Pregenerated sensors for CFAP299 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057816Ensembl transcript IDs: ENSMUST00000080333.8, ENSMUST00000196339.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGACGTGGTCAAAGAGAACCACATGTGCGTAGAGATCCGTCTGGATaGGGATCCTGGTGGAGTTGTCACCTGGATGAGCCTTTGGGTCCA | + |
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Preference number: 1 (lower is better) Translates to: RRGQREPHVRRDPSG*GSWWSCHLDEPLGP Trigger: TGGACCCAAAGGCTCATCCAGGTGACAACTCCACCAGGATCCCCATCCAGACGGATCTCTACGCACATGTGGTTCTCTTTGACCACGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| 3UTR CCA 90 bp | AACAATAAGGAAACCATTTACTGTGTGGTGCTTAAGTCTTCCTTCTaGAGACGTGGTCAAAGAGAACCACATGTGCGTAGAGATCCGTCT | + |
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Preference number: 1 (lower is better) Translates to: NNKETIYCVVLKSSF*RRGQREPHVRRDPS Trigger: AGACGGATCTCTACGCACATGTGGTTCTCTTTGACCACGTCTCCAGAAGGAAGACTTAAGCACCACACAGTAAATGGTTTCCTTATTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| 3UTR-3UTR CCA 90 bp | GTGTGGTGCTTAAGTCTTCCTTCTGGAGACGTGGTCAAAGAGAACCACATGTGCTCTGGATGGGGATCCTaGTGGAGTTGTCACCTGGAT | + |
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Preference number: 2 (lower is better) Translates to: VWCLSLPSGDVVKENHMCSGWGS*WSCHLD Trigger: ATCCAGGTGACAACTCCACCAGGATCCCCATCCAGA...GCACATGTGGTTCTCTTTGACCACGTCTCCAGAAGGAAGACTTAAGCACCACAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| 3UTR-3UTR CCA 90 bp | TTTACTGTGTGGTGCTTAAGTCTTCCTTCTGGAGACGTGGTCAAAGAGAACCACAGAGATCCGTCTGGATaGGGATCCTGGTGGAGTTGT | + |
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Preference number: 2 (lower is better) Translates to: FTVWCLSLPSGDVVKENHRDPSG*GSWWSC Trigger: ACAACTCCACCAGGATCCCCATCCAGACGGATCTCT...GTGGTTCTCTTTGACCACGTCTCCAGAAGGAAGACTTAAGCACCACACAGTAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| 3UTR-3UTR TCA 90 bp | ACCATTTACTGTGTGGTGCTTAAGTCTTCCTTCTGGAGACGTGGTCAAAGAGAAGACACTTCCTGCCCATaGGGATTTCTGTCCCGAATG | + |
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Preference number: 2 (lower is better) Translates to: TIYCVVLKSSFWRRGQREDTSCP*GFLSRM Trigger: CATTCGGGACAGAAATCCTCATGGGCAGGAAGTGTC...TTCTCTTTGACCACGTCTCCAGAAGGAAGACTTAAGCACCACACAGTAAATGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| 3UTR-3UTR CCA 90 bp | GTGTGGTGCTTAAGTCTTCCTTCTGGAGACGTGGTCAAAGAGAACCACATGTGCAAAAGCTCATGTCTGTaGTCCTTGGAAGAAGTCTTC | + |
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Preference number: 2 (lower is better) Translates to: VWCLSLPSGDVVKENHMCKSSCL*SLEEVF Trigger: GAAGACTTCTTCCAAGGACCACAGACATGAGCTTTT...GCACATGTGGTTCTCTTTGACCACGTCTCCAGAAGGAAGACTTAAGCACCACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| 3UTR CAA 90 bp | AAAGTAAGCCTTCAGGGTTGTCAGCAATCACTTGATAATTTGGACTaGAATTGCAAACAGCAATATGGCTGTCCCAGTTGTAAAAGCTCA | + |
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Preference number: 2 (lower is better) Translates to: KVSLQGCQQSLDNLD*NCKQQYGCPSCKSS Trigger: TGAGCTTTTACAACTGGGACAGCCATATTGCTGTTTGCAATTCAAGTCCAAATTATCAAGTGATTGCTGACAACCCTGAAGGCTTACTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| 3UTR CCA 72 bp | CCACATGTGCGTAGAGATCCGTCTGGATGGGGATCCTaGTGGAGTTGTCACCTGGATGAGCCTTTGGGTCCA | + |
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Preference number: 3 (lower is better) Translates to: PHVRRDPSGWGS*WSCHLDEPLGP Trigger: TGGACCCAAAGGCTCATCCAGGTGACAACTCCACCAGGATCCCCATCCAGACGGATCTCTACGCACATGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| 3UTR CCA 72 bp | CATGTGCGTAGAGATCCGTCTGGATGGGGATCCTGGTaGAGTTGTCACCTGGATGAGCCTTTGGGTCCACAT | + |
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Preference number: 3 (lower is better) Translates to: HVRRDPSGWGSW*SCHLDEPLGPH Trigger: ATGTGGACCCAAAGGCTCATCCAGGTGACAACTCCACCAGGATCCCCATCCAGACGGATCTCTACGCACATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| 3UTR CCA 72 bp | GGGGATCCTGGTGGAGTTGTCACCTGGATGAGCCTTTaGGTCCACATTGAGAATTTTTCTGTCCCTCTTATA | + |
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Preference number: 3 (lower is better) Translates to: GDPGGVVTWMSL*VHIENFSVPLI Trigger: TATAAGAGGGACAGAAAAATTCTCAATGTGGACCCAAAGGCTCATCCAGGTGACAACTCCACCAGGATCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| 3UTR TCA 72 bp | GGCAAATCAGTGCAGTCTTCCTTGATTAAAAGTTGCTaGATCATCTTACACGTGAGCAAGCCCTTTGCTCCG | + |
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Preference number: 3 (lower is better) Translates to: GKSVQSSLIKSC*IILHVSKPFAP Trigger: CGGAGCAAAGGGCTTGCTCACGTGTAAGATGATTCAGCAACTTTTAATCAAGGAAGACTGCACTGATTTGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| 3UTR CCA 72 bp | GAAACCATTTACTGTGTGGTGCTTAAGTCTTCCTTCTaGAGACGTGGTCAAAGAGAACCACATGTGCGTAGA | + |
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Preference number: 3 (lower is better) Translates to: ETIYCVVLKSSF*RRGQREPHVRR Trigger: TCTACGCACATGTGGTTCTCTTTGACCACGTCTCCAGAAGGAAGACTTAAGCACCACACAGTAAATGGTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| 3UTR TCA 72 bp | TTCAGGGTTGTCAGCAATCACTTGATAATTTGGACTTaGATTGCAAACAGCAATATGGCTGTCCCAGTTGTA | + |
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Preference number: 3 (lower is better) Translates to: FRVVSNHLIIWT*IANSNMAVPVV Trigger: TACAACTGGGACAGCCATATTGCTGTTTGCAATTCAAGTCCAAATTATCAAGTGATTGCTGACAACCCTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| CDS-3UTR TCA 90 bp | TCTTCCTTCTGGAGACGTGGTCAAAGAGAACCACATGTGCGTAGAGATCCGTCTTCGACCGTAGTGATCTaGGAGTCCAGGAAGTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: SSFWRRGQREPHVRRDPSSTVVI*ESRKSS Trigger: TGAAGACTTCCTGGACTCTCAGATCACTACGGTCGA...AGACGGATCTCTACGCACATGTGGTTCTCTTTGACCACGTCTCCAGAAGGAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| CDS-3UTR CCA 90 bp | AAACCATTTACTGTGTGGTGCTTAAGTCTTCCTTCTGGAGACGTGGTCAAAGAGCCTAGCTCCACCAACTaGCGAGCCAGGCTTTCATCC | + |
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Preference number: 4 (lower is better) Translates to: KPFTVWCLSLPSGDVVKEPSSTN*RARLSS Trigger: GGATGAAAGCCTGGCTCGCCAGTTGGTGGAGCTAGG...CTCTTTGACCACGTCTCCAGAAGGAAGACTTAAGCACCACACAGTAAATGGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| CDS-3UTR GCA 90 bp | TGCTTAAGTCTTCCTTCTGGAGACGTGGTCAAAGAGAACCACATGTGCGTAGAGGTCAGTGTCTTTTTCTaGGTTCTTTCAGCCTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: CLSLPSGDVVKENHMCVEVSVFF*VLSACL Trigger: AAGACAGGCTGAAAGAACGCAGAAAAAGACACTGAC...CTCTACGCACATGTGGTTCTCTTTGACCACGTCTCCAGAAGGAAGACTTAAGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| CDS-3UTR GCA 90 bp | TGCTTAAGTCTTCCTTCTGGAGACGTGGTCAAAGAGAACCACATGTGCGTAGAGTCTTTCAGCCTGTCTTaGAATATTGATAGCTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: CLSLPSGDVVKENHMCVESFSLS*NIDSCL Trigger: AAGGCAGCTATCAATATTGCAAGACAGGCTGAAAGA...CTCTACGCACATGTGGTTCTCTTTGACCACGTCTCCAGAAGGAAGACTTAAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| CDS-3UTR CCA 90 bp | TTTGCTTCTGACCAAGGAATTCATTTGAATGTAGCGAACAATAAGGAAACCATTCCTAGCTCCACCAACTaGCGAGCCAGGCTTTCATCC | + |
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Preference number: 4 (lower is better) Translates to: FASDQGIHLNVANNKETIPSSTN*RARLSS Trigger: GGATGAAAGCCTGGCTCGCCAGTTGGTGGAGCTAGG...AATGGTTTCCTTATTGTTCGCTACATTCAAATGAATTCCTTGGTCAGAAGCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080333.8 ENSMUST00000196339.2 |
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| CDS-3UTR CCA 90 bp | TTTGCTTCTGACCAAGGAATTCATTTGAATGTAGCGAACAATAAGGAAACCATTGGATGGGGATCCTGGTaGAGTTGTCACCTGGATGAG | + |
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Preference number: 4 (lower is better) Translates to: FASDQGIHLNVANNKETIGWGSW*SCHLDE Trigger: CTCATCCAGGTGACAACTCCACCAGGATCCCCATCC...AATGGTTTCCTTATTGTTCGCTACATTCAAATGAATTCCTTGGTCAGAAGCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080333.8 |
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| 3UTR CAA 72 bp | GTAAGCCTTCAGGGTTGTCAGCAATCACTTGATAATTaGGACTTGAATTGCAAACAGCAATATGGCTGTCCC | + |
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Preference number: 4 (lower is better) Translates to: VSLQGCQQSLDN*DLNCKQQYGCP Trigger: GGGACAGCCATATTGCTGTTTGCAATTCAAGTCCAAATTATCAAGTGATTGCTGACAACCCTGAAGGCTTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| CDS-3UTR TCA 90 bp | TTTGCTTCTGACCAAGGAATTCATTTGAATGTAGCGAACAATAAGGAAACCATTGACACTTCCTGCCCATaGGGATTTCTGTCCCGAATG | + |
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Preference number: 4 (lower is better) Translates to: FASDQGIHLNVANNKETIDTSCP*GFLSRM Trigger: CATTCGGGACAGAAATCCTCATGGGCAGGAAGTGTC...AATGGTTTCCTTATTGTTCGCTACATTCAAATGAATTCCTTGGTCAGAAGCAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080333.8 |
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| CDS-3UTR CCA 90 bp | TTTGCTTCTGACCAAGGAATTCATTTGAATGTAGCGAACAATAAGGAAACCATTTCTGGATGGGGATCCTaGTGGAGTTGTCACCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: FASDQGIHLNVANNKETISGWGS*WSCHLD Trigger: ATCCAGGTGACAACTCCACCAGGATCCCCATCCAGA...AATGGTTTCCTTATTGTTCGCTACATTCAAATGAATTCCTTGGTCAGAAGCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080333.8 |
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| CDS-3UTR CCA 90 bp | TTTGCTTCTGACCAAGGAATTCATTTGAATGTAGCGAACAATAAGGAAACCATTAGAGATCCGTCTGGATaGGGATCCTGGTGGAGTTGT | + |
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Preference number: 4 (lower is better) Translates to: FASDQGIHLNVANNKETIRDPSG*GSWWSC Trigger: ACAACTCCACCAGGATCCCCATCCAGACGGATCTCT...AATGGTTTCCTTATTGTTCGCTACATTCAAATGAATTCCTTGGTCAGAAGCAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080333.8 |
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| 3UTR CAA 72 bp | CTTCAGGGTTGTCAGCAATCACTTGATAATTTGGACTaGAATTGCAAACAGCAATATGGCTGTCCCAGTTGT | + |
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Preference number: 4 (lower is better) Translates to: LQGCQQSLDNLD*NCKQQYGCPSC Trigger: ACAACTGGGACAGCCATATTGCTGTTTGCAATTCAAGTCCAAATTATCAAGTGATTGCTGACAACCCTGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196339.2 |
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| CDS-3UTR TCA 90 bp | TTTGCTTCTGACCAAGGAATTCATTTGAATGTAGCGAACAATAAGGAAACCATTTCGACCGTAGTGATCTaGGAGTCCAGGAAGTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: FASDQGIHLNVANNKETISTVVI*ESRKSS Trigger: TGAAGACTTCCTGGACTCTCAGATCACTACGGTCGA...AATGGTTTCCTTATTGTTCGCTACATTCAAATGAATTCCTTGGTCAGAAGCAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080333.8 ENSMUST00000196339.2 |
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| CDS-3UTR CCA 90 bp | TTTGCTTCTGACCAAGGAATTCATTTGAATGTAGCGAACAATAAGGAAACCATTTTCCTTCTGGAGACGTaGTCAAAGAGAACCACATGT | + |
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Preference number: 4 (lower is better) Translates to: FASDQGIHLNVANNKETIFLLET*SKRTTC Trigger: ACATGTGGTTCTCTTTGACCACGTCTCCAGAAGGAA...AATGGTTTCCTTATTGTTCGCTACATTCAAATGAATTCCTTGGTCAGAAGCAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080333.8 |
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| CDS-3UTR GCA 90 bp | TTTGCTTCTGACCAAGGAATTCATTTGAATGTAGCGAACAATAAGGAAACCATTGTCAGTGTCTTTTTCTaGGTTCTTTCAGCCTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: FASDQGIHLNVANNKETIVSVFF*VLSACL Trigger: AAGACAGGCTGAAAGAACGCAGAAAAAGACACTGAC...AATGGTTTCCTTATTGTTCGCTACATTCAAATGAATTCCTTGGTCAGAAGCAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000080333.8 ENSMUST00000196339.2 |
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| CDS-3UTR CCA 90 bp | TTTGCTTCTGACCAAGGAATTCATTTGAATGTAGCGAACAATAAGGAAACCATTAAAAGCTCATGTCTGTaGTCCTTGGAAGAAGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: FASDQGIHLNVANNKETIKSSCL*SLEEVF Trigger: GAAGACTTCTTCCAAGGACCACAGACATGAGCTTTT...AATGGTTTCCTTATTGTTCGCTACATTCAAATGAATTCCTTGGTCAGAAGCAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080333.8 |
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| CDS-3UTR GCA 90 bp | TTTGCTTCTGACCAAGGAATTCATTTGAATGTAGCGAACAATAAGGAAACCATTTCTTTCAGCCTGTCTTaGAATATTGATAGCTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: FASDQGIHLNVANNKETISFSLS*NIDSCL Trigger: AAGGCAGCTATCAATATTGCAAGACAGGCTGAAAGA...AATGGTTTCCTTATTGTTCGCTACATTCAAATGAATTCCTTGGTCAGAAGCAAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080333.8 ENSMUST00000196339.2 |
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| CDS TCA 90 bp | CAATATATCCTGACACTTCCTGCCCATGAGGATTTCTGTCCCGAATaGAGATCACTGTGCTCAGTTTCCCAGCACGATTATCCTCTTCCC | + |
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Preference number: 5 (lower is better) Translates to: QYILTLPAHEDFCPE*RSLCSVSQHDYPLP Trigger: GGGAAGAGGATAATCGTGCTGGGAAACTGAGCACAGTGATCTTCATTCGGGACAGAAATCCTCATGGGCAGGAAGTGTCAGGATATATTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080333.8 |
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| CDS GCA 90 bp | TGTCTTTTTCTGCGTTCTTTCAGCCTGTCTTGCAATATTGATAGCTaGCTTTCTCGCTTCGAAATCTTCCCTTTTCACGATTTCTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: CLFLRSFSLSCNIDS*LSRFEIFPFHDFSC Trigger: ACAGGAGAAATCGTGAAAAGGGAAGATTTCGAAGCGAGAAAGGCAGCTATCAATATTGCAAGACAGGCTGAAAGAACGCAGAAAAAGACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080333.8 ENSMUST00000196339.2 |
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| CDS-3UTR CAA 90 bp | TTTGCTTCTGACCAAGGAATTCATTTGAATGTAGCGAACAATAAGGAAACCATTGCCTTTGGGTCCACATaGAGAATTTTTCTGTCCCTC | + |
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Preference number: 5 (lower is better) Translates to: FASDQGIHLNVANNKETIAFGST*RIFLSL Trigger: GAGGGACAGAAAAATTCTCAATGTGGACCCAAAGGC...AATGGTTTCCTTATTGTTCGCTACATTCAAATGAATTCCTTGGTCAGAAGCAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080333.8 |
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| CDS-3UTR CAA 90 bp | TTTGCTTCTGACCAAGGAATTCATTTGAATGTAGCGAACAATAAGGAAACCATTTCATGTCTGTGGTCCTaGGAAGAAGTCTTCTTTTCC | + |
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Preference number: 5 (lower is better) Translates to: FASDQGIHLNVANNKETISCLWS*EEVFFS Trigger: GGAAAAGAAGACTTCTTCCAAGGACCACAGACATGA...AATGGTTTCCTTATTGTTCGCTACATTCAAATGAATTCCTTGGTCAGAAGCAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080333.8 |
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| CDS GCA 72 bp | TCTTCCCTCATCGCCAGGGCTTTCAGGAAATCATCATaGAGCTCCTTCCCCGCGCTTGTCAGTGTCTTTTTC | + |
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Preference number: 6 (lower is better) Translates to: SSLIARAFRKSS*SSFPALVSVFF Trigger: GAAAAAGACACTGACAAGCGCGGGGAAGGAGCTGCATGATGATTTCCTGAAAGCCCTGGCGATGAGGGAAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080333.8 ENSMUST00000196339.2 |
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| CDS CAA 72 bp | CTTTCAGGAAATCATCATGCAGCTCCTTCCCCGCGCTaGTCAGTGTCTTTTTCTGCGTTCTTTCAGCCTGTC | + |
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Preference number: 6 (lower is better) Translates to: LSGNHHAAPSPR*SVSFSAFFQPV Trigger: GACAGGCTGAAAGAACGCAGAAAAAGACACTGACAAGCGCGGGGAAGGAGCTGCATGATGATTTCCTGAAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080333.8 ENSMUST00000196339.2 |
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| CDS TCA 72 bp | CTGACACTTCCTGCCCATGAGGATTTCTGTCCCGAATaGAGATCACTGTGCTCAGTTTCCCAGCACGATTAT | + |
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Preference number: 6 (lower is better) Translates to: LTLPAHEDFCPE*RSLCSVSQHDY Trigger: ATAATCGTGCTGGGAAACTGAGCACAGTGATCTTCATTCGGGACAGAAATCCTCATGGGCAGGAAGTGTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080333.8 |
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| CDS GCA 72 bp | TGCAGCTCCTTCCCCGCGCTTGTCAGTGTCTTTTTCTaGGTTCTTTCAGCCTGTCTTGCAATATTGATAGCT | + |
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Preference number: 6 (lower is better) Translates to: CSSFPALVSVFF*VLSACLAILIA Trigger: AGCTATCAATATTGCAAGACAGGCTGAAAGAACGCAGAAAAAGACACTGACAAGCGCGGGGAAGGAGCTGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080333.8 ENSMUST00000196339.2 |
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| CDS GCA 72 bp | CTGCGTTCTTTCAGCCTGTCTTGCAATATTGATAGCTaGCTTTCTCGCTTCGAAATCTTCCCTTTTCACGAT | + |
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Preference number: 6 (lower is better) Translates to: LRSFSLSCNIDS*LSRFEIFPFHD Trigger: ATCGTGAAAAGGGAAGATTTCGAAGCGAGAAAGGCAGCTATCAATATTGCAAGACAGGCTGAAAGAACGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080333.8 ENSMUST00000196339.2 |
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| CDS GCA 72 bp | TGTCAGTGTCTTTTTCTGCGTTCTTTCAGCCTGTCTTaGAATATTGATAGCTGCCTTTCTCGCTTCGAAATC | + |
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Preference number: 6 (lower is better) Translates to: CQCLFLRSFSLS*NIDSCLSRFEI Trigger: GATTTCGAAGCGAGAAAGGCAGCTATCAATATTGCAAGACAGGCTGAAAGAACGCAGAAAAAGACACTGACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000080333.8 ENSMUST00000196339.2 |
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| CDS CAA 90 bp | CTTGTCAGTGTCTTTTTCTGCGTTCTTTCAGCCTGTCTTGCAATATaGATAGCTGCCTTTCTCGCTTCGAAATCTTCCCTTTTCACGATT | + |
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Preference number: 6 (lower is better) Translates to: LVSVFFCVLSACLAI*IAAFLASKSSLFTI Trigger: AATCGTGAAAAGGGAAGATTTCGAAGCGAGAAAGGCAGCTATCAATATTGCAAGACAGGCTGAAAGAACGCAGAAAAAGACACTGACAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080333.8 ENSMUST00000196339.2 |
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