Pregenerated sensors for CFAP36 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020462Ensembl transcript IDs: ENSMUST00000020754.10, ENSMUST00000134599.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | TGGTTATTTGAGACAGACTCATCATGTAAACTAGGCTaGCCTCCAATTTGCTCTGACACTGGAGAGGACCAG | + |
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Preference number: 3 (lower is better) Translates to: WLFETDSSCKLG*PPICSDTGEDQ Trigger: CTGGTCCTCTCCAGTGTCAGAGCAAATTGGAGGCCAGCCTAGTTTACATGATGAGTCTGTCTCAAATAACCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR GCA 90 bp | AGAGGACCAGGAGTTCTCCTGATCCTTCTACTTCATTCAGCATCCTGGGTGCTAGCTGCCAACACAGGCTaGAAAATGGCCTGTGATGTG | + |
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Preference number: 4 (lower is better) Translates to: RGPGVLLILLLHSASWVLAANTG*KMACDV Trigger: CACATCACAGGCCATTTTGCAGCCTGTGTTGGCAGC...TAGCACCCAGGATGCTGAATGAAGTAGAAGGATCAGGAGAACTCCTGGTCCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR GCA 90 bp | CCAGGAGTTCTCCTGATCCTTCTACTTCATTCAGCATCCTGGGTGCTAGGATTACTCTGTCATTTCCTCTaGCTCCCTGGTAGGCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: PGVLLILLLHSASWVLGLLCHFL*LPGRLS Trigger: GGAAAGCCTACCAGGGAGGCAGAGGAAATGACAGAG...TAATCCTAGCACCCAGGATGCTGAATGAAGTAGAAGGATCAGGAGAACTCCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR TCA 90 bp | AGGACCAGGAGTTCTCCTGATCCTTCTACTTCATTCAGCATCCTGGGTGCTAGGTCAAACCTTTTTGTGTaGGGGAGGAAGTTTCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: RTRSSPDPSTSFSILGARSNLFV*GRKFQA Trigger: TGCCTGAAACTTCCTCCCTCACACAAAAAGGTTTGA...CCTAGCACCCAGGATGCTGAATGAAGTAGAAGGATCAGGAGAACTCCTGGTCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR GCA 90 bp | CTGACACTGGAGAGGACCAGGAGTTCTCCTGATCCTTCTACTTCATTCAGCATCCTATTGGTCCTTCCATaGTTGCATGCTCTAAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: LTLERTRSSPDPSTSFSILLVLP*LHALSQ Trigger: CTGGCTTAGAGCATGCAAGCATGGAAGGACCAATAG...GATGCTGAATGAAGTAGAAGGATCAGGAGAACTCCTGGTCCTCTCCAGTGTCAG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR GCA 90 bp | CCTGATCCTTCTACTTCATTCAGCATCCTGGGTGCTAGGATTATAGGCATGCACCCTTCCATGCTTGCATaGTCTAAGCCAGGTATCTTC | + |
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Preference number: 4 (lower is better) Translates to: PDPSTSFSILGARIIGMHPSMLA*SKPGIF Trigger: GAAGATACCTGGCTTAGAGCATGCAAGCATGGAAGG...GTGCATGCCTATAATCCTAGCACCCAGGATGCTGAATGAAGTAGAAGGATCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR TCA 90 bp | CCAGGAGTTCTCCTGATCCTTCTACTTCATTCAGCATCCTGGGTGCTAGGATTAATGCACTTTAACTTCTaGGGGTGGCTGTACAAAGTG | + |
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Preference number: 4 (lower is better) Translates to: PGVLLILLLHSASWVLGLMHFNF*GWLYKV Trigger: CACTTTGTACAGCCACCCTCAGAAGTTAAAGTGCAT...TAATCCTAGCACCCAGGATGCTGAATGAAGTAGAAGGATCAGGAGAACTCCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR TCA 90 bp | CCAGGAGTTCTCCTGATCCTTCTACTTCATTCAGCATCCTGGGTGCTAGGATTATGCCAAGGGTTGTACTaGCTGATTAGCAAAATGCAC | + |
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Preference number: 4 (lower is better) Translates to: PGVLLILLLHSASWVLGLCQGLY*LISKMH Trigger: GTGCATTTTGCTAATCAGTCAGTACAACCCTTGGCA...TAATCCTAGCACCCAGGATGCTGAATGAAGTAGAAGGATCAGGAGAACTCCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR GCA 90 bp | CTGACACTGGAGAGGACCAGGAGTTCTCCTGATCCTTCTACTTCATTCAGCATCGATAGTAAAATCTTCTaGTGCCAACACAGGCTGCAA | + |
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Preference number: 4 (lower is better) Translates to: LTLERTRSSPDPSTSFSIDSKIF*CQHRLQ Trigger: TTGCAGCCTGTGTTGGCAGCAGAAGATTTTACTATC...GATGCTGAATGAAGTAGAAGGATCAGGAGAACTCCTGGTCCTCTCCAGTGTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR CCA 90 bp | AGAGGACCAGGAGTTCTCCTGATCCTTCTACTTCATTCAGCATCCTGGGTGCTACCTGGATTATTCGGATaGCTTGAAGCTGCATTTCAA | + |
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Preference number: 4 (lower is better) Translates to: RGPGVLLILLLHSASWVLPGLFG*LEAAFQ Trigger: TTGAAATGCAGCTTCAAGCCATCCGAATAATCCAGG...TAGCACCCAGGATGCTGAATGAAGTAGAAGGATCAGGAGAACTCCTGGTCCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR TCA 90 bp | CCTGATCCTTCTACTTCATTCAGCATCCTGGGTGCTAGGATTATAGGCATGCACTATCTCTCTTCTGCTTaGGATAATGCTCTCGTTGAC | + |
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Preference number: 4 (lower is better) Translates to: PDPSTSFSILGARIIGMHYLSSA*DNALVD Trigger: GTCAACGAGAGCATTATCTCAAGCAGAAGAGAGATA...GTGCATGCCTATAATCCTAGCACCCAGGATGCTGAATGAAGTAGAAGGATCAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR GCA 90 bp | TCATCATGTAAACTAGGCTGGCCTCCAATTTGCTCTGACACTGGAGAGGACCAGAAAACTTCGCATTTCTaGTCCACAAAGTCCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: SSCKLGWPPICSDTGEDQKTSHF*STKSKM Trigger: CATCTTGGACTTTGTGGAGCAGAAATGCGAAGTTTT...CTGGTCCTCTCCAGTGTCAGAGCAAATTGGAGGCCAGCCTAGTTTACATGATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR CCA 90 bp | AGAGGACCAGGAGTTCTCCTGATCCTTCTACTTCATTCAGCATCCTGGGTGCTATTTTGCTCAGTATTCTaGATCTGCTTTGTCCTCGTA | + |
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Preference number: 4 (lower is better) Translates to: RGPGVLLILLLHSASWVLFCSVF*ICFVLV Trigger: TACGAGGACAAAGCAGATCCAGAATACTGAGCAAAA...TAGCACCCAGGATGCTGAATGAAGTAGAAGGATCAGGAGAACTCCTGGTCCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR GCA 90 bp | GATCCTTCTACTTCATTCAGCATCCTGGGTGCTAGGATTATAGGCATGCACCATGTAGGCTTTCCTTTTTaGTCAGTATTCTGGATCTGC | + |
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Preference number: 4 (lower is better) Translates to: DPSTSFSILGARIIGMHHVGFPF*SVFWIC Trigger: GCAGATCCAGAATACTGAGCAAAAAGGAAAGCCTAC...ATGGTGCATGCCTATAATCCTAGCACCCAGGATGCTGAATGAAGTAGAAGGATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR TCA 90 bp | TGGTTATTTGAGACAGACTCATCATGTAAACTAGGCTGGCCTCCAATTTGCTCTATTATTCGGATGGCTTaGAGCTGCATTTCAATGTTC | + |
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Preference number: 4 (lower is better) Translates to: WLFETDSSCKLGWPPICSIIRMA*SCISMF Trigger: GAACATTGAAATGCAGCTTCAAGCCATCCGAATAAT...AGAGCAAATTGGAGGCCAGCCTAGTTTACATGATGAGTCTGTCTCAAATAACCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR CCA 90 bp | TGGTTATTTGAGACAGACTCATCATGTAAACTAGGCTGGCCTCCAATTTGCTCTTTCCTTTCTTCCTCCTaGTCATATTCTTCTTTTGAT | + |
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Preference number: 4 (lower is better) Translates to: WLFETDSSCKLGWPPICSFLSSS*SYSSFD Trigger: ATCAAAAGAAGAATATGACCAGGAGGAAGAAAGGAA...AGAGCAAATTGGAGGCCAGCCTAGTTTACATGATGAGTCTGTCTCAAATAACCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR CAA 90 bp | CTGACACTGGAGAGGACCAGGAGTTCTCCTGATCCTTCTACTTCATTCAGCATCTTGGTCCTTCCATGCTaGCATGCTCTAAGCCAGGTA | + |
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Preference number: 5 (lower is better) Translates to: LTLERTRSSPDPSTSFSILVLPC*HALSQV Trigger: TACCTGGCTTAGAGCATGCAAGCATGGAAGGACCAA...GATGCTGAATGAAGTAGAAGGATCAGGAGAACTCCTGGTCCTCTCCAGTGTCAG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS GCA 90 bp | TCTGCCTCCCTGGTAGGCTTTCCTTTTTGCTCAGTATTCTGGATCTaGTTTGTCCTCGTATCCTTTCTCATGGACAGCAGCTTATCTCTC | + |
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Preference number: 5 (lower is better) Translates to: SASLVGFPFCSVFWI*FVLVSFLMDSSLSL Trigger: GAGAGATAAGCTGCTGTCCATGAGAAAGGATACGAGGACAAAGCAGATCCAGAATACTGAGCAAAAAGGAAAGCCTACCAGGGAGGCAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS GCA 90 bp | GGCTTCTCTGTCATTTCCTCTGCCTCCCTGGTAGGCTTTCCTTTTTaGTCAGTATTCTGGATCTGCTTTGTCCTCGTATCCTTTCTCATG | + |
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Preference number: 5 (lower is better) Translates to: GFSVISSASLVGFPF*SVFWICFVLVSFLM Trigger: CATGAGAAAGGATACGAGGACAAAGCAGATCCAGAATACTGAGCAAAAAGGAAAGCCTACCAGGGAGGCAGAGGAAATGACAGAGAAGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR CAA 90 bp | TCATCATGTAAACTAGGCTGGCCTCCAATTTGCTCTGACACTGGAGAGGACCAGCAAGTGCTGACAAATTaGCTATTGGTCCTTCCATGC | + |
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Preference number: 5 (lower is better) Translates to: SSCKLGWPPICSDTGEDQQVLTN*LLVLPC Trigger: GCATGGAAGGACCAATAGCAAATTTGTCAGCACTTG...CTGGTCCTCTCCAGTGTCAGAGCAAATTGGAGGCCAGCCTAGTTTACATGATGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR CAA 90 bp | AGGACCAGGAGTTCTCCTGATCCTTCTACTTCATTCAGCATCCTGGGTGCTAGGTATTCTGGATCTGCTTaGTCCTCGTATCCTTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: RTRSSPDPSTSFSILGARYSGSA*SSYPFS Trigger: TGAGAAAGGATACGAGGACAAAGCAGATCCAGAATA...CCTAGCACCCAGGATGCTGAATGAAGTAGAAGGATCAGGAGAACTCCTGGTCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS TCA 90 bp | CCATGCTTGCATGCTCTAAGCCAGGTATCTTCAAACCTTTTTGTGTaGGGGAGGAAGTTTCAGGCAACAACTCCATCTTTCTTGCCAAGG | + |
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Preference number: 5 (lower is better) Translates to: PCLHALSQVSSNLFV*GRKFQATTPSFLPR Trigger: CCTTGGCAAGAAAGATGGAGTTGTTGCCTGAAACTTCCTCCCTCACACAAAAAGGTTTGAAGATACCTGGCTTAGAGCATGCAAGCATGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR CAA 90 bp | AGGACCAGGAGTTCTCCTGATCCTTCTACTTCATTCAGCATCCTGGGTGCTAGGGATTATTCGGATGGCTaGAAGCTGCATTTCAATGTT | + |
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Preference number: 5 (lower is better) Translates to: RTRSSPDPSTSFSILGARDYSDG*KLHFNV Trigger: AACATTGAAATGCAGCTTCAAGCCATCCGAATAATC...CCTAGCACCCAGGATGCTGAATGAAGTAGAAGGATCAGGAGAACTCCTGGTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS TCA 90 bp | TCCTCGTATCCTTTCTCATGGACAGCAGCTTATCTCTCTTCTGCTTaGGATAATGCTCTCGTTGACGTAACTCTTCTGTTCCAAGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: SSYPFSWTAAYLSSA*DNALVDVTLLFQVL Trigger: CAGCACTTGGAACAGAAGAGTTACGTCAACGAGAGCATTATCTCAAGCAGAAGAGAGATAAGCTGCTGTCCATGAGAAAGGATACGAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR CAA 90 bp | CCTGATCCTTCTACTTCATTCAGCATCCTGGGTGCTAGGATTATAGGCATGCACGGACGTGCACGCTTCTaGAAACTGATCTTCATTAAT | + |
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Preference number: 5 (lower is better) Translates to: PDPSTSFSILGARIIGMHGRARF*KLIFIN Trigger: ATTAATGAAGATCAGTTTCAAGAAGCGTGCACGTCC...GTGCATGCCTATAATCCTAGCACCCAGGATGCTGAATGAAGTAGAAGGATCAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS-3UTR CAA 90 bp | CCTGATCCTTCTACTTCATTCAGCATCCTGGGTGCTAGGATTATAGGCATGCACTATCTTCAAACCTTTTaGTGTGAGGGAGGAAGTTTC | + |
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Preference number: 5 (lower is better) Translates to: PDPSTSFSILGARIIGMHYLQTF*CEGGSF Trigger: GAAACTTCCTCCCTCACACAAAAAGGTTTGAAGATA...GTGCATGCCTATAATCCTAGCACCCAGGATGCTGAATGAAGTAGAAGGATCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS TCA 90 bp | CAGTCAGGTAACACACCATTCCTCTCCTGGATTATTCGGATGGCTTaGAGCTGCATTTCAATGTTCTTCTGGACCATCATTGCTTTAAAG | + |
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Preference number: 5 (lower is better) Translates to: QSGNTPFLSWIIRMA*SCISMFFWTIIALK Trigger: CTTTAAAGCAATGATGGTCCAGAAGAACATTGAAATGCAGCTTCAAGCCATCCGAATAATCCAGGAGAGGAATGGTGTGTTACCTGACTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020754.10 ENSMUST00000134599.2 |
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| CDS TCA 90 bp | GTTTCAGGCAACAACTCCATCTTTCTTGCCAAGGGTTGTACTGACTaGTTAGCAAAATGCACTTTAACTTCTGAGGGTGGCTGTACAAAG | + |
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Preference number: 5 (lower is better) Translates to: VSGNNSIFLAKGCTD*LAKCTLTSEGGCTK Trigger: CTTTGTACAGCCACCCTCAGAAGTTAAAGTGCATTTTGCTAATCAGTCAGTACAACCCTTGGCAAGAAAGATGGAGTTGTTGCCTGAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS CCA 90 bp | TTAAGCAGTCAGGTAACACACCATTCCTCTCCTGGATTATTCGGATaGCTTGAAGCTGCATTTCAATGTTCTTCTGGACCATCATTGCTT | + |
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Preference number: 5 (lower is better) Translates to: LSSQVTHHSSPGLFG*LEAAFQCSSGPSLL Trigger: AAGCAATGATGGTCCAGAAGAACATTGAAATGCAGCTTCAAGCCATCCGAATAATCCAGGAGAGGAATGGTGTGTTACCTGACTGCTTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020754.10 ENSMUST00000134599.2 |
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| CDS GCA 90 bp | TCGGATGGCTTGAAGCTGCATTTCAATGTTCTTCTGGACCATCATTaGTTTAAAGATAGTAAAATCTTCTGCTGCCAACACAGGCTGCAA | + |
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Preference number: 5 (lower is better) Translates to: SDGLKLHFNVLLDHH*FKDSKIFCCQHRLQ Trigger: TTGCAGCCTGTGTTGGCAGCAGAAGATTTTACTATCTTTAAAGCAATGATGGTCCAGAAGAACATTGAAATGCAGCTTCAAGCCATCCGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020754.10 ENSMUST00000134599.2 |
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| CDS GCA 90 bp | CAACCAGCTCTTTGTATTCTTGATGGATTTCTGTGTAGGTTAATTTaGTTTCTTCTTCATCATCAAAAACTTCGCATTTCTGCTCCACAA | + |
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Preference number: 5 (lower is better) Translates to: QPALCILDGFLCRLI*FLLHHQKLRISAPQ Trigger: TTGTGGAGCAGAAATGCGAAGTTTTTGATGATGAAGAAGAAAGCAAATTAACCTACACAGAAATCCATCAAGAATACAAAGAGCTGGTTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS TCA 72 bp | ATCTTCTGCTGCCAACACAGGCTGCAAAATGGCCTGTaGTGTGCGCGTCTTCGCCAGAGGGGACGTGCACGC | + |
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Preference number: 6 (lower is better) Translates to: IFCCQHRLQNGL*CARLRQRGRAR Trigger: GCGTGCACGTCCCCTCTGGCGAAGACGCGCACATCACAGGCCATTTTGCAGCCTGTGTTGGCAGCAGAAGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020754.10 ENSMUST00000134599.2 |
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| CDS GCA 72 bp | GTCATTTCCTCTGCCTCCCTGGTAGGCTTTCCTTTTTaGTCAGTATTCTGGATCTGCTTTGTCCTCGTATCC | + |
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Preference number: 6 (lower is better) Translates to: VISSASLVGFPF*SVFWICFVLVS Trigger: GGATACGAGGACAAAGCAGATCCAGAATACTGAGCAAAAAGGAAAGCCTACCAGGGAGGCAGAGGAAATGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS CAA 72 bp | TGTGCGCGTCTTCGCCAGAGGGGACGTGCACGCTTCTaGAAACTGATCTTCATTAATTCCAATCTCTTTGAG | + |
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Preference number: 6 (lower is better) Translates to: CARLRQRGRARF*KLIFINSNLFE Trigger: CTCAAAGAGATTGGAATTAATGAAGATCAGTTTCAAGAAGCGTGCACGTCCCCTCTGGCGAAGACGCGCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020754.10 ENSMUST00000134599.2 |
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| CDS CAA 90 bp | TGGCTTCTCTGTCATTTCCTCTGCCTCCCTGGTAGGCTTTCCTTTTaGCTCAGTATTCTGGATCTGCTTTGTCCTCGTATCCTTTCTCAT | + |
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Preference number: 6 (lower is better) Translates to: WLLCHFLCLPGRLSF*LSILDLLCPRILSH Trigger: ATGAGAAAGGATACGAGGACAAAGCAGATCCAGAATACTGAGCAAAAAGGAAAGCCTACCAGGGAGGCAGAGGAAATGACAGAGAAGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS GCA 72 bp | CTGGTAGGCTTTCCTTTTTGCTCAGTATTCTGGATCTaGTTTGTCCTCGTATCCTTTCTCATGGACAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: LVGFPFCSVFWI*FVLVSFLMDSS Trigger: GCTGCTGTCCATGAGAAAGGATACGAGGACAAAGCAGATCCAGAATACTGAGCAAAAAGGAAAGCCTACCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS CAA 72 bp | TGTCATTTCCTCTGCCTCCCTGGTAGGCTTTCCTTTTaGCTCAGTATTCTGGATCTGCTTTGTCCTCGTATC | + |
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Preference number: 6 (lower is better) Translates to: CHFLCLPGRLSF*LSILDLLCPRI Trigger: GATACGAGGACAAAGCAGATCCAGAATACTGAGCAAAAAGGAAAGCCTACCAGGGAGGCAGAGGAAATGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS TCA 72 bp | CCTTTCTCATGGACAGCAGCTTATCTCTCTTCTGCTTaGGATAATGCTCTCGTTGACGTAACTCTTCTGTTC | + |
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Preference number: 6 (lower is better) Translates to: PFSWTAAYLSSA*DNALVDVTLLF Trigger: GAACAGAAGAGTTACGTCAACGAGAGCATTATCTCAAGCAGAAGAGAGATAAGCTGCTGTCCATGAGAAAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS CAA 72 bp | GTAACTCTTCTGTTCCAAGTGCTGACAAATTTGCTATaGGTCCTTCCATGCTTGCATGCTCTAAGCCAGGTA | + |
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Preference number: 6 (lower is better) Translates to: VTLLFQVLTNLL*VLPCLHALSQV Trigger: TACCTGGCTTAGAGCATGCAAGCATGGAAGGACCAATAGCAAATTTGTCAGCACTTGGAACAGAAGAGTTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS TCA 72 bp | AACACACCATTCCTCTCCTGGATTATTCGGATGGCTTaGAGCTGCATTTCAATGTTCTTCTGGACCATCATT | + |
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Preference number: 6 (lower is better) Translates to: NTPFLSWIIRMA*SCISMFFWTII Trigger: AATGATGGTCCAGAAGAACATTGAAATGCAGCTTCAAGCCATCCGAATAATCCAGGAGAGGAATGGTGTGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020754.10 ENSMUST00000134599.2 |
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| CDS TCA 72 bp | AACAACTCCATCTTTCTTGCCAAGGGTTGTACTGACTaGTTAGCAAAATGCACTTTAACTTCTGAGGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: NNSIFLAKGCTD*LAKCTLTSEGG Trigger: GCCACCCTCAGAAGTTAAAGTGCATTTTGCTAATCAGTCAGTACAACCCTTGGCAAGAAAGATGGAGTTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS GCA 72 bp | GCTGACAAATTTGCTATTGGTCCTTCCATGCTTGCATaGTCTAAGCCAGGTATCTTCAAACCTTTTTGTGTG | + |
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Preference number: 6 (lower is better) Translates to: ADKFAIGPSMLA*SKPGIFKPFCV Trigger: CACACAAAAAGGTTTGAAGATACCTGGCTTAGAGCATGCAAGCATGGAAGGACCAATAGCAAATTTGTCAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020754.10 |
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| CDS GCA 72 bp | CGATCAGAAAGCACTGATGCTGGTCCTTCAAAAGAATaGCACATTTGTATATCTCGTTTGTTAGAAAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: RSESTDAGPSKE*HICISRLLESS Trigger: AGAGCTTTCTAACAAACGAGATATACAAATGTGGCATTCTTTTGAAGGACCAGCATCAGTGCTTTCTGATCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134599.2 |
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| CDS TCA 72 bp | CTTTCTTCTTCATCATCAAAAACGATCAGAAAGCACTaGTGCTGGTCCTTCAAAAGAATGCCACATTTGTAT | + |
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Preference number: 6 (lower is better) Translates to: LSSSSSKTIRKH*CWSFKRMPHLY Trigger: ATACAAATGTGGCATTCTTTTGAAGGACCAGCATCAGTGCTTTCTGATCGTTTTTGATGATGAAGAAGAAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000134599.2 |
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| CDS GCA 72 bp | TTGAAGCTGCATTTCAATGTTCTTCTGGACCATCATTaGTTTAAAGATAGTAAAATCTTCTGCTGCCAACAC | + |
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Preference number: 6 (lower is better) Translates to: LKLHFNVLLDHH*FKDSKIFCCQH Trigger: GTGTTGGCAGCAGAAGATTTTACTATCTTTAAAGCAATGATGGTCCAGAAGAACATTGAAATGCAGCTTCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020754.10 ENSMUST00000134599.2 |
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