Pregenerated sensors for CES1C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057400Ensembl transcript IDs: ENSMUST00000034189.17, ENSMUST00000211843.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | CTATTGTGCAGTTTCCTCTGTAAGATCCATCTTTGGTaGATAGTCATCCTTTGTGGAATAGCTCCATTTTCG | + |
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Preference number: 3 (lower is better) Translates to: LLCSFLCKIHLW*IVILCGIAPFS Trigger: CGAAAATGGAGCTATTCCACAAAGGATGACTATTCACCAAAGATGGATCTTACAGAGGAAACTGCACAATAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR TCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGTTCTGGCGCAAGCACTaGACCATGGCAGCTGATGAG | + |
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Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEFWRKH*TMAADE Trigger: CTCATCAGCTGCCATGGTTCAGTGCTTGCGCCAGAA...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR TCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGTCATATTCTGGCCAGTaGGGCAGCCCCTCCCCATTA | + |
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Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAESYSGQ*GSPSPL Trigger: TAATGGGGAGGGGCTGCCTCACTGGCCAGAATATGA...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR CCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGCTGCTCATCATATTCTaGCCAGTGAGGCAGCCCCTC | + |
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Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAELLIIF*PVRQPL Trigger: GAGGGGCTGCCTCACTGGCCAGAATATGATGAGCAG...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR GCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGACTTCCCCAGGACTTTaGCTTGTGTGGTGTCCACCA | + |
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Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAETSPGL*LVWCPP Trigger: TGGTGGACACCACACAAGGCAAAGTCCTGGGGAAGT...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR CCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGAGTCTCTGGGCTTGCTaGGTAGTGGCTCCAATCTGT | + |
|
Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAESLWAC*VVAPIC Trigger: ACAGATTGGAGCCACTACCCAGCAAGCCCAGAGACT...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR CCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGTCTGCTTTCAGTCTCTaGGCTTGCTGGGTAGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAESAFSL*ACWVVA Trigger: AGCCACTACCCAGCAAGCCCAGAGACTGAAAGCAGA...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR CCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGAGGGTCTGTCTCAGGTaGATTCTTAGCCAGGAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAERVCLR*ILSQEL Trigger: GAGCTCCTGGCTAAGAATCCACCTGAGACAGACCCT...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR TCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGATACCCAGGCGGTATTaGATGGTTACTACCACCACG | + |
|
Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEIPRRY*MVTTTT Trigger: CGTGGTGGTAGTAACCATTCAATACCGCCTGGGTAT...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR TCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGAAGATTTCATCGCCATaGTCACCCTCAACCGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEKISSP*SPSTVW Trigger: CCAGACGGTTGAGGGTGATCATGGCGATGAAATCTT...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR CCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGATGACTCTCCAAAGATaGTCACGGAATCCGGGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEMTLQR*SRNPGS Trigger: GGAACCCGGATTCCGTGACCATCTTTGGAGAGTCAT...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR TCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGCAAACTCTTGCTTGTTaGAGCCCACTATGTAGGGGA | + |
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Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEQTLAC*SPLCRG Trigger: TCCCCTACATAGTGGGCTTCAACAAGCAAGAGTTTG...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR CCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGTTTGCAATGTTATCTTaGACCCAGCGTAGTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEFAMLS*TQRSAA Trigger: GGCTGCACTACGCTGGGTCCAAGATAACATTGCAAA...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR TCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGAGTCTTCCGAAATCTTaGGAGGCAGGATCTCCTTTT | + |
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Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAESLPKS*EAGSPF Trigger: AAAAGGAGATCCTGCCTCTCAAGATTTCGGAAGACT...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR GCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGTCACAGGCAATTGGCTaGTTTTTGTCAAATCGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAESQAIG*FLSNRQ Trigger: CTGCCGATTTGACAAAAAGCAGCCAATTGCCTGTGA...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR GCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGACCCCTCTTAAGTACTaGTCAATGACTGCTGGAATC | + |
|
Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAETPLKY*SMTAGI Trigger: GATTCCAGCAGTCATTGAGCAGTACTTAAGAGGGGT...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR GCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGTGTAGATACCCTTCCTaGTCATCATATTCTGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAECRYPS*SSYSGQ Trigger: CTGGCCAGAATATGATGAGCAGGAAGGGTATCTACA...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR TCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGCAAATCCTTCTAAGCTaGTATACTTCCCCAGGACTT | + |
|
Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEQILLS*YTSPGL Trigger: AAGTCCTGGGGAAGTATATCAGCTTAGAAGGATTTG...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR TCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGCCACGTTTGTATTTATaGCCACACCACTCTCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEPRLYL*PHHSQK Trigger: TTTCTGAGAGTGGTGTGGTCATAAATACAAACGTGG...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR CCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGACCATCACAGGCAATTaGCTGCTTTTTGTCAAATCG | + |
|
Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAETITGN*LLFVKS Trigger: CGATTTGACAAAAAGCAGCCAATTGCCTGTGATGGT...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR CCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGATGTTAAGTTCAGAGTaGAACCTCCTCAAGAGAAGA | + |
|
Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEMLSSE*NLLKRR Trigger: TCTTCTCTTGAGGAGGTTCCACTCTGAACTTAACAT...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR TCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGTTAAGTACTGCTCAATaGCTGCTGGAATCATACTTT | + |
|
Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAELSTAQ*LLESYF Trigger: AAAGTATGATTCCAGCAGTCATTGAGCAGTACTTAA...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR CCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGGAGGTGTCATTACACTaGGAAAGAGTAGCTATTATT | + |
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Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEEVSLH*ERVAII Trigger: AATAATAGCTACTCTTTCCCAGTGTAATGACACCTC...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR GCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGTCAGGGAGTAGATTTTaGAACATCATTGGAATTATC | + |
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Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAESGSRF*NIIGII Trigger: GATAATTCCAATGATGTTGCAAAATCTACTCCCTGA...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR GCA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGTTTCCTCATTCATTTTaGCTTCAGGGAGTAGATTTT | + |
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Preference number: 4 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEFPHSF*LQGVDF Trigger: AAAATCTACTCCCTGAAGGCAAAATGAATGAGGAAA...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR CAA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGCTGTGGAAGAGGTCCTaGCCCAGAGGAGATAAGACA | + |
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Preference number: 5 (lower is better) Translates to: HPLWNSSIFAPLVLRLAELWKRS*PRGDKT Trigger: TGTCTTATCTCCTCTGGGCAAGGACCTCTTCCACAG...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR CAA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGGTGAGTGTCCCAGAATaGGGCAAACAGCAAGAGAAG | + |
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Preference number: 5 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEVSVPE*GKQQEK Trigger: CTTCTCTTGCTGTTTGCCCAATTCTGGGACACTCAC...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR CAA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGTATCTGAGAGTATCTTaGCCCAACCTGCATCTTGGG | + |
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Preference number: 5 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEYLRVS*PNLHLG Trigger: CCCAAGATGCAGGTTGGGCAAAGATACTCTCAGATA...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR CAA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGCAGTCTTCCGAAATCTaGAGAGGCAGGATCTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEQSSEI*RGRISF Trigger: AAAGGAGATCCTGCCTCTCAAGATTTCGGAAGACTG...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR CAA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGGTGGACAGGGAGATATaGTACTGTACCAGTTTCCCT | + |
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Preference number: 5 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEVDREI*YCTSFP Trigger: AGGGAAACTGGTACAGTACAATATCTCCCTGTCCAC...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR CAA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGATAAGCTCACTCTTTTaGGCAGGGTCATCTACCCCT | + |
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Preference number: 5 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEISSLF*AGSSTP Trigger: AGGGGTAGATGACCCTGCCAAAAAGAGTGAGCTTAT...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS CCA 90 bp | GGATCTCTTCTGGTGCCTTTGGCAGCACCACTCCGTCAATCATGGTaGACAGGGAGATATTGTACTGTACCAGTTTCCCTGAAATCTCCA | + |
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Preference number: 5 (lower is better) Translates to: GSLLVPLAAPLRQSW*TGRYCTVPVSLKSP Trigger: TGGAGATTTCAGGGAAACTGGTACAGTACAATATCTCCCTGTCCACCATGATTGACGGAGTGGTGCTGCCAAAGGCACCAGAAGAGATCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS CCA 90 bp | CCAGGATCTCTTCTGGTGCCTTTGGCAGCACCACTCCGTCAATCATaGTGGACAGGGAGATATTGTACTGTACCAGTTTCCCTGAAATCT | + |
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Preference number: 5 (lower is better) Translates to: PGSLLVPLAAPLRQS*WTGRYCTVPVSLKS Trigger: AGATTTCAGGGAAACTGGTACAGTACAATATCTCCCTGTCCACCATGATTGACGGAGTGGTGCTGCCAAAGGCACCAGAAGAGATCCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS-3UTR CAA 90 bp | CATCCTTTGTGGAATAGCTCCATTTTCGCTCCGCTGGTCCTGAGACTGGCAGAGGTTTCCTCATTCATTTaGCCTTCAGGGAGTAGATTT | + |
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Preference number: 5 (lower is better) Translates to: HPLWNSSIFAPLVLRLAEVSSFI*PSGSRF Trigger: AAATCTACTCCCTGAAGGCAAAATGAATGAGGAAAC...CTCTGCCAGTCTCAGGACCAGCGGAGCGAAAATGGAGCTATTCCACAAAGGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS CCA 72 bp | CTGGTGCCTTTGGCAGCACCACTCCGTCAATCATGGTaGACAGGGAGATATTGTACTGTACCAGTTTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: LVPLAAPLRQSW*TGRYCTVPVSL Trigger: CAGGGAAACTGGTACAGTACAATATCTCCCTGTCCACCATGATTGACGGAGTGGTGCTGCCAAAGGCACCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034189.17 ENSMUST00000211843.2 |
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| CDS TCA 72 bp | AGTGGAGCCCCGAATACAAAGAAGATTTCATCGCCATaGTCACCCTCAACCGTCTGGGGTCTCTTGTCAGAC | + |
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Preference number: 6 (lower is better) Translates to: SGAPNTKKISSP*SPSTVWGLLSD Trigger: GTCTGACAAGAGACCCCAGACGGTTGAGGGTGATCATGGCGATGAAATCTTCTTTGTATTCGGGGCTCCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS CAA 90 bp | GCCTTTGGCAGCACCACTCCGTCAATCATGGTGGACAGGGAGATATaGTACTGTACCAGTTTCCCTGAAATCTCCAAGAGCTCACTCTCT | + |
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Preference number: 6 (lower is better) Translates to: AFGSTTPSIMVDREI*YCTSFPEISKSSLS Trigger: AGAGAGTGAGCTCTTGGAGATTTCAGGGAAACTGGTACAGTACAATATCTCCCTGTCCACCATGATTGACGGAGTGGTGCTGCCAAAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034189.17 ENSMUST00000211843.2 |
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| CDS TCA 72 bp | GAGAGGCAGGATCTCCTTTTCGGTGCTGAACATATCTaGGAGTATCTTTGCCCAACCTGCATCTTGGGAGCA | + |
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Preference number: 6 (lower is better) Translates to: ERQDLLFGAEHI*EYLCPTCILGA Trigger: TGCTCCCAAGATGCAGGTTGGGCAAAGATACTCTCAGATATGTTCAGCACCGAAAAGGAGATCCTGCCTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS CAA 72 bp | AGCACCACTCCGTCAATCATGGTGGACAGGGAGATATaGTACTGTACCAGTTTCCCTGAAATCTCCAAGAGC | + |
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Preference number: 6 (lower is better) Translates to: STTPSIMVDREI*YCTSFPEISKS Trigger: GCTCTTGGAGATTTCAGGGAAACTGGTACAGTACAATATCTCCCTGTCCACCATGATTGACGGAGTGGTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034189.17 ENSMUST00000211843.2 |
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| CDS CAA 90 bp | GTCCACCTCCATGGATCCACACCATCACAGGCAATTGGCTGCTTTTaGTCAAATCGGCAGGACTGTAAATATTCAGGTAGAGACAGTCTT | + |
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Preference number: 6 (lower is better) Translates to: VHLHGSTPSQAIGCF*SNRQDCKYSGRDSL Trigger: AAGACTGTCTCTACCTGAATATTTACAGTCCTGCCGATTTGACAAAAAGCAGCCAATTGCCTGTGATGGTGTGGATCCATGGAGGTGGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS GCA 72 bp | CACCTCCATGGATCCACACCATCACAGGCAATTGGCTaGTTTTTGTCAAATCGGCAGGACTGTAAATATTCA | + |
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Preference number: 6 (lower is better) Translates to: HLHGSTPSQAIG*FLSNRQDCKYS Trigger: TGAATATTTACAGTCCTGCCGATTTGACAAAAAGCAGCCAATTGCCTGTGATGGTGTGGATCCATGGAGGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS CCA 72 bp | GCTGGAATCATACTTTCAGAGATGTTAAGTTCAGAGTaGAACCTCCTCAAGAGAAGACTGGCCGTTTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: AGIILSEMLSSE*NLLKRRLAVSS Trigger: TGAGGAAACGGCCAGTCTTCTCTTGAGGAGGTTCCACTCTGAACTTAACATCTCTGAAAGTATGATTCCAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS CAA 90 bp | GAGTGGAACCTCCTCAAGAGAAGACTGGCCGTTTCCTCATTCATTTaGCCTTCAGGGAGTAGATTTTGCAACATCATTGGAATTATCCAG | + |
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Preference number: 6 (lower is better) Translates to: EWNLLKRRLAVSSFI*PSGSRFCNIIGIIQ Trigger: CTGGATAATTCCAATGATGTTGCAAAATCTACTCCCTGAAGGCAAAATGAATGAGGAAACGGCCAGTCTTCTCTTGAGGAGGTTCCACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS CAA 72 bp | CTCCTCAAGAGAAGACTGGCCGTTTCCTCATTCATTTaGCCTTCAGGGAGTAGATTTTGCAACATCATTGGA | + |
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Preference number: 6 (lower is better) Translates to: LLKRRLAVSSFI*PSGSRFCNIIG Trigger: TCCAATGATGTTGCAAAATCTACTCCCTGAAGGCAAAATGAATGAGGAAACGGCCAGTCTTCTCTTGAGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034189.17 |
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| CDS CAA 90 bp | TGGGAAAGAGTAGCTATTATTTCATTCACAGCCTGTATATTCTTCTaGCCCACGTTTGTATTTATGACCACACCACTCTCAGAAATGGCT | + |
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Preference number: 6 (lower is better) Translates to: WERVAIISFTACIFF*PTFVFMTTPLSEMA Trigger: AGCCATTTCTGAGAGTGGTGTGGTCATAAATACAAACGTGGGCAAGAAGAATATACAGGCTGTGAATGAAATAATAGCTACTCTTTCCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034189.17 ENSMUST00000211843.2 |
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| CDS CAA 72 bp | GTAGCTATTATTTCATTCACAGCCTGTATATTCTTCTaGCCCACGTTTGTATTTATGACCACACCACTCTCA | + |
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Preference number: 6 (lower is better) Translates to: VAIISFTACIFF*PTFVFMTTPLS Trigger: TGAGAGTGGTGTGGTCATAAATACAAACGTGGGCAAGAAGAATATACAGGCTGTGAATGAAATAATAGCTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034189.17 ENSMUST00000211843.2 |
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