Pregenerated sensors for CFAP298 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022972Ensembl transcript IDs: ENSMUST00000023694.11, ENSMUST00000125519.8, ENSMUST00000129345.8, ENSMUST00000142340.2, ENSMUST00000149833.8
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | TGTTCTTCTCAGCTCCTTGGCGGCCCACCACAGCTGTaGCTCCGACTCCTGGATGACTTCGAGGGCTGCCTG | + |
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Preference number: 3 (lower is better) Translates to: CSSQLLGGPPQL*LRLLDDFEGCL Trigger: CAGGCAGCCCTCGAAGTCATCCAGGAGTCGGAGGCACAGCTGTGGTGGGCCGCCAAGGAGCTGAGAAGAACA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125519.8 |
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| 3UTR TCA 72 bp | TGGCGGCCCACCACAGCTGTGCCTCCGACTCCTGGATaGCTTCGAGGGCTGCCTGAGTTCCTGACAAATCTT | + |
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Preference number: 3 (lower is better) Translates to: WRPTTAVPPTPG*LRGLPEFLTNL Trigger: AAGATTTGTCAGGAACTCAGGCAGCCCTCGAAGTCATCCAGGAGTCGGAGGCACAGCTGTGGTGGGCCGCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125519.8 |
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| 3UTR GCA 72 bp | TCACTGCTGATGACAGGCTCCCGGGCTGGGGCACCCTaGCCTCTCTGCTGGATCTTGACGATGATTTTGGTT | + |
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Preference number: 3 (lower is better) Translates to: SLLMTGSRAGAP*PLCWILTMILV Trigger: AACCAAAATCATCGTCAAGATCCAGCAGAGAGGGCAGGGTGCCCCAGCCCGGGAGCCTGTCATCAGCAGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125519.8 |
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| 3UTR CCA 72 bp | CATAGTCAGAAAGCTTCTTTGTTCTTCTCAGCTCCTTaGCGGCCCACCACAGCTGTGCCTCCGACTCCTGGA | + |
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Preference number: 3 (lower is better) Translates to: HSQKASLFFSAP*RPTTAVPPTPG Trigger: TCCAGGAGTCGGAGGCACAGCTGTGGTGGGCCGCCAAGGAGCTGAGAAGAACAAAGAAGCTTTCTGACTATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125519.8 |
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| 3UTR TCA 72 bp | CTTCACCTGGGCCGCCACTTTATGTCTTTTACGCCATaGAAATGTCTTTTCAAAGCCGTGTTGTCAGCCCAC | + |
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Preference number: 3 (lower is better) Translates to: LHLGRHFMSFTP*KCLFKAVLSAH Trigger: GTGGGCTGACAACACGGCTTTGAAAAGACATTTTCATGGCGTAAAAGACATAAAGTGGCGGCCCAGGTGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125519.8 |
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| 3UTR-3UTR CAA 90 bp | CTGTCTTCTGTGGTAGAACAGCATCAGCTGCTTGTGTTCTTCACTGCTGATGACATCTTGACGATGATTTaGGTTTTCTCATTTTTCCCC | + |
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Preference number: 3 (lower is better) Translates to: LSSVVEQHQLLVFFTADDILTMI*VFSFFP Trigger: GGGGAAAAATGAGAAAACCAAAATCATCGTCAAGAT...GTCATCAGCAGTGAAGAACACAAGCAGCTGATGCTGTTCTACCACAGAAGACAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000125519.8 |
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| CDS-3UTR GCA 90 bp | AAGCCGTGTTGTCAGCCCACGGGGAGTTCAGACAGGAGTCATCGTCATTCTCTTGCTCTTCCAGCTCCGTaGTCCCGGGCGCCTGCAGTA | + |
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Preference number: 4 (lower is better) Translates to: KPCCQPTGSSDRSHRHSLALPAP*SRAPAV Trigger: TACTGCAGGCGCCCGGGAGCACGGAGCTGGAAGAGC...AAGAGAATGACGATGACTCCTGTCTGAACTCCCCGTGGGCTGACAACACGGCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125519.8 |
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| CDS-3UTR TCA 90 bp | GGCACCCTGCCCTCTCTGCTGGATCTTGACGATGATTTTGGTTTTCTCATTTTTGGGCCACCTGCGCCGTaGGCTCTTCCAGCTCCGTGC | + |
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Preference number: 4 (lower is better) Translates to: GTLPSLLDLDDDFGFLIFGPPAP*ALPAPC Trigger: GCACGGAGCTGGAAGAGCTCACGGCGCAGGTGGCCC...AAAAATGAGAAAACCAAAATCATCGTCAAGATCCAGCAGAGAGGGCAGGGTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000125519.8 |
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| CDS-3UTR TCA 90 bp | AAAGCCGTGTTGTCAGCCCACGGGGAGTTCAGACAGGAGTCATCGTCATTCTCTTGGGATAAACGATCATaGCCGCACCTCGAAGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: KAVLSAHGEFRQESSSFSWDKRS*PHLEAG Trigger: ACCAGCTTCGAGGTGCGGTCATGATCGTTTATCCCA...AGAGAATGACGATGACTCCTGTCTGAACTCCCCGTGGGCTGACAACACGGCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125519.8 |
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| CDS-3UTR GCA 90 bp | GAAAGCTTCTTTGTTCTTCTCAGCTCCTTGGCGGCCCACCACAGCTGTGCCTCCTCATCAGTCAGCCCTTaGATATTAGGGGGCAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: ESFFVLLSSLAAHHSCASSSVSP*ILGGRK Trigger: CTTTCTGCCCCCTAATATGCAAGGGCTGACTGATGA...GGAGGCACAGCTGTGGTGGGCCGCCAAGGAGCTGAGAAGAACAAAGAAGCTTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000125519.8 |
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| CDS-3UTR CCA 90 bp | CACATAGTCAGAAAGCTTCTTTGTTCTTCTCAGCTCCTTGGCGGCCCACCACAGACCGCACCTCGAAGCTaGTCCAAGGCATCTTTCACC | + |
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Preference number: 4 (lower is better) Translates to: HIVRKLLCSSQLLGGPPQTAPRS*SKASFT Trigger: GGTGAAAGATGCCTTGGACCAGCTTCGAGGTGCGGT...CTGTGGTGGGCCGCCAAGGAGCTGAGAAGAACAAAGAAGCTTTCTGACTATGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125519.8 |
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| CDS-3UTR CCA 90 bp | TTTTCCCCACATAGTCAGAAAGCTTCTTTGTTCTTCTCAGCTCCTTGGCGGCCCGCCTGCAGTAAGAACTaGCTCTCGTCGCCTCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: FSPHSQKASLFFSAPWRPACSKN*LSSPLF Trigger: GAAGAGAGGCGACGAGAGCCAGTTCTTACTGCAGGC...GGGCCGCCAAGGAGCTGAGAAGAACAAAGAAGCTTTCTGACTATGTGGGGAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125519.8 |
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| CDS TCA 90 bp | GGTGCACCTTCAGCCGCCCGTTGTAGACGCGGGCCACCTGCGCCGTaGGCTCTTCCAGCTCCGTGCTCCCGGGCGCCTGCAGTAAGAACT | + |
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Preference number: 5 (lower is better) Translates to: GAPSAARCRRGPPAP*ALPAPCSRAPAVRT Trigger: AGTTCTTACTGCAGGCGCCCGGGAGCACGGAGCTGGAAGAGCTCACGGCGCAGGTGGCCCGCGTCTACAACGGGCGGCTGAAGGTGCACC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023694.11 ENSMUST00000125519.8 ENSMUST00000149833.8 |
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| CDS TCA 90 bp | TCAGCTCCTTGGCGGCCCACCACAGCTGTGCCTCCGACTCCTGGATaGCTTCGAGGGCTGCCTGAGTTCCTGACAAATCTTCTTTATTTT | + |
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Preference number: 5 (lower is better) Translates to: SAPWRPTTAVPPTPG*LRGLPEFLTNLLYF Trigger: AAAATAAAGAAGATTTGTCAGGAACTCAGGCAGCCCTCGAAGTCATCCAGGAGTCGGAGGCACAGCTGTGGTGGGCCGCCAAGGAGCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023694.11 ENSMUST00000129345.8 ENSMUST00000149833.8 |
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| CDS TCA 90 bp | CTGTGCCTCCGACTCCTGGATGACTTCGAGGGCTGCCTGAGTTCCTaGCAAATCTTCTTTATTTTCAAATTCCATCCGGATAGGATCGTA | + |
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Preference number: 5 (lower is better) Translates to: LCLRLLDDFEGCLSS*QIFFIFKFHPDRIV Trigger: TACGATCCTATCCGGATGGAATTTGAAAATAAAGAAGATTTGTCAGGAACTCAGGCAGCCCTCGAAGTCATCCAGGAGTCGGAGGCACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023694.11 ENSMUST00000129345.8 ENSMUST00000142340.2 ENSMUST00000149833.8 |
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| CDS CCA 90 bp | CAAATCTTCTTTATTTTCAAATTCCATCCGGATAGGATCGTATGGTaGCAGCCCCATGGGATAAACGATCATGACCGCACCTCGAAGCTG | + |
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Preference number: 5 (lower is better) Translates to: QIFFIFKFHPDRIVW*QPHGINDHDRTSKL Trigger: CAGCTTCGAGGTGCGGTCATGATCGTTTATCCCATGGGGCTGCCACCATACGATCCTATCCGGATGGAATTTGAAAATAAAGAAGATTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023694.11 ENSMUST00000129345.8 ENSMUST00000142340.2 ENSMUST00000149833.8 |
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| CDS TCA 72 bp | TCAGCCGCCCGTTGTAGACGCGGGCCACCTGCGCCGTaGGCTCTTCCAGCTCCGTGCTCCCGGGCGCCTGCA | + |
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Preference number: 6 (lower is better) Translates to: SAARCRRGPPAP*ALPAPCSRAPA Trigger: TGCAGGCGCCCGGGAGCACGGAGCTGGAAGAGCTCACGGCGCAGGTGGCCCGCGTCTACAACGGGCGGCTGA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023694.11 ENSMUST00000125519.8 ENSMUST00000149833.8 |
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| CDS TCA 72 bp | CAGAAAGACACCGTGTTCCGCCAGCTCCTCCATCTCTaGGCAGAGCCGGTGCACCTTCAGCCGCCCGTTGTA | + |
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Preference number: 6 (lower is better) Translates to: QKDTVFRQLLHL*AEPVHLQPPVV Trigger: TACAACGGGCGGCTGAAGGTGCACCGGCTCTGCTCAGAGATGGAGGAGCTGGCGGAACACGGTGTCTTTCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023694.11 ENSMUST00000125519.8 |
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| CDS TCA 72 bp | CAGTTTCAGCTCTTCGATCTGCTCATCAGTCAGCCCTaGGCAGAGCCGGTGCACCTTCAGCCGCCCGTTGTA | + |
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Preference number: 6 (lower is better) Translates to: QFQLFDLLISQP*AEPVHLQPPVV Trigger: TACAACGGGCGGCTGAAGGTGCACCGGCTCTGCTCAGGGCTGACTGATGAGCAGATCGAAGAGCTGAAACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149833.8 |
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| CDS TCA 72 bp | GATCGTATGGTGGCAGCCCCATGGGATAAACGATCATaGCCGCACCTCGAAGCTGGTCCAAGGCATCTTTCA | + |
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Preference number: 6 (lower is better) Translates to: DRMVAAPWDKRS*PHLEAGPRHLS Trigger: TGAAAGATGCCTTGGACCAGCTTCGAGGTGCGGTCATGATCGTTTATCCCATGGGGCTGCCACCATACGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000023694.11 ENSMUST00000125519.8 ENSMUST00000129345.8 ENSMUST00000142340.2 ENSMUST00000149833.8 |
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| CDS CAA 90 bp | TTCACCATCTCCATGGTAACAAAGACTCCAGCTTCTACTTGTTTCTaGCCCGTTCCTCCGCCCGATCTCGTCCTTCGTAAAAACAGACCC | + |
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Preference number: 6 (lower is better) Translates to: FTISMVTKTPASTCF*PVPPPDLVLRKNRP Trigger: GGGTCTGTTTTTACGAAGGACGAGATCGGGCGGAGGAACGGGCAAGAAACAAGTAGAAGCTGGAGTCTTTGTTACCATGGAGATGGTGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000125519.8 |
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| CDS CAA 72 bp | TCCATGGTAACAAAGACTCCAGCTTCTACTTGTTTCTaGCCCGTTCCTCCGCCCGATCTCGTCCTTCGTAAA | + |
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Preference number: 6 (lower is better) Translates to: SMVTKTPASTCF*PVPPPDLVLRK Trigger: TTTACGAAGGACGAGATCGGGCGGAGGAACGGGCAAGAAACAAGTAGAAGCTGGAGTCTTTGTTACCATGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125519.8 |
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| CDS CCA 72 bp | TTTATTTTCAAATTCCATCCGGATAGGATCGTATGGTaGCAGCCCCATGGGATAAACGATCATGACCGCACC | + |
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Preference number: 6 (lower is better) Translates to: FIFKFHPDRIVW*QPHGINDHDRT Trigger: GGTGCGGTCATGATCGTTTATCCCATGGGGCTGCCACCATACGATCCTATCCGGATGGAATTTGAAAATAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023694.11 ENSMUST00000129345.8 ENSMUST00000142340.2 ENSMUST00000149833.8 |
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| CDS CCA 72 bp | TTCTTTATTTTCAAATTCCATCCGGATAGGATCGTATaGTGGCAGCCCCATGGGATAAACGATCATGACCGC | + |
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Preference number: 6 (lower is better) Translates to: FFIFKFHPDRIV*WQPHGINDHDR Trigger: GCGGTCATGATCGTTTATCCCATGGGGCTGCCACCATACGATCCTATCCGGATGGAATTTGAAAATAAAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023694.11 ENSMUST00000129345.8 ENSMUST00000142340.2 ENSMUST00000149833.8 |
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| CDS CAA 72 bp | CACCATCTCCATGGTAACAAAGACTCCAGCTTCTACTaGTTTCTTAGACACTATCGCCTTGGCTTCTTCTAC | + |
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Preference number: 6 (lower is better) Translates to: HHLHGNKDSSFY*FLRHYRLGFFY Trigger: GTAGAAGAAGCCAAGGCGATAGTGTCTAAGAAACAAGTAGAAGCTGGAGTCTTTGTTACCATGGAGATGGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023694.11 ENSMUST00000129345.8 ENSMUST00000142340.2 ENSMUST00000149833.8 |
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| CDS CAA 72 bp | ACTCCAGCTTCTACTTGTTTCTTAGACACTATCGCCTaGGCTTCTTCTACCGTCTTCTTTAAAACCTGCTTC | + |
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Preference number: 6 (lower is better) Translates to: TPASTCFLDTIA*ASSTVFFKTCF Trigger: GAAGCAGGTTTTAAAGAAGACGGTAGAAGAAGCCAAGGCGATAGTGTCTAAGAAACAAGTAGAAGCTGGAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023694.11 ENSMUST00000129345.8 ENSMUST00000142340.2 ENSMUST00000149833.8 |
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| CDS CAA 90 bp | GTAACAAAGACTCCAGCTTCTACTTGTTTCTTAGACACTATCGCCTaGGCTTCTTCTACCGTCTTCTTTAAAACCTGCTTCATTTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: VTKTPASTCFLDTIA*ASSTVFFKTCFIFS Trigger: TGAGAAAATGAAGCAGGTTTTAAAGAAGACGGTAGAAGAAGCCAAGGCGATAGTGTCTAAGAAACAAGTAGAAGCTGGAGTCTTTGTTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023694.11 ENSMUST00000129345.8 ENSMUST00000142340.2 ENSMUST00000149833.8 |
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| CDS GCA 72 bp | TTCAGACAGGAGTCATCGTCATTCTCTTCCAGTTTCTaGTGGATCTTGACGATGATTTTGGTTTTCTCATTT | + |
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Preference number: 6 (lower is better) Translates to: FRQESSSFSSSF*WILTMILVFSF Trigger: AAATGAGAAAACCAAAATCATCGTCAAGATCCAGCAGAAACTGGAAGAGAATGACGATGACTCCTGTCTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129345.8 |
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