Pregenerated sensors for CFAP161 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000011154Ensembl transcript IDs: ENSMUST00000011298.14, ENSMUST00000119134.8, ENSMUST00000149671.2
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTCTTCTGGACGTTACCAGGTGAGGCCATTAGCTCCTGCAGGATCTaGCCTGATATTTCTGCCTGCTGCCTGCCAGTCCAGGGACGACCC | + |
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Preference number: 1 (lower is better) Translates to: FFWTLPGEAISSCRI*PDISACCLPVQGRP Trigger: GGGTCGTCCCTGGACTGGCAGGCAGCAGGCAGAAATATCAGGTCAGATCCTGCAGGAGCTAATGGCCTCACCTGGTAACGTCCAGAAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR GCA 90 bp | CCACCTGTACGCCTGGTATGTCACTATGTATTGATGCCCATGGCCTaGTCCAAGGCGCGCGTATCCTCTGTGATGGGTTTGGAGATGTCT | + |
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Preference number: 1 (lower is better) Translates to: PPVRLVCHYVLMPMA*SKARVSSVMGLEMS Trigger: AGACATCTCCAAACCCATCACAGAGGATACGCGCGCCTTGGAGCAGGCCATGGGCATCAATACATAGTGACATACCAGGCGTACAGGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR GCA 90 bp | CATCTTGTGGCCACTGTAGGTAACTGCATGCTAAATCAGGAAGGATaGCTGATTGCCAGCCGCCCCCAATTCTGTTCTTCAACATACTTT | + |
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Preference number: 1 (lower is better) Translates to: HLVATVGNCMLNQEG*LIASRPQFCSSTYF Trigger: AAAGTATGTTGAAGAACAGAATTGGGGGCGGCTGGCAATCAGGCATCCTTCCTGATTTAGCATGCAGTTACCTACAGTGGCCACAAGATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR TCA 90 bp | GACTGTTCATTTCTTTTAAGTGGAAGAGTTGATGAGATCAGAGCCTaGGAGGCCACCTGTACGCCTGGTATGTCACTATGTATTGATGCC | + |
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Preference number: 1 (lower is better) Translates to: DCSFLLSGRVDEIRA*EATCTPGMSLCIDA Trigger: GGCATCAATACATAGTGACATACCAGGCGTACAGGTGGCCTCTCAGGCTCTGATCTCATCAACTCTTCCACTTAAAAGAAATGAACAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR TCA 90 bp | GATCCAGATGAATGTCCATCAAATACCCAAGGCCAAGCTTTAACTTaGAACTTGAGCACATGCCCTCCCAAATCCACTCACAGCAGGTTT | + |
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Preference number: 1 (lower is better) Translates to: DPDECPSNTQGQALT*NLSTCPPKSTHSRF Trigger: AAACCTGCTGTGAGTGGATTTGGGAGGGCATGTGCTCAAGTTTCAAGTTAAAGCTTGGCCTTGGGTATTTGATGGACATTCATCTGGATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR TCA 90 bp | TCCAGTAACCAGCATCCACTGGTTCTTGGGTTTTTCTACTTTGTGTaGGTCCAGATATGTGTGAGCTACAACCTCCATTTCCTTCCCAAA | + |
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Preference number: 1 (lower is better) Translates to: SSNQHPLVLGFFYFV*VQICVSYNLHFLPK Trigger: TTTGGGAAGGAAATGGAGGTTGTAGCTCACACATATCTGGACTCACACAAAGTAGAAAAACCCAAGAACCAGTGGATGCTGGTTACTGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR TCA 90 bp | TGTGGTATTCCTTTTAATGTTGTGTTCATGGAGTTCTGCACCTACTaGCAAACTGCTTGGGGCACAGCCAAGAAAGACTGTTCATTTCTT | + |
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Preference number: 1 (lower is better) Translates to: CGIPFNVVFMEFCTY*QTAWGTAKKDCSFL Trigger: AAGAAATGAACAGTCTTTCTTGGCTGTGCCCCAAGCAGTTTGTCAGTAGGTGCAGAACTCCATGAACACAACATTAAAAGGAATACCACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| 3UTR CCA 90 bp | AATTCCAAGGCAAAGCTACATCTCCTAACTACACATTGTTCTACATaGAAGAAAATTAGGGGAGGAAACAACAGTGTCGAAACATCCGTA | + |
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Preference number: 1 (lower is better) Translates to: NSKAKLHLLTTHCST*KKIRGGNNSVETSV Trigger: TACGGATGTTTCGACACTGTTGTTTCCTCCCCTAATTTTCTTCCATGTAGAACAATGTGTAGTTAGGAGATGTAGCTTTGCCTTGGAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR CAA 90 bp | TCAGAGCCTGAGAGGCCACCTGTACGCCTGGTATGTCACTATGTATaGATGCCCATGGCCTGCTCCAAGGCGCGCGTATCCTCTGTGATG | + |
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Preference number: 2 (lower is better) Translates to: SEPERPPVRLVCHYV*MPMACSKARVSSVM Trigger: CATCACAGAGGATACGCGCGCCTTGGAGCAGGCCATGGGCATCAATACATAGTGACATACCAGGCGTACAGGTGGCCTCTCAGGCTCTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR TCA 90 bp | CTAAACACAGCTTTGCAAAGGAGCACGGGCTTCCCAGGTCCTGCCAAGCAAGGGCGCGCGTATCCTCTGTaGTGGGTTTGGAGATGTCTA | + |
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Preference number: 2 (lower is better) Translates to: LNTALQRSTGFPGPAKQGRAYPL*WVWRCL Trigger: TAGACATCTCCAAACCCATCACAGAGGATACGCGCG...CCCTTGCTTGGCAGGACCTGGGAAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR GCA 90 bp | TCTTTATTGCCTAAACACAGCTTTGCAAAGGAGCACGGGCTTCCCAGGTCCTGCCCAAGCAAGGGGCGCTaGATGGGGGCGCTAAGTTCT | + |
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Preference number: 2 (lower is better) Translates to: SLLPKHSFAKEHGLPRSCPSKGR*MGALSS Trigger: AGAACTTAGCGCCCCCATGCAGCGCCCCTTGCTTGG...GCAGGACCTGGGAAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAGGCAATAAAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| 3UTR CAA 90 bp | ATGCCCATGGCCTGCTCCAAGGCGCGCGTATCCTCTGTGATGGGTTaGGAGATGTCTAGCATGGTGTTCGACTTGTTCCTGGGATTTCCA | + |
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Preference number: 2 (lower is better) Translates to: MPMACSKARVSSVMG*EMSSMVFDLFLGFP Trigger: TGGAAATCCCAGGAACAAGTCGAACACCATGCTAGACATCTCCAAACCCATCACAGAGGATACGCGCGCCTTGGAGCAGGCCATGGGCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR GCA 90 bp | GAGCACATGCCCTCCCAAATCCACTCACAGCAGGTTTTACATATGTTTATGTGTGGGCTTCCCAGGTCCTaGCAAGCAAGGGGCGCTGCA | + |
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Preference number: 2 (lower is better) Translates to: EHMPSQIHSQQVLHMFMCGLPRS*QARGAA Trigger: TGCAGCGCCCCTTGCTTGGCAGGACCTGGGAAGCCC...ACACATAAACATATGTAAAACCTGCTGTGAGTGGATTTGGGAGGGCATGTGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR TCA 90 bp | CAGGTGAGGCCATTAGCTCCTGCAGGATCTGACCTGATATTTCTGCCTGCTGCCGAGTCCAGATATGTGTaGGCTACAACCTCCATTTCC | + |
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Preference number: 2 (lower is better) Translates to: QVRPLAPAGSDLIFLPAAESRYV*ATTSIS Trigger: GGAAATGGAGGTTGTAGCTCACACATATCTGGACTC...GGCAGCAGGCAGAAATATCAGGTCAGATCCTGCAGGAGCTAATGGCCTCACCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR GCA 90 bp | GATTGCCAGCCGCCCCCAATTCTGTTCTTCAACATACTTTGCAATTATGAAGCTTTTCTGCCTGCTGCCTaGCAGTCCAGGGACGACCCC | + |
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Preference number: 2 (lower is better) Translates to: DCQPPPILFFNILCNYEAFLPAA*QSRDDP Trigger: GGGGTCGTCCCTGGACTGGCAGGCAGCAGGCAGAAA...AGCTTCATAATTGCAAAGTATGTTGAAGAACAGAATTGGGGGCGGCTGGCAATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR GCA 90 bp | ATGCCCTCCCAAATCCACTCACAGCAGGTTTTACATATGTTTATGTGTCAGGCAACATCCCAGAGGACCTaGCTCTGCCCCCAGGAGGTC | + |
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Preference number: 2 (lower is better) Translates to: MPSQIHSQQVLHMFMCQATSQRT*LCPQEV Trigger: GACCTCCTGGGGGCAGAGGCAGGTCCTCTGGGATGT...TGCCTGACACATAAACATATGTAAAACCTGCTGTGAGTGGATTTGGGAGGGCAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR TCA 90 bp | GCAGGTATAACCTTTCCCAGAGAGATTGTGTTGACGGGTGACATTGCAGCCTGTAGCTCCTGCAGGATCTaGCCTGATATTTCTGCCTGC | + |
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Preference number: 2 (lower is better) Translates to: AGITFPREIVLTGDIAACSSCRI*PDISAC Trigger: GCAGGCAGAAATATCAGGTCAGATCCTGCAGGAGCT...ACAGGCTGCAATGTCACCCGTCAACACAATCTCTCTGGGAAAGGTTATACCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR TCA 90 bp | CGTTACCAGGTGAGGCCATTAGCTCCTGCAGGATCTGACCTGATATTTCTGCCTTATGTCACTATGTATTaGTGCCCATGGCCTGCTCCA | + |
|
Preference number: 2 (lower is better) Translates to: RYQVRPLAPAGSDLIFLPYVTMY*CPWPAP Trigger: TGGAGCAGGCCATGGGCATCAATACATAGTGACATA...AGGCAGAAATATCAGGTCAGATCCTGCAGGAGCTAATGGCCTCACCTGGTAACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR TCA 90 bp | ATGCCCTCCCAAATCCACTCACAGCAGGTTTTACATATGTTTATGTGTCAGGCACCCCAGGAGGTCTTGTaGCTCCCTTCCCTAACTGAG | + |
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Preference number: 2 (lower is better) Translates to: MPSQIHSQQVLHMFMCQAPQEVL*LPSLTE Trigger: CTCAGTTAGGGAAGGGAGTCACAAGACCTCCTGGGG...TGCCTGACACATAAACATATGTAAAACCTGCTGTGAGTGGATTTGGGAGGGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR TCA 90 bp | TCTTTATTGCCTAAACACAGCTTTGCAAAGGAGCACGGGCTTCCCAGGTCCTGCTTTTTCTACTTTGTGTaGGTCCAGATATGTGTGAGC | + |
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Preference number: 2 (lower is better) Translates to: SLLPKHSFAKEHGLPRSCFFYFV*VQICVS Trigger: GCTCACACATATCTGGACTCACACAAAGTAGAAAAA...GCAGGACCTGGGAAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAGGCAATAAAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR TCA 90 bp | CGTTACCAGGTGAGGCCATTAGCTCCTGCAGGATCTGACCTGATATTTCTGCCTCCTTGGAGTGTGTTTTaGAAAGTTTCTTTGATCCTT | + |
|
Preference number: 2 (lower is better) Translates to: RYQVRPLAPAGSDLIFLPPWSVF*KVSLIL Trigger: AAGGATCAAAGAAACTTTTCAAAACACACTCCAAGG...AGGCAGAAATATCAGGTCAGATCCTGCAGGAGCTAATGGCCTCACCTGGTAACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR CCA 90 bp | CCCAAATCCACTCACAGCAGGTTTTACATATGTTTATGTGTCAGGCACCATATTGTAACCAGCATCCACTaGTTCTTGGGTTTTTCTACT | + |
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Preference number: 2 (lower is better) Translates to: PKSTHSRFYICLCVRHHIVTSIH*FLGFST Trigger: AGTAGAAAAACCCAAGAACCAGTGGATGCTGGTTAC...AATATGGTGCCTGACACATAAACATATGTAAAACCTGCTGTGAGTGGATTTGGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR CCA 90 bp | GAGCACATGCCCTCCCAAATCCACTCACAGCAGGTTTTACATATGTTTATGTGTACACATTGTTCTACATaGAAGAAAATTAGGGGAGGA | + |
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Preference number: 2 (lower is better) Translates to: EHMPSQIHSQQVLHMFMCTHCST*KKIRGG Trigger: TCCTCCCCTAATTTTCTTCCATGTAGAACAATGTGT...ACACATAAACATATGTAAAACCTGCTGTGAGTGGATTTGGGAGGGCATGTGCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR GCA 72 bp | AACAAGGCCAGTAAGGGGCAGACGTGGCTTTGGAAATaGACCTCTTGGGGAGTCCTGAGCCTGAGACTCGGG | + |
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Preference number: 3 (lower is better) Translates to: NKASKGQTWLWK*TSWGVLSLRLG Trigger: CCCGAGTCTCAGGCTCAGGACTCCCCAAGAGGTGCATTTCCAAAGCCACGTCTGCCCCTTACTGGCCTTGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR TCA 72 bp | AGAGGCCACCTGTACGCCTGGTATGTCACTATGTATTaGTGCCCATGGCCTGCTCCAAGGCGCGCGTATCCT | + |
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Preference number: 3 (lower is better) Translates to: RGHLYAWYVTMY*CPWPAPRRAYP Trigger: AGGATACGCGCGCCTTGGAGCAGGCCATGGGCATCAATACATAGTGACATACCAGGCGTACAGGTGGCCTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR GCA 72 bp | CGCCTGGTATGTCACTATGTATTGATGCCCATGGCCTaGTCCAAGGCGCGCGTATCCTCTGTGATGGGTTTG | + |
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Preference number: 3 (lower is better) Translates to: RLVCHYVLMPMA*SKARVSSVMGL Trigger: CAAACCCATCACAGAGGATACGCGCGCCTTGGAGCAGGCCATGGGCATCAATACATAGTGACATACCAGGCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR CCA 72 bp | AGTAAGGGGCAGACGTGGCTTTGGAAATGCACCTCTTaGGGAGTCCTGAGCCTGAGACTCGGGTTGGTGAAT | + |
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Preference number: 3 (lower is better) Translates to: SKGQTWLWKCTS*GVLSLRLGLVN Trigger: ATTCACCAACCCGAGTCTCAGGCTCAGGACTCCCCAAGAGGTGCATTTCCAAAGCCACGTCTGCCCCTTACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR CAA 90 bp | GGTGACATTGCAGCCTGTGGTAAAAGGTTCAAAGAGGTACCCTGGCTTCCCATATTGGAAATGCACCTCTaGGGGAGTCCTGAGCCTGAG | + |
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Preference number: 3 (lower is better) Translates to: GDIAACGKRFKEVPWLPILEMHL*GSPEPE Trigger: CTCAGGCTCAGGACTCCCCAAGAGGTGCATTTCCAA...TATGGGAAGCCAGGGTACCTCTTTGAACCTTTTACCACAGGCTGCAATGTCACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR GCA 72 bp | TGCCAGCCGCCCCCAATTCTGTTCTTCAACATACTTTaGAATTATGAAGCTGATCAGGCACCACCCCCAGGT | + |
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Preference number: 3 (lower is better) Translates to: CQPPPILFFNIL*NYEADQAPPPG Trigger: ACCTGGGGGTGGTGCCTGATCAGCTTCATAATTGCAAAGTATGTTGAAGAACAGAATTGGGGGCGGCTGGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR CAA 90 bp | CTAAACACAGCTTTGCAAAGGAGCACGGGCTTCCCAGGTCCTGCCAAGCAAGGGCTAAGTTCTTCACAATaGGGATATCAACAAAACCTG | + |
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Preference number: 3 (lower is better) Translates to: LNTALQRSTGFPGPAKQGLSSSQ*GYQQNL Trigger: CAGGTTTTGTTGATATCCCAATTGTGAAGAACTTAG...CCCTTGCTTGGCAGGACCTGGGAAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| 3UTR-3UTR CAA 90 bp | TCTTTATTGCCTAAACACAGCTTTGCAAAGGAGCACGGGCTTCCCAGGTCCTGCTTGGGTTTTTCTACTTaGTGTGAGTCCAGATATGTG | + |
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Preference number: 3 (lower is better) Translates to: SLLPKHSFAKEHGLPRSCLGFST*CESRYV Trigger: CACATATCTGGACTCACACAAAGTAGAAAAACCCAA...GCAGGACCTGGGAAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAGGCAATAAAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR CAA 90 bp | GATTGCCAGCCGCCCCCAATTCTGTTCTTCAACATACTTTGCAATTATGAAGCTGTATGTCACTATGTATaGATGCCCATGGCCTGCTCC | + |
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Preference number: 3 (lower is better) Translates to: DCQPPPILFFNILCNYEAVCHYV*MPMACS Trigger: GGAGCAGGCCATGGGCATCAATACATAGTGACATAC...AGCTTCATAATTGCAAAGTATGTTGAAGAACAGAATTGGGGGCGGCTGGCAATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR CAA 90 bp | TCTTTATTGCCTAAACACAGCTTTGCAAAGGAGCACGGGCTTCCCAGGTCCTGCCTAAGTTCTTCACAATaGGGATATCAACAAAACCTG | + |
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Preference number: 3 (lower is better) Translates to: SLLPKHSFAKEHGLPRSCLSSSQ*GYQQNL Trigger: CAGGTTTTGTTGATATCCCAATTGTGAAGAACTTAG...GCAGGACCTGGGAAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAGGCAATAAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| 3UTR TCA 72 bp | CCTTTTAATGTTGTGTTCATGGAGTTCTGCACCTACTaGCAAACTGCTTGGGGCACAGCCAAGAAAGACTGT | + |
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Preference number: 3 (lower is better) Translates to: PFNVVFMEFCTY*QTAWGTAKKDC Trigger: ACAGTCTTTCTTGGCTGTGCCCCAAGCAGTTTGTCAGTAGGTGCAGAACTCCATGAACACAACATTAAAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| 3UTR TCA 72 bp | GAATGTCCATCAAATACCCAAGGCCAAGCTTTAACTTaGAACTTGAGCACATGCCCTCCCAAATCCACTCAC | + |
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Preference number: 3 (lower is better) Translates to: ECPSNTQGQALT*NLSTCPPKSTH Trigger: GTGAGTGGATTTGGGAGGGCATGTGCTCAAGTTTCAAGTTAAAGCTTGGCCTTGGGTATTTGATGGACATTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR CAA 90 bp | CTTCTGACCTCTTTATTGCCTAAACACAGCTTTGCAAAGGAGCACGGGCTTCCCGTATTCCTTTTAATGTaGTGTTCATGGAGTTCTGCA | + |
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Preference number: 3 (lower is better) Translates to: LLTSLLPKHSFAKEHGLPVFLLM*CSWSSA Trigger: TGCAGAACTCCATGAACACAACATTAAAAGGAATAC...GGGAAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAGGCAATAAAGAGGTCAGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| 3UTR TCA 72 bp | CAGCATCCACTGGTTCTTGGGTTTTTCTACTTTGTGTaGGTCCAGATATGTGTGAGCTACAACCTCCATTTC | + |
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Preference number: 3 (lower is better) Translates to: QHPLVLGFFYFV*VQICVSYNLHF Trigger: GAAATGGAGGTTGTAGCTCACACATATCTGGACTCACACAAAGTAGAAAAACCCAAGAACCAGTGGATGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR-3UTR CAA 90 bp | ATGCCCTCCCAAATCCACTCACAGCAGGTTTTACATATGTTTATGTGTCAGGCAGTATTCCTTTTAATGTaGTGTTCATGGAGTTCTGCA | + |
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Preference number: 3 (lower is better) Translates to: MPSQIHSQQVLHMFMCQAVFLLM*CSWSSA Trigger: TGCAGAACTCCATGAACACAACATTAAAAGGAATAC...TGCCTGACACATAAACATATGTAAAACCTGCTGTGAGTGGATTTGGGAGGGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR CCA 72 bp | GCAAAGCTACATCTCCTAACTACACATTGTTCTACATaGAAGAAAATTAGGGGAGGAAACAACAGTGTCGAA | + |
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Preference number: 3 (lower is better) Translates to: AKLHLLTTHCST*KKIRGGNNSVE Trigger: TTCGACACTGTTGTTTCCTCCCCTAATTTTCTTCCATGTAGAACAATGTGTAGTTAGGAGATGTAGCTTTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| CDS-3UTR CCA 90 bp | CTAAACACAGCTTTGCAAAGGAGCACGGGCTTCCCAGGTCCTGCCAAGCAAGGGTATTCCAGGCGCAGCTaGGGATCGAGGAAGGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: LNTALQRSTGFPGPAKQGYSRRS*GSRKAA Trigger: GGCTGCCTTCCTCGATCCCCAGCTGCGCCTGGAATA...CCCTTGCTTGGCAGGACCTGGGAAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS-3UTR GCA 90 bp | AGGCACCACCCCCAGGTTAACATCCCAGAGGACCTGCCTCTGCCCCCAGGAGGTCTAGGAAGTGTCTCATaGGCTCCTCCTCCAAATAGA | + |
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Preference number: 4 (lower is better) Translates to: RHHPQVNIPEDLPLPPGGLGSVS*APPPNR Trigger: TCTATTTGGAGGAGGAGCGCATGAGACACTTCCTAG...ACCTCCTGGGGGCAGAGGCAGGTCCTCTGGGATGTTAACCTGGGGGTGGTGCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| 3UTR CAA 72 bp | GAGAGGCCACCTGTACGCCTGGTATGTCACTATGTATaGATGCCCATGGCCTGCTCCAAGGCGCGCGTATCC | + |
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Preference number: 4 (lower is better) Translates to: ERPPVRLVCHYV*MPMACSKARVS Trigger: GGATACGCGCGCCTTGGAGCAGGCCATGGGCATCAATACATAGTGACATACCAGGCGTACAGGTGGCCTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| CDS-3UTR GCA 90 bp | AGGCACCACCCCCAGGTTAACATCCCAGAGGACCTGCCTCTGCCCCCAGGAGGTTTAGATACAGCATCTTaGCTTCCAGTCCTGCTGCTA | + |
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Preference number: 4 (lower is better) Translates to: RHHPQVNIPEDLPLPPGGLDTAS*LPVLLL Trigger: TAGCAGCAGGACTGGAAGGCAAGATGCTGTATCTAA...ACCTCCTGGGGGCAGAGGCAGGTCCTCTGGGATGTTAACCTGGGGGTGGTGCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| CDS-3UTR GCA 90 bp | TGCCTAAACACAGCTTTGCAAAGGAGCACGGGCTTCCCAGGTCCTGCCAAGCAATCGAGGAAGGCAGCCTaGCAGCAGTTCAGATGGGTG | + |
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Preference number: 4 (lower is better) Translates to: CLNTALQRSTGFPGPAKQSRKAA*QQFRWV Trigger: CACCCATCTGAACTGCTGGCAGGCTGCCTTCCTCGA...TTGCTTGGCAGGACCTGGGAAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS-3UTR GCA 90 bp | TGCCTAAACACAGCTTTGCAAAGGAGCACGGGCTTCCCAGGTCCTGCCAAGCAACATCTTCGTTCCAGTTaGCCATCCGCACTCCAGGAC | + |
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Preference number: 4 (lower is better) Translates to: CLNTALQRSTGFPGPAKQHLRSS*PSALQD Trigger: GTCCTGGAGTGCGGATGGGCAACTGGAACGAAGATG...TTGCTTGGCAGGACCTGGGAAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS-3UTR CCA 90 bp | CTAAACACAGCTTTGCAAAGGAGCACGGGCTTCCCAGGTCCTGCCAAGCAAGGGTGCCAGCAGTTCAGATaGGTGACCTCATCTGTCAGA | + |
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Preference number: 4 (lower is better) Translates to: LNTALQRSTGFPGPAKQGCQQFR*VTSSVR Trigger: TCTGACAGATGAGGTCACCCATCTGAACTGCTGGCA...CCCTTGCTTGGCAGGACCTGGGAAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS-3UTR GCA 90 bp | CTAAACACAGCTTTGCAAAGGAGCACGGGCTTCCCAGGTCCTGCCAAGCAAGGGTTAGATACAGCATCTTaGCTTCCAGTCCTGCTGCTA | + |
|
Preference number: 4 (lower is better) Translates to: LNTALQRSTGFPGPAKQGLDTAS*LPVLLL Trigger: TAGCAGCAGGACTGGAAGGCAAGATGCTGTATCTAA...CCCTTGCTTGGCAGGACCTGGGAAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS-3UTR TCA 90 bp | CTAAACACAGCTTTGCAAAGGAGCACGGGCTTCCCAGGTCCTGCCAAGCAAGGGTTTTTCTACTTTGTGTaGGTCCAGATATGTGTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: LNTALQRSTGFPGPAKQGFFYFV*VQICVS Trigger: GCTCACACATATCTGGACTCACACAAAGTAGAAAAA...CCCTTGCTTGGCAGGACCTGGGAAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011298.14 |
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| 3UTR CAA 72 bp | GTGATGGGTTTGGAGATGTCTAGCATGGTGTTCGACTaGTTCCTGGGATTTCCAGTAACCAGCATCCACTGG | + |
|
Preference number: 4 (lower is better) Translates to: VMGLEMSSMVFD*FLGFPVTSIHW Trigger: CCAGTGGATGCTGGTTACTGGAAATCCCAGGAACAAGTCGAACACCATGCTAGACATCTCCAAACCCATCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| CDS-3UTR TCA 90 bp | CTTCTGACCTCTTTATTGCCTAAACACAGCTTTGCAAAGGAGCACGGGCTTCCCGAGTCCAGATATGTGTaGGCTACAACCTCCATTTCC | + |
|
Preference number: 4 (lower is better) Translates to: LLTSLLPKHSFAKEHGLPESRYV*ATTSIS Trigger: GGAAATGGAGGTTGTAGCTCACACATATCTGGACTC...GGGAAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAGGCAATAAAGAGGTCAGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011298.14 |
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| CDS-3UTR GCA 90 bp | CAAACTGCTTGGGGCACAGCCAAGAAAGACTGTTCATTTCTTTTAAGTGGAAGATCGAGGAAGGCAGCCTaGCAGCAGTTCAGATGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: QTAWGTAKKDCSFLLSGRSRKAA*QQFRWV Trigger: CACCCATCTGAACTGCTGGCAGGCTGCCTTCCTCGA...TCTTCCACTTAAAAGAAATGAACAGTCTTTCTTGGCTGTGCCCCAAGCAGTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS-3UTR TCA 90 bp | AGAGAGATTGTGTTGACGGGTGACATTGCAGCCTGTGGTAAAAGGTTCAAAGAGAGCAGTTCAGATGGGTaGCCTCATCTGTCAGAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: REIVLTGDIAACGKRFKESSSDG*PHLSES Trigger: TGACTCTGACAGATGAGGTCACCCATCTGAACTGCT...CTCTTTGAACCTTTTACCACAGGCTGCAATGTCACCCGTCAACACAATCTCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| CDS-3UTR GCA 90 bp | AGAGAGATTGTGTTGACGGGTGACATTGCAGCCTGTGGTAAAAGGTTCAAAGAGAATAGGGCACTCTCCTaGCCCTGCCAGTATACCTTA | + |
|
Preference number: 4 (lower is better) Translates to: REIVLTGDIAACGKRFKENRALS*PCQYTL Trigger: TAAGGTATACTGGCAGGGGCAGGAGAGTGCCCTATT...CTCTTTGAACCTTTTACCACAGGCTGCAATGTCACCCGTCAACACAATCTCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| CDS-3UTR CCA 90 bp | AGAGAGATTGTGTTGACGGGTGACATTGCAGCCTGTGGTAAAAGGTTCAAAGAGTGCCAGCAGTTCAGATaGGTGACCTCATCTGTCAGA | + |
|
Preference number: 4 (lower is better) Translates to: REIVLTGDIAACGKRFKECQQFR*VTSSVR Trigger: TCTGACAGATGAGGTCACCCATCTGAACTGCTGGCA...CTCTTTGAACCTTTTACCACAGGCTGCAATGTCACCCGTCAACACAATCTCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| CDS-3UTR TCA 90 bp | CAAACTGCTTGGGGCACAGCCAAGAAAGACTGTTCATTTCTTTTAAGTGGAAGACGCGCGTATCCTCTGTaGTGGGTTTGGAGATGTCTA | + |
|
Preference number: 4 (lower is better) Translates to: QTAWGTAKKDCSFLLSGRRAYPL*WVWRCL Trigger: TAGACATCTCCAAACCCATCACAGAGGATACGCGCG...TCTTCCACTTAAAAGAAATGAACAGTCTTTCTTGGCTGTGCCCCAAGCAGTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011298.14 |
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| CDS-3UTR GCA 90 bp | ACTATTCATTTTCAAAACACCATTTACTCCCTAAGGCTAGGCTCCCATCATCAAATCGGGGCGATGGTCTaGACAGCACTCACACCACAG | + |
|
Preference number: 4 (lower is better) Translates to: TIHFQNTIYSLRLGSHHQIGAMV*TALTPQ Trigger: CTGTGGTGTGAGTGCTGTGCAGACCATCGCCCCGAT...TTGATGATGGGAGCCTAGCCTTAGGGAGTAAATGGTGTTTTGAAAATGAATAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS-3UTR CCA 90 bp | CTTCTGACCTCTTTATTGCCTAAACACAGCTTTGCAAAGGAGCACGGGCTTCCCGTAACCAGCATCCACTaGTTCTTGGGTTTTTCTACT | + |
|
Preference number: 4 (lower is better) Translates to: LLTSLLPKHSFAKEHGLPVTSIH*FLGFST Trigger: AGTAGAAAAACCCAAGAACCAGTGGATGCTGGTTAC...GGGAAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAGGCAATAAAGAGGTCAGAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011298.14 |
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| CDS-3UTR GCA 90 bp | ACTATTCATTTTCAAAACACCATTTACTCCCTAAGGCTAGGCTCCCATCATCAACATCTTCGTTCCAGTTaGCCATCCGCACTCCAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: TIHFQNTIYSLRLGSHHQHLRSS*PSALQD Trigger: GTCCTGGAGTGCGGATGGGCAACTGGAACGAAGATG...TTGATGATGGGAGCCTAGCCTTAGGGAGTAAATGGTGTTTTGAAAATGAATAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS-3UTR GCA 90 bp | CTGACAAACTGCTTGGGGCACAGCCAAGAAAGACTGTTCATTTCTTTTAAGTGGCTAGGAAGTGTCTCATaGGCTCCTCCTCCAAATAGA | + |
|
Preference number: 4 (lower is better) Translates to: LTNCLGHSQERLFISFKWLGSVS*APPPNR Trigger: TCTATTTGGAGGAGGAGCGCATGAGACACTTCCTAG...CCACTTAAAAGAAATGAACAGTCTTTCTTGGCTGTGCCCCAAGCAGTTTGTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS-3UTR CCA 90 bp | CTGACAAACTGCTTGGGGCACAGCCAAGAAAGACTGTTCATTTCTTTTAAGTGGTTCATTTGCCCTCACTaGGAAGCCCTCATATTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: LTNCLGHSQERLFISFKWFICPH*EALIFQ Trigger: CTGGAATATGAGGGCTTCCCAGTGAGGGCAAATGAA...CCACTTAAAAGAAATGAACAGTCTTTCTTGGCTGTGCCCCAAGCAGTTTGTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
||
| 3UTR CAA 72 bp | CAGTGTCGAAACATCCGTAAACTTCTGACCTCTTTATaGCCTAAACACAGCTTTGCAAAGGAGCACGGGCTT | + |
|
Preference number: 4 (lower is better) Translates to: QCRNIRKLLTSL*PKHSFAKEHGL Trigger: AAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAGGCAATAAAGAGGTCAGAAGTTTACGGATGTTTCGACACTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
||
| CDS-3UTR CCA 90 bp | TTTCTACTTTGTGTGAGTCCAGATATGTGTGAGCTACAACCTCCATTTCCTTCCCGCTTTAACTTCATCTaGGCTCATACACAGGCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: FLLCVSPDMCELQPPFPSRFNFI*AHTQAQ Trigger: CTGAGCCTGTGTATGAGCCCAGATGAAGTTAAAGCG...GGAAGGAAATGGAGGTTGTAGCTCACACATATCTGGACTCACACAAAGTAGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
||
| 3UTR CAA 72 bp | TGTGTTCATGGAGTTCTGCACCTACTGACAAACTGCTaGGGGCACAGCCAAGAAAGACTGTTCATTTCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: CVHGVLHLLTNC*GHSQERLFISF Trigger: AAAAGAAATGAACAGTCTTTCTTGGCTGTGCCCCAAGCAGTTTGTCAGTAGGTGCAGAACTCCATGAACACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS-3UTR TCA 90 bp | ACTATTCATTTTCAAAACACCATTTACTCCCTAAGGCTAGGCTCCCATCATCAAAGCAGTTCAGATGGGTaGCCTCATCTGTCAGAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: TIHFQNTIYSLRLGSHHQSSSDG*PHLSES Trigger: TGACTCTGACAGATGAGGTCACCCATCTGAACTGCT...TTGATGATGGGAGCCTAGCCTTAGGGAGTAAATGGTGTTTTGAAAATGAATAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS-3UTR CCA 90 bp | ACTATTCATTTTCAAAACACCATTTACTCCCTAAGGCTAGGCTCCCATCATCAACGCTTTAACTTCATCTaGGCTCATACACAGGCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: TIHFQNTIYSLRLGSHHQRFNFI*AHTQAQ Trigger: CTGAGCCTGTGTATGAGCCCAGATGAAGTTAAAGCG...TTGATGATGGGAGCCTAGCCTTAGGGAGTAAATGGTGTTTTGAAAATGAATAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS-3UTR CCA 90 bp | ACTATTCATTTTCAAAACACCATTTACTCCCTAAGGCTAGGCTCCCATCATCAATTCATTTGCCCTCACTaGGAAGCCCTCATATTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: TIHFQNTIYSLRLGSHHQFICPH*EALIFQ Trigger: CTGGAATATGAGGGCTTCCCAGTGAGGGCAAATGAA...TTGATGATGGGAGCCTAGCCTTAGGGAGTAAATGGTGTTTTGAAAATGAATAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| 3UTR CAA 72 bp | TTCTTTTTCATTTGTAACAGTTTACCTATTGACCAATaGTCGGCTTCACGTGGGTATCCCCTTAGGACTAGG | + |
|
Preference number: 4 (lower is better) Translates to: FFFICNSLPIDQ*SASRGYPLRTR Trigger: CCTAGTCCTAAGGGGATACCCACGTGAAGCCGACAATTGGTCAATAGGTAAACTGTTACAAATGAAAAAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| CDS CCA 90 bp | AGGCGCAGCTGGGGATCGAGGAAGGCAGCCTGCCAGCAGTTCAGATaGGTGACCTCATCTGTCAGAGTCACCTCCTGTAGGCCGGACTTC | + |
|
Preference number: 5 (lower is better) Translates to: RRSWGSRKAACQQFR*VTSSVRVTSCRPDF Trigger: GAAGTCCGGCCTACAGGAGGTGACTCTGACAGATGAGGTCACCCATCTGAACTGCTGGCAGGCTGCCTTCCTCGATCCCCAGCTGCGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS CCA 90 bp | TTTTCATTTGCCCTCACTGGGAAGCCCTCATATTCCAGGCGCAGCTaGGGATCGAGGAAGGCAGCCTGCCAGCAGTTCAGATGGGTGACC | + |
|
Preference number: 5 (lower is better) Translates to: FSFALTGKPSYSRRS*GSRKAACQQFRWVT Trigger: GGTCACCCATCTGAACTGCTGGCAGGCTGCCTTCCTCGATCCCCAGCTGCGCCTGGAATATGAGGGCTTCCCAGTGAGGGCAAATGAAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS-3UTR CAA 90 bp | CTAAACACAGCTTTGCAAAGGAGCACGGGCTTCCCAGGTCCTGCCAAGCAAGGGGTTAGATACAGCATCTaGCCTTCCAGTCCTGCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: LNTALQRSTGFPGPAKQGVRYSI*PSSPAA Trigger: AGCAGCAGGACTGGAAGGCAAGATGCTGTATCTAAC...CCCTTGCTTGGCAGGACCTGGGAAGCCCGTGCTCCTTTGCAAAGCTGTGTTTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS-3UTR CAA 90 bp | CGTTACCAGGTGAGGCCATTAGCTCCTGCAGGATCTGACCTGATATTTCTGCCTGTTAGATACAGCATCTaGCCTTCCAGTCCTGCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: RYQVRPLAPAGSDLIFLPVRYSI*PSSPAA Trigger: AGCAGCAGGACTGGAAGGCAAGATGCTGTATCTAAC...AGGCAGAAATATCAGGTCAGATCCTGCAGGAGCTAATGGCCTCACCTGGTAACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| CDS GCA 90 bp | TGCACAGCACTCACACCACAGGGTATCTCTAAGTCATCACTAAGCTaGGCTTTAACTTCATCTGGGCTCATACACAGGCTCAGGTCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: CTALTPQGISKSSLS*ALTSSGLIHRLRSP Trigger: AGGAGACCTGAGCCTGTGTATGAGCCCAGATGAAGTTAAAGCGCAGCTTAGTGATGACTTAGAGATACCCTGTGGTGTGAGTGCTGTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 ENSMUST00000149671.2 |
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| CDS-3UTR CAA 90 bp | ATGCCCTCCCAAATCCACTCACAGCAGGTTTTACATATGTTTATGTGTCAGGCATCTCCTCTCATAAACTaGCCAGCTTCCTCCCCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: MPSQIHSQQVLHMFMCQASPLIN*PASSPR Trigger: CCTGGGGGAGGAAGCTGGCAAGTTTATGAGAGGAGA...TGCCTGACACATAAACATATGTAAAACCTGCTGTGAGTGGATTTGGGAGGGCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119134.8 |
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| CDS-3UTR CAA 90 bp | ACAAACTGCTTGGGGCACAGCCAAGAAAGACTGTTCATTTCTTTTAAGTGGAAGTCTCCTCTCATAAACTaGCCAGCTTCCTCCCCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: TNCLGHSQERLFISFKWKSPLIN*PASSPR Trigger: CCTGGGGGAGGAAGCTGGCAAGTTTATGAGAGGAGA...CTTCCACTTAAAAGAAATGAACAGTCTTTCTTGGCTGTGCCCCAAGCAGTTTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS-3UTR CAA 90 bp | ACAAACTGCTTGGGGCACAGCCAAGAAAGACTGTTCATTTCTTTTAAGTGGAAGGGGTCCTGTGGTCACTaGTTAGATACAGCATCTTGC | + |
|
Preference number: 5 (lower is better) Translates to: TNCLGHSQERLFISFKWKGSCGH*LDTASC Trigger: GCAAGATGCTGTATCTAACAAGTGACCACAGGACCC...CTTCCACTTAAAAGAAATGAACAGTCTTTCTTGGCTGTGCCCCAAGCAGTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS-3UTR CAA 90 bp | ACAAACTGCTTGGGGCACAGCCAAGAAAGACTGTTCATTTCTTTTAAGTGGAAGTTGGGTTTTTCTACTTaGTGTGAGTCCAGATATGTG | + |
|
Preference number: 5 (lower is better) Translates to: TNCLGHSQERLFISFKWKLGFST*CESRYV Trigger: CACATATCTGGACTCACACAAAGTAGAAAAACCCAA...CTTCCACTTAAAAGAAATGAACAGTCTTTCTTGGCTGTGCCCCAAGCAGTTTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000011298.14 |
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| CDS GCA 72 bp | TGCGCTCCTCCTCCAAATAGACATCTTCGTTCCAGTTaGCCATCCGCACTCCAGGACCATACACGTTCTGCG | + |
|
Preference number: 6 (lower is better) Translates to: CAPPPNRHLRSS*PSALQDHTRSA Trigger: CGCAGAACGTGTATGGTCCTGGAGTGCGGATGGGCAACTGGAACGAAGATGTCTATTTGGAGGAGGAGCGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 |
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| CDS GCA 72 bp | ATGGTGAAGGTGTTCCTGCCCATCGGGGCGATGGTCTaGACAGCACTCACACCACAGGGTATCTCTAAGTCA | + |
|
Preference number: 6 (lower is better) Translates to: MVKVFLPIGAMV*TALTPQGISKS Trigger: TGACTTAGAGATACCCTGTGGTGTGAGTGCTGTGCAGACCATCGCCCCGATGGGCAGGAACACCTTCACCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 ENSMUST00000149671.2 |
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| CDS CAA 72 bp | TATCCCCAGGCAGAAGTTCTGCCCATAGACAACCACTaGGCCCATTTCGCAGCTGTTTGCGCCGTCACTCAA | + |
|
Preference number: 6 (lower is better) Translates to: YPQAEVLPIDNH*AHFAAVCAVTQ Trigger: TTGAGTGACGGCGCAAACAGCTGCGAAATGGGCCAAGTGGTTGTCTATGGGCAGAACTTCTGCCTGGGGATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 ENSMUST00000149671.2 |
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| CDS CAA 90 bp | TCCTGCTGCTATCCCCAGGCAGAAGTTCTGCCCATAGACAACCACTaGGCCCATTTCGCAGCTGTTTGCGCCGTCACTCAAAATGGTGAA | + |
|
Preference number: 6 (lower is better) Translates to: SCCYPQAEVLPIDNH*AHFAAVCAVTQNGE Trigger: TTCACCATTTTGAGTGACGGCGCAAACAGCTGCGAAATGGGCCAAGTGGTTGTCTATGGGCAGAACTTCTGCCTGGGGATAGCAGCAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 ENSMUST00000149671.2 |
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| CDS CAA 90 bp | GTAGGCCGGACTTCAGAGAAGACTTCAAAAGGGTCCTGTGGTCACTaGTTAGATACAGCATCTTGCCTTCCAGTCCTGCTGCTATCCCCA | + |
|
Preference number: 6 (lower is better) Translates to: VGRTSEKTSKGSCGH*LDTASCLPVLLLSP Trigger: TGGGGATAGCAGCAGGACTGGAAGGCAAGATGCTGTATCTAACAAGTGACCACAGGACCCTTTTGAAGTCTTCTCTGAAGTCCGGCCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 ENSMUST00000149671.2 |
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| CDS GCA 72 bp | AAAGGGTCCTGTGGTCACTTGTTAGATACAGCATCTTaGCTTCCAGTCCTGCTGCTATCCCCAGGCAGAAGT | + |
|
Preference number: 6 (lower is better) Translates to: KGSCGHLLDTAS*LPVLLLSPGRS Trigger: ACTTCTGCCTGGGGATAGCAGCAGGACTGGAAGGCAAGATGCTGTATCTAACAAGTGACCACAGGACCCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 ENSMUST00000149671.2 |
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| CDS CAA 72 bp | AAAAGGGTCCTGTGGTCACTTGTTAGATACAGCATCTaGCCTTCCAGTCCTGCTGCTATCCCCAGGCAGAAG | + |
|
Preference number: 6 (lower is better) Translates to: KRVLWSLVRYSI*PSSPAAIPRQK Trigger: CTTCTGCCTGGGGATAGCAGCAGGACTGGAAGGCAAGATGCTGTATCTAACAAGTGACCACAGGACCCTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 ENSMUST00000149671.2 |
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| CDS GCA 72 bp | CTCACACCACAGGGTATCTCTAAGTCATCACTAAGCTaGGCTTTAACTTCATCTGGGCTCATACACAGGCTC | + |
|
Preference number: 6 (lower is better) Translates to: LTPQGISKSSLS*ALTSSGLIHRL Trigger: GAGCCTGTGTATGAGCCCAGATGAAGTTAAAGCGCAGCTTAGTGATGACTTAGAGATACCCTGTGGTGTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 ENSMUST00000149671.2 |
||
| CDS CCA 72 bp | AGGCCGGACTTCAGAGAAGACTTCAAAAGGGTCCTGTaGTCACTTGTTAGATACAGCATCTTGCCTTCCAGT | + |
|
Preference number: 6 (lower is better) Translates to: RPDFREDFKRVL*SLVRYSILPSS Trigger: ACTGGAAGGCAAGATGCTGTATCTAACAAGTGACCACAGGACCCTTTTGAAGTCTTCTCTGAAGTCCGGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 ENSMUST00000149671.2 |
||
| CDS TCA 72 bp | CAGCTTCCTCCCCCAGGACTTGGTCAGGATTCACAATaGTCACTTTATCGCCATAGTGGACATATCCATCTT | + |
|
Preference number: 6 (lower is better) Translates to: QLPPPGLGQDSQ*SLYRHSGHIHL Trigger: AAGATGGATATGTCCACTATGGCGATAAAGTGATCATTGTGAATCCTGACCAAGTCCTGGGGGAGGAAGCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 ENSMUST00000149671.2 |
||
| CDS CAA 72 bp | TCCTCTCATAAACTTGCCAGCTTCCTCCCCCAGGACTaGGTCAGGATTCACAATGATCACTTTATCGCCATA | + |
|
Preference number: 6 (lower is better) Translates to: SSHKLASFLPQD*VRIHNDHFIAI Trigger: TATGGCGATAAAGTGATCATTGTGAATCCTGACCAAGTCCTGGGGGAGGAAGCTGGCAAGTTTATGAGAGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 ENSMUST00000149671.2 |
||
| CDS CAA 72 bp | ACTTCAGAGAAGACTTCAAAAGGGTCCTGTGGTCACTaGTTAGATACAGCATCTTGCCTTCCAGTCCTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: TSEKTSKGSCGH*LDTASCLPVLL Trigger: CAGCAGGACTGGAAGGCAAGATGCTGTATCTAACAAGTGACCACAGGACCCTTTTGAAGTCTTCTCTGAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000011298.14 ENSMUST00000119134.8 ENSMUST00000149671.2 |
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