Pregenerated sensors for CFAP20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031796Ensembl transcript IDs: ENSMUST00000034249.8, ENSMUST00000211908.2, ENSMUST00000212131.2, ENSMUST00000212684.2, ENSMUST00000213086.2
Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGGGTCTCGATGTAGTTCGTGCCATATGCCCGCCGGGTGAAATCTaGCAAGTTGAACTGAATCTGGTTCCAGCCATCATCCAGCCGCAT | + |
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Preference number: 1 (lower is better) Translates to: QGLDVVRAICPPGEI*QVELNLVPAIIQPH Trigger: ATGCGGCTGGATGATGGCTGGAACCAGATTCAGTTCAACTTGTCAGATTTCACCCGGCGGGCATATGGCACGAACTACATCGAGACCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212684.2 |
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| 3UTR CCA 90 bp | CTGCTTCCCTCCACTGACTTAGAATGCAAGGAACACAACTGTGCATaGTCACTGGTGTCCATGACAAGGACACAGTGGTCAGCGAGCCAC | + |
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Preference number: 1 (lower is better) Translates to: LLPSTDLECKEHNCA*SLVSMTRTQWSASH Trigger: GTGGCTCGCTGACCACTGTGTCCTTGTCATGGACACCAGTGACCATGCACAGTTGTGTTCCTTGCATTCTAAGTCAGTGGAGGGAAGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
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| 3UTR CCA 90 bp | GGCATTGCCCTGGCGTGGATTCCAACAGTAGGAGGATTCAGGAGATaGAGAGATGGCTCACTGGTTAATAACTTGCTCTTGCAGGGAGAG | + |
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Preference number: 1 (lower is better) Translates to: GIALAWIPTVGGFRR*RDGSLVNNLLLQGE Trigger: CTCTCCCTGCAAGAGCAAGTTATTAACCAGTGAGCCATCTCTCCATCTCCTGAATCCTCCTACTGTTGGAATCCACGCCAGGGCAATGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR GCA 90 bp | ACTCGTGTGTCACTCAAAGCTCTGCTTCCCTCCACTGACTTAGAATaGAAGGAACACAACTGTGCATGGTCACTGGTGTCCATGACAAGG | + |
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Preference number: 1 (lower is better) Translates to: TRVSLKALLPSTDLE*KEHNCAWSLVSMTR Trigger: CCTTGTCATGGACACCAGTGACCATGCACAGTTGTGTTCCTTGCATTCTAAGTCAGTGGAGGGAAGCAGAGCTTTGAGTGACACACGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
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| 3UTR GCA 90 bp | GTGCTGGAGCAGGCATACACAACATGTCCACAGTTGTACACCGCTTaGTCATTAGCCTTTGAGACTGACAAAGGATCAGATGGAGGGCAT | + |
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Preference number: 1 (lower is better) Translates to: VLEQAYTTCPQLYTA*SLAFETDKGSDGGH Trigger: ATGCCCTCCATCTGATCCTTTGTCAGTCTCAAAGGCTAATGAGCAAGCGGTGTACAACTGTGGACATGTTGTGTATGCCTGCTCCAGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR GCA 90 bp | TCTCATGGTACCCTAAAAACTTCATCTCTATTAGCAAACTGGCATTaGCCTGGCGTGGATTCCAACAGTAGGAGGATTCAGGAGATGGAG | + |
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Preference number: 1 (lower is better) Translates to: SHGTLKTSSLLANWH*PGVDSNSRRIQEME Trigger: CTCCATCTCCTGAATCCTCCTACTGTTGGAATCCACGCCAGGGCAATGCCAGTTTGCTAATAGAGATGAAGTTTTTAGGGTACCATGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR CCA 90 bp | GAACACAACTGTGCATGGTCACTGGTGTCCATGACAAGGACACAGTaGTCAGCGAGCCACAGCACAGTGGATTATTTAAATGTTTTTGCA | + |
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Preference number: 1 (lower is better) Translates to: EHNCAWSLVSMTRTQ*SASHSTVDYLNVFA Trigger: TGCAAAAACATTTAAATAATCCACTGTGCTGTGGCTCGCTGACCACTGTGTCCTTGTCATGGACACCAGTGACCATGCACAGTTGTGTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
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| 3UTR CCA 90 bp | AAGCCTTCTCATGGTACCCTAAAAACTTCATCTCTATTAGCAAACTaGCATTGCCCTGGCGTGGATTCCAACAGTAGGAGGATTCAGGAG | + |
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Preference number: 1 (lower is better) Translates to: KPSHGTLKTSSLLAN*HCPGVDSNSRRIQE Trigger: CTCCTGAATCCTCCTACTGTTGGAATCCACGCCAGGGCAATGCCAGTTTGCTAATAGAGATGAAGTTTTTAGGGTACCATGAGAAGGCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR TCA 90 bp | ACAGCTATCTTTAACTTCAGTTCTAGGGTATCTGACACCCTCTTCTaGCTTCCTCAGGTACCAGGCATACATGTGGTACACTGTGTGTGT | + |
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Preference number: 1 (lower is better) Translates to: TAIFNFSSRVSDTLF*LPQVPGIHVVHCVC Trigger: ACACACACAGTGTACCACATGTATGCCTGGTACCTGAGGAAGTCAGAAGAGGGTGTCAGATACCCTAGAACTGAAGTTAAAGATAGCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR TCA 90 bp | AAGGGTGTCTTACTTTGGCCTTGTTCTGAACTGGTAGATAGAGTTTaGACTCTGCTGGCAGCTCATCTTCTGAGTAGAGTCTGTCTGAGA | + |
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Preference number: 1 (lower is better) Translates to: KGVLLWPCSELVDRV*TLLAAHLLSRVCLR Trigger: TCTCAGACAGACTCTACTCAGAAGATGAGCTGCCAGCAGAGTTCAAACTCTATCTACCAGTTCAGAACAAGGCCAAAGTAAGACACCCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR CCA 90 bp | TCTTGCAGGGAGAGGACTGGGATTCAATTCCCAGGATCCATACAATaGCTTACAGCTATCTTTAACTTCAGTTCTAGGGTATCTGACACC | + |
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Preference number: 1 (lower is better) Translates to: SCRERTGIQFPGSIQ*LTAIFNFSSRVSDT Trigger: GGTGTCAGATACCCTAGAACTGAAGTTAAAGATAGCTGTAAGCCATTGTATGGATCCTGGGAATTGAATCCCAGTCCTCTCCCTGCAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR GCA 90 bp | TTCCTTTTTAAACTAAGACTCACATCCAGAGTCTGTCCCCTTAGCTaGTATCCAGTTATTGTTTGGCCTTGTTCTGAACTGGTAGATAGA | + |
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Preference number: 1 (lower is better) Translates to: FLFKLRLTSRVCPLS*YPVIVWPCSELVDR Trigger: TCTATCTACCAGTTCAGAACAAGGCCAAACAATAACTGGATAGCAGCTAAGGGGACAGACTCTGGATGTGAGTCTTAGTTTAAAAAGGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000212684.2 |
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| 3UTR CCA 90 bp | TATCCAATAACTTTTTCTGGCCTTCTAAAGCACCAGACACGAACATaGTACACAGATGTACTTGTAGGCAAAACATTCACATACACAAAT | + |
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Preference number: 1 (lower is better) Translates to: YPITFSGLLKHQTRT*YTDVLVGKTFTYTN Trigger: ATTTGTGTATGTGAATGTTTTGCCTACAAGTACATCTGTGTACCATGTTCGTGTCTGGTGCTTTAGAAGGCCAGAAAAAGTTATTGGATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR-3UTR CCA 90 bp | CAACTGTGCATGGTCACTGGTGTCCATGACAAGGACACAGTGGTCAGCGAGCCAGCATGTCCTAGACCATaGCTCCCCATGTCCTCCCCC | + |
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Preference number: 2 (lower is better) Translates to: QLCMVTGVHDKDTVVSEPACPRP*LPMSSP Trigger: GGGGGAGGACATGGGGAGCCATGGTCTAGGACATGC...TGGCTCGCTGACCACTGTGTCCTTGTCATGGACACCAGTGACCATGCACAGTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR-3UTR TCA 90 bp | AACTGTGCATGGTCACTGGTGTCCATGACAAGGACACAGTGGTCAGCGAGCCACGGTCACTGGTGTCCATaGCAAGGACACAGTGGTCAG | + |
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Preference number: 2 (lower is better) Translates to: NCAWSLVSMTRTQWSASHGHWCP*QGHSGQ Trigger: CTGACCACTGTGTCCTTGTCATGGACACCAGTGACC...GTGGCTCGCTGACCACTGTGTCCTTGTCATGGACACCAGTGACCATGCACAGTT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
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| 3UTR-3UTR GCA 90 bp | GGAAGGCCTGAGAGGGAAGGGACGATGCACTGCGGTGGCACCGGGAACAGAACATCCACTGACTTAGAATaGAAGGAACACAACTGTGCA | + |
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Preference number: 2 (lower is better) Translates to: GRPEREGTMHCGGTGNRTSTDLE*KEHNCA Trigger: TGCACAGTTGTGTTCCTTGCATTCTAAGTCAGTGGA...TGTTCTGTTCCCGGTGCCACCGCAGTGCATCGTCCCTTCCCTCTCAGGCCTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR-3UTR CCA 90 bp | AACTGTGCATGGTCACTGGTGTCCATGACAAGGACACAGTGGTCAGCGAGCCACATGACAAGGACACAGTaGTCAGCGAGCCACAGCACA | + |
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Preference number: 2 (lower is better) Translates to: NCAWSLVSMTRTQWSASHMTRTQ*SASHST Trigger: TGTGCTGTGGCTCGCTGACCACTGTGTCCTTGTCAT...GTGGCTCGCTGACCACTGTGTCCTTGTCATGGACACCAGTGACCATGCACAGTT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
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| 3UTR-3UTR CCA 90 bp | GGAAGGCCTGAGAGGGAAGGGACGATGCACTGCGGTGGCACCGGGAACAGAACATCCAATAACTTTTTCTaGCCTTCTAAAGCACCAGAC | + |
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Preference number: 2 (lower is better) Translates to: GRPEREGTMHCGGTGNRTSNNFF*PSKAPD Trigger: GTCTGGTGCTTTAGAAGGCCAGAAAAAGTTATTGGA...TGTTCTGTTCCCGGTGCCACCGCAGTGCATCGTCCCTTCCCTCTCAGGCCTTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR-3UTR TCA 90 bp | CGCAGGACACGTGATGTATGTGGTACCTTGATGAAGGTTGGCTCTAGCTGGATGACTCCTCACAGTCCTTaGGTGCCAGCTGAAACTCCA | + |
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Preference number: 2 (lower is better) Translates to: RRTRDVCGTLMKVGSSWMTPHSP*VPAETP Trigger: TGGAGTTTCAGCTGGCACTCAAGGACTGTGAGGAGT...CATCCAGCTAGAGCCAACCTTCATCAAGGTACCACATACATCACGTGTCCTGCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212131.2 |
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| 3UTR-3UTR GCA 90 bp | CAACTGTGCATGGTCACTGGTGTCCATGACAAGGACACAGTGGTCAGCGAGCCACAAGGAACACAACTGTaGATGGTCACTGGTGTCCAT | + |
|
Preference number: 2 (lower is better) Translates to: QLCMVTGVHDKDTVVSEPQGTQL*MVTGVH Trigger: ATGGACACCAGTGACCATGCACAGTTGTGTTCCTTG...TGGCTCGCTGACCACTGTGTCCTTGTCATGGACACCAGTGACCATGCACAGTTG 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
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| 3UTR-3UTR TCA 90 bp | TACGGCAGTTTGCATGGATCTGCACTCTCAGGGTCTCGATGTAGTTCGTGCCATCCGCCGGGTGAAATCTaGCAAGTTGAACTGAATCTG | + |
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Preference number: 2 (lower is better) Translates to: YGSLHGSALSGSRCSSCHPPGEI*QVELNL Trigger: CAGATTCAGTTCAACTTGTCAGATTTCACCCGGCGG...ATGGCACGAACTACATCGAGACCCTGAGAGTGCAGATCCATGCAAACTGCCGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212684.2 |
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| 3UTR CAA 90 bp | GTAGGAGGATTCAGGAGATGGAGAGATGGCTCACTGGTTAATAACTaGCTCTTGCAGGGAGAGGACTGGGATTCAATTCCCAGGATCCAT | + |
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Preference number: 2 (lower is better) Translates to: VGGFRRWRDGSLVNN*LLQGEDWDSIPRIH Trigger: ATGGATCCTGGGAATTGAATCCCAGTCCTCTCCCTGCAAGAGCAAGTTATTAACCAGTGAGCCATCTCTCCATCTCCTGAATCCTCCTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR-3UTR CCA 90 bp | CAACTGTGCATGGTCACTGGTGTCCATGACAAGGACACAGTGGTCAGCGAGCCACCAGGATCCATACAATaGCTTACAGCTATCTTTAAC | + |
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Preference number: 2 (lower is better) Translates to: QLCMVTGVHDKDTVVSEPPGSIQ*LTAIFN Trigger: GTTAAAGATAGCTGTAAGCCATTGTATGGATCCTGG...TGGCTCGCTGACCACTGTGTCCTTGTCATGGACACCAGTGACCATGCACAGTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR-3UTR CCA 90 bp | AGAATGCAAGGAACACAACTGTGCATGGTCACTGGTGTCCATGACAAGGACACAGGAGGATTCAGGAGATaGAGAGATGGCTCACTGGTT | + |
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Preference number: 2 (lower is better) Translates to: RMQGTQLCMVTGVHDKDTGGFRR*RDGSLV Trigger: AACCAGTGAGCCATCTCTCCATCTCCTGAATCCTCC...TGTGTCCTTGTCATGGACACCAGTGACCATGCACAGTTGTGTTCCTTGCATTCT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR-3UTR CCA 90 bp | TTAGAATGCAAGGAACACAACTGTGCATGGTCACTGGTGTCCATGACAAGGACAGGGACACAAGCGTGCTaGAGCAGGCATACACAACAT | + |
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Preference number: 2 (lower is better) Translates to: LECKEHNCAWSLVSMTRTGTQAC*SRHTQH Trigger: ATGTTGTGTATGCCTGCTCCAGCACGCTTGTGTCCC...TGTCCTTGTCATGGACACCAGTGACCATGCACAGTTGTGTTCCTTGCATTCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR CAA 90 bp | GGATTCAGGAGATGGAGAGATGGCTCACTGGTTAATAACTTGCTCTaGCAGGGAGAGGACTGGGATTCAATTCCCAGGATCCATACAATG | + |
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Preference number: 2 (lower is better) Translates to: GFRRWRDGSLVNNLL*QGEDWDSIPRIHTM Trigger: CATTGTATGGATCCTGGGAATTGAATCCCAGTCCTCTCCCTGCAAGAGCAAGTTATTAACCAGTGAGCCATCTCTCCATCTCCTGAATCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR-3UTR CCA 90 bp | GTCAGCGAGCCACAGCACAGTGGATTATTTAAATGTTTTTGCATGGTCTCCATGATGACAAGGACACAGTaGTCAGCGAGCCACAGCACA | + |
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Preference number: 2 (lower is better) Translates to: VSEPQHSGLFKCFCMVSMMTRTQ*SASHST Trigger: TGTGCTGTGGCTCGCTGACCACTGTGTCCTTGTCAT...CATGGAGACCATGCAAAAACATTTAAATAATCCACTGTGCTGTGGCTCGCTGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
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| 3UTR-3UTR CCA 90 bp | TTAGAATGCAAGGAACACAACTGTGCATGGTCACTGGTGTCCATGACAAGGACATTGCAGGGAGAGGACTaGGATTCAATTCCCAGGATC | + |
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Preference number: 2 (lower is better) Translates to: LECKEHNCAWSLVSMTRTLQGED*DSIPRI Trigger: GATCCTGGGAATTGAATCCCAGTCCTCTCCCTGCAA...TGTCCTTGTCATGGACACCAGTGACCATGCACAGTTGTGTTCCTTGCATTCTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR-3UTR TCA 90 bp | TTTAAACTAAGACTCACATCCAGAGTCTGTCCCCTTAGCTGCTATCCAGTTATTGGTCACTGGTGTCCATaGCAAGGACACAGTGGTCAG | + |
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Preference number: 2 (lower is better) Translates to: FKLRLTSRVCPLSCYPVIGHWCP*QGHSGQ Trigger: CTGACCACTGTGTCCTTGTCATGGACACCAGTGACC...AATAACTGGATAGCAGCTAAGGGGACAGACTCTGGATGTGAGTCTTAGTTTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000212684.2 ENSMUST00000213086.2 |
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| 3UTR-3UTR TCA 90 bp | AGAGTCTGTCTGAGAAGTAAACCCTTCGGATACGGCAGTTTGCATGGATCTGCATCTGACAAGTTGAACTaGATCTGGTTCCAGCCATCA | + |
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Preference number: 2 (lower is better) Translates to: RVCLRSKPFGYGSLHGSASDKLN*IWFQPS Trigger: TGATGGCTGGAACCAGATTCAGTTCAACTTGTCAGA...TGCAGATCCATGCAAACTGCCGTATCCGAAGGGTTTACTTCTCAGACAGACTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212684.2 |
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| 3UTR CAA 90 bp | CCACACAGTAGCTCACATCCATCCCTAACTCCTGTGGAGAGTTTTTaGGTATCCAATAACTTTTTCTGGCCTTCTAAAGCACCAGACACG | + |
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Preference number: 2 (lower is better) Translates to: PHSSSHPSLTPVESF*VSNNFFWPSKAPDT Trigger: CGTGTCTGGTGCTTTAGAAGGCCAGAAAAAGTTATTGGATACCAAAAAACTCTCCACAGGAGTTAGGGATGGATGTGAGCTACTGTGTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR-3UTR GCA 90 bp | GTCAGCGAGCCACAGCACAGTGGATTATTTAAATGTTTTTGCATGGTCTCCATGCAAGGAACACAACTGTaGATGGTCACTGGTGTCCAT | + |
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Preference number: 2 (lower is better) Translates to: VSEPQHSGLFKCFCMVSMQGTQL*MVTGVH Trigger: ATGGACACCAGTGACCATGCACAGTTGTGTTCCTTG...CATGGAGACCATGCAAAAACATTTAAATAATCCACTGTGCTGTGGCTCGCTGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
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| 3UTR-3UTR GCA 90 bp | GTCAGCGAGCCACAGCACAGTGGATTATTTAAATGTTTTTGCATGGTCTCCATGAAAGGACTGGAGAGTTaGTTCAGTGGTCAAAGCACT | + |
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Preference number: 2 (lower is better) Translates to: VSEPQHSGLFKCFCMVSMKGLES*FSGQST Trigger: AGTGCTTTGACCACTGAAGCAACTCTCCAGTCCTTT...CATGGAGACCATGCAAAAACATTTAAATAATCCACTGTGCTGTGGCTCGCTGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR-3UTR CCA 90 bp | AGAATGCAAGGAACACAACTGTGCATGGTCACTGGTGTCCATGACAAGGACACATCAGAAGCCTTCTCATaGTACCCTAAAAACTTCATC | + |
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Preference number: 2 (lower is better) Translates to: RMQGTQLCMVTGVHDKDTSEAFS*YPKNFI Trigger: GATGAAGTTTTTAGGGTACCATGAGAAGGCTTCTGA...TGTGTCCTTGTCATGGACACCAGTGACCATGCACAGTTGTGTTCCTTGCATTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR-3UTR GCA 90 bp | TTTAAACTAAGACTCACATCCAGAGTCTGTCCCCTTAGCTGCTATCCAGTTATTCAAGGAACACAACTGTaGATGGTCACTGGTGTCCAT | + |
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Preference number: 2 (lower is better) Translates to: FKLRLTSRVCPLSCYPVIQGTQL*MVTGVH Trigger: ATGGACACCAGTGACCATGCACAGTTGTGTTCCTTG...AATAACTGGATAGCAGCTAAGGGGACAGACTCTGGATGTGAGTCTTAGTTTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000212684.2 ENSMUST00000213086.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGTGGTCAGCGAGCCACAGCACAGTGGATTATTTAAATGTTTTTGCATGGTCTATAATTCAAAGGACTaGAGAGTTGCTTCAGTGGTC | + |
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Preference number: 2 (lower is better) Translates to: TVVSEPQHSGLFKCFCMVYNSKD*RVASVV Trigger: GACCACTGAAGCAACTCTCCAGTCCTTTGAATTATA...GACCATGCAAAAACATTTAAATAATCCACTGTGCTGTGGCTCGCTGACCACTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR GCA 72 bp | CCTTGTAGGACGTCTCTAATTCTTCCGTTTGTTGCGTaGGTCTCTCACGGGCCAGGGCAGGCAGCAGGAAAC | + |
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Preference number: 3 (lower is better) Translates to: PCRTSLILPFVA*VSHGPGQAAGN Trigger: GTTTCCTGCTGCCTGCCCTGGCCCGTGAGAGACGCACGCAACAAACGGAAGAATTAGAGACGTCCTACAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034249.8 ENSMUST00000213086.2 |
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| 3UTR GCA 72 bp | GAAATAGGAAGGCCTGAGAGGGAAGGGACGATGCACTaGGGTGGCACCGGGAACAGAACAGTCAGAACAGTC | + |
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Preference number: 3 (lower is better) Translates to: EIGRPEREGTMH*GGTGNRTVRTV Trigger: GACTGTTCTGACTGTTCTGTTCCCGGTGCCACCGCAGTGCATCGTCCCTTCCCTCTCAGGCCTTCCTATTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR CCA 72 bp | CCGGGTAGACACCAGGCTGTGGGGACACAAGCGTGCTaGAGCAGGCATACACAACATGTCCACAGTTGTACA | + |
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Preference number: 3 (lower is better) Translates to: PGRHQAVGTQAC*SRHTQHVHSCT Trigger: TGTACAACTGTGGACATGTTGTGTATGCCTGCTCCAGCACGCTTGTGTCCCCACAGCCTGGTGTCTACCCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR TCA 72 bp | GCAAGGAACACAACTGTGCATGGTCACTGGTGTCCATaGCAAGGACACAGTGGTCAGCGAGCCACAGCACAG | + |
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Preference number: 3 (lower is better) Translates to: ARNTTVHGHWCP*QGHSGQRATAQ Trigger: CTGTGCTGTGGCTCGCTGACCACTGTGTCCTTGTCATGGACACCAGTGACCATGCACAGTTGTGTTCCTTGC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
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| 3UTR TCA 72 bp | CCATATGCCCGCCGGGTGAAATCTGACAAGTTGAACTaGATCTGGTTCCAGCCATCATCCAGCCGCATGGGC | + |
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Preference number: 3 (lower is better) Translates to: PYARRVKSDKLN*IWFQPSSSRMG Trigger: GCCCATGCGGCTGGATGATGGCTGGAACCAGATTCAGTTCAACTTGTCAGATTTCACCCGGCGGGCATATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212684.2 |
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| 3UTR CCA 72 bp | CTTACTTCTGATGATACCCGGGTAGACACCAGGCTGTaGGGACACAAGCGTGCTGGAGCAGGCATACACAAC | + |
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Preference number: 3 (lower is better) Translates to: LTSDDTRVDTRL*GHKRAGAGIHN Trigger: GTTGTGTATGCCTGCTCCAGCACGCTTGTGTCCCCACAGCCTGGTGTCTACCCGGGTATCATCAGAAGTAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR-3UTR CAA 90 bp | CAACTGTGCATGGTCACTGGTGTCCATGACAAGGACACAGTGGTCAGCGAGCCACTCCTGAACAATACCTaGGGGACTTTGGCTAGAAGC | + |
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Preference number: 3 (lower is better) Translates to: QLCMVTGVHDKDTVVSEPLLNNT*GTLARS Trigger: GCTTCTAGCCAAAGTCCCCAAGGTATTGTTCAGGAG...TGGCTCGCTGACCACTGTGTCCTTGTCATGGACACCAGTGACCATGCACAGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR CCA 72 bp | ACAGAACAGTCAGAACAGTCCACAGCTCCCCTGACTTaGCACTGCCACACTGTAAGGGGGATTAAGGCAATG | + |
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Preference number: 3 (lower is better) Translates to: TEQSEQSTAPLT*HCHTVRGIKAM Trigger: CATTGCCTTAATCCCCCTTACAGTGTGGCAGTGCCAAGTCAGGGGAGCTGTGGACTGTTCTGACTGTTCTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| 3UTR-3UTR CAA 90 bp | CCAGCCATCATCCAGCCGCATGGGCATGGTACAGATGAAGGGCTTGACTCGAGTTACTCTGGTAGTTACTaGCTCGAAACCTTCGACGAA | + |
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Preference number: 3 (lower is better) Translates to: PAIIQPHGHGTDEGLDSSYSGSY*LETFDE Trigger: TTCGTCGAAGGTTTCGAGCAAGTAACTACCAGAGTA...ACTCGAGTCAAGCCCTTCATCTGTACCATGCCCATGCGGCTGGATGATGGCTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212684.2 |
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| 3UTR-3UTR CAA 90 bp | TGCTCTTGCAGGGAGAGGACTGGGATTCAATTCCCAGGATCCATACAATGGCTTGCTGGGGGTGGGAGGTaGCTTGTAGAATTTACCTTA | + |
|
Preference number: 3 (lower is better) Translates to: CSCRERTGIQFPGSIQWLAGGGR*LVEFTL Trigger: TAAGGTAAATTCTACAAGCAACCTCCCACCCCCAGC...AAGCCATTGTATGGATCCTGGGAATTGAATCCCAGTCCTCTCCCTGCAAGAGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
||
| 3UTR TCA 72 bp | GATGTAGTTCGTGCCATATGCCCGCCGGGTGAAATCTaGCAAGTTGAACTGAATCTGGTTCCAGCCATCATC | + |
|
Preference number: 3 (lower is better) Translates to: DVVRAICPPGEI*QVELNLVPAII Trigger: GATGATGGCTGGAACCAGATTCAGTTCAACTTGTCAGATTTCACCCGGCGGGCATATGGCACGAACTACATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212684.2 |
||
| 3UTR GCA 72 bp | TCACTCAAAGCTCTGCTTCCCTCCACTGACTTAGAATaGAAGGAACACAACTGTGCATGGTCACTGGTGTCC | + |
|
Preference number: 3 (lower is better) Translates to: SLKALLPSTDLE*KEHNCAWSLVS Trigger: GGACACCAGTGACCATGCACAGTTGTGTTCCTTGCATTCTAAGTCAGTGGAGGGAAGCAGAGCTTTGAGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
||
| 3UTR GCA 72 bp | GATGGAGAGATGGCTCACTGGTTAATAACTTGCTCTTaGAGGGAGAGGACTGGGATTCAATTCCCAGGATCC | + |
|
Preference number: 3 (lower is better) Translates to: DGEMAHWLITCS*RERTGIQFPGS Trigger: GGATCCTGGGAATTGAATCCCAGTCCTCTCCCTGCAAGAGCAAGTTATTAACCAGTGAGCCATCTCTCCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
||
| 3UTR-3UTR CAA 90 bp | ACGGCAGTTTGCATGGATCTGCACTCTCAGGGTCTCGATGTAGTTCGTGCCATACTTCGACGAACGTTTTaGTCATCTAGTACCTGGACT | + |
|
Preference number: 3 (lower is better) Translates to: TAVCMDLHSQGLDVVRAILRRTF*SSSTWT Trigger: AGTCCAGGTACTAGATGACAAAAACGTTCGTCGAAG...TATGGCACGAACTACATCGAGACCCTGAGAGTGCAGATCCATGCAAACTGCCGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212684.2 |
||
| 3UTR GCA 72 bp | GGACTGGAGAGTTGCTTCAGTGGTCAAAGCACTTGTTaGTTTTGTAAAGGATCCAGGTTCAGTTCCCAGGAC | + |
|
Preference number: 3 (lower is better) Translates to: GLESCFSGQSTC*FCKGSRFSSQD Trigger: GTCCTGGGAACTGAACCTGGATCCTTTACAAAAGCAACAAGTGCTTTGACCACTGAAGCAACTCTCCAGTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
||
| 3UTR CCA 72 bp | TGTGCATGGTCACTGGTGTCCATGACAAGGACACAGTaGTCAGCGAGCCACAGCACAGTGGATTATTTAAAT | + |
|
Preference number: 3 (lower is better) Translates to: CAWSLVSMTRTQ*SASHSTVDYLN Trigger: ATTTAAATAATCCACTGTGCTGTGGCTCGCTGACCACTGTGTCCTTGTCATGGACACCAGTGACCATGCACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
||
| 3UTR CCA 72 bp | GCGCACGCATGCGCATATGTGTATAATTCAAAGGACTaGAGAGTTGCTTCAGTGGTCAAAGCACTTGTTGCT | + |
|
Preference number: 3 (lower is better) Translates to: AHACAYVYNSKD*RVASVVKALVA Trigger: AGCAACAAGTGCTTTGACCACTGAAGCAACTCTCCAGTCCTTTGAATTATACACATATGCGCATGCGTGCGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
||
| 3UTR-3UTR CAA 90 bp | TTTAAACTAAGACTCACATCCAGAGTCTGTCCCCTTAGCTGCTATCCAGTTATTGTACAGATGAAGGGCTaGACTCGAGTGGTACTCTGG | + |
|
Preference number: 3 (lower is better) Translates to: FKLRLTSRVCPLSCYPVIVQMKG*TRVVLW Trigger: CCAGAGTACCACTCGAGTCAAGCCCTTCATCTGTAC...AATAACTGGATAGCAGCTAAGGGGACAGACTCTGGATGTGAGTCTTAGTTTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212684.2 |
||
| 3UTR-3UTR CAA 90 bp | TGTAAAGGATCCAGGTTCAGTTCCCAGGACCCACACAGTAGCTCACATCCATCCCCTGTGGAGAGTTTTTaGGTATCCAATAACTTTTTC | + |
|
Preference number: 3 (lower is better) Translates to: CKGSRFSSQDPHSSSHPSPVESF*VSNNFF Trigger: GAAAAAGTTATTGGATACCAAAAAACTCTCCACAGG...GGATGGATGTGAGCTACTGTGTGGGTCCTGGGAACTGAACCTGGATCCTTTACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
||
| 3UTR GCA 72 bp | ACCCTAAAAACTTCATCTCTATTAGCAAACTGGCATTaGCCTGGCGTGGATTCCAACAGTAGGAGGATTCAG | + |
|
Preference number: 3 (lower is better) Translates to: TLKTSSLLANWH*PGVDSNSRRIQ Trigger: CTGAATCCTCCTACTGTTGGAATCCACGCCAGGGCAATGCCAGTTTGCTAATAGAGATGAAGTTTTTAGGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
||
| 3UTR GCA 72 bp | CAGGCATACACAACATGTCCACAGTTGTACACCGCTTaGTCATTAGCCTTTGAGACTGACAAAGGATCAGAT | + |
|
Preference number: 3 (lower is better) Translates to: QAYTTCPQLYTA*SLAFETDKGSD Trigger: ATCTGATCCTTTGTCAGTCTCAAAGGCTAATGAGCAAGCGGTGTACAACTGTGGACATGTTGTGTATGCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
||
| 3UTR CCA 72 bp | TCACTGGTTAATAACTTGCTCTTGCAGGGAGAGGACTaGGATTCAATTCCCAGGATCCATACAATGGCTTAC | + |
|
Preference number: 3 (lower is better) Translates to: SLVNNLLLQGED*DSIPRIHTMAY Trigger: GTAAGCCATTGTATGGATCCTGGGAATTGAATCCCAGTCCTCTCCCTGCAAGAGCAAGTTATTAACCAGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
||
| 3UTR CCA 72 bp | GAGAGGACTGGGATTCAATTCCCAGGATCCATACAATaGCTTACAGCTATCTTTAACTTCAGTTCTAGGGTA | + |
|
Preference number: 3 (lower is better) Translates to: ERTGIQFPGSIQ*LTAIFNFSSRV Trigger: TACCCTAGAACTGAAGTTAAAGATAGCTGTAAGCCATTGTATGGATCCTGGGAATTGAATCCCAGTCCTCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
||
| 3UTR CCA 72 bp | GTAAACCCTTCGGATACGGCAGTTTGCATGGATCTGTaGAGAAAGACTCACTTTGACAGGCTAAATACAATT | + |
|
Preference number: 3 (lower is better) Translates to: VNPSDTAVCMDL*RKTHFDRLNTI Trigger: AATTGTATTTAGCCTGTCAAAGTGAGTCTTTCTCCACAGATCCATGCAAACTGCCGTATCCGAAGGGTTTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
||
| 3UTR CCA 72 bp | ACTTTTTCTGGCCTTCTAAAGCACCAGACACGAACATaGTACACAGATGTACTTGTAGGCAAAACATTCACA | + |
|
Preference number: 3 (lower is better) Translates to: TFSGLLKHQTRT*YTDVLVGKTFT Trigger: TGTGAATGTTTTGCCTACAAGTACATCTGTGTACCATGTTCGTGTCTGGTGCTTTAGAAGGCCAGAAAAAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
||
| CDS-3UTR TCA 90 bp | TGCATGGTCACTGGTGTCCATGACAAGGACACAGTGGTCAGCGAGCCACAGCACCCGCCGGGTGAAATCTaGCAAGTTGAACTGAATCTG | + |
|
Preference number: 4 (lower is better) Translates to: CMVTGVHDKDTVVSEPQHPPGEI*QVELNL Trigger: CAGATTCAGTTCAACTTGTCAGATTTCACCCGGCGG...GTGCTGTGGCTCGCTGACCACTGTGTCCTTGTCATGGACACCAGTGACCATGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034249.8 ENSMUST00000213086.2 |
||
| CDS-3UTR CCA 90 bp | GAACACAACTGTGCATGGTCACTGGTGTCCATGACAAGGACACAGTGGTCAGCGATGGGACTCCCTGTGTaGAAGGTGCAGTACCTGCAC | + |
|
Preference number: 4 (lower is better) Translates to: EHNCAWSLVSMTRTQWSAMGLPV*KVQYLH Trigger: GTGCAGGTACTGCACCTTCCACACAGGGAGTCCCAT...CGCTGACCACTGTGTCCTTGTCATGGACACCAGTGACCATGCACAGTTGTGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
||
| 3UTR CAA 72 bp | CTTGGGGTCCGCAGGACACGTGATGTATGTGGTACCTaGATGAAGGTTGGCTCTAGCTGGATGCACTCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: LGVRRTRDVCGT*MKVGSSWMHSS Trigger: TGAGGAGTGCATCCAGCTAGAGCCAACCTTCATCAAGGTACCACATACATCACGTGTCCTGCGGACCCCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212131.2 |
||
| CDS-3UTR TCA 90 bp | CAACTGTGCATGGTCACTGGTGTCCATGACAAGGACACAGTGGTCAGCGAGCCATCTGACAAGTTGAACTaGATCTGGTTCCAGCCATCA | + |
|
Preference number: 4 (lower is better) Translates to: QLCMVTGVHDKDTVVSEPSDKLN*IWFQPS Trigger: TGATGGCTGGAACCAGATTCAGTTCAACTTGTCAGA...TGGCTCGCTGACCACTGTGTCCTTGTCATGGACACCAGTGACCATGCACAGTTG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034249.8 ENSMUST00000213086.2 |
||
| CDS-3UTR GCA 90 bp | GACTTAGAATGCAAGGAACACAACTGTGCATGGTCACTGGTGTCCATGACAAGGAGATCTGCAGGGGCTTaGTGCCGATGCTGTAGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: DLECKEHNCAWSLVSMTRRSAGA*CRCCRG Trigger: TCCTCTACAGCATCGGCAGCAAGCCCCTGCAGATCT...CCTTGTCATGGACACCAGTGACCATGCACAGTTGTGTTCCTTGCATTCTAAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
||
| CDS-3UTR GCA 90 bp | TTAGAATGCAAGGAACACAACTGTGCATGGTCACTGGTGTCCATGACAAGGACAGGGGCTTGCTGCCGATaGTGTAGAGGATGGAAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: LECKEHNCAWSLVSMTRTGACCR*CRGWKG Trigger: TCCTTTCCATCCTCTACAGCATCGGCAGCAAGCCCC...TGTCCTTGTCATGGACACCAGTGACCATGCACAGTTGTGTTCCTTGCATTCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
||
| 3UTR CAA 72 bp | GTCTGTCTGAGAAGTAAACCCTTCGGATACGGCAGTTaGCATGGATCTGCACTCTCAGGGTCTCGATGTAGT | + |
|
Preference number: 4 (lower is better) Translates to: VCLRSKPFGYGS*HGSALSGSRCS Trigger: ACTACATCGAGACCCTGAGAGTGCAGATCCATGCAAACTGCCGTATCCGAAGGGTTTACTTCTCAGACAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212684.2 |
||
| CDS-3UTR GCA 90 bp | ACAGTGGTCAGCGAGCCACAGCACAGTGGATTATTTAAATGTTTTTGCATGGTCGGGGCTTGCTGCCGATaGTGTAGAGGATGGAAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: TVVSEPQHSGLFKCFCMVGACCR*CRGWKG Trigger: TCCTTTCCATCCTCTACAGCATCGGCAGCAAGCCCC...GACCATGCAAAAACATTTAAATAATCCACTGTGCTGTGGCTCGCTGACCACTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
||
| CDS-3UTR GCA 90 bp | TTAGAATGCAAGGAACACAACTGTGCATGGTCACTGGTGTCCATGACAAGGACATTTTTGTCCCAGATCTaGAGGGGCTTGCTGCCGATG | + |
|
Preference number: 4 (lower is better) Translates to: LECKEHNCAWSLVSMTRTFLSQI*RGLLPM Trigger: CATCGGCAGCAAGCCCCTGCAGATCTGGGACAAAAA...TGTCCTTGTCATGGACACCAGTGACCATGCACAGTTGTGTTCCTTGCATTCTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
||
| CDS-3UTR GCA 90 bp | TCAGCGAGCCACAGCACAGTGGATTATTTAAATGTTTTTGCATGGTCTCCATGTAGATCTGCAGGGGCTTaGTGCCGATGCTGTAGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: SASHSTVDYLNVFAWSPCRSAGA*CRCCRG Trigger: TCCTCTACAGCATCGGCAGCAAGCCCCTGCAGATCT...ACATGGAGACCATGCAAAAACATTTAAATAATCCACTGTGCTGTGGCTCGCTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
||
| CDS-3UTR GCA 90 bp | TTCCTTTTTAAACTAAGACTCACATCCAGAGTCTGTCCCCTTAGCTGCTATCCAGGAAGGTGCAGTACCTaGACTCTCAGGGTCTCGATG | + |
|
Preference number: 4 (lower is better) Translates to: FLFKLRLTSRVCPLSCYPGRCST*TLRVSM Trigger: CATCGAGACCCTGAGAGTGCAGGTACTGCACCTTCC...TGGATAGCAGCTAAGGGGACAGACTCTGGATGTGAGTCTTAGTTTAAAAAGGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
||
| CDS-3UTR TCA 90 bp | ACAGTGGTCAGCGAGCCACAGCACAGTGGATTATTTAAATGTTTTTGCATGGTCCAAGGAAAGGCAGTTTaGTCCCCAGTGTCTTCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: TVVSEPQHSGLFKCFCMVQGKAV*SPVSSW Trigger: CCAAGAAGACACTGGGGATCAAACTGCCTTTCCTTG...GACCATGCAAAAACATTTAAATAATCCACTGTGCTGTGGCTCGCTGACCACTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
||
| CDS-3UTR TCA 90 bp | TTCCTTTTTAAACTAAGACTCACATCCAGAGTCTGTCCCCTTAGCTGCTATCCACAAGGAAAGGCAGTTTaGTCCCCAGTGTCTTCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: FLFKLRLTSRVCPLSCYPQGKAV*SPVSSW Trigger: CCAAGAAGACACTGGGGATCAAACTGCCTTTCCTTG...TGGATAGCAGCTAAGGGGACAGACTCTGGATGTGAGTCTTAGTTTAAAAAGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
||
| CDS-3UTR TCA 90 bp | TTTTCTGGCCTTCTAAAGCACCAGACACGAACATGGTACACAGATGTACTTGTACAAGGAAAGGCAGTTTaGTCCCCAGTGTCTTCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: FSGLLKHQTRTWYTDVLVQGKAV*SPVSSW Trigger: CCAAGAAGACACTGGGGATCAAACTGCCTTTCCTTG...TACAAGTACATCTGTGTACCATGTTCGTGTCTGGTGCTTTAGAAGGCCAGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
||
| CDS-3UTR GCA 90 bp | TCTCCATGTAGTTTCCTTTTTAAACTAAGACTCACATCCAGAGTCTGTCCCCTTTTTTTGTCCCAGATCTaGAGGGGCTTGCTGCCGATG | + |
|
Preference number: 4 (lower is better) Translates to: SPCSFLFKLRLTSRVCPLFLSQI*RGLLPM Trigger: CATCGGCAGCAAGCCCCTGCAGATCTGGGACAAAAA...AAGGGGACAGACTCTGGATGTGAGTCTTAGTTTAAAAAGGAAACTACATGGAGA 46% GC, longest homopolymer 7 nt, total homopolymer stretches 20 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
||
| CDS-3UTR GCA 90 bp | CACAGCACAGTGGATTATTTAAATGTTTTTGCATGGTCTCCATGTAGTTTCCTTGGGGCTTGCTGCCGATaGTGTAGAGGATGGAAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: HSTVDYLNVFAWSPCSFLGACCR*CRGWKG Trigger: TCCTTTCCATCCTCTACAGCATCGGCAGCAAGCCCC...AAGGAAACTACATGGAGACCATGCAAAAACATTTAAATAATCCACTGTGCTGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
||
| CDS-3UTR GCA 90 bp | CACAGCACAGTGGATTATTTAAATGTTTTTGCATGGTCTCCATGTAGTTTCCTTTTTTTGTCCCAGATCTaGAGGGGCTTGCTGCCGATG | + |
|
Preference number: 4 (lower is better) Translates to: HSTVDYLNVFAWSPCSFLFLSQI*RGLLPM Trigger: CATCGGCAGCAAGCCCCTGCAGATCTGGGACAAAAA...AAGGAAACTACATGGAGACCATGCAAAAACATTTAAATAATCCACTGTGCTGTG 43% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
||
| CDS-3UTR CCA 90 bp | TTAGAATGCAAGGAACACAACTGTGCATGGTCACTGGTGTCCATGACAAGGACAGTGATTCTTTTGATGTaGCCATTCCGTACCTTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: LECKEHNCAWSLVSMTRTVILLM*PFRTFL Trigger: CAAAAAGGTACGGAATGGCCACATCAAAAGAATCAC...TGTCCTTGTCATGGACACCAGTGACCATGCACAGTTGTGTTCCTTGCATTCTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034249.8 ENSMUST00000213086.2 |
||
| CDS-3UTR CCA 90 bp | TTTTCTGGCCTTCTAAAGCACCAGACACGAACATGGTACACAGATGTACTTGTAGTGATTCTTTTGATGTaGCCATTCCGTACCTTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: FSGLLKHQTRTWYTDVLVVILLM*PFRTFL Trigger: CAAAAAGGTACGGAATGGCCACATCAAAAGAATCAC...TACAAGTACATCTGTGTACCATGTTCGTGTCTGGTGCTTTAGAAGGCCAGAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
||
| CDS-3UTR CAA 90 bp | GAACACAACTGTGCATGGTCACTGGTGTCCATGACAAGGACACAGTGGTCAGCGGTACAGATGAAGGGCTaGACTCGAGTGGTACTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: EHNCAWSLVSMTRTQWSAVQMKG*TRVVLW Trigger: CCAGAGTACCACTCGAGTCAAGCCCTTCATCTGTAC...CGCTGACCACTGTGTCCTTGTCATGGACACCAGTGACCATGCACAGTTGTGTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034249.8 ENSMUST00000213086.2 |
||
| CDS GCA 90 bp | ACACGTGATGTATGTGGTACTTTTTGTCCCAGATCTGCAGGGGCTTaGTGCCGATGCTGTAGAGGATGGAAAGGAAGCCACTCTGGAACG | + |
|
Preference number: 5 (lower is better) Translates to: TRDVCGTFCPRSAGA*CRCCRGWKGSHSGT Trigger: CGTTCCAGAGTGGCTTCCTTTCCATCCTCTACAGCATCGGCAGCAAGCCCCTGCAGATCTGGGACAAAAAGTACCACATACATCACGTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000212684.2 |
||
| CDS-3UTR CAA 90 bp | TCAGCGAGCCACAGCACAGTGGATTATTTAAATGTTTTTGCATGGTCTCCATGTGTACAGATGAAGGGCTaGACTCGAGTGGTACTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: SASHSTVDYLNVFAWSPCVQMKG*TRVVLW Trigger: CCAGAGTACCACTCGAGTCAAGCCCTTCATCTGTAC...ACATGGAGACCATGCAAAAACATTTAAATAATCCACTGTGCTGTGGCTCGCTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034249.8 ENSMUST00000213086.2 |
||
| CDS-3UTR CAA 90 bp | GAGTGGTACTCTGGTAGTTACTTGCTCGAAACCTTCGACGAACGTTTTTGTCATACAAGGAAAGGCAGTTaGATCCCCAGTGTCTTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: EWYSGSYLLETFDERFCHTRKGS*IPSVFL Trigger: CAAGAAGACACTGGGGATCAAACTGCCTTTCCTTGT...ATGACAAAAACGTTCGTCGAAGGTTTCGAGCAAGTAACTACCAGAGTACCACTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000212684.2 |
||
| CDS-3UTR CAA 90 bp | TTCCTTTTTAAACTAAGACTCACATCCAGAGTCTGTCCCCTTAGCTGCTATCCAAGGGACTGGATGTCATaGTCAGTGATTCTTTTGATG | + |
|
Preference number: 5 (lower is better) Translates to: FLFKLRLTSRVCPLSCYPRDWMS*SVILLM Trigger: CATCAAAAGAATCACTGACAATGACATCCAGTCCCT...TGGATAGCAGCTAAGGGGACAGACTCTGGATGTGAGTCTTAGTTTAAAAAGGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000034249.8 ENSMUST00000213086.2 |
||
| CDS-3UTR CAA 90 bp | TTTAATGGCTTCTGTATAGTGCTTCATGACTTGGGAGGCAGAGGTAAGCAGATTAGGGACTGGATGTCATaGTCAGTGATTCTTTTGATG | + |
|
Preference number: 5 (lower is better) Translates to: FNGFCIVLHDLGGRGKQIRDWMS*SVILLM Trigger: CATCAAAAGAATCACTGACAATGACATCCAGTCCCT...AATCTGCTTACCTCTGCCTCCCAAGTCATGAAGCACTATACAGAAGCCATTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212131.2 |
||
| CDS-3UTR CAA 90 bp | TCTCCATGTAGTTTCCTTTTTAAACTAAGACTCACATCCAGAGTCTGTCCCCTTCTTCGACGAACGTTTTaGTCATCTAGTACCTGGACT | + |
|
Preference number: 5 (lower is better) Translates to: SPCSFLFKLRLTSRVCPLLRRTF*SSSTWT Trigger: AGTCCAGGTACTAGATGACAAAAACGTTCGTCGAAG...AAGGGGACAGACTCTGGATGTGAGTCTTAGTTTAAAAAGGAAACTACATGGAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000034249.8 ENSMUST00000213086.2 |
||
| CDS-3UTR CAA 90 bp | CTCTCAGAAGCCTTCTCATGGTACCCTAAAAACTTCATCTCTATTAGCAAACTGTACTCTGGTAGTTACTaGCTCGAAACCTTCGACGAA | + |
|
Preference number: 5 (lower is better) Translates to: LSEAFSWYPKNFISISKLYSGSY*LETFDE Trigger: TTCGTCGAAGGTTTCGAGCAAGTAACTACCAGAGTA...CAGTTTGCTAATAGAGATGAAGTTTTTAGGGTACCATGAGAAGGCTTCTGAGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
||
| CDS-3UTR CAA 90 bp | CACAGCACAGTGGATTATTTAAATGTTTTTGCATGGTCTCCATGTAGTTTCCTTACAAGGAAAGGCAGTTaGATCCCCAGTGTCTTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: HSTVDYLNVFAWSPCSFLTRKGS*IPSVFL Trigger: CAAGAAGACACTGGGGATCAAACTGCCTTTCCTTGT...AAGGAAACTACATGGAGACCATGCAAAAACATTTAAATAATCCACTGTGCTGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000212684.2 ENSMUST00000213086.2 |
||
| CDS-3UTR CAA 90 bp | AGCCACAGCACAGTGGATTATTTAAATGTTTTTGCATGGTCTCCATGTAGTTTCCTTCGACGAACGTTTTaGTCATCTAGTACCTGGACT | + |
|
Preference number: 5 (lower is better) Translates to: SHSTVDYLNVFAWSPCSFLRRTF*SSSTWT Trigger: AGTCCAGGTACTAGATGACAAAAACGTTCGTCGAAG...GAAACTACATGGAGACCATGCAAAAACATTTAAATAATCCACTGTGCTGTGGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034249.8 ENSMUST00000213086.2 |
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| CDS-3UTR CAA 90 bp | AGCCACAGCACAGTGGATTATTTAAATGTTTTTGCATGGTCTCCATGTAGTTTCAGGGACTGGATGTCATaGTCAGTGATTCTTTTGATG | + |
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Preference number: 5 (lower is better) Translates to: SHSTVDYLNVFAWSPCSFRDWMS*SVILLM Trigger: CATCAAAAGAATCACTGACAATGACATCCAGTCCCT...GAAACTACATGGAGACCATGCAAAAACATTTAAATAATCCACTGTGCTGTGGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034249.8 ENSMUST00000213086.2 |
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| CDS-3UTR CAA 90 bp | CACAGCACAGTGGATTATTTAAATGTTTTTGCATGGTCTCCATGTAGTTTCCTTTACTCTGGTAGTTACTaGCTCGAAACCTTCGACGAA | + |
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Preference number: 5 (lower is better) Translates to: HSTVDYLNVFAWSPCSFLYSGSY*LETFDE Trigger: TTCGTCGAAGGTTTCGAGCAAGTAACTACCAGAGTA...AAGGAAACTACATGGAGACCATGCAAAAACATTTAAATAATCCACTGTGCTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034249.8 ENSMUST00000213086.2 |
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| CDS CCA 72 bp | CAGTTAGCCAACCAGAGTGTCCTAAAGCCCCCAGTATaGGACTCCCTGTGTGGAAGGTGCAGTACCTGCACT | + |
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Preference number: 6 (lower is better) Translates to: QLANQSVLKPPV*DSLCGRCSTCT Trigger: AGTGCAGGTACTGCACCTTCCACACAGGGAGTCCCATACTGGGGGCTTTAGGACACTCTGGTTGGCTAACTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213086.2 |
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| CDS GCA 72 bp | CATTCCGTACCTTTTTGTCCCAGATCTGCAGGGGCTTaGTGCCGATGCTGTAGAGGATGGAAAGGAAGCCAC | + |
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Preference number: 6 (lower is better) Translates to: HSVPFCPRSAGA*CRCCRGWKGSH Trigger: GTGGCTTCCTTTCCATCCTCTACAGCATCGGCAGCAAGCCCCTGCAGATCTGGGACAAAAAGGTACGGAATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000211908.2 ENSMUST00000213086.2 |
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| CDS GCA 72 bp | ACTTTTTGTCCCAGATCTGCAGGGGCTTGCTGCCGATaGTGTAGAGGATGGAAAGGAAGCCACTCTGGAACG | + |
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Preference number: 6 (lower is better) Translates to: TFCPRSAGACCR*CRGWKGSHSGT Trigger: CGTTCCAGAGTGGCTTCCTTTCCATCCTCTACAGCATCGGCAGCAAGCCCCTGCAGATCTGGGACAAAAAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000212684.2 |
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| CDS GCA 72 bp | GTATGTGGTACTTTTTGTCCCAGATCTGCAGGGGCTTaGTGCCGATGCTGTAGAGGATGGAAAGGAAGCCAC | + |
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Preference number: 6 (lower is better) Translates to: VCGTFCPRSAGA*CRCCRGWKGSH Trigger: GTGGCTTCCTTTCCATCCTCTACAGCATCGGCAGCAAGCCCCTGCAGATCTGGGACAAAAAGTACCACATAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000212684.2 |
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| CDS CAA 72 bp | ATGACAAGGAAAGGCAGTTTGATCCCCAGTGTCTTCTaGGGGTCCGCAGGACACGTGATGTATGTGGTACTG | + |
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Preference number: 6 (lower is better) Translates to: MTRKGSLIPSVF*GSAGHVMYVVL Trigger: CAGTACCACATACATCACGTGTCCTGCGGACCCCAAGAAGACACTGGGGATCAAACTGCCTTTCCTTGTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000211908.2 ENSMUST00000213086.2 |
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| CDS CAA 72 bp | ATGACAAGGAAAGGCAGTTTGATCCCCAGTGTCTTCTaGGGGTCCGCAGGACACGTGATGTATGTGGTACTT | + |
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Preference number: 6 (lower is better) Translates to: MTRKGSLIPSVF*GSAGHVMYVVL Trigger: AAGTACCACATACATCACGTGTCCTGCGGACCCCAAGAAGACACTGGGGATCAAACTGCCTTTCCTTGTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000212684.2 |
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| CDS CAA 72 bp | AGCACCAGGGACTGGATGTCATTGTCAGTGATTCTTTaGATGTGGCCATTCCGTACCTTTTTGTCCCAGATC | + |
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Preference number: 6 (lower is better) Translates to: STRDWMSLSVIL*MWPFRTFLSQI Trigger: GATCTGGGACAAAAAGGTACGGAATGGCCACATCAAAAGAATCACTGACAATGACATCCAGTCCCTGGTGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000034249.8 ENSMUST00000211908.2 ENSMUST00000213086.2 |
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