCGTCTCTCTTCAGTATTG | + |
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Preference number: 3 (lower is better) Translates to: LIPILLSQSTAPGKVLHVSSRSL*RLSSVL Trigger: CAATACTGAAGAGAGACGCAATAAGCTACGTGAACT...GACATGGAGGACTTTGCCAGGCGCTGTGCTTTGGCTGAGGAGTATAGGAATCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR-3UTR CAA 90 bp | AAAAGTTCACGTAGCTTATTGCGTCTCTCTTCAGTATTGATGACAAAGCCTTGCATGAGGACCCAGTGGTaGCAGGAGGAAGACATCCAA | + |
|
Preference number: 3 (lower is better) Translates to: KSSRSLLRLSSVLMTKPCMRTQW*QEEDIQ Trigger: TTGGATGTCTTCCTCCTGCAACCACTGGGTCCTCAT...GCAAGGCTTTGTCATCAATACTGAAGAGAGACGCAATAAGCTACGTGAACTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177101.8 |
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| 3UTR TCA 72 bp | CTGGATCCAGTCACATTTCAGGCGATTCTCCTCATTTaGCTTGATGGAAGCCAAAGTAGTGTGGTACTTGTG | + |
|
Preference number: 3 (lower is better) Translates to: LDPVTFQAILLI*LDGSQSSVVLV Trigger: CACAAGTACCACACTACTTTGGCTTCCATCAAGTCAAATGAGGAGAATCGCCTGAAATGTGACTGGATCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR TCA 72 bp | CTGCGCTGGATTCTTTTTAGATGTTGCTCAGCTCTCTaGGCTTTGGGAGGCTTGGCTCTCTTTTCAATATGT | + |
|
Preference number: 3 (lower is better) Translates to: LRWILFRCCSAL*ALGGLALFSIC Trigger: ACATATTGAAAAGAGAGCCAAGCCTCCCAAAGCTCAGAGAGCTGAGCAACATCTAAAAAGAATCCAGCGCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR CCA 72 bp | GGATTCTTTTTAGATGTTGCTCAGCTCTCTGAGCTTTaGGAGGCTTGGCTCTCTTTTCAATATGTGACTCCG | + |
|
Preference number: 3 (lower is better) Translates to: GFFLDVAQLSEL*EAWLSFQYVTP Trigger: CGGAGTCACATATTGAAAAGAGAGCCAAGCCTCCCAAAGCTCAGAGAGCTGAGCAACATCTAAAAAGAATCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR GCA 72 bp | CAGACGCTGGGATTTGTGAAGAGCAAGGAGAGACTTTaGTACTGCAGCATAGCAAGTTCCTCTTTTAAAGAA | + |
|
Preference number: 3 (lower is better) Translates to: QTLGFVKSKERL*YCSIASSSFKE Trigger: TTCTTTAAAAGAGGAACTTGCTATGCTGCAGTAGCAAAGTCTCTCCTTGCTCTTCACAAATCCCAGCGTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR GCA 72 bp | CTGGGATTTGTGAAGAGCAAGGAGAGACTTTGCTACTaGAGCATAGCAAGTTCCTCTTTTAAAGAACAATGG | + |
|
Preference number: 3 (lower is better) Translates to: LGFVKSKERLCY*SIASSSFKEQW Trigger: CCATTGTTCTTTAAAAGAGGAACTTGCTATGCTGCAGTAGCAAAGTCTCTCCTTGCTCTTCACAAATCCCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR TCA 72 bp | TACGCTGTTCATGCAGAGCAAGTTCTTCTTGTTCTCTaGGTTTTCGCTGCAATCTTTCTTGAACTTGGAGTT | + |
|
Preference number: 3 (lower is better) Translates to: YAVHAEQVLLVL*VFAAIFLELGV Trigger: AACTCCAAGTTCAAGAAAGATTGCAGCGAAAACTCAGAGAACAAGAAGAACTTGCTCTGCATGAACAGCGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR CAA 72 bp | TGGCAGCTGCCACTGTGGACCATGAGGACCCAGTGGTaGCAGGAGGAAGACATCCAAAGGCCCCGCAAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: WQLPLWTMRTQW*QEEDIQRPRKL Trigger: CAGCTTGCGGGGCCTTTGGATGTCTTCCTCCTGCAACCACTGGGTCCTCATGGTCCACAGTGGCAGCTGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177101.8 |
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| 3UTR CAA 72 bp | CTCGCTTGCACAAGACTGTCAAAGGTCTTGTGGTTATaGCGCTGGATCCAGTCACATTTCAGGCGATTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: LACTRLSKVLWL*RWIQSHFRRFS Trigger: GGAGAATCGCCTGAAATGTGACTGGATCCAGCGCAATAACCACAAGACCTTTGACAGTCTTGTGCAAGCGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR CAA 72 bp | TCCTGGACTCTCGCTTGCACAAGACTGTCAAAGGTCTaGTGGTTATTGCGCTGGATCCAGTCACATTTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: SWTLACTRLSKV*WLLRWIQSHFR Trigger: CCTGAAATGTGACTGGATCCAGCGCAATAACCACAAGACCTTTGACAGTCTTGTGCAAGCGAGAGTCCAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR CAA 72 bp | GATGACAAAGCCTTGCATGGCATCCTGGACTCTCGCTaGCACAAGACTGTCAAAGGTCTTGTGGTTATTGCG | + |
|
Preference number: 4 (lower is better) Translates to: DDKALHGILDSR*HKTVKGLVVIA Trigger: CGCAATAACCACAAGACCTTTGACAGTCTTGTGCAAGCGAGAGTCCAGGATGCCATGCAAGGCTTTGTCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR CAA 72 bp | TTCTGCTTCTGGAGTTTTTCTTGTTCGTCCTCTCGTTaGATCTGTGCTTTGTTCTGCTCCAGGATGCGGGCC | + |
|
Preference number: 4 (lower is better) Translates to: FCFWSFSCSSSR*ICALFCSRMRA Trigger: GGCCCGCATCCTGGAGCAGAACAAAGCACAGATCAAACGAGAGGACGAACAAGAAAAACTCCAGAAGCAGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| 3UTR CAA 72 bp | TCAGAGAGGATCCTCTGTATTTTGTCCAGGCAGGCTTaGTTTGCTGCCAACCCTGCTTCAAATTCCTGGCGT | + |
|
Preference number: 4 (lower is better) Translates to: SERILCILSRQA*FAANPASNSWR Trigger: ACGCCAGGAATTTGAAGCAGGGTTGGCAGCAAACAAAGCCTGCCTGGACAAAATACAGAGGATCCTCTCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| CDS-3UTR CCA 90 bp | GGATTCTTTTTAGATGTTGCTCAGCTCTCTGAGCTTTGGGAGGCTTGGCTCTCTGCCCTTAAATTCCCTTaGAACAGTGCCAAACTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: GFFLDVAQLSELWEAWLSALKFP*NSAKLL Trigger: CAGCAGTTTGGCACTGTTCCAAGGGAATTTAAGGGC...AGAGAGCCAAGCCTCCCAAAGCTCAGAGAGCTGAGCAACATCTAAAAAGAATCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR CAA 72 bp | CTTATTGCGTCTCTCTTCAGTATTGATGACAAAGCCTaGCATGGCATCCTGGACTCTCGCTTGCACAAGACT | + |
|
Preference number: 4 (lower is better) Translates to: LIASLFSIDDKA*HGILDSRLHKT Trigger: AGTCTTGTGCAAGCGAGAGTCCAGGATGCCATGCAAGGCTTTGTCATCAATACTGAAGAGAGACGCAATAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| CDS-3UTR CCA 90 bp | TTTCAACAACATAGCCAGAGGTCAAAGCCAGGTGTAACTACTAAGCAGGTAACTGCCCTTAAATTCCCTTaGAACAGTGCCAAACTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: FQQHSQRSKPGVTTKQVTALKFP*NSAKLL Trigger: CAGCAGTTTGGCACTGTTCCAAGGGAATTTAAGGGC...AGTTACCTGCTTAGTAGTTACACCTGGCTTTGACCTCTGGCTATGTTGTTGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR CAA 72 bp | TCGTTTTCTTCTGATGCCAAAAGTTCACGTAGCTTATaGCGTCTCTCTTCAGTATTGATGACAAAGCCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: SFSSDAKSSRSL*RLSSVLMTKPC Trigger: GCAAGGCTTTGTCATCAATACTGAAGAGAGACGCAATAAGCTACGTGAACTTTTGGCATCAGAAGAAAACGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| 3UTR CAA 72 bp | TTCGCTTATACGCTGTTCATGCAGAGCAAGTTCTTCTaGTTCTCTGAGTTTTCGCTGCAATCTTTCTTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: FAYTLFMQSKFF*FSEFSLQSFLN Trigger: GTTCAAGAAAGATTGCAGCGAAAACTCAGAGAACAAGAAGAACTTGCTCTGCATGAACAGCGTATAAGCGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| CDS-3UTR CAA 90 bp | TTGATTCCTATACTCCTCAGCCAAAGCACAGCGCCTGGCAAAGTCCTCCATGTCATTATGATCACCGCTTaGGGAGTGGGGCCCTTAAAT | + |
|
Preference number: 5 (lower is better) Translates to: LIPILLSQSTAPGKVLHVIMITA*GVGPLN Trigger: ATTTAAGGGCCCCACTCCCAAAGCGGTGATCATAAT...GACATGGAGGACTTTGCCAGGCGCTGTGCTTTGGCTGAGGAGTATAGGAATCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176435.8 |
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| CDS-3UTR CAA 90 bp | TTATTGCGTCTCTCTTCAGTATTGATGACAAAGCCTTGCATGGCATCCTGGACTATTATGATCACCGCTTaGGGAGTGGGGCCCTTAAAT | + |
|
Preference number: 5 (lower is better) Translates to: LLRLSSVLMTKPCMASWTIMITA*GVGPLN Trigger: ATTTAAGGGCCCCACTCCCAAAGCGGTGATCATAAT...AGTCCAGGATGCCATGCAAGGCTTTGTCATCAATACTGAAGAGAGACGCAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000176435.8 ENSMUST00000177101.8 |
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| CDS TCA 72 bp | CTGCGCTGGATTCTTTTTAGATGTTGCTCAGCTCTCTaGGCTTTGGGAGGCTTGGCTCTTATGATCACCGCT | + |
|
Preference number: 6 (lower is better) Translates to: LRWILFRCCSAL*ALGGLALMITA Trigger: AGCGGTGATCATAAGAGCCAAGCCTCCCAAAGCTCAGAGAGCTGAGCAACATCTAAAAAGAATCCAGCGCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114895.4 |
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