Pregenerated sensors for CFAP300 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053070Ensembl transcript IDs: ENSMUST00000065291.2, ENSMUST00000215478.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGTTTGTTCTCTTCAGCTCAATATGGGCTCTTTACAGTGGCCTTTaGTTGGTCTGCAAAGAGCCCATAGATCTACCTGTTCGTGCTGAC | + |
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Preference number: 1 (lower is better) Translates to: VFVLFSSIWALYSGL*LVCKEPIDLPVRAD Trigger: GTCAGCACGAACAGGTAGATCTATGGGCTCTTTGCAGACCAATCAAAGGCCACTGTAAAGAGCCCATATTGAGCTGAAGAGAACAAACAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| 3UTR CCA 90 bp | CACTTTGGTGTTTGTTCTCTTCAGCTCAATATGGGCTCTTTACAGTaGCCTTTGATTGGTCTGCAAAGAGCCCATAGATCTACCTGTTCG | + |
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Preference number: 1 (lower is better) Translates to: HFGVCSLQLNMGSLQ*PLIGLQRAHRSTCS Trigger: CGAACAGGTAGATCTATGGGCTCTTTGCAGACCAATCAAAGGCCACTGTAAAGAGCCCATATTGAGCTGAAGAGAACAAACACCAAAGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| 3UTR-3UTR TCA 90 bp | TCAAAAGGTAGAGGCACGATGATCAGGAGTTCAAGACCAGCCTTACCTACAAAGCTTTACAGTGGCCTTTaGTTGGTCTGCAAAGAGCCC | + |
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Preference number: 2 (lower is better) Translates to: SKGRGTMIRSSRPALPTKLYSGL*LVCKEP Trigger: GGGCTCTTTGCAGACCAATCAAAGGCCACTGTAAAG...CTTTGTAGGTAAGGCTGGTCTTGAACTCCTGATCATCGTGCCTCTACCTTTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| 3UTR-3UTR TCA 90 bp | GCCAGGCCTGGTGGTCCATGTTTGTATTACAATGCTCAAAAGGTAGAGGCACGAACAAACATGACCTTGTaGCTTTCTACTTTGTACAGA | + |
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Preference number: 2 (lower is better) Translates to: ARPGGPCLYYNAQKVEARTNMTL*LSTLYR Trigger: TCTGTACAAAGTAGAAAGTCACAAGGTCATGTTTGT...TCGTGCCTCTACCTTTTGAGCATTGTAATACAAACATGGACCACCAGGCCTGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| 3UTR-3UTR TCA 90 bp | AACAGTATAATAGATGGCTTAAACAATCCTAAGCCATGTGCCCTACACCATAGCTACAGGACATTCACATaGCGCTTGATGGGGTCCACA | + |
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Preference number: 2 (lower is better) Translates to: NSIIDGLNNPKPCALHHSYRTFT*RLMGST Trigger: TGTGGACCCCATCAAGCGTCATGTGAATGTCCTGTA...GCTATGGTGTAGGGCACATGGCTTAGGATTGTTTAAGCCATCTATTATACTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215478.2 |
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| 3UTR-3UTR CCA 90 bp | TCAGGAGTTCAAGACCAGCCTTACCTACAAAGTAAGTTCAAGGCTCACCTATCCGAGAAAAGGGCACTTTaGTGTTTGTTCTCTTCAGCT | + |
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Preference number: 2 (lower is better) Translates to: SGVQDQPYLQSKFKAHLSEKRAL*CLFSSA Trigger: AGCTGAAGAGAACAAACACCAAAGTGCCCTTTTCTC...GGATAGGTGAGCCTTGAACTTACTTTGTAGGTAAGGCTGGTCTTGAACTCCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| 3UTR CAA 90 bp | CAGCACAAGTATGCTGGGAAAATTGAGAAAAGGGCACTTTGGTGTTaGTTCTCTTCAGCTCAATATGGGCTCTTTACAGTGGCCTTTGAT | + |
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Preference number: 2 (lower is better) Translates to: QHKYAGKIEKRALWC*FSSAQYGLFTVAFD Trigger: ATCAAAGGCCACTGTAAAGAGCCCATATTGAGCTGAAGAGAACAAACACCAAAGTGCCCTTTTCTCAATTTTCCCAGCATACTTGTGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| 3UTR-3UTR TCA 90 bp | CAATGCTCAAAAGGTAGAGGCACGATGATCAGGAGTTCAAGACCAGCCTTACCTGACACAGAGACACAGTaGAGTAAAGAACAGTATAAT | + |
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Preference number: 2 (lower is better) Translates to: QCSKGRGTMIRSSRPALPDTETQ*SKEQYN Trigger: ATTATACTGTTCTTTACTTCACTGTGTCTCTGTGTC...AGGTAAGGCTGGTCTTGAACTCCTGATCATCGTGCCTCTACCTTTTGAGCATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| 3UTR-3UTR CCA 90 bp | AATGTTTCTATTCTAATCCAGAGACAATTAGCTTCTCAAAGGCCAGGCCTGGTGATGGGCTCTTTACAGTaGCCTTTGATTGGTCTGCAA | + |
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Preference number: 2 (lower is better) Translates to: NVSILIQRQLASQRPGLVMGSLQ*PLIGLQ Trigger: TTGCAGACCAATCAAAGGCCACTGTAAAGAGCCCAT...CACCAGGCCTGGCCTTTGAGAAGCTAATTGTCTCTGGATTAGAATAGAAACATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| 3UTR-3UTR GCA 90 bp | AATGTTTCTATTCTAATCCAGAGACAATTAGCTTCTCAAAGGCCAGGCCTGGTGATGTTTGTATTACAATaGTCAAAAGGTAGAGGCACG | + |
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Preference number: 2 (lower is better) Translates to: NVSILIQRQLASQRPGLVMFVLQ*SKGRGT Trigger: CGTGCCTCTACCTTTTGAGCATTGTAATACAAACAT...CACCAGGCCTGGCCTTTGAGAAGCTAATTGTCTCTGGATTAGAATAGAAACATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| 3UTR GCA 72 bp | AAAGGCCAGGCCTGGTGGTCCATGTTTGTATTACAATaGTCAAAAGGTAGAGGCACGATGATCAGGAGTTCA | + |
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Preference number: 3 (lower is better) Translates to: KGQAWWSMFVLQ*SKGRGTMIRSS Trigger: TGAACTCCTGATCATCGTGCCTCTACCTTTTGAGCATTGTAATACAAACATGGACCACCAGGCCTGGCCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| 3UTR TCA 72 bp | CTCTTCAGCTCAATATGGGCTCTTTACAGTGGCCTTTaGTTGGTCTGCAAAGAGCCCATAGATCTACCTGTT | + |
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Preference number: 3 (lower is better) Translates to: LFSSIWALYSGL*LVCKEPIDLPV Trigger: AACAGGTAGATCTATGGGCTCTTTGCAGACCAATCAAAGGCCACTGTAAAGAGCCCATATTGAGCTGAAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| 3UTR TCA 72 bp | CTATCCGGGATTCCAGCACAAGTATGCTGGGAAAATTaGGAAAAGGGCACTTTGGTGTTTGTTCTCTTCAGC | + |
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Preference number: 3 (lower is better) Translates to: LSGIPAQVCWEN*EKGTLVFVLFS Trigger: GCTGAAGAGAACAAACACCAAAGTGCCCTTTTCTCAATTTTCCCAGCATACTTGTGCTGGAATCCCGGATAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| 3UTR-3UTR CAA 90 bp | CTCAAAGGCCAGGCCTGGTGGTCCATGTTTGTATTACAATGCTCAAAAGGTAGAAGTATGCTGGGAAAATaGAGAAAAGGGCACTTTGGT | + |
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Preference number: 3 (lower is better) Translates to: LKGQAWWSMFVLQCSKGRSMLGK*RKGHFG Trigger: ACCAAAGTGCCCTTTTCTCAATTTTCCCAGCATACT...TCTACCTTTTGAGCATTGTAATACAAACATGGACCACCAGGCCTGGCCTTTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| 3UTR CCA 72 bp | GTTTGTTCTCTTCAGCTCAATATGGGCTCTTTACAGTaGCCTTTGATTGGTCTGCAAAGAGCCCATAGATCT | + |
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Preference number: 3 (lower is better) Translates to: VCSLQLNMGSLQ*PLIGLQRAHRS Trigger: AGATCTATGGGCTCTTTGCAGACCAATCAAAGGCCACTGTAAAGAGCCCATATTGAGCTGAAGAGAACAAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| 3UTR TCA 72 bp | ATAGATCTACCTGTTCGTGCTGACACAGAGACACAGTaGAGTAAAGAACAGTATAATAGATGGCTTAAACAA | + |
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Preference number: 3 (lower is better) Translates to: IDLPVRADTETQ*SKEQYNRWLKQ Trigger: TTGTTTAAGCCATCTATTATACTGTTCTTTACTTCACTGTGTCTCTGTGTCAGCACGAACAGGTAGATCTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065291.2 ENSMUST00000215478.2 |
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| 3UTR TCA 72 bp | ATGTGGCTGAATCTTAATAGAACAAACATGACCTTGTaGCTTTCTACTTTGTACAGAATCTATCCGGGATTC | + |
|
Preference number: 3 (lower is better) Translates to: MWLNLNRTNMTL*LSTLYRIYPGF Trigger: GAATCCCGGATAGATTCTGTACAAAGTAGAAAGTCACAAGGTCATGTTTGTTCTATTAAGATTCAGCCACAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS-3UTR CCA 90 bp | ACAATCCTAAGCCATGTGCCCTACACCATAGCAGTGGTACAGGACATTCACATGGGATTCTGCCCAGCATaGACCACTGGCGGAGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: TILSHVPYTIAVVQDIHMGFCPA*TTGGGG Trigger: GCCGCCTCCGCCAGTGGTCCATGCTGGGCAGAATCC...CATGTGAATGTCCTGTACCACTGCTATGGTGTAGGGCACATGGCTTAGGATTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215478.2 |
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| CDS-3UTR GCA 90 bp | CTAATCCAGAGACAATTAGCTTCTCAAAGGCCAGGCCTGGTGGTCCATGTTTGTCCTGCGCCTGGATTCTaGCCAGCATGGACCACTGGC | + |
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Preference number: 4 (lower is better) Translates to: LIQRQLASQRPGLVVHVCPAPGF*PAWTTG Trigger: GCCAGTGGTCCATGCTGGGCAGAATCCAGGCGCAGG...ACAAACATGGACCACCAGGCCTGGCCTTTGAGAAGCTAATTGTCTCTGGATTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS-3UTR CCA 90 bp | TCAAAAGGTAGAGGCACGATGATCAGGAGTTCAAGACCAGCCTTACCTACAAAGGGATTCTGCCCAGCATaGACCACTGGCGGAGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: SKGRGTMIRSSRPALPTKGFCPA*TTGGGG Trigger: GCCGCCTCCGCCAGTGGTCCATGCTGGGCAGAATCC...CTTTGTAGGTAAGGCTGGTCTTGAACTCCTGATCATCGTGCCTCTACCTTTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS-3UTR TCA 90 bp | CTAATCCAGAGACAATTAGCTTCTCAAAGGCCAGGCCTGGTGGTCCATGTTTGTACGTCTGGTCGAAGCTaGACGCCTGCGCCTGGATTC | + |
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Preference number: 4 (lower is better) Translates to: LIQRQLASQRPGLVVHVCTSGRS*TPAPGF Trigger: GAATCCAGGCGCAGGCGTTCAGCTTCGACCAGACGT...ACAAACATGGACCACCAGGCCTGGCCTTTGAGAAGCTAATTGTCTCTGGATTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS-3UTR TCA 90 bp | GATGGCTTAAACAATCCTAAGCCATGTGCCCTACACCATAGCAGTGGTACAGGAACGTCTGGTCGAAGCTaGACGCCTGCGCCTGGATTC | + |
|
Preference number: 4 (lower is better) Translates to: DGLNNPKPCALHHSSGTGTSGRS*TPAPGF Trigger: GAATCCAGGCGCAGGCGTTCAGCTTCGACCAGACGT...TCCTGTACCACTGCTATGGTGTAGGGCACATGGCTTAGGATTGTTTAAGCCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215478.2 |
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| CDS-3UTR GCA 90 bp | AACAATCCTAAGCCATGTGCCCTACACCATAGCAGTGGTACAGGACATTCACATTCGAAGCTGAACGCCTaGGCCTGGATTCTGCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: NNPKPCALHHSSGTGHSHSKLNA*AWILPS Trigger: GCTGGGCAGAATCCAGGCGCAGGCGTTCAGCTTCGA...ATGTGAATGTCCTGTACCACTGCTATGGTGTAGGGCACATGGCTTAGGATTGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215478.2 |
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| CDS-3UTR CCA 90 bp | CTGTTCGTGCTGACACAGAGACACAGTGAAGTAAAGAACAGTATAATAGATGGCCCCAGCATGGACCACTaGCGGAGGCGGCTGGTGATC | + |
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Preference number: 4 (lower is better) Translates to: LFVLTQRHSEVKNSIIDGPSMDH*RRRLVI Trigger: GATCACCAGCCGCCTCCGCCAGTGGTCCATGCTGGG...GCCATCTATTATACTGTTCTTTACTTCACTGTGTCTCTGTGTCAGCACGAACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065291.2 ENSMUST00000215478.2 |
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| CDS-3UTR CCA 90 bp | TCAGGAGTTCAAGACCAGCCTTACCTACAAAGTAAGTTCAAGGCTCACCTATCCCTGAACGCCTGCGCCTaGATTCTGCCCAGCATGGAC | + |
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Preference number: 4 (lower is better) Translates to: SGVQDQPYLQSKFKAHLSLNACA*ILPSMD Trigger: GTCCATGCTGGGCAGAATCCAGGCGCAGGCGTTCAG...GGATAGGTGAGCCTTGAACTTACTTTGTAGGTAAGGCTGGTCTTGAACTCCTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS-3UTR CCA 90 bp | AACAGTATAATAGATGGCTTAAACAATCCTAAGCCATGTGCCCTACACCATAGCCCCAGCATGGACCACTaGCGGAGGCGGCTGGTGATC | + |
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Preference number: 4 (lower is better) Translates to: NSIIDGLNNPKPCALHHSPSMDH*RRRLVI Trigger: GATCACCAGCCGCCTCCGCCAGTGGTCCATGCTGGG...GCTATGGTGTAGGGCACATGGCTTAGGATTGTTTAAGCCATCTATTATACTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215478.2 |
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| CDS-3UTR GCA 90 bp | AACAGTATAATAGATGGCTTAAACAATCCTAAGCCATGTGCCCTACACCATAGCCCTGCGCCTGGATTCTaGCCAGCATGGACCACTGGC | + |
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Preference number: 4 (lower is better) Translates to: NSIIDGLNNPKPCALHHSPAPGF*PAWTTG Trigger: GCCAGTGGTCCATGCTGGGCAGAATCCAGGCGCAGG...GCTATGGTGTAGGGCACATGGCTTAGGATTGTTTAAGCCATCTATTATACTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215478.2 |
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| CDS-3UTR GCA 90 bp | AATGTTTCTATTCTAATCCAGAGACAATTAGCTTCTCAAAGGCCAGGCCTGGTGTCGAAGCTGAACGCCTaGGCCTGGATTCTGCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: NVSILIQRQLASQRPGLVSKLNA*AWILPS Trigger: GCTGGGCAGAATCCAGGCGCAGGCGTTCAGCTTCGA...CACCAGGCCTGGCCTTTGAGAAGCTAATTGTCTCTGGATTAGAATAGAAACATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS-3UTR TCA 90 bp | CTTTGGTGTTTGTTCTCTTCAGCTCAATATGGGCTCTTTACAGTGGCCTTTGATCTCATGCTCTTTAGGTaGAGGGTAGCACACACCAAC | + |
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Preference number: 4 (lower is better) Translates to: LWCLFSSAQYGLFTVAFDLMLFR*RVAHTN Trigger: GTTGGTGTGTGCTACCCTTCACCTAAAGAGCATGAG...ATCAAAGGCCACTGTAAAGAGCCCATATTGAGCTGAAGAGAACAAACACCAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS-3UTR TCA 90 bp | AATGTTTCTATTCTAATCCAGAGACAATTAGCTTCTCAAAGGCCAGGCCTGGTGTACAGGACATTCACATaGCGCTTGATGGGGTCCACA | + |
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Preference number: 4 (lower is better) Translates to: NVSILIQRQLASQRPGLVYRTFT*RLMGST Trigger: TGTGGACCCCATCAAGCGTCATGTGAATGTCCTGTA...CACCAGGCCTGGCCTTTGAGAAGCTAATTGTCTCTGGATTAGAATAGAAACATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| 3UTR CAA 72 bp | TCTCTTCAGCTCAATATGGGCTCTTTACAGTGGCCTTaGATTGGTCTGCAAAGAGCCCATAGATCTACCTGT | + |
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Preference number: 4 (lower is better) Translates to: SLQLNMGSLQWP*IGLQRAHRSTC Trigger: ACAGGTAGATCTATGGGCTCTTTGCAGACCAATCAAAGGCCACTGTAAAGAGCCCATATTGAGCTGAAGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS-3UTR CCA 90 bp | TCAGGAGTTCAAGACCAGCCTTACCTACAAAGTAAGTTCAAGGCTCACCTATCCCTTCAGATCCTAATGTaGTCCACTGTCCAGAAGAAT | + |
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Preference number: 4 (lower is better) Translates to: SGVQDQPYLQSKFKAHLSLQILM*STVQKN Trigger: ATTCTTCTGGACAGTGGACCACATTAGGATCTGAAG...GGATAGGTGAGCCTTGAACTTACTTTGTAGGTAAGGCTGGTCTTGAACTCCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS-3UTR GCA 90 bp | AATGTTTCTATTCTAATCCAGAGACAATTAGCTTCTCAAAGGCCAGGCCTGGTGCCTCCGAGGCAGAGATaGTTAAAAAGACAGAACAGA | + |
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Preference number: 4 (lower is better) Translates to: NVSILIQRQLASQRPGLVPPRQR*LKRQNR Trigger: TCTGTTCTGTCTTTTTAAGCATCTCTGCCTCGGAGG...CACCAGGCCTGGCCTTTGAGAAGCTAATTGTCTCTGGATTAGAATAGAAACATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS-3UTR CCA 90 bp | TCAGGAGTTCAAGACCAGCCTTACCTACAAAGTAAGTTCAAGGCTCACCTATCCCTCTTCCCTTTCCACTaGGCTAAAGACTTCATATTT | + |
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Preference number: 4 (lower is better) Translates to: SGVQDQPYLQSKFKAHLSLFPFH*AKDFIF Trigger: AAATATGAAGTCTTTAGCCCAGTGGAAAGGGAAGAG...GGATAGGTGAGCCTTGAACTTACTTTGTAGGTAAGGCTGGTCTTGAACTCCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| 3UTR CAA 72 bp | TATGCTGGGAAAATTGAGAAAAGGGCACTTTGGTGTTaGTTCTCTTCAGCTCAATATGGGCTCTTTACAGTG | + |
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Preference number: 4 (lower is better) Translates to: YAGKIEKRALWC*FSSAQYGLFTV Trigger: CACTGTAAAGAGCCCATATTGAGCTGAAGAGAACAAACACCAAAGTGCCCTTTTCTCAATTTTCCCAGCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS-3UTR TCA 90 bp | AATGTTTCTATTCTAATCCAGAGACAATTAGCTTCTCAAAGGCCAGGCCTGGTGAAGAATCTAGGCATTTaGCAATGTGTCCACTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: NVSILIQRQLASQRPGLVKNLGI*QCVHFL Trigger: GAGAAAGTGGACACATTGTCAAATGCCTAGATTCTT...CACCAGGCCTGGCCTTTGAGAAGCTAATTGTCTCTGGATTAGAATAGAAACATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS-3UTR CCA 90 bp | AAGAACAGTATAATAGATGGCTTAAACAATCCTAAGCCATGTGCCCTACACCATAACAGAGTCCTAATGTaGTCCACTGTCCAGAAGAAT | + |
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Preference number: 4 (lower is better) Translates to: KNSIIDGLNNPKPCALHHNRVLM*STVQKN Trigger: ATTCTTCTGGACAGTGGACCACATTAGGACTCTGTT...ATGGTGTAGGGCACATGGCTTAGGATTGTTTAAGCCATCTATTATACTGTTCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215478.2 |
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| CDS TCA 90 bp | ATCAGCTTAGCTGTCTCCAGATATGGCTTTAGCACATCTTCATACTaGCAAAGGGACCCTCCGAGGCAGAGATGCTTAAAAAGACAGAAC | + |
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Preference number: 5 (lower is better) Translates to: ISLAVSRYGFSTSSY*QRDPPRQRCLKRQN Trigger: GTTCTGTCTTTTTAAGCATCTCTGCCTCGGAGGGTCCCTTTGTCAGTATGAAGATGTGCTAAAGCCATATCTGGAGACAGCTAAGCTGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS-3UTR CAA 90 bp | GCCAGGCCTGGTGGTCCATGTTTGTATTACAATGCTCAAAAGGTAGAGGCACGAGTTGGAAAAATGACATaGAAAGTTGTGTGCATGGAA | + |
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Preference number: 5 (lower is better) Translates to: ARPGGPCLYYNAQKVEARVGKMT*KVVCME Trigger: TTCCATGCACACAACTTTCAATGTCATTTTTCCAAC...TCGTGCCTCTACCTTTTGAGCATTGTAATACAAACATGGACCACCAGGCCTGGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS-3UTR CAA 90 bp | AATGTTTCTATTCTAATCCAGAGACAATTAGCTTCTCAAAGGCCAGGCCTGGTGGACAGAAGAGGTAATTaGTATTTCCTTGGTTCGAGG | + |
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Preference number: 5 (lower is better) Translates to: NVSILIQRQLASQRPGLVDRRGN*YFLGSR Trigger: CCTCGAACCAAGGAAATACAAATTACCTCTTCTGTC...CACCAGGCCTGGCCTTTGAGAAGCTAATTGTCTCTGGATTAGAATAGAAACATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS-3UTR CAA 90 bp | CTTTGGTGTTTGTTCTCTTCAGCTCAATATGGGCTCTTTACAGTGGCCTTTGATAAAGAATCTAGGCATTaGACAATGTGTCCACTTTCT | + |
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Preference number: 5 (lower is better) Translates to: LWCLFSSAQYGLFTVAFDKESRH*TMCPLS Trigger: AGAAAGTGGACACATTGTCAAATGCCTAGATTCTTT...ATCAAAGGCCACTGTAAAGAGCCCATATTGAGCTGAAGAGAACAAACACCAAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS-3UTR CAA 90 bp | TACCTGTTCGTGCTGACACAGAGACACAGTGAAGTAAAGAACAGTATAATAGATGTAATTTGTATTTCCTaGGTTCGAGGATGTTTCCGA | + |
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Preference number: 5 (lower is better) Translates to: YLFVLTQRHSEVKNSIIDVICIS*VRGCFR Trigger: TCGGAAACATCCTCGAACCAAGGAAATACAAATTAC...ATCTATTATACTGTTCTTTACTTCACTGTGTCTCTGTGTCAGCACGAACAGGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS CCA 72 bp | GGCTGGAACGTCTGGTCGAAGCTGAACGCCTGCGCCTaGATTCTGCCCAGCATGGACCACTGGCGGAGGCGG | + |
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Preference number: 6 (lower is better) Translates to: GWNVWSKLNACA*ILPSMDHWRRR Trigger: CCGCCTCCGCCAGTGGTCCATGCTGGGCAGAATCCAGGCGCAGGCGTTCAGCTTCGACCAGACGTTCCAGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065291.2 ENSMUST00000215478.2 |
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| CDS TCA 72 bp | TTCTGCCCAGCATGGACCACTGGCGGAGGCGGCTGGTaGTCTCCCGGGCGCTCAGCGACGAGAAGGTTCTAT | + |
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Preference number: 6 (lower is better) Translates to: FCPAWTTGGGGW*SPGRSATRRFY Trigger: ATAGAACCTTCTCGTCGCTGAGCGCCCGGGAGATCACCAGCCGCCTCCGCCAGTGGTCCATGCTGGGCAGAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065291.2 ENSMUST00000215478.2 |
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| CDS TCA 72 bp | CGCTCAGCGACGAGAAGGTTCTATGAGGCAGGAATCTaGAGTAGTAGCCGCCTCCATCCCGTGGCTCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: RSATRRFYEAGI*SSSRLHPVAPQ Trigger: CTGGGGAGCCACGGGATGGAGGCGGCTACTACTTCAGATTCCTGCCTCATAGAACCTTCTCGTCGCTGAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065291.2 ENSMUST00000215478.2 |
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| CDS TCA 72 bp | CATCCTTTTGGTAGGGCTGGAACGTCTGGTCGAAGCTaGACGCCTGCGCCTGGATTCTGCCCAGCATGGACC | + |
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Preference number: 6 (lower is better) Translates to: HPFGRAGTSGRS*TPAPGFCPAWT Trigger: GGTCCATGCTGGGCAGAATCCAGGCGCAGGCGTTCAGCTTCGACCAGACGTTCCAGCCCTACCAAAAGGATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065291.2 ENSMUST00000215478.2 |
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| CDS TCA 72 bp | GCTGTCTCCAGATATGGCTTTAGCACATCTTCATACTaGCAAAGGGACCCTCCGAGGCAGAGATGCTTAAAA | + |
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Preference number: 6 (lower is better) Translates to: AVSRYGFSTSSY*QRDPPRQRCLK Trigger: TTTTAAGCATCTCTGCCTCGGAGGGTCCCTTTGTCAGTATGAAGATGTGCTAAAGCCATATCTGGAGACAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS TCA 72 bp | AACAAAATACGAGAATGTCTGCTCATGCTCTTTAGGTaGAGGGTAGCACACACCAACAGAGTCGTAGGCTTT | + |
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Preference number: 6 (lower is better) Translates to: NKIRECLLMLFR*RVAHTNRVVGF Trigger: AAAGCCTACGACTCTGTTGGTGTGTGCTACCCTTCACCTAAAGAGCATGAGCAGACATTCTCGTATTTTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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| CDS CAA 90 bp | ACCAACAGAGTCGTAGGCTTTTACTTTAAAGACAGAAGAGGTAATTaGTATTTCCTTGGTTCGAGGATGTTTCCGAACACTCACCAGATC | + |
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Preference number: 6 (lower is better) Translates to: TNRVVGFYFKDRRGN*YFLGSRMFPNTHQI Trigger: GATCTGGTGAGTGTTCGGAAACATCCTCGAACCAAGGAAATACAAATTACCTCTTCTGTCTTTAAAGTAAAAGCCTACGACTCTGTTGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065291.2 |
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