Pregenerated sensors for CFAP221 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036962Ensembl transcript IDs: ENSMUST00000037840.12, ENSMUST00000174370.8, ENSMUST00000174458.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | AGTGGTTTGAATGTAAATGAACTCAGAGGACCTCAGTaGCCTTTGAAGGCAAGGAGAGCAACGGGCACACCA | + |
|
Preference number: 3 (lower is better) Translates to: SGLNVNELRGPQ*PLKARRATGTP Trigger: TGGTGTGCCCGTTGCTCTCCTTGCCTTCAAAGGTCACTGAGGTCCTCTGAGTTCATTTACATTCAAACCACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174370.8 |
||
| CDS CCA 90 bp | GTCTGTCTTCTTCTGGTAAGTCCTCCAGTGGGGCAGGGACATCTATaGGCAGCATCACGGAACTGTACCAGTCACTTCTCTGAGTGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: VCLLLVSPPVGQGHL*AASRNCTSHFSEWL Trigger: AAGCCACTCAGAGAAGTGACTGGTACAGTTCCGTGATGCTGCCCATAGATGTCCCTGCCCCACTGGAGGACTTACCAGAAGAAGACAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CCA 90 bp | ATTCCACAGACATGGCTAAGCCCTCAGGTGGTTTCATACTCAAGATaGAGGGCTTTGCCGAGAGCGGTGTGGTATCCTTCTTGGGTATGG | + |
|
Preference number: 5 (lower is better) Translates to: IPQTWLSPQVVSYSR*RALPRAVWYPSWVW Trigger: CCATACCCAAGAAGGATACCACACCGCTCTCGGCAAAGCCCTCCATCTTGAGTATGAAACCACCTGAGGGCTTAGCCATGTCTGTGGAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CCA 90 bp | GGAGTCCCTGTGAATCAGCATGGGGAATTCCACTTGGACCATTTCTaGCGTCAGCATGACTTCTATGCCCTGATCACAGAGATCTCGCTC | + |
|
Preference number: 5 (lower is better) Translates to: GVPVNQHGEFHLDHF*RQHDFYALITEISL Trigger: GAGCGAGATCTCTGTGATCAGGGCATAGAAGTCATGCTGACGCCAGAAATGGTCCAAGTGGAATTCCCCATGCTGATTCACAGGGACTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CCA 90 bp | AGGAATGCTGGACCCCATGTGGGACTCCTGGGTGTACTTGTACTTTaGGTGAGAGCACAGATGGTAATCTATCAGTGTCTCCGCATAGGT | + |
|
Preference number: 5 (lower is better) Translates to: RNAGPHVGLLGVLVL*VRAQMVIYQCLRIG Trigger: ACCTATGCGGAGACACTGATAGATTACCATCTGTGCTCTCACCCAAAGTACAAGTACACCCAGGAGTCCCACATGGGGTCCAGCATTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS TCA 90 bp | CTATCTCATAGCCTCCAAAGTGGACTATGCCTGGCCTGGCCTGGATaGCCTTGTTGTTCAGAAGCTTGGCATAAACCCTGGATTCCAGAA | + |
|
Preference number: 5 (lower is better) Translates to: LSHSLQSGLCLAWPG*PCCSEAWHKPWIPE Trigger: TTCTGGAATCCAGGGTTTATGCCAAGCTTCTGAACAACAAGGTCATCCAGGCCAGGCCAGGCATAGTCCACTTTGGAGGCTATGAGATAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 ENSMUST00000174458.2 |
||
| CDS TCA 90 bp | AACTGGGTGGAGTCTTTGAAATCCTTCTCCTTCTTGGAGTCCCTGTaGATCAGCATGGGGAATTCCACTTGGACCATTTCTGGCGTCAGC | + |
|
Preference number: 5 (lower is better) Translates to: NWVESLKSFSFLESL*ISMGNSTWTISGVS Trigger: GCTGACGCCAGAAATGGTCCAAGTGGAATTCCCCATGCTGATTCACAGGGACTCCAAGAAGGAGAAGGATTTCAAAGACTCCACCCAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS TCA 90 bp | GGCTGGAACTTCTTCCAGTTCATGATTCCAGGAATTATATCCGTATaGTGGAGAAACTGCCTTTGGGTGAGAGGAATGCTGGACCCCATG | + |
|
Preference number: 5 (lower is better) Translates to: GWNFFQFMIPGIISV*WRNCLWVRGMLDPM Trigger: CATGGGGTCCAGCATTCCTCTCACCCAAAGGCAGTTTCTCCATCATACGGATATAATTCCTGGAATCATGAACTGGAAGAAGTTCCAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CCA 90 bp | CAGTGTCTCCGCATAGGTCAGAGGATGCTTCACGGCAAACAGTCCTaGGCTGGGATTAAAAATATACAGCGGATCATATTCCACAGACAT | + |
|
Preference number: 5 (lower is better) Translates to: QCLRIGQRMLHGKQS*AGIKNIQRIIFHRH Trigger: ATGTCTGTGGAATATGATCCGCTGTATATTTTTAATCCCAGCCCAGGACTGTTTGCCGTGAAGCATCCTCTGACCTATGCGGAGACACTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS TCA 90 bp | ATAGTAGCGCCACTCATCTGGAGAAAATGTAATAGTGACCGTGAGTaGCAAGCCTGGGATGAGCCGGTGCTCCTTCTTTTCAAAGTTGAT | + |
|
Preference number: 5 (lower is better) Translates to: IVAPLIWRKCNSDRE*QAWDEPVLLLFKVD Trigger: ATCAACTTTGAAAAGAAGGAGCACCGGCTCATCCCAGGCTTGTCACTCACGGTCACTATTACATTTTCTCCAGATGAGTGGCGCTACTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 ENSMUST00000174458.2 |
||
| CDS TCA 90 bp | CAGACATGGAGGAAAACACCAGGGGCTGGAACTTCTTCCAGTTCATaGTTCCAGGAATTATATCCGTATGATGGAGAAACTGCCTTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: QTWRKTPGAGTSSSS*FQELYPYDGETAFG Trigger: CCCAAAGGCAGTTTCTCCATCATACGGATATAATTCCTGGAATCATGAACTGGAAGAAGTTCCAGCCCCTGGTGTTTTCCTCCATGTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS TCA 90 bp | AATTCCACTTGGACCATTTCTGGCGTCAGCATGACTTCTATGCCCTaGTCACAGAGATCTCGCTCAGTAGTTTCCAGTCTGTCTTCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: NSTWTISGVSMTSMP*SQRSRSVVSSLSSS Trigger: AGAAGAAGACAGACTGGAAACTACTGAGCGAGATCTCTGTGATCAGGGCATAGAAGTCATGCTGACGCCAGAAATGGTCCAAGTGGAATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CCA 90 bp | TCCAGGACTTGTTTTAATTCCTTAATCTTCAACTTTCCAGGTTCCTaGTTTAGGACGGTTGCCACGGCAAATGGATTTGACAGGTCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: SRTCFNSLIFNFPGS*FRTVATANGFDRSA Trigger: AGCTGACCTGTCAAATCCATTTGCCGTGGCAACCGTCCTAAACCAGGAACCTGGAAAGTTGAAGATTAAGGAATTAAAACAAGTCCTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS GCA 90 bp | TGGCTGAGAGTTGAACTGGGAGATCCACAATTGAATTTTTATCTGTaGCATCCCATACTGGATGGGTGTGAACTTGACAGTTACTTTTGC | + |
|
Preference number: 5 (lower is better) Translates to: WLRVELGDPQLNFYL*HPILDGCELDSYFC Trigger: GCAAAAGTAACTGTCAAGTTCACACCCATCCAGTATGGGATGGCACAGATAAAAATTCAATTGTGGATCTCCCAGTTCAACTCTCAGCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CCA 72 bp | ACGATGCGCTTTTGGCTCTGTTCGGTCTGCAGTCGCTaGAGCTCCTCCCCTTCCACAGGGTCGCCTCTGTTT | + |
|
Preference number: 6 (lower is better) Translates to: TMRFWLCSVCSR*SSSPSTGSPLF Trigger: AAACAGAGGCGACCCTGTGGAAGGGGAGGAGCTCCAGCGACTGCAGACCGAACAGAGCCAAAAGCGCATCGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 72 bp | CTGTCTTTTCCCCTTCAGGTCGCGGACGATGCGCTTTaGGCTCTGTTCGGTCTGCAGTCGCTGGAGCTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: LSFPLQVADDAL*ALFGLQSLELL Trigger: GAGGAGCTCCAGCGACTGCAGACCGAACAGAGCCAAAAGCGCATCGTCCGCGACCTGAAGGGGAAAAGACAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS TCA 72 bp | ATGGGCAGCATCACGGAACTGTACCAGTCACTTCTCTaGGTGGCTTCCACCATAGAGGGGTCAGACATGGAG | + |
|
Preference number: 6 (lower is better) Translates to: MGSITELYQSLL*VASTIEGSDME Trigger: CTCCATGTCTGACCCCTCTATGGTGGAAGCCACTCAGAGAAGTGACTGGTACAGTTCCGTGATGCTGCCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS GCA 72 bp | GCCCTCAGGTGGTTTCATACTCAAGATGGAGGGCTTTaGCGAGAGCGGTGTGGTATCCTTCTTGGGTATGGT | + |
|
Preference number: 6 (lower is better) Translates to: ALRWFHTQDGGL*RERCGILLGYG Trigger: ACCATACCCAAGAAGGATACCACACCGCTCTCGGCAAAGCCCTCCATCTTGAGTATGAAACCACCTGAGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 72 bp | CAGGTGGGCCCTCCGCCCTCGGGAGGGATTCTCTCCTaGTATCAGTTTTCCGTTGACTTGGATAATCTTCCT | + |
|
Preference number: 6 (lower is better) Translates to: QVGPPPSGGILS*YQFSVDLDNLP Trigger: AGGAAGATTATCCAAGTCAACGGAAAACTGATACAAGGAGAGAATCCCTCCCGAGGGCGGAGGGCCCACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CCA 72 bp | ACATGGCTAAGCCCTCAGGTGGTTTCATACTCAAGATaGAGGGCTTTGCCGAGAGCGGTGTGGTATCCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: TWLSPQVVSYSR*RALPRAVWYPS Trigger: AGAAGGATACCACACCGCTCTCGGCAAAGCCCTCCATCTTGAGTATGAAACCACCTGAGGGCTTAGCCATGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 90 bp | GAGGAATGCTGGACCCCATGTGGGACTCCTGGGTGTACTTGTACTTaGGGTGAGAGCACAGATGGTAATCTATCAGTGTCTCCGCATAGG | + |
|
Preference number: 6 (lower is better) Translates to: EECWTPCGTPGCTCT*GESTDGNLSVSPHR Trigger: CCTATGCGGAGACACTGATAGATTACCATCTGTGCTCTCACCCAAAGTACAAGTACACCCAGGAGTCCCACATGGGGTCCAGCATTCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 90 bp | ATACTCAAGATGGAGGGCTTTGCCGAGAGCGGTGTGGTATCCTTCTaGGGTATGGTTATGATGGTGGTGACTTCATCCTCAGCACCATGC | + |
|
Preference number: 6 (lower is better) Translates to: ILKMEGFAESGVVSF*GMVMMVVTSSSAPC Trigger: GCATGGTGCTGAGGATGAAGTCACCACCATCATAACCATACCCAAGAAGGATACCACACCGCTCTCGGCAAAGCCCTCCATCTTGAGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS TCA 72 bp | TGGGGAATTCCACTTGGACCATTTCTGGCGTCAGCATaGCTTCTATGCCCTGATCACAGAGATCTCGCTCAG | + |
|
Preference number: 6 (lower is better) Translates to: WGIPLGPFLASA*LLCPDHRDLAQ Trigger: CTGAGCGAGATCTCTGTGATCAGGGCATAGAAGTCATGCTGACGCCAGAAATGGTCCAAGTGGAATTCCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS GCA 72 bp | CATGATCTTGCGAGCTGCTTGCTGAAACCGTCTTTGTaGCCGGTGTCTGGTCAGCCACACATTATTCACAAG | + |
|
Preference number: 6 (lower is better) Translates to: HDLASCLLKPSL*PVSGQPHIIHK Trigger: CTTGTGAATAATGTGTGGCTGACCAGACACCGGGCACAAAGACGGTTTCAGCAAGCAGCTCGCAAGATCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CCA 72 bp | GGACCCCATGTGGGACTCCTGGGTGTACTTGTACTTTaGGTGAGAGCACAGATGGTAATCTATCAGTGTCTC | + |
|
Preference number: 6 (lower is better) Translates to: GPHVGLLGVLVL*VRAQMVIYQCL Trigger: GAGACACTGATAGATTACCATCTGTGCTCTCACCCAAAGTACAAGTACACCCAGGAGTCCCACATGGGGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 72 bp | GTTCCTGGTTTAGGACGGTTGCCACGGCAAATGGATTaGACAGGTCAGCTGGAAACCGCAGGTCCTGATAAT | + |
|
Preference number: 6 (lower is better) Translates to: VPGLGRLPRQMD*TGQLETAGPDN Trigger: ATTATCAGGACCTGCGGTTTCCAGCTGACCTGTCAAATCCATTTGCCGTGGCAACCGTCCTAAACCAGGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 72 bp | CTTGGAGTCCCTGTGAATCAGCATGGGGAATTCCACTaGGACCATTTCTGGCGTCAGCATGACTTCTATGCC | + |
|
Preference number: 6 (lower is better) Translates to: LGVPVNQHGEFH*DHFWRQHDFYA Trigger: GGCATAGAAGTCATGCTGACGCCAGAAATGGTCCAAGTGGAATTCCCCATGCTGATTCACAGGGACTCCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 90 bp | CTTCTCCTTCTTGGAGTCCCTGTGAATCAGCATGGGGAATTCCACTaGGACCATTTCTGGCGTCAGCATGACTTCTATGCCCTGATCACA | + |
|
Preference number: 6 (lower is better) Translates to: LLLLGVPVNQHGEFH*DHFWRQHDFYALIT Trigger: TGTGATCAGGGCATAGAAGTCATGCTGACGCCAGAAATGGTCCAAGTGGAATTCCCCATGCTGATTCACAGGGACTCCAAGAAGGAGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS TCA 72 bp | CCACTCATCTGGAGAAAATGTAATAGTGACCGTGAGTaGCAAGCCTGGGATGAGCCGGTGCTCCTTCTTTTC | + |
|
Preference number: 6 (lower is better) Translates to: PLIWRKCNSDRE*QAWDEPVLLLF Trigger: GAAAAGAAGGAGCACCGGCTCATCCCAGGCTTGTCACTCACGGTCACTATTACATTTTCTCCAGATGAGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 ENSMUST00000174458.2 |
||
| CDS GCA 72 bp | TGGGGACAAGCAAGGTGTCATCTCCCTTACAGTGAATaGGGATGCAGTCATAATAGTAGCGCCACTCATCTG | + |
|
Preference number: 6 (lower is better) Translates to: WGQARCHLPYSE*GCSHNSSATHL Trigger: CAGATGAGTGGCGCTACTATTATGACTGCATCCGCATTCACTGTAAGGGAGATGACACCTTGCTTGTCCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 ENSMUST00000174458.2 |
||
| CDS CCA 72 bp | GTGAATCAGCATGGGGAATTCCACTTGGACCATTTCTaGCGTCAGCATGACTTCTATGCCCTGATCACAGAG | + |
|
Preference number: 6 (lower is better) Translates to: VNQHGEFHLDHF*RQHDFYALITE Trigger: CTCTGTGATCAGGGCATAGAAGTCATGCTGACGCCAGAAATGGTCCAAGTGGAATTCCCCATGCTGATTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CCA 72 bp | AATCCTTCTCCTTCTTGGAGTCCCTGTGAATCAGCATaGGGAATTCCACTTGGACCATTTCTGGCGTCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: NPSPSWSPCESA*GIPLGPFLASA Trigger: TGCTGACGCCAGAAATGGTCCAAGTGGAATTCCCCATGCTGATTCACAGGGACTCCAAGAAGGAGAAGGATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 72 bp | TGGACCCCATGTGGGACTCCTGGGTGTACTTGTACTTaGGGTGAGAGCACAGATGGTAATCTATCAGTGTCT | + |
|
Preference number: 6 (lower is better) Translates to: WTPCGTPGCTCT*GESTDGNLSVS Trigger: AGACACTGATAGATTACCATCTGTGCTCTCACCCAAAGTACAAGTACACCCAGGAGTCCCACATGGGGTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 72 bp | TCCAGGAATTATATCCGTATGATGGAGAAACTGCCTTaGGGTGAGAGGAATGCTGGACCCCATGTGGGACTC | + |
|
Preference number: 6 (lower is better) Translates to: SRNYIRMMEKLP*GERNAGPHVGL Trigger: GAGTCCCACATGGGGTCCAGCATTCCTCTCACCCAAAGGCAGTTTCTCCATCATACGGATATAATTCCTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 90 bp | ACTTTCCAGGTTCCTGGTTTAGGACGGTTGCCACGGCAAATGGATTaGACAGGTCAGCTGGAAACCGCAGGTCCTGATAATCAATTTCCT | + |
|
Preference number: 6 (lower is better) Translates to: TFQVPGLGRLPRQMD*TGQLETAGPDNQFP Trigger: AGGAAATTGATTATCAGGACCTGCGGTTTCCAGCTGACCTGTCAAATCCATTTGCCGTGGCAACCGTCCTAAACCAGGAACCTGGAAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 90 bp | GCCCTCCGCCCTCGGGAGGGATTCTCTCCTTGTATCAGTTTTCCGTaGACTTGGATAATCTTCCTCAAGATGCTTTCTTTGTCCATTCCA | + |
|
Preference number: 6 (lower is better) Translates to: ALRPREGFSPCISFP*TWIIFLKMLSLSIP Trigger: TGGAATGGACAAAGAAAGCATCTTGAGGAAGATTATCCAAGTCAACGGAAAACTGATACAAGGAGAGAATCCCTCCCGAGGGCGGAGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 90 bp | GTTCATGATTCCAGGAATTATATCCGTATGATGGAGAAACTGCCTTaGGGTGAGAGGAATGCTGGACCCCATGTGGGACTCCTGGGTGTA | + |
|
Preference number: 6 (lower is better) Translates to: VHDSRNYIRMMEKLP*GERNAGPHVGLLGV Trigger: TACACCCAGGAGTCCCACATGGGGTCCAGCATTCCTCTCACCCAAAGGCAGTTTCTCCATCATACGGATATAATTCCTGGAATCATGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 90 bp | ATCAGTTTTCCGTTGACTTGGATAATCTTCCTCAAGATGCTTTCTTaGTCCATTCCACGGATAGCCCCCAGCATACTGAGCAACCTTCGC | + |
|
Preference number: 6 (lower is better) Translates to: ISFPLTWIIFLKMLS*SIPRIAPSILSNLR Trigger: GCGAAGGTTGCTCAGTATGCTGGGGGCTATCCGTGGAATGGACAAAGAAAGCATCTTGAGGAAGATTATCCAAGTCAACGGAAAACTGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS GCA 72 bp | CAAGCAAGGTGTCATCTCCCTTACAGTGAATGCGGATaGAGTCATAATAGTAGCGCCACTCATCTGGAGAAA | + |
|
Preference number: 6 (lower is better) Translates to: QARCHLPYSECG*SHNSSATHLEK Trigger: TTTCTCCAGATGAGTGGCGCTACTATTATGACTGCATCCGCATTCACTGTAAGGGAGATGACACCTTGCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 ENSMUST00000174458.2 |
||
| CDS CCA 72 bp | CGCATAGGTCAGAGGATGCTTCACGGCAAACAGTCCTaGGCTGGGATTAAAAATATACAGCGGATCATATTC | + |
|
Preference number: 6 (lower is better) Translates to: RIGQRMLHGKQS*AGIKNIQRIIF Trigger: GAATATGATCCGCTGTATATTTTTAATCCCAGCCCAGGACTGTTTGCCGTGAAGCATCCTCTGACCTATGCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 72 bp | GGTCCTGATAATCAATTTCCTTCAACTTCTGCGGTTTaGCCTTTGCCGGAGCCGGGTAAAATTGCACATACG | + |
|
Preference number: 6 (lower is better) Translates to: GPDNQFPSTSAV*PLPEPGKIAHT Trigger: CGTATGTGCAATTTTACCCGGCTCCGGCAAAGGCAAAACCGCAGAAGTTGAAGGAAATTGATTATCAGGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS TCA 72 bp | TTTCTCCCACCTTTTCTGGTAACTGGGTGGAGTCTTTaGAATCCTTCTCCTTCTTGGAGTCCCTGTGAATCA | + |
|
Preference number: 6 (lower is better) Translates to: FLPPFLVTGWSL*NPSPSWSPCES Trigger: TGATTCACAGGGACTCCAAGAAGGAGAAGGATTTCAAAGACTCCACCCAGTTACCAGAAAAGGTGGGAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS GCA 72 bp | GTCCTGATAATCAATTTCCTTCAACTTCTGCGGTTTTaGCTTTGCCGGAGCCGGGTAAAATTGCACATACGT | + |
|
Preference number: 6 (lower is better) Translates to: VLIINFLQLLRF*LCRSRVKLHIR Trigger: ACGTATGTGCAATTTTACCCGGCTCCGGCAAAGGCAAAACCGCAGAAGTTGAAGGAAATTGATTATCAGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CCA 72 bp | TCTGTTCGAAGATCGCTTCCTTCATCTGTCTGGTTTTaGAGATTTCGTCACCTTGGTCCAGGACTTGTTTTA | + |
|
Preference number: 6 (lower is better) Translates to: SVRRSLPSSVWF*RFRHLGPGLVL Trigger: TAAAACAAGTCCTGGACCAAGGTGACGAAATCTCCAAAACCAGACAGATGAAGGAAGCGATCTTCGAACAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 72 bp | TTCGTATGGCTGAGAGTTGAACTGGGAGATCCACAATaGAATTTTTATCTGTGCCATCCCATACTGGATGGG | + |
|
Preference number: 6 (lower is better) Translates to: FVWLRVELGDPQ*NFYLCHPILDG Trigger: CCCATCCAGTATGGGATGGCACAGATAAAAATTCAATTGTGGATCTCCCAGTTCAACTCTCAGCCATACGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 72 bp | CCTCGGGAGGGATTCTCTCCTTGTATCAGTTTTCCGTaGACTTGGATAATCTTCCTCAAGATGCTTTCTTTG | + |
|
Preference number: 6 (lower is better) Translates to: PREGFSPCISFP*TWIIFLKMLSL Trigger: CAAAGAAAGCATCTTGAGGAAGATTATCCAAGTCAACGGAAAACTGATACAAGGAGAGAATCCCTCCCGAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 90 bp | GAAGACACATTCGTATGGCTGAGAGTTGAACTGGGAGATCCACAATaGAATTTTTATCTGTGCCATCCCATACTGGATGGGTGTGAACTT | + |
|
Preference number: 6 (lower is better) Translates to: EDTFVWLRVELGDPQ*NFYLCHPILDGCEL Trigger: AAGTTCACACCCATCCAGTATGGGATGGCACAGATAAAAATTCAATTGTGGATCTCCCAGTTCAACTCTCAGCCATACGAATGTGTCTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS TCA 72 bp | GGAATTATTCCTGACTTTGGCTCAATCGTAAAGGCCTaGTGTGACCGAAGCAACGTGATATGGAATTCGAAA | + |
|
Preference number: 6 (lower is better) Translates to: GIIPDFGSIVKA*CDRSNVIWNSK Trigger: TTTCGAATTCCATATCACGTTGCTTCGGTCACATCAGGCCTTTACGATTGAGCCAAAGTCAGGAATAATTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS TCA 72 bp | CAGGGGTCGAGCAAGCTTCTGAAGTCTGTAATTTGTTaGGGACTTGTTGACAGAAAATGGATGATATCCCTT | + |
|
Preference number: 6 (lower is better) Translates to: QGSSKLLKSVIC*GLVDRKWMISL Trigger: AAGGGATATCATCCATTTTCTGTCAACAAGTCCTCAACAAATTACAGACTTCAGAAGCTTGCTCGACCCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS TCA 72 bp | TTCTTCCAGTTCATGATTCCAGGAATTATATCCGTATaGTGGAGAAACTGCCTTTGGGTGAGAGGAATGCTG | + |
|
Preference number: 6 (lower is better) Translates to: FFQFMIPGIISV*WRNCLWVRGML Trigger: CAGCATTCCTCTCACCCAAAGGCAGTTTCTCCATCATACGGATATAATTCCTGGAATCATGAACTGGAAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS TCA 72 bp | AGGAAAACACCAGGGGCTGGAACTTCTTCCAGTTCATaGTTCCAGGAATTATATCCGTATGATGGAGAAACT | + |
|
Preference number: 6 (lower is better) Translates to: RKTPGAGTSSSS*FQELYPYDGET Trigger: AGTTTCTCCATCATACGGATATAATTCCTGGAATCATGAACTGGAAGAAGTTCCAGCCCCTGGTGTTTTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS GCA 72 bp | GTTGAACTGGGAGATCCACAATTGAATTTTTATCTGTaGCATCCCATACTGGATGGGTGTGAACTTGACAGT | + |
|
Preference number: 6 (lower is better) Translates to: VELGDPQLNFYL*HPILDGCELDS Trigger: ACTGTCAAGTTCACACCCATCCAGTATGGGATGGCACAGATAAAAATTCAATTGTGGATCTCCCAGTTCAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 72 bp | TTTATCTGTGCCATCCCATACTGGATGGGTGTGAACTaGACAGTTACTTTTGCCTTCCCATTAGCTGGAATT | + |
|
Preference number: 6 (lower is better) Translates to: FICAIPYWMGVN*TVTFAFPLAGI Trigger: AATTCCAGCTAATGGGAAGGCAAAAGTAACTGTCAAGTTCACACCCATCCAGTATGGGATGGCACAGATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CAA 72 bp | GGAGGGATTCTCTCCTTGTATCAGTTTTCCGTTGACTaGGATAATCTTCCTCAAGATGCTTTCTTTGTCCAT | + |
|
Preference number: 6 (lower is better) Translates to: GGILSLYQFSVD*DNLPQDAFFVH Trigger: ATGGACAAAGAAAGCATCTTGAGGAAGATTATCCAAGTCAACGGAAAACTGATACAAGGAGAGAATCCCTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||
| CDS CCA 72 bp | GAGGGATTCTCTCCTTGTATCAGTTTTCCGTTGACTTaGATAATCTTCCTCAAGATGCTTTCTTTGTCCATT | + |
|
Preference number: 6 (lower is better) Translates to: EGFSPCISFPLT*IIFLKMLSLSI Trigger: AATGGACAAAGAAAGCATCTTGAGGAAGATTATCCAAGTCAACGGAAAACTGATACAAGGAGAGAATCCCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037840.12 ENSMUST00000174370.8 |
||