RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CEP89 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023072

Ensembl transcript IDs: ENSMUST00000079414.12, ENSMUST00000141704.8, ENSMUST00000150421.2, ENSMUST00000206230.2, ENSMUST00000206854.2

Found 307 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTCTCCCTGAGAGGAGCGTCTCAAGCAAGTGTCCGGAGGAGCTGTaGCGTGCTGTGTGCTTCTTCTCTCCAGGGTGGCCTGGAGAAGGC +
Preference number: 1 (lower is better)
Translates to: GLPERSVSSKCPEEL*RAVCFFSPGWPGEG
Trigger: GCCTTCTCCAGGCCACCCTGGAGAGAAGAAGCACACAGCACGTCACAGCTCCTCCGGACACTTGCTTGAGACGCTCCTCTCAGGGAGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR GCA 90 bp CTGCTGTTCCTTCAGGCGGTGATGGATATCCCCCAGCTTCAGTGCTaGCTGCTTCTTGTACCCCTTTACCCTCTCCTCCAGCTTGCCCAG +
Preference number: 1 (lower is better)
Translates to: LLFLQAVMDIPQLQC*LLLVPLYPLLQLAQ
Trigger: CTGGGCAAGCTGGAGGAGAGGGTAAAGGGGTACAAGAAGCAGGCAGCACTGAAGCTGGGGGATATCCATCACCGCCTGAAGGAACAGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR GCA 90 bp GCGATCTTGCTATCCAGCTGTGCCTTGAGCTCTGTGCATTTGGCCTaGAAGCTCTCCAGCTGCTCCGTGCTTTCCACGAGCTGCTTTTCC +
Preference number: 1 (lower is better)
Translates to: AILLSSCALSSVHLA*KLSSCSVLSTSCFS
Trigger: GGAAAAGCAGCTCGTGGAAAGCACGGAGCAGCTGGAGAGCTTGCAGGCCAAATGCACAGAGCTCAAGGCACAGCTGGATAGCAAGATCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
3UTR TCA 90 bp TTTTCCTGCAGCATCCGATGTAGGTGCTTCACCTCCTTCTGGTACTaGGCTGCTTTGCCGGCAAAGTCCTCCTGCTGTTCCTTCAGGCGG +
Preference number: 1 (lower is better)
Translates to: FSCSIRCRCFTSFWY*AALPAKSSCCSFRR
Trigger: CCGCCTGAAGGAACAGCAGGAGGACTTTGCCGGCAAAGCAGCTCAGTACCAGAAGGAGGTGAAGCACCTACATCGGATGCTGCAGGAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR GCA 90 bp CATCTCTGCCATCTCCCACATCCTTCCAGGTGGACTCTGACTCCCTaGAGCTGGTTGACACCTGTGTTTCAGCATCTTCATCCTCCCCGT +
Preference number: 1 (lower is better)
Translates to: HLCHLPHPSRWTLTP*SWLTPVFQHLHPPR
Trigger: ACGGGGAGGATGAAGATGCTGAAACACAGGTGTCAACCAGCTGCAGGGAGTCAGAGTCCACCTGGAAGGATGTGGGAGATGGCAGAGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
3UTR CCA 90 bp TCTCCAGGGTGGCCTGGAGAAGGCTCCGCATCCTCCTGTTCTCCTTaGCAGTGGACTCCAGGACCATTTCAAGCTCACCTTCCATATTTC +
Preference number: 1 (lower is better)
Translates to: SPGWPGEGSASSCSP*QWTPGPFQAHLPYF
Trigger: GAAATATGGAAGGTGAGCTTGAAATGGTCCTGGAGTCCACTGCCAAGGAGAACAGGAGGATGCGGAGCCTTCTCCAGGCCACCCTGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR CCA 90 bp TGCCATCTCCCACATCCTTCCAGGTGGACTCTGACTCCCTGCAGCTaGTTGACACCTGTGTTTCAGCATCTTCATCCTCCCCGTAGCCTA +
Preference number: 1 (lower is better)
Translates to: CHLPHPSRWTLTPCS*LTPVFQHLHPPRSL
Trigger: TAGGCTACGGGGAGGATGAAGATGCTGAAACACAGGTGTCAACCAGCTGCAGGGAGTCAGAGTCCACCTGGAAGGATGTGGGAGATGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
3UTR GCA 90 bp GCATCCGATGTAGGTGCTTCACCTCCTTCTGGTACTGAGCTGCTTTaGCGGCAAAGTCCTCCTGCTGTTCCTTCAGGCGGTGATGGATAT +
Preference number: 1 (lower is better)
Translates to: ASDVGASPPSGTELL*RQSPPAVPSGGDGY
Trigger: ATATCCATCACCGCCTGAAGGAACAGCAGGAGGACTTTGCCGGCAAAGCAGCTCAGTACCAGAAGGAGGTGAAGCACCTACATCGGATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR CCA 90 bp GGGTGGCCTGGAGAAGGCTCCGCATCCTCCTGTTCTCCTTGGCAGTaGACTCCAGGACCATTTCAAGCTCACCTTCCATATTTCTTTTCT +
Preference number: 1 (lower is better)
Translates to: GWPGEGSASSCSPWQ*TPGPFQAHLPYFFS
Trigger: AGAAAAGAAATATGGAAGGTGAGCTTGAAATGGTCCTGGAGTCCACTGCCAAGGAGAACAGGAGGATGCGGAGCCTTCTCCAGGCCACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR TCA 90 bp TCTCCTCCAGCTTGCCCAGGCGAATGTTGCCTTTCAGGATTTTGTTaGGGACCCCATGCTTCTCGCTCTCTAAACACTGAGCCTGGAAGT +
Preference number: 1 (lower is better)
Translates to: SPPACPGECCLSGFC*GPHASRSLNTEPGS
Trigger: ACTTCCAGGCTCAGTGTTTAGAGAGCGAGAAGCATGGGGTCCTCAACAAAATCCTGAAAGGCAACATTCGCCTGGGCAAGCTGGAGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR CCA 90 bp CCAGTCTGGTTGAGGAGCATCATCCTTTCTCACCAGCTTTTGGGATaGCAGTACCTGGTCCCTGTGAGGCACAGTGTATGTAGCATCTCT +
Preference number: 1 (lower is better)
Translates to: PVWLRSIILSHQLLG*QYLVPVRHSVCSIS
Trigger: AGAGATGCTACATACACTGTGCCTCACAGGGACCAGGTACTGCCATCCCAAAAGCTGGTGAGAAAGGATGATGCTCCTCAACCAGACTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
3UTR-3UTR CCA 90 bp CATCTCTGCCATCTCCCACATCCTTCCAGGTGGACTCTGACTCCCTGCAGCTGGGATCTCTGGCGAGGCTaGGGAATGGCAACTGTCTGC +
Preference number: 2 (lower is better)
Translates to: HLCHLPHPSRWTLTPCSWDLWRG*GMATVC
Trigger: GCAGACAGTTGCCATTCCCCAGCCTCGCCAGAGATC...CCAGCTGCAGGGAGTCAGAGTCCACCTGGAAGGATGTGGGAGATGGCAGAGATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
3UTR CAA 90 bp TCCACTGCGATCTTGCTATCCAGCTGTGCCTTGAGCTCTGTGCATTaGGCCTGCAAGCTCTCCAGCTGCTCCGTGCTTTCCACGAGCTGC +
Preference number: 2 (lower is better)
Translates to: STAILLSSCALSSVH*ACKLSSCSVLSTSC
Trigger: GCAGCTCGTGGAAAGCACGGAGCAGCTGGAGAGCTTGCAGGCCAAATGCACAGAGCTCAAGGCACAGCTGGATAGCAAGATCGCAGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
3UTR-3UTR GCA 90 bp GCTTCTTCTCTCCAGGGTGGCCTGGAGAAGGCTCCGCATCCTCCTGTTCTCCTTCCCCAGCTTCAGTGCTaGCTGCTTCTTGTACCCCTT +
Preference number: 2 (lower is better)
Translates to: ASSLQGGLEKAPHPPVLLPQLQC*LLLVPL
Trigger: AAGGGGTACAAGAAGCAGGCAGCACTGAAGCTGGGG...AAGGAGAACAGGAGGATGCGGAGCCTTCTCCAGGCCACCCTGGAGAGAAGAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR-3UTR CCA 90 bp ACGTGCTGTGTGCTTCTTCTCTCCAGGGTGGCCTGGAGAAGGCTCCGCATCCTCCTCACTGTCAGAGCTTaGGGGAATCTACCAGACCTT +
Preference number: 2 (lower is better)
Translates to: TCCVLLLSRVAWRRLRILLTVRA*GNLPDL
Trigger: AAGGTCTGGTAGATTCCCCCAAGCTCTGACAGTGAG...GAGGATGCGGAGCCTTCTCCAGGCCACCCTGGAGAGAAGAAGCACACAGCACGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR-3UTR CCA 90 bp TTTGCCGGCAAAGTCCTCCTGCTGTTCCTTCAGGCGGTGATGGATATCCCCCAGTGGAAGTCCGCCCCTTaGAGGCAACTCACTGTCAGA +
Preference number: 2 (lower is better)
Translates to: FAGKVLLLFLQAVMDIPQWKSAP*RQLTVR
Trigger: TCTGACAGTGAGTTGCCTCCAAGGGGCGGACTTCCA...CTGGGGGATATCCATCACCGCCTGAAGGAACAGCAGGAGGACTTTGCCGGCAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR CAA 90 bp CTCTCCAGGGTGGCCTGGAGAAGGCTCCGCATCCTCCTGTTCTCCTaGGCAGTGGACTCCAGGACCATTTCAAGCTCACCTTCCATATTT +
Preference number: 2 (lower is better)
Translates to: LSRVAWRRLRILLFS*AVDSRTISSSPSIF
Trigger: AAATATGGAAGGTGAGCTTGAAATGGTCCTGGAGTCCACTGCCAAGGAGAACAGGAGGATGCGGAGCCTTCTCCAGGCCACCCTGGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR-3UTR GCA 90 bp GGAGCTGTGACGTGCTGTGTGCTTCTTCTCTCCAGGGTGGCCTGGAGAAGGCTCTCCATATTTCTTTTCTaGTGCAGCGCCTCATCCAGG +
Preference number: 2 (lower is better)
Translates to: GAVTCCVLLLSRVAWRRLSIFLF*CSASSR
Trigger: CCTGGATGAGGCGCTGCAGCAGAAAAGAAATATGGA...GAGCCTTCTCCAGGCCACCCTGGAGAGAAGAAGCACACAGCACGTCACAGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR CAA 90 bp CATCTCCCACATCCTTCCAGGTGGACTCTGACTCCCTGCAGCTGGTaGACACCTGTGTTTCAGCATCTTCATCCTCCCCGTAGCCTAACA +
Preference number: 2 (lower is better)
Translates to: HLPHPSRWTLTPCSW*TPVFQHLHPPRSLT
Trigger: TGTTAGGCTACGGGGAGGATGAAGATGCTGAAACACAGGTGTCAACCAGCTGCAGGGAGTCAGAGTCCACCTGGAAGGATGTGGGAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
3UTR-3UTR GCA 90 bp GCCTCATCCAGGACCTCCTGCTTTTCCTGCAGCATCCGATGTAGGTGCTTCACCAGCTTCAGTGCTGCCTaGTTCTTGTACCCCTTTACC +
Preference number: 2 (lower is better)
Translates to: ASSRTSCFSCSIRCRCFTSFSAA*FLYPFT
Trigger: GGTAAAGGGGTACAAGAAGCAGGCAGCACTGAAGCT...GGTGAAGCACCTACATCGGATGCTGCAGGAAAAGCAGGAGGTCCTGGATGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR-3UTR CCA 90 bp GCCAGTCTGGTTGAGGAGCATCATCCTTTCTCACCAGCTTTTGGGATGGCAGTACCACATCCTTCCAGGTaGACTCTGACTCCCTGCAGC +
Preference number: 2 (lower is better)
Translates to: ASLVEEHHPFSPAFGMAVPHPSR*TLTPCS
Trigger: GCTGCAGGGAGTCAGAGTCCACCTGGAAGGATGTGG...TACTGCCATCCCAAAAGCTGGTGAGAAAGGATGATGCTCCTCAACCAGACTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
3UTR-3UTR GCA 90 bp AAAGCCAGTCTGGTTGAGGAGCATCATCCTTTCTCACCAGCTTTTGGGATGGCATCATTCTGCCAGCTTTaGCGCAGCCTCAGCTCGGAA +
Preference number: 2 (lower is better)
Translates to: KASLVEEHHPFSPAFGMASFCQL*RSLSSE
Trigger: TTCCGAGCTGAGGCTGCGGCAAAGCTGGCAGAATGA...TGCCATCCCAAAAGCTGGTGAGAAAGGATGATGCTCCTCAACCAGACTGGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
3UTR-3UTR TCA 90 bp TTGACAATTGATGTATGGACGTCCACTGCGATCTTGCTATCCAGCTGTGCCTTGTGCTTTTCCTGGCCCTaGGTCTTTGCTTCCAGGAGC +
Preference number: 2 (lower is better)
Translates to: LTIDVWTSTAILLSSCALCFSWP*VFASRS
Trigger: GCTCCTGGAAGCAAAGACTCAGGGCCAGGAAAAGCA...CAAGGCACAGCTGGATAGCAAGATCGCAGTGGACGTCCATACATCAATTGTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
3UTR-3UTR GCA 90 bp TCATTGACAATTGATGTATGGACGTCCACTGCGATCTTGCTATCCAGCTGTGCCCTGGCCCTGAGTCTTTaGTTCCAGGAGCACAAGTTG +
Preference number: 2 (lower is better)
Translates to: SLTIDVWTSTAILLSSCALALSL*FQEHKL
Trigger: CAACTTGTGCTCCTGGAAGCAAAGACTCAGGGCCAG...GGCACAGCTGGATAGCAAGATCGCAGTGGACGTCCATACATCAATTGTCAATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
3UTR-3UTR CAA 90 bp GGAGCTGTGACGTGCTGTGTGCTTCTTCTCTCCAGGGTGGCCTGGAGAAGGCTCACTCACTGTCAGAGCTaGGGGGAATCTACCAGACCT +
Preference number: 3 (lower is better)
Translates to: GAVTCCVLLLSRVAWRRLTHCQS*GESTRP
Trigger: AGGTCTGGTAGATTCCCCCAAGCTCTGACAGTGAGT...GAGCCTTCTCCAGGCCACCCTGGAGAGAAGAAGCACACAGCACGTCACAGCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR TCA 72 bp TTGCCGGCAAAGTCCTCCTGCTGTTCCTTCAGGCGGTaGTGGATATCCCCCAGCTTCAGTGCTGCCTGCTTC +
Preference number: 3 (lower is better)
Translates to: LPAKSSCCSFRR*WISPSFSAACF
Trigger: GAAGCAGGCAGCACTGAAGCTGGGGGATATCCATCACCGCCTGAAGGAACAGCAGGAGGACTTTGCCGGCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR GCA 72 bp CTATCCAGCTGTGCCTTGAGCTCTGTGCATTTGGCCTaGAAGCTCTCCAGCTGCTCCGTGCTTTCCACGAGC +
Preference number: 3 (lower is better)
Translates to: LSSCALSSVHLA*KLSSCSVLSTS
Trigger: GCTCGTGGAAAGCACGGAGCAGCTGGAGAGCTTGCAGGCCAAATGCACAGAGCTCAAGGCACAGCTGGATAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
3UTR-3UTR CAA 90 bp CTGCTGTTCCTTCAGGCGGTGATGGATATCCCCCAGCTTCAGTGCTGCCTGCTTCTGAACGCACATGGCTaGACACAGAGAGCAGCTGTC +
Preference number: 3 (lower is better)
Translates to: LLFLQAVMDIPQLQCCLLLNAHG*TQRAAV
Trigger: GACAGCTGCTCTCTGTGTCAAGCCATGTGCGTTCAG...AAGCAGGCAGCACTGAAGCTGGGGGATATCCATCACCGCCTGAAGGAACAGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR GCA 72 bp CTTCAGGCGGTGATGGATATCCCCCAGCTTCAGTGCTaGCTGCTTCTTGTACCCCTTTACCCTCTCCTCCAG +
Preference number: 3 (lower is better)
Translates to: LQAVMDIPQLQC*LLLVPLYPLLQ
Trigger: CTGGAGGAGAGGGTAAAGGGGTACAAGAAGCAGGCAGCACTGAAGCTGGGGGATATCCATCACCGCCTGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR GCA 72 bp GTAGGTGCTTCACCTCCTTCTGGTACTGAGCTGCTTTaGCGGCAAAGTCCTCCTGCTGTTCCTTCAGGCGGT +
Preference number: 3 (lower is better)
Translates to: VGASPPSGTELL*RQSPPAVPSGG
Trigger: ACCGCCTGAAGGAACAGCAGGAGGACTTTGCCGGCAAAGCAGCTCAGTACCAGAAGGAGGTGAAGCACCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR CCA 72 bp GGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTaGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCC +
Preference number: 3 (lower is better)
Translates to: GLVYFSLAYDTQ*LPRAFLSHWPS
Trigger: GGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
3UTR CCA 72 bp TGGCCTGGAGAAGGCTCCGCATCCTCCTGTTCTCCTTaGCAGTGGACTCCAGGACCATTTCAAGCTCACCTT +
Preference number: 3 (lower is better)
Translates to: WPGEGSASSCSP*QWTPGPFQAHL
Trigger: AAGGTGAGCTTGAAATGGTCCTGGAGTCCACTGCCAAGGAGAACAGGAGGATGCGGAGCCTTCTCCAGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR-3UTR CAA 90 bp TCAAGCTCACCTTCCATATTTCTTTTCTGCTGCAGCGCCTCATCCAGGACCTCCCTGGAAGTCCGCCCCTaGGAGGCAACTCACTGTCAG +
Preference number: 3 (lower is better)
Translates to: SSSPSIFLFCCSASSRTSLEVRP*EATHCQ
Trigger: CTGACAGTGAGTTGCCTCCAAGGGGCGGACTTCCAG...GGAGGTCCTGGATGAGGCGCTGCAGCAGAAAAGAAATATGGAAGGTGAGCTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR-3UTR CAA 90 bp CTTTTGGGATGGCAGTACCTGGTCCCTGTGAGGCACAGTGTATGTAGCATCTCTCTCATTCTGCCAGCTTaGCCGCAGCCTCAGCTCGGA +
Preference number: 3 (lower is better)
Translates to: LLGWQYLVPVRHSVCSISLILPA*PQPQLG
Trigger: TCCGAGCTGAGGCTGCGGCAAAGCTGGCAGAATGAG...AGAGATGCTACATACACTGTGCCTCACAGGGACCAGGTACTGCCATCCCAAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
3UTR TCA 72 bp AGCATCCGATGTAGGTGCTTCACCTCCTTCTGGTACTaGGCTGCTTTGCCGGCAAAGTCCTCCTGCTGTTCC +
Preference number: 3 (lower is better)
Translates to: SIRCRCFTSFWY*AALPAKSSCCS
Trigger: GGAACAGCAGGAGGACTTTGCCGGCAAAGCAGCTCAGTACCAGAAGGAGGTGAAGCACCTACATCGGATGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR TCA 72 bp CTCACCAGCTTTTGGGATGGCAGTACCTGGTCCCTGTaGGGCACAGTGTATGTAGCATCTCTGCCATCTCCC +
Preference number: 3 (lower is better)
Translates to: LTSFWDGSTWSL*GTVYVASLPSP
Trigger: GGGAGATGGCAGAGATGCTACATACACTGTGCCTCACAGGGACCAGGTACTGCCATCCCAAAAGCTGGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
3UTR CCA 72 bp AGACAGGAGATCTACGCCATAGATTCCCCCAGACTCTaGCGGTTGGTGGTAGCCAGAAGCTGCACATCACCA +
Preference number: 3 (lower is better)
Translates to: RQEIYAIDSPRL*RLVVARSCTSP
Trigger: TGGTGATGTGCAGCTTCTGGCTACCACCAACCGCCAGAGTCTGGGGGAATCTATGGCGTAGATCTCCTGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR CCA 72 bp CCACATCCTTCCAGGTGGACTCTGACTCCCTGCAGCTaGTTGACACCTGTGTTTCAGCATCTTCATCCTCCC +
Preference number: 3 (lower is better)
Translates to: PHPSRWTLTPCS*LTPVFQHLHPP
Trigger: GGGAGGATGAAGATGCTGAAACACAGGTGTCAACCAGCTGCAGGGAGTCAGAGTCCACCTGGAAGGATGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
3UTR-3UTR CAA 90 bp CTGTGTGCTTCTTCTCTCCAGGGTGGCCTGGAGAAGGCTCCGCATCCTCCTGTTTTGCCTTTCAGGATTTaGTTGAGGACCCCATGCTTC +
Preference number: 3 (lower is better)
Translates to: LCASSLQGGLEKAPHPPVLPFRI*LRTPCF
Trigger: GAAGCATGGGGTCCTCAACAAAATCCTGAAAGGCAA...AACAGGAGGATGCGGAGCCTTCTCCAGGCCACCCTGGAGAGAAGAAGCACACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR-3UTR CAA 90 bp GTATGGACGTCCACTGCGATCTTGCTATCCAGCTGTGCCTTGAGCTCTGTGCATCCTGGCCCTGAGTCTTaGCTTCCAGGAGCACAAGTT +
Preference number: 3 (lower is better)
Translates to: VWTSTAILLSSCALSSVHPGPES*LPGAQV
Trigger: AACTTGTGCTCCTGGAAGCAAAGACTCAGGGCCAGG...ATGCACAGAGCTCAAGGCACAGCTGGATAGCAAGATCGCAGTGGACGTCCATAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
3UTR TCA 72 bp TGTGATGCCGGGGCTGGTTTATTTCTCCCTTGCCTATaGCACTCAGTGGCTTCCACGGGCCTTCTTGTCACA +
Preference number: 3 (lower is better)
Translates to: CDAGAGLFLPCL*HSVASTGLLVT
Trigger: TGTGACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCATCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
3UTR GCA 72 bp TGTATGGACGTCCACTGCGATCTTGCTATCCAGCTGTaGCTTGAGCTCTGTGCATTTGGCCTGCAAGCTCTC +
Preference number: 3 (lower is better)
Translates to: CMDVHCDLAIQL*LELCAFGLQAL
Trigger: GAGAGCTTGCAGGCCAAATGCACAGAGCTCAAGGCACAGCTGGATAGCAAGATCGCAGTGGACGTCCATACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
3UTR CCA 72 bp GCTTGGGGGAATCTACCAGACCTTTCTGAACGCACATaGCTTGACACAGAGAGCAGCTGTCTTCTCCGACCA +
Preference number: 3 (lower is better)
Translates to: AWGNLPDLSERT*LDTESSCLLRP
Trigger: TGGTCGGAGAAGACAGCTGCTCTCTGTGTCAAGCCATGTGCGTTCAGAAAGGTCTGGTAGATTCCCCCAAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR CCA 72 bp GGAGAAGGCTCCGCATCCTCCTGTTCTCCTTGGCAGTaGACTCCAGGACCATTTCAAGCTCACCTTCCATAT +
Preference number: 3 (lower is better)
Translates to: GEGSASSCSPWQ*TPGPFQAHLPY
Trigger: ATATGGAAGGTGAGCTTGAAATGGTCCTGGAGTCCACTGCCAAGGAGAACAGGAGGATGCGGAGCCTTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR-3UTR CAA 90 bp ACCATTTCAAGCTCACCTTCCATATTTCTTTTCTGCTGCAGCGCCTCATCCAGGACCCTCTCCTCCAGCTaGCCCAGGCGAATGTTGCCT +
Preference number: 3 (lower is better)
Translates to: TISSSPSIFLFCCSASSRTLSSS*PRRMLP
Trigger: AGGCAACATTCGCCTGGGCAAGCTGGAGGAGAGGGT...CCTGGATGAGGCGCTGCAGCAGAAAAGAAATATGGAAGGTGAGCTTGAAATGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR-3UTR CAA 90 bp TTCTCACCAGCTTTTGGGATGGCAGTACCTGGTCCCTGTGAGGCACAGTGTATGACTCCCTGCAGCTGGTaGACACCTGTGTTTCAGCAT +
Preference number: 3 (lower is better)
Translates to: FSPAFGMAVPGPCEAQCMTPCSW*TPVFQH
Trigger: ATGCTGAAACACAGGTGTCAACCAGCTGCAGGGAGT...CATACACTGTGCCTCACAGGGACCAGGTACTGCCATCCCAAAAGCTGGTGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
3UTR TCA 72 bp GAGGAGGAGGAGGAGGAGTCTGAAAGCCAGTCTGGTTaGGGAGCATCATCCTTTCTCACCAGCTTTTGGGAT +
Preference number: 3 (lower is better)
Translates to: EEEEEESESQSG*GASSFLTSFWD
Trigger: ATCCCAAAAGCTGGTGAGAAAGGATGATGCTCCTCAACCAGACTGGCTTTCAGACTCCTCCTCCTCCTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
3UTR GCA 72 bp CATCTCCCACATCCTTCCAGGTGGACTCTGACTCCCTaGAGCTGGTTGACACCTGTGTTTCAGCATCTTCAT +
Preference number: 3 (lower is better)
Translates to: HLPHPSRWTLTP*SWLTPVFQHLH
Trigger: ATGAAGATGCTGAAACACAGGTGTCAACCAGCTGCAGGGAGTCAGAGTCCACCTGGAAGGATGTGGGAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
3UTR TCA 72 bp GCTTGCCCAGGCGAATGTTGCCTTTCAGGATTTTGTTaGGGACCCCATGCTTCTCGCTCTCTAAACACTGAG +
Preference number: 3 (lower is better)
Translates to: ACPGECCLSGFC*GPHASRSLNTE
Trigger: CTCAGTGTTTAGAGAGCGAGAAGCATGGGGTCCTCAACAAAATCCTGAAAGGCAACATTCGCCTGGGCAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR GCA 72 bp AGGACCATTTCAAGCTCACCTTCCATATTTCTTTTCTaGTGCAGCGCCTCATCCAGGACCTCCTGCTTTTCC +
Preference number: 3 (lower is better)
Translates to: RTISSSPSIFLF*CSASSRTSCFS
Trigger: GGAAAAGCAGGAGGTCCTGGATGAGGCGCTGCAGCAGAAAAGAAATATGGAAGGTGAGCTTGAAATGGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR CCA 72 bp TGCAACTGGCTTTTTAGTTCATTGACAATTGATGTATaGACGTCCACTGCGATCTTGCTATCCAGCTGTGCC +
Preference number: 3 (lower is better)
Translates to: CNWLFSSLTIDV*TSTAILLSSCA
Trigger: GGCACAGCTGGATAGCAAGATCGCAGTGGACGTCCATACATCAATTGTCAATGAACTAAAAAGCCAGTTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR GCA 90 bp AGTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTCCGAGGAGGGGGTGTaGGTGGCACCGCTGGCTTCG +
Preference number: 4 (lower is better)
Translates to: SGFHGPSCHTGPPEERRKSEEGV*VAPLAS
Trigger: CGAAGCCAGCGGTGCCACGCACACCCCCTCCTCGGA...CTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp TCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGACACCGGAGCGATGCTGGCTaGGGGGAGGAAGCCATGGAT +
Preference number: 4 (lower is better)
Translates to: STGLLVTLALLRRGGSRHRSDAG*GEEAMD
Trigger: ATCCATGGCTTCCTCCCCGCAGCCAGCATCGCTCCG...GTGTCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp CTGCCAGCTTTGCCGCAGCCTCAGCTCGGAAGTGGTGGCGTAAGGCTTGATGAACGGAGCGATGCTGGCTaGGGGGAGGAAGCCATGGAT +
Preference number: 4 (lower is better)
Translates to: LPALPQPQLGSGGVRLDERSDAG*GEEAMD
Trigger: ATCCATGGCTTCCTCCCCGCAGCCAGCATCGCTCCG...TTCATCAAGCCTTACGCCACCACTTCCGAGCTGAGGCTGCGGCAAAGCTGGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
CDS-3UTR GCA 90 bp TCCAGGACCTCCTGCTTTTCCTGCAGCATCCGATGTAGGTGCTTCACCTCCTTCTCCGAGGAGGGGGTGTaGGTGGCACCGCTGGCTTCG +
Preference number: 4 (lower is better)
Translates to: SRTSCFSCSIRCRCFTSFSEEGV*VAPLAS
Trigger: CGAAGCCAGCGGTGCCACGCACACCCCCTCCTCGGA...GAAGGAGGTGAAGCACCTACATCGGATGCTGCAGGAAAAGCAGGAGGTCCTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp GCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGAGAAACGTCCTGGAGGTaGGCCTGGTGGGTGTCCCTG +
Preference number: 4 (lower is better)
Translates to: ASTGLLVTLALLRRGGSRETSWR*AWWVSL
Trigger: CAGGGACACCCACCAGGCGCACCTCCAGGACGTTTC...TCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp CCTGCTGTTCCTTCAGGCGGTGATGGATATCCCCCAGCTTCAGTGCTGCCTGCTTCTCTGGAGAAGGGTTaGGGCTCCGAGGAGGGGGTG +
Preference number: 4 (lower is better)
Translates to: PAVPSGGDGYPPASVLPASLEKG*GSEEGV
Trigger: CACCCCCTCCTCGGAGCCCCAACCCTTCTCCAGAGA...AGCAGGCAGCACTGAAGCTGGGGGATATCCATCACCGCCTGAAGGAACAGCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp GCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGAAGACCTGGGCCTCTCTaGAGAAGGGTTGGGGCTCCG +
Preference number: 4 (lower is better)
Translates to: ASTGLLVTLALLRRGGSRRPGPL*RRVGAP
Trigger: CGGAGCCCCAACCCTTCTCCAGAGAGGCCCAGGTCT...TCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp GTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTGGCGAGGCTGGGGAATaGCAACTGTCTGCCCAGTCA +
Preference number: 4 (lower is better)
Translates to: VASTGLLVTLALLRRGGSGEAGE*QLSAQS
Trigger: TGACTGGGCAGACAGTTGCCATTCCCCAGCCTCGCC...ACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp TTTGCCGGCAAAGTCCTCCTGCTGTTCCTTCAGGCGGTGATGGATATCCCCCAGCGGAGCGATGCTGGCTaGGGGGAGGAAGCCATGGAT +
Preference number: 4 (lower is better)
Translates to: FAGKVLLLFLQAVMDIPQRSDAG*GEEAMD
Trigger: ATCCATGGCTTCCTCCCCGCAGCCAGCATCGCTCCG...CTGGGGGATATCCATCACCGCCTGAAGGAACAGCAGGAGGACTTTGCCGGCAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp CTGTGTGCTTCTTCTCTCCAGGGTGGCCTGGAGAAGGCTCCGCATCCTCCTGTTCAGCCAGAGCAGACCTaGGCCTCTCTGGAGAAGGGT +
Preference number: 4 (lower is better)
Translates to: LCASSLQGGLEKAPHPPVQPEQT*ASLEKG
Trigger: ACCCTTCTCCAGAGAGGCCCAGGTCTGCTCTGGCTG...AACAGGAGGATGCGGAGCCTTCTCCAGGCCACCCTGGAGAGAAGAAGCACACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp CTGCCAGCTTTGCCGCAGCCTCAGCTCGGAAGTGGTGGCGTAAGGCTTGATGAACAGCCAGAGCAGACCTaGGCCTCTCTGGAGAAGGGT +
Preference number: 4 (lower is better)
Translates to: LPALPQPQLGSGGVRLDEQPEQT*ASLEKG
Trigger: ACCCTTCTCCAGAGAGGCCCAGGTCTGCTCTGGCTG...TTCATCAAGCCTTACGCCACCACTTCCGAGCTGAGGCTGCGGCAAAGCTGGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
CDS-3UTR CCA 90 bp GGAGCTGTGACGTGCTGTGTGCTTCTTCTCTCCAGGGTGGCCTGGAGAAGGCTCGATCTCTGGCGAGGCTaGGGAATGGCAACTGTCTGC +
Preference number: 4 (lower is better)
Translates to: GAVTCCVLLLSRVAWRRLDLWRG*GMATVC
Trigger: GCAGACAGTTGCCATTCCCCAGCCTCGCCAGAGATC...GAGCCTTCTCCAGGCCACCCTGGAGAGAAGAAGCACACAGCACGTCACAGCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp CCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTGGAGGTGCGCCTGGTaGGTGTCCCTGGCTTTTGCT +
Preference number: 4 (lower is better)
Translates to: PGLVYFSLAYDTQWLPRAWRCAW*VSLAFA
Trigger: AGCAAAAGCCAGGGACACCCACCAGGCGCACCTCCA...GGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp GTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTCGCTCAGTTCACAGCTaGGGGCTTGGTTTGCAGAGT +
Preference number: 4 (lower is better)
Translates to: VASTGLLVTLALLRRGGSRSVHS*GLGLQS
Trigger: ACTCTGCAAACCAAGCCCTCAGCTGTGAACTGAGCG...ACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp AGTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTGGACTCTGACTCCCTaGAGCTGGTTGACACCTGTG +
Preference number: 4 (lower is better)
Translates to: SGFHGPSCHTGPPEERRKWTLTP*SWLTPV
Trigger: CACAGGTGTCAACCAGCTGCAGGGAGTCAGAGTCCA...CTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp ATGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGAAACGTCCTGGAGGTaGGCCTGGTGGGTGTCCCTG +
Preference number: 4 (lower is better)
Translates to: MPGLVYFSLAYDTQWLPRETSWR*AWWVSL
Trigger: CAGGGACACCCACCAGGCGCACCTCCAGGACGTTTC...CCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp GGAGCTGTGACGTGCTGTGTGCTTCTTCTCTCCAGGGTGGCCTGGAGAAGGCTCTCTGTGCATTTGGCCTaGAAGCTCTCCAGCTGCTCC +
Preference number: 4 (lower is better)
Translates to: GAVTCCVLLLSRVAWRRLSVHLA*KLSSCS
Trigger: GGAGCAGCTGGAGAGCTTGCAGGCCAAATGCACAGA...GAGCCTTCTCCAGGCCACCCTGGAGAGAAGAAGCACACAGCACGTCACAGCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp GGATGGCAGTACCTGGTCCCTGTGAGGCACAGTGTATGTAGCATCTCTGCCATCTCTCTGGAGAAGGGTTaGGGCTCCGAGGAGGGGGTG +
Preference number: 4 (lower is better)
Translates to: GWQYLVPVRHSVCSISAISLEKG*GSEEGV
Trigger: CACCCCCTCCTCGGAGCCCCAACCCTTCTCCAGAGA...GATGGCAGAGATGCTACATACACTGTGCCTCACAGGGACCAGGTACTGCCATCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
CDS-3UTR CCA 90 bp GAGCTGCTTTGCCGGCAAAGTCCTCCTGCTGTTCCTTCAGGCGGTGATGGATATAGACCTGGGCCTCTCTaGAGAAGGGTTGGGGCTCCG +
Preference number: 4 (lower is better)
Translates to: ELLCRQSPPAVPSGGDGYRPGPL*RRVGAP
Trigger: CGGAGCCCCAACCCTTCTCCAGAGAGGCCCAGGTCT...ATATCCATCACCGCCTGAAGGAACAGCAGGAGGACTTTGCCGGCAAAGCAGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp CCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCCCACATCCTTCCAGGTaGACTCTGACTCCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: PGLVYFSLAYDTQWLPRAPHPSR*TLTPCS
Trigger: GCTGCAGGGAGTCAGAGTCCACCTGGAAGGATGTGG...GGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp GCTTCTTCTCTCCAGGGTGGCCTGGAGAAGGCTCCGCATCCTCCTGTTCTCCTTCCACATCCTTCCAGGTaGACTCTGACTCCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: ASSLQGGLEKAPHPPVLLPHPSR*TLTPCS
Trigger: GCTGCAGGGAGTCAGAGTCCACCTGGAAGGATGTGG...AAGGAGAACAGGAGGATGCGGAGCCTTCTCCAGGCCACCCTGGAGAGAAGAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp CCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCGTGGTGTGGGGCCCTTaGATGGGAGGCCTTGGATAT +
Preference number: 4 (lower is better)
Translates to: PGLVYFSLAYDTQWLPRAVVWGP*MGGLGY
Trigger: ATATCCAAGGCCTCCCATCCAAGGGCCCCACACCAC...GGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp GCGCCTCATCCAGGACCTCCTGCTTTTCCTGCAGCATCCGATGTAGGTGCTTCAATCCACCAACCAGGGTaGTGTGGGGCCCTTGGATGG +
Preference number: 4 (lower is better)
Translates to: APHPGPPAFPAASDVGASIHQPG*CGALGW
Trigger: CCATCCAAGGGCCCCACACCACCCTGGTTGGTGGAT...TGAAGCACCTACATCGGATGCTGCAGGAAAAGCAGGAGGTCCTGGATGAGGCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp CCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCGGTGTGACTCCTTCCTaGCAGGAAGCCTTTTCCGTC +
Preference number: 4 (lower is better)
Translates to: PGLVYFSLAYDTQWLPRAGVTPS*QEAFSV
Trigger: GACGGAAAAGGCTTCCTGTCAGGAAGGAGTCACACC...GGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp GCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGACCTCCAGGGCGGTGCTaGGTTTGTCCTTCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: ASTGLLVTLALLRRGGSRPPGRC*VCPSLS
Trigger: TGAAAGAGAAGGACAAACTCAGCACCGCCCTGGAGG...TCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp CCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTGCTTTTCCTGGCCCTaGGTCTTTGCTTCCAGGAGC +
Preference number: 4 (lower is better)
Translates to: PGLVYFSLAYDTQWLPRACFSWP*VFASRS
Trigger: GCTCCTGGAAGCAAAGACTCAGGGCCAGGAAAAGCA...GGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp TCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGACACTTTGCCAGGTACTGGTaGGCAGACATCTCCTTCCCC +
Preference number: 4 (lower is better)
Translates to: STGLLVTLALLRRGGSRHFARYW*ADISFP
Trigger: GGGGAAGGAGATGTCTGCTCACCAGTACCTGGCAAA...GTGTCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS-3UTR TCA 90 bp CCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTTGCCAGGTACTGGTaGGCAGACATCTCCTTCCCC +
Preference number: 4 (lower is better)
Translates to: PGLVYFSLAYDTQWLPRAFARYW*ADISFP
Trigger: GGGGAAGGAGATGTCTGCTCACCAGTACCTGGCAAA...GGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS-3UTR GCA 90 bp AGTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGCTGGCCCTGAGTCTTTaGTTCCAGGAGCACAAGTTG +
Preference number: 4 (lower is better)
Translates to: SGFHGPSCHTGPPEERRKLALSL*FQEHKL
Trigger: CAACTTGTGCTCCTGGAAGCAAAGACTCAGGGCCAG...CTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp CCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTCTGTGCATTTGGCCTaGAAGCTCTCCAGCTGCTCC +
Preference number: 4 (lower is better)
Translates to: PGLVYFSLAYDTQWLPRASVHLA*KLSSCS
Trigger: GGAGCAGCTGGAGAGCTTGCAGGCCAAATGCACAGA...GGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp TCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGACACCAAGCCCACCAGGTTTaGCAGGTACTGGTGAGCAGA +
Preference number: 4 (lower is better)
Translates to: STGLLVTLALLRRGGSRHQAHQV*QVLVSR
Trigger: TCTGCTCACCAGTACCTGGCAAACCTGGTGGGCTTG...GTGTCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS-3UTR GCA 90 bp GCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGAGGTACTGAGCTGCTTTaGCGGCAAAGTCCTCCTGCT +
Preference number: 4 (lower is better)
Translates to: ASTGLLVTLALLRRGGSRGTELL*RQSPPA
Trigger: AGCAGGAGGACTTTGCCGGCAAAGCAGCTCAGTACC...TCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000150421.2
CDS-3UTR GCA 90 bp AGTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGACCTCCTGCTTTTCCTaGAGCATCCGATGTAGGTGC +
Preference number: 4 (lower is better)
Translates to: SGFHGPSCHTGPPEERRKTSCFS*SIRCRC
Trigger: GCACCTACATCGGATGCTGCAGGAAAAGCAGGAGGT...CTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000150421.2
CDS-3UTR GCA 90 bp TCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGACACCCCCAGCTTCAGTGCTaGCTGCTTCTTGTACCCCAA +
Preference number: 4 (lower is better)
Translates to: STGLLVTLALLRRGGSRHPQLQC*LLLVPQ
Trigger: TTGGGGTACAAGAAGCAGGCAGCACTGAAGCTGGGG...GTGTCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150421.2
CDS-3UTR CCA 90 bp GTGAGGCACAGTGTATGTAGCATCTCTGCCATCTCCCACATCCTTCCAGGTGGAAGACCTGGGCCTCTCTaGAGAAGGGTTGGGGCTCCG +
Preference number: 4 (lower is better)
Translates to: VRHSVCSISAISHILPGGRPGPL*RRVGAP
Trigger: CGGAGCCCCAACCCTTCTCCAGAGAGGCCCAGGTCT...TCCACCTGGAAGGATGTGGGAGATGGCAGAGATGCTACATACACTGTGCCTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
CDS-3UTR CCA 90 bp ATGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGCAGCCAGAGCAGACCTaGGCCTCTCTGGAGAAGGGT +
Preference number: 4 (lower is better)
Translates to: MPGLVYFSLAYDTQWLPRQPEQT*ASLEKG
Trigger: ACCCTTCTCCAGAGAGGCCCAGGTCTGCTCTGGCTG...CCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp ATGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGACGTGGTTGCCAGGATaGCTGCAGCCAGAGCAGACC +
Preference number: 4 (lower is better)
Translates to: MPGLVYFSLAYDTQWLPRTWLPG*LQPEQT
Trigger: GGTCTGCTCTGGCTGCAGCCATCCTGGCAACCACGT...CCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp AGTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTCTACCAGCTACATCTaGGGAGGGAGGAGGCTTTTC +
Preference number: 4 (lower is better)
Translates to: SGFHGPSCHTGPPEERRKSTSYI*GGRRLF
Trigger: GAAAAGCCTCCTCCCTCCCCAGATGTAGCTGGTAGA...CTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp CCTGGAGAAGGCTCCGCATCCTCCTGTTCTCCTTGGCAGTGGACTCCAGGACCATCTACCAGCTACATCTaGGGAGGGAGGAGGCTTTTC +
Preference number: 4 (lower is better)
Translates to: PGEGSASSCSPWQWTPGPSTSYI*GGRRLF
Trigger: GAAAAGCCTCCTCCCTCCCCAGATGTAGCTGGTAGA...TGGTCCTGGAGTCCACTGCCAAGGAGAACAGGAGGATGCGGAGCCTTCTCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp GGAGCTGTGACGTGCTGTGTGCTTCTTCTCTCCAGGGTGGCCTGGAGAAGGCTCGGGAGGCCTTGGATATaGGAACTCTCTTCCTCAGAC +
Preference number: 4 (lower is better)
Translates to: GAVTCCVLLLSRVAWRRLGRPWI*ELSSSD
Trigger: GTCTGAGGAAGAGAGTTCCCATATCCAAGGCCTCCC...GAGCCTTCTCCAGGCCACCCTGGAGAGAAGAAGCACACAGCACGTCACAGCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp TTGAGCTCTGTGCATTTGGCCTGCAAGCTCTCCAGCTGCTCCGTGCTTTCCACGGTGGTGTGGGGCCCTTaGATGGGAGGCCTTGGATAT +
Preference number: 4 (lower is better)
Translates to: LSSVHLACKLSSCSVLSTVVWGP*MGGLGY
Trigger: ATATCCAAGGCCTCCCATCCAAGGGCCCCACACCAC...CGTGGAAAGCACGGAGCAGCTGGAGAGCTTGCAGGCCAAATGCACAGAGCTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR CCA 90 bp GTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTCCTGGTGGGTGTCCCTaGCTTTTGCTTGCTGAATCT +
Preference number: 4 (lower is better)
Translates to: VASTGLLVTLALLRRGGSPGGCP*LLLAES
Trigger: AGATTCAGCAAGCAAAAGCCAGGGACACCCACCAGG...ACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp CATCCAGGACCTCCTGCTTTTCCTGCAGCATCCGATGTAGGTGCTTCACCTCCTTGGAGGTGCGCCTGGTaGGTGTCCCTGGCTTTTGCT +
Preference number: 4 (lower is better)
Translates to: HPGPPAFPAASDVGASPPWRCAW*VSLAFA
Trigger: AGCAAAAGCCAGGGACACCCACCAGGCGCACCTCCA...AGGAGGTGAAGCACCTACATCGGATGCTGCAGGAAAAGCAGGAGGTCCTGGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp CGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTCTAGCGCTCTGTTCCTaGTGGCCCAGCTGCTCTTCT +
Preference number: 4 (lower is better)
Translates to: RGWFISPLPMTLSGFHGPLALCS*WPSCSS
Trigger: AGAAGAGCAGCTGGGCCACCAGGAACAGAGCGCTAG...AGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp TCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGACACTCCTCCTGTTCTCCTTaGCAGTGGACTCCAGGACCA +
Preference number: 4 (lower is better)
Translates to: STGLLVTLALLRRGGSRHSSCSP*QWTPGP
Trigger: TGGTCCTGGAGTCCACTGCCAAGGAGAACAGGAGGA...GTGTCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000150421.2
CDS-3UTR TCA 90 bp CCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCAGTACCTGGTCCCTGTaGGGCACAGTGTATGTAGCA +
Preference number: 4 (lower is better)
Translates to: PGLVYFSLAYDTQWLPRASTWSL*GTVYVA
Trigger: TGCTACATACACTGTGCCTCACAGGGACCAGGTACT...GGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp ATGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGGAGGAGGAGGAGTCTaGAAGCCAGTCTGGTTGAGG +
Preference number: 4 (lower is better)
Translates to: MPGLVYFSLAYDTQWLPRGGGGV*KPVWLR
Trigger: CCTCAACCAGACTGGCTTTCAGACTCCTCCTCCTCC...CCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp TGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGGGAATGGCAACTGTCTaGCCAGTCAACGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: CRGWFISPLPMTLSGFHGGMATV*PVNVVA
Trigger: GGCAACCACGTTGACTGGGCAGACAGTTGCCATTCC...CCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp GCGCCTCATCCAGGACCTCCTGCTTTTCCTGCAGCATCCGATGTAGGTGCTTCATCATTCTGCCAGCTTTaGCGCAGCCTCAGCTCGGAA +
Preference number: 4 (lower is better)
Translates to: APHPGPPAFPAASDVGASSFCQL*RSLSSE
Trigger: TTCCGAGCTGAGGCTGCGGCAAAGCTGGCAGAATGA...TGAAGCACCTACATCGGATGCTGCAGGAAAAGCAGGAGGTCCTGGATGAGGCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp TGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGTGGACTCTGACTCCCTaGAGCTGGTTGACACCTGTG +
Preference number: 4 (lower is better)
Translates to: CRGWFISPLPMTLSGFHGWTLTP*SWLTPV
Trigger: CACAGGTGTCAACCAGCTGCAGGGAGTCAGAGTCCA...CCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp CTTCTTCTCTCCAGGGTGGCCTGGAGAAGGCTCCGCATCCTCCTGTTCTCCTTGCTGGCCCTGAGTCTTTaGTTCCAGGAGCACAAGTTG +
Preference number: 4 (lower is better)
Translates to: LLLSRVAWRRLRILLFSLLALSL*FQEHKL
Trigger: CAACTTGTGCTCCTGGAAGCAAAGACTCAGGGCCAG...CAAGGAGAACAGGAGGATGCGGAGCCTTCTCCAGGCCACCCTGGAGAGAAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp CGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTCAAGCCCACCAGGTTTaGCAGGTACTGGTGAGCAGA +
Preference number: 4 (lower is better)
Translates to: RGWFISPLPMTLSGFHGPQAHQV*QVLVSR
Trigger: TCTGCTCACCAGTACCTGGCAAACCTGGTGGGCTTG...AGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS-3UTR GCA 90 bp CGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTGGTACTGAGCTGCTTTaGCGGCAAAGTCCTCCTGCT +
Preference number: 4 (lower is better)
Translates to: RGWFISPLPMTLSGFHGPGTELL*RQSPPA
Trigger: AGCAGGAGGACTTTGCCGGCAAAGCAGCTCAGTACC...AGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000150421.2
CDS-3UTR GCA 90 bp GTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTGGTTCTTGCTGGCTGTaGGCTTCTCCAGCATCAAAT +
Preference number: 4 (lower is better)
Translates to: VASTGLLVTLALLRRGGSGSCWL*ASPASN
Trigger: ATTTGATGCTGGAGAAGCGCACAGCCAGCAAGAACC...ACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp TTTGCCGGCAAAGTCCTCCTGCTGTTCCTTCAGGCGGTGATGGATATCCCCCAGGCGGGGAGGAAGCCATaGATGATGTGGTTGAACTGG +
Preference number: 4 (lower is better)
Translates to: FAGKVLLLFLQAVMDIPQAGRKP*MMWLNW
Trigger: CCAGTTCAACCACATCATCCATGGCTTCCTCCCCGC...CTGGGGGATATCCATCACCGCCTGAAGGAACAGCAGGAGGACTTTGCCGGCAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp TGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTTGTGCGTGGCACCGCTaGCTTCGGAGCGATGCTGGC +
Preference number: 4 (lower is better)
Translates to: WFISPLPMTLSGFHGPSCCAWHR*LRSDAG
Trigger: GCCAGCATCGCTCCGAAGCCAGCGGTGCCACGCACA...ACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp CTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTCTCTGGAGAAGGGTTaGGGCTCCGAGGAGGGGGTG +
Preference number: 4 (lower is better)
Translates to: LVYFSLAYDTQWLPRAFLSLEKG*GSEEGV
Trigger: CACCCCCTCCTCGGAGCCCCAACCCTTCTCCAGAGA...CAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp GGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTACGTGGTTGCCAGGATaGCTGCAGCCAGAGCAGACC +
Preference number: 4 (lower is better)
Translates to: GWFISPLPMTLSGFHGPSTWLPG*LQPEQT
Trigger: GGTCTGCTCTGGCTGCAGCCATCCTGGCAACCACGT...AGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp ATGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGTGTGGGGCCCTTGGATaGGAGGCCTTGGATATGGGA +
Preference number: 4 (lower is better)
Translates to: MPGLVYFSLAYDTQWLPRCGALG*EALDMG
Trigger: TCCCATATCCAAGGCCTCCCATCCAAGGGCCCCACA...CCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp TCCAGGACCTCCTGCTTTTCCTGCAGCATCCGATGTAGGTGCTTCACCTCCTTCTGTGGGGCCCTTGGATaGGAGGCCTTGGATATGGGA +
Preference number: 4 (lower is better)
Translates to: SRTSCFSCSIRCRCFTSFCGALG*EALDMG
Trigger: TCCCATATCCAAGGCCTCCCATCCAAGGGCCCCACA...GAAGGAGGTGAAGCACCTACATCGGATGCTGCAGGAAAAGCAGGAGGTCCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp TGTATGGACGTCCACTGCGATCTTGCTATCCAGCTGTGCCTTGAGCTCTGTGCAATCCACCAACCAGGGTaGTGTGGGGCCCTTGGATGG +
Preference number: 4 (lower is better)
Translates to: CMDVHCDLAIQLCLELCAIHQPG*CGALGW
Trigger: CCATCCAAGGGCCCCACACCACCCTGGTTGGTGGAT...TGCACAGAGCTCAAGGCACAGCTGGATAGCAAGATCGCAGTGGACGTCCATACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR CCA 90 bp TGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGTCCTCCTGTTCTCCTTaGCAGTGGACTCCAGGACCA +
Preference number: 4 (lower is better)
Translates to: CRGWFISPLPMTLSGFHGSSCSP*QWTPGP
Trigger: TGGTCCTGGAGTCCACTGCCAAGGAGAACAGGAGGA...CCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079414.12
CDS-3UTR TCA 90 bp CCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCGAAAGCCAGTCTGGTTaGGGAGCATCATCCTTTCTC +
Preference number: 4 (lower is better)
Translates to: PGLVYFSLAYDTQWLPRAESQSG*GASSFL
Trigger: GAGAAAGGATGATGCTCCTCAACCAGACTGGCTTTC...GGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp TCCAGGACCTCCTGCTTTTCCTGCAGCATCCGATGTAGGTGCTTCACCTCCTTCTTTGCCAGGTACTGGTaGGCAGACATCTCCTTCCCC +
Preference number: 4 (lower is better)
Translates to: SRTSCFSCSIRCRCFTSFFARYW*ADISFP
Trigger: GGGGAAGGAGATGTCTGCTCACCAGTACCTGGCAAA...GAAGGAGGTGAAGCACCTACATCGGATGCTGCAGGAAAAGCAGGAGGTCCTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp ATGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGGAATGGCAACTGTCTaGCCAGTCAACGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: MPGLVYFSLAYDTQWLPRGMATV*PVNVVA
Trigger: GGCAACCACGTTGACTGGGCAGACAGTTGCCATTCC...CCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp CCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCGGTGTCCCTGGCTTTTaGTTGCTGAATCTCCAACTG +
Preference number: 4 (lower is better)
Translates to: PGLVYFSLAYDTQWLPRAGVPGF*LLNLQL
Trigger: CAGTTGGAGATTCAGCAAGCAAAAGCCAGGGACACC...GGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp ATGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGCAAGCCCACCAGGTTTaGCAGGTACTGGTGAGCAGA +
Preference number: 4 (lower is better)
Translates to: MPGLVYFSLAYDTQWLPRQAHQV*QVLVSR
Trigger: TCTGCTCACCAGTACCTGGCAAACCTGGTGGGCTTG...CCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp GCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGAAGCTTCAGTGCTGCCTaGTTCTTGTACCCCTTTACC +
Preference number: 4 (lower is better)
Translates to: ASTGLLVTLALLRRGGSRSFSAA*FLYPFT
Trigger: GGTAAAGGGGTACAAGAAGCAGGCAGCACTGAAGCT...TCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079414.12
CDS-3UTR CCA 90 bp ATGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGAAGCCATGGATGATGTaGTTGAACTGGCTCCGGCGG +
Preference number: 4 (lower is better)
Translates to: MPGLVYFSLAYDTQWLPRKPWMM*LNWLRR
Trigger: CCGCCGGAGCCAGTTCAACCACATCATCCATGGCTT...CCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp GCCAGTCTGGTTGAGGAGCATCATCCTTTCTCACCAGCTTTTGGGATGGCAGTAACGTGGTTGCCAGGATaGCTGCAGCCAGAGCAGACC +
Preference number: 4 (lower is better)
Translates to: ASLVEEHHPFSPAFGMAVTWLPG*LQPEQT
Trigger: GGTCTGCTCTGGCTGCAGCCATCCTGGCAACCACGT...TACTGCCATCCCAAAAGCTGGTGAGAAAGGATGATGCTCCTCAACCAGACTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
CDS-3UTR CCA 90 bp CCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTGGATGGGAGGCCTTaGATATGGGAACTCTCTTCC +
Preference number: 4 (lower is better)
Translates to: PGLVYFSLAYDTQWLPRALDGRP*IWELSS
Trigger: GGAAGAGAGTTCCCATATCCAAGGCCTCCCATCCAA...GGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp AGCTCTGTGCATTTGGCCTGCAAGCTCTCCAGCTGCTCCGTGCTTTCCACGAGCTTGGATGGGAGGCCTTaGATATGGGAACTCTCTTCC +
Preference number: 4 (lower is better)
Translates to: SSVHLACKLSSCSVLSTSLDGRP*IWELSS
Trigger: GGAAGAGAGTTCCCATATCCAAGGCCTCCCATCCAA...GCTCGTGGAAAGCACGGAGCAGCTGGAGAGCTTGCAGGCCAAATGCACAGAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR CCA 90 bp TGTATGGACGTCCACTGCGATCTTGCTATCCAGCTGTGCCTTGAGCTCTGTGCATGTGGGGCCCTTGGATaGGAGGCCTTGGATATGGGA +
Preference number: 4 (lower is better)
Translates to: CMDVHCDLAIQLCLELCACGALG*EALDMG
Trigger: TCCCATATCCAAGGCCTCCCATCCAAGGGCCCCACA...TGCACAGAGCTCAAGGCACAGCTGGATAGCAAGATCGCAGTGGACGTCCATACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR CCA 90 bp CTGCTGTTCCTTCAGGCGGTGATGGATATCCCCCAGCTTCAGTGCTGCCTGCTTCCTGGTGGGTGTCCCTaGCTTTTGCTTGCTGAATCT +
Preference number: 4 (lower is better)
Translates to: LLFLQAVMDIPQLQCCLLPGGCP*LLLAES
Trigger: AGATTCAGCAAGCAAAAGCCAGGGACACCCACCAGG...AAGCAGGCAGCACTGAAGCTGGGGGATATCCATCACCGCCTGAAGGAACAGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp CTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTCCTGGAGGTGCGCCTaGTGGGTGTCCCTGGCTTTT +
Preference number: 4 (lower is better)
Translates to: LVYFSLAYDTQWLPRAFLSWRCA*WVSLAF
Trigger: AAAAGCCAGGGACACCCACCAGGCGCACCTCCAGGA...CAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp AGTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTGTTCTCCTTGGCAGTaGACTCCAGGACCATTTCAA +
Preference number: 4 (lower is better)
Translates to: SGFHGPSCHTGPPEERRKCSPWQ*TPGPFQ
Trigger: TTGAAATGGTCCTGGAGTCCACTGCCAAGGAGAACA...CTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000150421.2
3UTR CAA 72 bp ATCTTGCTATCCAGCTGTGCCTTGAGCTCTGTGCATTaGGCCTGCAAGCTCTCCAGCTGCTCCGTGCTTTCC +
Preference number: 4 (lower is better)
Translates to: ILLSSCALSSVH*ACKLSSCSVLS
Trigger: GGAAAGCACGGAGCAGCTGGAGAGCTTGCAGGCCAAATGCACAGAGCTCAAGGCACAGCTGGATAGCAAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR TCA 90 bp CCCAGGCGAATGTTGCCTTTCAGGATTTTGTTGAGGACCCCATGCTTCTCGCTCCGCTCAGTTCACAGCTaGGGGCTTGGTTTGCAGAGT +
Preference number: 4 (lower is better)
Translates to: PRRMLPFRILLRTPCFSLRSVHS*GLGLQS
Trigger: ACTCTGCAAACCAAGCCCTCAGCTGTGAACTGAGCG...GAGCGAGAAGCATGGGGTCCTCAACAAAATCCTGAAAGGCAACATTCGCCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp GCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGAAAAGCAATTCAGGTGTaGCTCCTTCCTGACAGGAAG +
Preference number: 4 (lower is better)
Translates to: ASTGLLVTLALLRRGGSRKAIQV*LLPDRK
Trigger: CTTCCTGTCAGGAAGGAGTCACACCTGAATTGCTTT...TCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp GGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTCCTCCAGGGCGGTGCTaGGTTTGTCCTTCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: GWFISPLPMTLSGFHGPSPPGRC*VCPSLS
Trigger: TGAAAGAGAAGGACAAACTCAGCACCGCCCTGGAGG...AGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp GGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTCATTCTGCCAGCTTTaGCGCAGCCTCAGCTCGGAA +
Preference number: 4 (lower is better)
Translates to: GWFISPLPMTLSGFHGPSSFCQL*RSLSSE
Trigger: TTCCGAGCTGAGGCTGCGGCAAAGCTGGCAGAATGA...AGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp CTGTGTGCTTCTTCTCTCCAGGGTGGCCTGGAGAAGGCTCCGCATCCTCCTGTTCTTGCTATCCAGCTGTaGCTTGAGCTCTGTGCATTT +
Preference number: 4 (lower is better)
Translates to: LCASSLQGGLEKAPHPPVLAIQL*LELCAF
Trigger: AAATGCACAGAGCTCAAGGCACAGCTGGATAGCAAG...AACAGGAGGATGCGGAGCCTTCTCCAGGCCACCCTGGAGAGAAGAAGCACACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp TGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTTCCTGGTGGCCCAGCTaGTCTTCTCCAGAAGCAGGC +
Preference number: 4 (lower is better)
Translates to: WFISPLPMTLSGFHGPSCSWWPS*SSPEAG
Trigger: GCCTGCTTCTGGAGAAGAGCAGCTGGGCCACCAGGA...ACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp CCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTGTTGAGGACCCCATaGTTCTCGCTCTCTAAACAC +
Preference number: 4 (lower is better)
Translates to: PGLVYFSLAYDTQWLPRALLRTP*FSLSKH
Trigger: GTGTTTAGAGAGCGAGAAGCATGGGGTCCTCAACAA...GGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079414.12
CDS-3UTR GCA 90 bp GCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGATCCATATTTCTTTTCTaGTGCAGCGCCTCATCCAGG +
Preference number: 4 (lower is better)
Translates to: ASTGLLVTLALLRRGGSRSIFLF*CSASSR
Trigger: CCTGGATGAGGCGCTGCAGCAGAAAAGAAATATGGA...TCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000150421.2
CDS-3UTR GCA 90 bp TCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGACACTCCATATTTCTTTTCTaGTGCAGCGCCTCATCCAGG +
Preference number: 4 (lower is better)
Translates to: STGLLVTLALLRRGGSRHSIFLF*CSASSR
Trigger: CCTGGATGAGGCGCTGCAGCAGAAAAGAAATATGGA...GTGTCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000150421.2
CDS-3UTR CCA 90 bp GGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTGCGGGGAGGAAGCCATaGATGATGTGGTTGAACTGG +
Preference number: 4 (lower is better)
Translates to: GWFISPLPMTLSGFHGPSAGRKP*MMWLNW
Trigger: CCAGTTCAACCACATCATCCATGGCTTCCTCCCCGC...AGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp TGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTGGCGAGGCTGGGGAATaGCAACTGTCTGCCCAGTCA +
Preference number: 4 (lower is better)
Translates to: WFISPLPMTLSGFHGPSCGEAGE*QLSAQS
Trigger: TGACTGGGCAGACAGTTGCCATTCCCCAGCCTCGCC...ACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp ATGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGGGAGGCCTTGGATATaGGAACTCTCTTCCTCAGAC +
Preference number: 4 (lower is better)
Translates to: MPGLVYFSLAYDTQWLPRGRPWI*ELSSSD
Trigger: GTCTGAGGAAGAGAGTTCCCATATCCAAGGCCTCCC...CCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp TGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTATCCACCAACCAGGGTaGTGTGGGGCCCTTGGATGG +
Preference number: 4 (lower is better)
Translates to: WFISPLPMTLSGFHGPSCIHQPG*CGALGW
Trigger: CCATCCAAGGGCCCCACACCACCCTGGTTGGTGGAT...ACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp TCAAGCTCACCTTCCATATTTCTTTTCTGCTGCAGCGCCTCATCCAGGACCTCCGGTGTGACTCCTTCCTaGCAGGAAGCCTTTTCCGTC +
Preference number: 4 (lower is better)
Translates to: SSSPSIFLFCCSASSRTSGVTPS*QEAFSV
Trigger: GACGGAAAAGGCTTCCTGTCAGGAAGGAGTCACACC...GGAGGTCCTGGATGAGGCGCTGCAGCAGAAAAGAAATATGGAAGGTGAGCTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp ATGGACGTCCACTGCGATCTTGCTATCCAGCTGTGCCTTGAGCTCTGTGCATTTGGTGTGACTCCTTCCTaGCAGGAAGCCTTTTCCGTC +
Preference number: 4 (lower is better)
Translates to: MDVHCDLAIQLCLELCAFGVTPS*QEAFSV
Trigger: GACGGAAAAGGCTTCCTGTCAGGAAGGAGTCACACC...AAATGCACAGAGCTCAAGGCACAGCTGGATAGCAAGATCGCAGTGGACGTCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR TCA 90 bp TTGAGCTCTGTGCATTTGGCCTGCAAGCTCTCCAGCTGCTCCGTGCTTTCCACGAAAGCAATTCAGGTGTaGCTCCTTCCTGACAGGAAG +
Preference number: 4 (lower is better)
Translates to: LSSVHLACKLSSCSVLSTKAIQV*LLPDRK
Trigger: CTTCCTGTCAGGAAGGAGTCACACCTGAATTGCTTT...CGTGGAAAGCACGGAGCAGCTGGAGAGCTTGCAGGCCAAATGCACAGAGCTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR TCA 90 bp GGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTATCCAGCTGTGCCTTaGGCTCTGTGCATTTGGCCT +
Preference number: 4 (lower is better)
Translates to: GWFISPLPMTLSGFHGPSYPAVP*ALCIWP
Trigger: AGGCCAAATGCACAGAGCTCAAGGCACAGCTGGATA...AGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp GGACCATTTCAAGCTCACCTTCCATATTTCTTTTCTGCTGCAGCGCCTCATCCATCCTGGTGGCCCAGCTaGTCTTCTCCAGAAGCAGGC +
Preference number: 4 (lower is better)
Translates to: GPFQAHLPYFFSAAAPHPSWWPS*SSPEAG
Trigger: GCCTGCTTCTGGAGAAGAGCAGCTGGGCCACCAGGA...TGGATGAGGCGCTGCAGCAGAAAAGAAATATGGAAGGTGAGCTTGAAATGGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp GGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTACCTCCTGCTTTTCCTaGAGCATCCGATGTAGGTGC +
Preference number: 4 (lower is better)
Translates to: GWFISPLPMTLSGFHGPSTSCFS*SIRCRC
Trigger: GCACCTACATCGGATGCTGCAGGAAAAGCAGGAGGT...AGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000150421.2
CDS-3UTR CCA 90 bp CTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGAAGCCATGGATGATGTaGTTGAACTGGCTCCGGCGG +
Preference number: 4 (lower is better)
Translates to: LVYFSLAYDTQWLPRAFLKPWMM*LNWLRR
Trigger: CCGCCGGAGCCAGTTCAACCACATCATCCATGGCTT...CAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp TGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTGATCTCTGGCGAGGCTaGGGAATGGCAACTGTCTGC +
Preference number: 4 (lower is better)
Translates to: WFISPLPMTLSGFHGPSCDLWRG*GMATVC
Trigger: GCAGACAGTTGCCATTCCCCAGCCTCGCCAGAGATC...ACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp CTGCTGTTCCTTCAGGCGGTGATGGATATCCCCCAGCTTCAGTGCTGCCTGCTTTCATCCACCAGGTCTTaGCTTTGCTTCCTTAGGCAA +
Preference number: 4 (lower is better)
Translates to: LLFLQAVMDIPQLQCCLLSSTRS*LCFLRQ
Trigger: TTGCCTAAGGAAGCAAAGCCAAGACCTGGTGGATGA...AAGCAGGCAGCACTGAAGCTGGGGGATATCCATCACCGCCTGAAGGAACAGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp GGACCATTTCAAGCTCACCTTCCATATTTCTTTTCTGCTGCAGCGCCTCATCCATCCTGGAGGTGCGCCTaGTGGGTGTCCCTGGCTTTT +
Preference number: 4 (lower is better)
Translates to: GPFQAHLPYFFSAAAPHPSWRCA*WVSLAF
Trigger: AAAAGCCAGGGACACCCACCAGGCGCACCTCCAGGA...TGGATGAGGCGCTGCAGCAGAAAAGAAATATGGAAGGTGAGCTTGAAATGGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp TGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTCTAGCGCTCTGTTCCTaGTGGCCCAGCTGCTCTTCT +
Preference number: 4 (lower is better)
Translates to: WFISPLPMTLSGFHGPSCLALCS*WPSCSS
Trigger: AGAAGAGCAGCTGGGCCACCAGGAACAGAGCGCTAG...ACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
3UTR CAA 72 bp GCCTGCTTCTTGTACCCCTTTACCCTCTCCTCCAGCTaGCCCAGGCGAATGTTGCCTTTCAGGATTTTGTTG +
Preference number: 4 (lower is better)
Translates to: ACFLYPFTLSSS*PRRMLPFRILL
Trigger: CAACAAAATCCTGAAAGGCAACATTCGCCTGGGCAAGCTGGAGGAGAGGGTAAAGGGGTACAAGAAGCAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp GGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTGAAAGCCAGTCTGGTTaGGGAGCATCATCCTTTCTC +
Preference number: 4 (lower is better)
Translates to: GWFISPLPMTLSGFHGPSESQSG*GASSFL
Trigger: GAGAAAGGATGATGCTCCTCAACCAGACTGGCTTTC...AGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp CGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTTAACATCTTTCTGCTaGGTGTGCTGTGGTGTTGAG +
Preference number: 4 (lower is better)
Translates to: RGWFISPLPMTLSGFHGPLTSFC*VCCGVE
Trigger: CTCAACACCACAGCACACTCAGCAGAAAGATGTTAA...AGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp TGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGTTAACATCTTTCTGCTaGGTGTGCTGTGGTGTTGAG +
Preference number: 4 (lower is better)
Translates to: CRGWFISPLPMTLSGFHGLTSFC*VCCGVE
Trigger: CTCAACACCACAGCACACTCAGCAGAAAGATGTTAA...CCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp CGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTAGCCAGCAACAGTGGTaGGAGATACTTTATATCCAC +
Preference number: 4 (lower is better)
Translates to: RGWFISPLPMTLSGFHGPSQQQW*EILYIH
Trigger: GTGGATATAAAGTATCTCTCACCACTGTTGCTGGCT...AGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp TCAAGCTCACCTTCCATATTTCTTTTCTGCTGCAGCGCCTCATCCAGGACCTCCTATCCAGCTGTGCCTTaGGCTCTGTGCATTTGGCCT +
Preference number: 4 (lower is better)
Translates to: SSSPSIFLFCCSASSRTSYPAVP*ALCIWP
Trigger: AGGCCAAATGCACAGAGCTCAAGGCACAGCTGGATA...GGAGGTCCTGGATGAGGCGCTGCAGCAGAAAAGAAATATGGAAGGTGAGCTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp TGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTCCCCAGCTTCAGTGCTaGCTGCTTCTTGTACCCCTT +
Preference number: 4 (lower is better)
Translates to: WFISPLPMTLSGFHGPSCPQLQC*LLLVPL
Trigger: AAGGGGTACAAGAAGCAGGCAGCACTGAAGCTGGGG...ACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079414.12
CDS-3UTR CCA 90 bp GTCCACTGCGATCTTGCTATCCAGCTGTGCCTTGAGCTCTGTGCATTTGGCCTGTCATCCACCAGGTCTTaGCTTTGCTTCCTTAGGCAA +
Preference number: 4 (lower is better)
Translates to: VHCDLAIQLCLELCAFGLSSTRS*LCFLRQ
Trigger: TTGCCTAAGGAAGCAAAGCCAAGACCTGGTGGATGA...CAGGCCAAATGCACAGAGCTCAAGGCACAGCTGGATAGCAAGATCGCAGTGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR CCA 90 bp ATGGACGTCCACTGCGATCTTGCTATCCAGCTGTGCCTTGAGCTCTGTGCATTTGGGAGGCCTTGGATATaGGAACTCTCTTCCTCAGAC +
Preference number: 4 (lower is better)
Translates to: MDVHCDLAIQLCLELCAFGRPWI*ELSSSD
Trigger: GTCTGAGGAAGAGAGTTCCCATATCCAAGGCCTCCC...AAATGCACAGAGCTCAAGGCACAGCTGGATAGCAAGATCGCAGTGGACGTCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR CCA 90 bp CCCAGGCGAATGTTGCCTTTCAGGATTTTGTTGAGGACCCCATGCTTCTCGCTCTTGGATGGGAGGCCTTaGATATGGGAACTCTCTTCC +
Preference number: 4 (lower is better)
Translates to: PRRMLPFRILLRTPCFSLLDGRP*IWELSS
Trigger: GGAAGAGAGTTCCCATATCCAAGGCCTCCCATCCAA...GAGCGAGAAGCATGGGGTCCTCAACAAAATCCTGAAAGGCAACATTCGCCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp CAGGACCATTTCAAGCTCACCTTCCATATTTCTTTTCTGCTGCAGCGCCTCATCGTGGTGTGGGGCCCTTaGATGGGAGGCCTTGGATAT +
Preference number: 4 (lower is better)
Translates to: QDHFKLTFHISFLLQRLIVVWGP*MGGLGY
Trigger: ATATCCAAGGCCTCCCATCCAAGGGCCCCACACCAC...GATGAGGCGCTGCAGCAGAAAAGAAATATGGAAGGTGAGCTTGAAATGGTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp CCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCCTCTTAGTTAACTCTTaGTGCAAGGCTTCGTTTTCC +
Preference number: 4 (lower is better)
Translates to: PGLVYFSLAYDTQWLPRALLVNS*CKASFS
Trigger: GGAAAACGAAGCCTTGCACCAAGAGTTAACTAAGAG...GGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp CAGGACCATTTCAAGCTCACCTTCCATATTTCTTTTCTGCTGCAGCGCCTCATCTGCTTTTCCTGGCCCTaGGTCTTTGCTTCCAGGAGC +
Preference number: 4 (lower is better)
Translates to: QDHFKLTFHISFLLQRLICFSWP*VFASRS
Trigger: GCTCCTGGAAGCAAAGACTCAGGGCCAGGAAAAGCA...GATGAGGCGCTGCAGCAGAAAAGAAATATGGAAGGTGAGCTTGAAATGGTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp CTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGGGTGTCCCTGGCTTTTaGTTGCTGAATCTCCAACTG +
Preference number: 4 (lower is better)
Translates to: LVYFSLAYDTQWLPRAFLGVPGF*LLNLQL
Trigger: CAGTTGGAGATTCAGCAAGCAAAAGCCAGGGACACC...CAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp AGTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGATGGCCTTTTCTACTTaGTTTCTGAGGACATCAATT +
Preference number: 4 (lower is better)
Translates to: SGFHGPSCHTGPPEERRKMAFST*FLRTSI
Trigger: AATTGATGTCCTCAGAAAGCAAGTAGAAAAGGCCAT...CTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS-3UTR GCA 90 bp GGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTAGCTTCAGTGCTGCCTaGTTCTTGTACCCCAAATAC +
Preference number: 4 (lower is better)
Translates to: GWFISPLPMTLSGFHGPSSFSAA*FLYPKY
Trigger: GTATTTGGGGTACAAGAAGCAGGCAGCACTGAAGCT...AGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150421.2
CDS-3UTR CCA 90 bp GGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTTCTCCTTGGCAGTaGACTCCAGGACCATTTCAA +
Preference number: 4 (lower is better)
Translates to: GWFISPLPMTLSGFHGPSCSPWQ*TPGPFQ
Trigger: TTGAAATGGTCCTGGAGTCCACTGCCAAGGAGAACA...AGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000150421.2
3UTR CAA 72 bp TCCAGCTTGCCCAGGCGAATGTTGCCTTTCAGGATTTaGTTGAGGACCCCATGCTTCTCGCTCTCTAAACAC +
Preference number: 4 (lower is better)
Translates to: SSLPRRMLPFRI*LRTPCFSLSKH
Trigger: GTGTTTAGAGAGCGAGAAGCATGGGGTCCTCAACAAAATCCTGAAAGGCAACATTCGCCTGGGCAAGCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp GGACCATTTCAAGCTCACCTTCCATATTTCTTTTCTGCTGCAGCGCCTCATCCAAGTACCTGGTCCCTGTaGGGCACAGTGTATGTAGCA +
Preference number: 4 (lower is better)
Translates to: GPFQAHLPYFFSAAAPHPSTWSL*GTVYVA
Trigger: TGCTACATACACTGTGCCTCACAGGGACCAGGTACT...TGGATGAGGCGCTGCAGCAGAAAAGAAATATGGAAGGTGAGCTTGAAATGGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp CTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGAAAGCAATTCAGGTGTaGCTCCTTCCTGACAGGAAG +
Preference number: 4 (lower is better)
Translates to: LVYFSLAYDTQWLPRAFLKAIQV*LLPDRK
Trigger: CTTCCTGTCAGGAAGGAGTCACACCTGAATTGCTTT...CAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp GAACGCACATGGCTTGACACAGAGAGCAGCTGTCTTCTCCGACCACACAATCTGAGCCAGCAACAGTGGTaGGAGATACTTTATATCCAC +
Preference number: 4 (lower is better)
Translates to: ERTWLDTESSCLLRPHNLSQQQW*EILYIH
Trigger: GTGGATATAAAGTATCTCTCACCACTGTTGCTGGCT...CAGATTGTGTGGTCGGAGAAGACAGCTGCTCTCTGTGTCAAGCCATGTGCGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp CACTGCGATCTTGCTATCCAGCTGTGCCTTGAGCTCTGTGCATTTGGCCTGCAAAGCCAGCAACAGTGGTaGGAGATACTTTATATCCAC +
Preference number: 4 (lower is better)
Translates to: HCDLAIQLCLELCAFGLQSQQQW*EILYIH
Trigger: GTGGATATAAAGTATCTCTCACCACTGTTGCTGGCT...TTGCAGGCCAAATGCACAGAGCTCAAGGCACAGCTGGATAGCAAGATCGCAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR TCA 90 bp TCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGACACGGCTTTTTAGTTCATTaGCAATTGATGTATGGACGT +
Preference number: 4 (lower is better)
Translates to: STGLLVTLALLRRGGSRHGFLVH*QLMYGR
Trigger: ACGTCCATACATCAATTGTCAATGAACTAAAAAGCC...GTGTCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp TGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTCTTTCAGGATTTTGTTaGGGACCCCATGCTTCTCGC +
Preference number: 4 (lower is better)
Translates to: WFISPLPMTLSGFHGPSCLSGFC*GPHASR
Trigger: GCGAGAAGCATGGGGTCCTCAACAAAATCCTGAAAG...ACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079414.12
CDS-3UTR TCA 90 bp TCATTGACAATTGATGTATGGACGTCCACTGCGATCTTGCTATCCAGCTGTGCCACTCCAGGGCGGTGCTaGGTTTGTCCTTCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: SLTIDVWTSTAILLSSCATPGRC*VCPSLS
Trigger: TGAAAGAGAAGGACAAACTCAGCACCGCCCTGGAGT...GGCACAGCTGGATAGCAAGATCGCAGTGGACGTCCATACATCAATTGTCAATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR GCA 90 bp CTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGCTTGCTATCCAGCTGTaGCTTGAGCTCTGTGCATTT +
Preference number: 4 (lower is better)
Translates to: LVYFSLAYDTQWLPRAFLLAIQL*LELCAF
Trigger: AAATGCACAGAGCTCAAGGCACAGCTGGATAGCAAG...CAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp GTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTTTCTCTTCTTCCTTTTaGAACTGGCTTTTTAGTTCA +
Preference number: 4 (lower is better)
Translates to: VASTGLLVTLALLRRGGSFSSSF*NWLFSS
Trigger: TGAACTAAAAAGCCAGTTGCAAAAGGAAGAAGAGAA...ACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp GCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGAATGGCCTTTTCTACTTaGTTTCTGAGGACATCAATT +
Preference number: 4 (lower is better)
Translates to: ASTGLLVTLALLRRGGSRMAFST*FLRTSI
Trigger: AATTGATGTCCTCAGAAAGCAAGTAGAAAAGGCCAT...TCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS-3UTR GCA 90 bp CTTCTTCTCTCCAGGGTGGCCTGGAGAAGGCTCCGCATCCTCCTGTTCTCCTTGATGGCCTTTTCTACTTaGTTTCTGAGGACATCAATT +
Preference number: 4 (lower is better)
Translates to: LLLSRVAWRRLRILLFSLMAFST*FLRTSI
Trigger: AATTGATGTCCTCAGAAAGCAAGTAGAAAAGGCCAT...CAAGGAGAACAGGAGGATGCGGAGCCTTCTCCAGGCCACCCTGGAGAGAAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp ATGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGTTGACAATTGATGTATaGACGTCCACTGCGATCTTG +
Preference number: 4 (lower is better)
Translates to: MPGLVYFSLAYDTQWLPRLTIDV*TSTAIL
Trigger: CAAGATCGCAGTGGACGTCCATACATCAATTGTCAA...CCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp AGTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTCTTCCTTTTGCAACTaGCTTTTTAGTTCATTGACA +
Preference number: 4 (lower is better)
Translates to: SGFHGPSCHTGPPEERRKSSFCN*LFSSLT
Trigger: TGTCAATGAACTAAAAAGCCAGTTGCAAAAGGAAGA...CTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp TGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTTCATCCACCAGGTCTTaGCTTTGCTTCCTTAGGCAA +
Preference number: 4 (lower is better)
Translates to: WFISPLPMTLSGFHGPSCSSTRS*LCFLRQ
Trigger: TTGCCTAAGGAAGCAAAGCCAAGACCTGGTGGATGA...ACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp CCCAGGCGAATGTTGCCTTTCAGGATTTTGTTGAGGACCCCATGCTTCTCGCTCTTGACAATTGATGTATaGACGTCCACTGCGATCTTG +
Preference number: 4 (lower is better)
Translates to: PRRMLPFRILLRTPCFSLLTIDV*TSTAIL
Trigger: CAAGATCGCAGTGGACGTCCATACATCAATTGTCAA...GAGCGAGAAGCATGGGGTCCTCAACAAAATCCTGAAAGGCAACATTCGCCTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR TCA 90 bp TCCAGGACCTCCTGCTTTTCCTGCAGCATCCGATGTAGGTGCTTCACCTCCTTCGGCTTTTTAGTTCATTaGCAATTGATGTATGGACGT +
Preference number: 4 (lower is better)
Translates to: SRTSCFSCSIRCRCFTSFGFLVH*QLMYGR
Trigger: ACGTCCATACATCAATTGTCAATGAACTAAAAAGCC...GAAGGAGGTGAAGCACCTACATCGGATGCTGCAGGAAAAGCAGGAGGTCCTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp CGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTTTGCAGAGTACAGATaGACAGTTTCTTCTTTTAAC +
Preference number: 4 (lower is better)
Translates to: RGWFISPLPMTLSGFHGPFAEYR*TVSSFN
Trigger: GTTAAAAGAAGAAACTGTGCATCTGTACTCTGCAAA...AGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp TCAAGCTCACCTTCCATATTTCTTTTCTGCTGCAGCGCCTCATCCAGGACCTCCCTCTTAGTTAACTCTTaGTGCAAGGCTTCGTTTTCC +
Preference number: 4 (lower is better)
Translates to: SSSPSIFLFCCSASSRTSLLVNS*CKASFS
Trigger: GGAAAACGAAGCCTTGCACCAAGAGTTAACTAAGAG...GGAGGTCCTGGATGAGGCGCTGCAGCAGAAAAGAAATATGGAAGGTGAGCTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
3UTR CAA 72 bp TCATTGACAATTGATGTATGGACGTCCACTGCGATCTaGCTATCCAGCTGTGCCTTGAGCTCTGTGCATTTG +
Preference number: 4 (lower is better)
Translates to: SLTIDVWTSTAI*LSSCALSSVHL
Trigger: CAAATGCACAGAGCTCAAGGCACAGCTGGATAGCAAGATCGCAGTGGACGTCCATACATCAATTGTCAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR GCA 90 bp TGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTTTTGCAGAGTACAGATaGACAGTTTCTTCTTTTAAC +
Preference number: 4 (lower is better)
Translates to: WFISPLPMTLSGFHGPSCFAEYR*TVSSFN
Trigger: GTTAAAAGAAGAAACTGTGCATCTGTACTCTGCAAA...ACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR GCA 90 bp TGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTTTCTCTTCTTCCTTTTaGAACTGGCTTTTTAGTTCA +
Preference number: 4 (lower is better)
Translates to: WFISPLPMTLSGFHGPSCFSSSF*NWLFSS
Trigger: TGAACTAAAAAGCCAGTTGCAAAAGGAAGAAGAGAA...ACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CCA 90 bp TGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTTCTTCCTTTTGCAACTaGCTTTTTAGTTCATTGACA +
Preference number: 4 (lower is better)
Translates to: WFISPLPMTLSGFHGPSCSSFCN*LFSSLT
Trigger: TGTCAATGAACTAAAAAGCCAGTTGCAAAAGGAAGA...ACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS GCA 90 bp AGGAGGGGGTGTGCGTGGCACCGCTGGCTTCGGAGCGATGCTGGCTaGGGGGAGGAAGCCATGGATGATGTGGTTGAACTGGCTCCGGCG +
Preference number: 5 (lower is better)
Translates to: RRGCAWHRWLRSDAG*GEEAMDDVVELAPA
Trigger: CGCCGGAGCCAGTTCAACCACATCATCCATGGCTTCCTCCCCGCAGCCAGCATCGCTCCGAAGCCAGCGGTGCCACGCACACCCCCTCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS GCA 90 bp AGGAGGGGGTGTGCGTGGCACCGCTGGCTTCGGAGCGATGCTGGCTaGGGGGAGGAAGCCATGGATGATGTGGTTTGGCTCCGGCGGTTC +
Preference number: 5 (lower is better)
Translates to: RRGCAWHRWLRSDAG*GEEAMDDVVWLRRF
Trigger: GAACCGCCGGAGCCAAACCACATCATCCATGGCTTCCTCCCCGCAGCCAGCATCGCTCCGAAGCCAGCGGTGCCACGCACACCCCCTCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000206854.2
CDS CCA 90 bp TGGCCTTGCGCGTGCGCTCCAGCTCGGCCTCTAGCGCTCTGTTCCTaGTGGCCCAGCTGCTCTTCTCCAGAAGCAGGCTCTTCTTCTGCA +
Preference number: 5 (lower is better)
Translates to: WPCACAPARPLALCS*WPSCSSPEAGSSSA
Trigger: TGCAGAAGAAGAGCCTGCTTCTGGAGAAGAGCAGCTGGGCCACCAGGAACAGAGCGCTAGAGGCCGAGCTGGAGCGCACGCGCAAGGCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS CCA 90 bp GCTGGGGAATGGCAACTGTCTGCCCAGTCAACGTGGTTGCCAGGATaGCTGCAGCCAGAGCAGACCTGGGCCTCTCTGGAGAAGGGTTGG +
Preference number: 5 (lower is better)
Translates to: AGEWQLSAQSTWLPG*LQPEQTWASLEKGW
Trigger: CCAACCCTTCTCCAGAGAGGCCCAGGTCTGCTCTGGCTGCAGCCATCCTGGCAACCACGTTGACTGGGCAGACAGTTGCCATTCCCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp AGTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGGCCCAGTCAACGTGGTaGCCAGGATGGCTGCAGCCA +
Preference number: 5 (lower is better)
Translates to: SGFHGPSCHTGPPEERRKAQSTW*PGWLQP
Trigger: TGGCTGCAGCCATCCTGGCAACCACGTTGACTGGGC...CTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp CCTGGAGAAGGCTCCGCATCCTCCTGTTCTCCTTGGCAGTGGACTCCAGGACCAGGTGGTGTGGGGCCCTaGGATGGGAGGCCTTGGATA +
Preference number: 5 (lower is better)
Translates to: PGEGSASSCSPWQWTPGPGGVGP*DGRPWI
Trigger: TATCCAAGGCCTCCCATCCAAGGGCCCCACACCACC...TGGTCCTGGAGTCCACTGCCAAGGAGAACAGGAGGATGCGGAGCCTTCTCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS GCA 90 bp CTCTCAGACCGAGATCTCTGGCGAGGCTGGGGAATGGCAACTGTCTaGCCAGTCAACGTGGTTGCCAGGATGGCTGCAGCCAGAGCAGAC +
Preference number: 5 (lower is better)
Translates to: LSDRDLWRGWGMATV*PVNVVARMAAARAD
Trigger: GTCTGCTCTGGCTGCAGCCATCCTGGCAACCACGTTGACTGGGCAGACAGTTGCCATTCCCCAGCCTCGCCAGAGATCTCGGTCTGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS CCA 90 bp CGGAGGCATCACTCTCAGACCGAGATCTCTGGCGAGGCTGGGGAATaGCAACTGTCTGCCCAGTCAACGTGGTTGCCAGGATGGCTGCAG +
Preference number: 5 (lower is better)
Translates to: RRHHSQTEISGEAGE*QLSAQSTWLPGWLQ
Trigger: CTGCAGCCATCCTGGCAACCACGTTGACTGGGCAGACAGTTGCCATTCCCCAGCCTCGCCAGAGATCTCGGTCTGAGAGTGATGCCTCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp CCTGGAGAAGGCTCCGCATCCTCCTGTTCTCCTTGGCAGTGGACTCCAGGACCACTCATTCTGCCAGCTTaGCCGCAGCCTCAGCTCGGA +
Preference number: 5 (lower is better)
Translates to: PGEGSASSCSPWQWTPGPLILPA*PQPQLG
Trigger: TCCGAGCTGAGGCTGCGGCAAAGCTGGCAGAATGAG...TGGTCCTGGAGTCCACTGCCAAGGAGAACAGGAGGATGCGGAGCCTTCTCCAGG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp CGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTGCCCAGTCAACGTGGTaGCCAGGATGGCTGCAGCCA +
Preference number: 5 (lower is better)
Translates to: RGWFISPLPMTLSGFHGPAQSTW*PGWLQP
Trigger: TGGCTGCAGCCATCCTGGCAACCACGTTGACTGGGC...AGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp GCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGACTCATTCTGCCAGCTTaGCCGCAGCCTCAGCTCGGA +
Preference number: 5 (lower is better)
Translates to: ASTGLLVTLALLRRGGSRLILPA*PQPQLG
Trigger: TCCGAGCTGAGGCTGCGGCAAAGCTGGCAGAATGAG...TCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp TCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGACACCCAAGCCCACCAGGTTaGCCAGGTACTGGTGAGCAG +
Preference number: 5 (lower is better)
Translates to: STGLLVTLALLRRGGSRHPSPPG*PGTGEQ
Trigger: CTGCTCACCAGTACCTGGCAAACCTGGTGGGCTTGG...GTGTCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS-3UTR CAA 90 bp CTGCTTTGCCGGCAAAGTCCTCCTGCTGTTCCTTCAGGCGGTGATGGATATCCCCCAAGCCCACCAGGTTaGCCAGGTACTGGTGAGCAG +
Preference number: 5 (lower is better)
Translates to: LLCRQSPPAVPSGGDGYPPSPPG*PGTGEQ
Trigger: CTGCTCACCAGTACCTGGCAAACCTGGTGGGCTTGG...GGGATATCCATCACCGCCTGAAGGAACAGCAGGAGGACTTTGCCGGCAAAGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp CCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCATCCTCCTGTTCTCCTaGGCAGTGGACTCCAGGACC +
Preference number: 5 (lower is better)
Translates to: PGLVYFSLAYDTQWLPRAILLFS*AVDSRT
Trigger: GGTCCTGGAGTCCACTGCCAAGGAGAACAGGAGGAT...GGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000150421.2
CDS CCA 90 bp TCAATGTCGGAGGCATCACTCTCAGACCGAGATCTCTGGCGAGGCTaGGGAATGGCAACTGTCTGCCCAGTCAACGTGGTTGCCAGGATG +
Preference number: 5 (lower is better)
Translates to: SMSEASLSDRDLWRG*GMATVCPVNVVARM
Trigger: CATCCTGGCAACCACGTTGACTGGGCAGACAGTTGCCATTCCCCAGCCTCGCCAGAGATCTCGGTCTGAGAGTGATGCCTCCGACATTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp GTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTCTTGGATGGGAGGCCTaGGATATGGGAACTCTCTTC +
Preference number: 5 (lower is better)
Translates to: VASTGLLVTLALLRRGGSLGWEA*DMGTLF
Trigger: GAAGAGAGTTCCCATATCCAAGGCCTCCCATCCAAG...ACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp GGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTGGTGGTGTGGGGCCCTaGGATGGGAGGCCTTGGATA +
Preference number: 5 (lower is better)
Translates to: GWFISPLPMTLSGFHGPSGGVGP*DGRPWI
Trigger: TATCCAAGGCCTCCCATCCAAGGGCCCCACACCACC...AGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp TCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGACACCTATCCAGCTGTGCCTaGAGCTCTGTGCATTTGGCC +
Preference number: 5 (lower is better)
Translates to: STGLLVTLALLRRGGSRHLSSCA*SSVHLA
Trigger: GGCCAAATGCACAGAGCTCAAGGCACAGCTGGATAG...GTGTCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp GCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGAACTCCCTGCAGCTGGTaGACACCTGTGTTTCAGCAT +
Preference number: 5 (lower is better)
Translates to: ASTGLLVTLALLRRGGSRTPCSW*TPVFQH
Trigger: ATGCTGAAACACAGGTGTCAACCAGCTGCAGGGAGT...TCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp TGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTGGCCCTGAGTCTTaGCTTCCAGGAGCACAAGTT +
Preference number: 5 (lower is better)
Translates to: CRGWFISPLPMTLSGFHGPGPES*LPGAQV
Trigger: AACTTGTGCTCCTGGAAGCAAAGACTCAGGGCCAGG...CCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp TCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGACACAGACTGTCTCGTTCCTaGGTGACAGTCTCTGCCAAG +
Preference number: 5 (lower is better)
Translates to: STGLLVTLALLRRGGSRHRLSRS*VTVSAK
Trigger: CTTGGCAGAGACTGTCACCAAGGAACGAGACAGTCT...GTGTCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS GCA 90 bp ACTGTCTCGTTCCTTGGTGACAGTCTCTGCCAAGCCCACCAGGTTTaGCAGGTACTGGTGAGCAGACATCTCCTTCCCCATGGCCTTTTC +
Preference number: 5 (lower is better)
Translates to: TVSFLGDSLCQAHQV*QVLVSRHLLPHGLF
Trigger: GAAAAGGCCATGGGGAAGGAGATGTCTGCTCACCAGTACCTGGCAAACCTGGTGGGCTTGGCAGAGACTGTCACCAAGGAACGAGACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS CCA 90 bp CTGTCCTTTTCAATGTCGGAGGCATCACTCTCAGACCGAGATCTCTaGCGAGGCTGGGGAATGGCAACTGTCTGCCCAGTCAACGTGGTT +
Preference number: 5 (lower is better)
Translates to: LSFSMSEASLSDRDL*RGWGMATVCPVNVV
Trigger: AACCACGTTGACTGGGCAGACAGTTGCCATTCCCCAGCCTCGCCAGAGATCTCGGTCTGAGAGTGATGCCTCCGACATTGAAAAGGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp TGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGGGGTGTCCCTGGCTTTaGCTTGCTGAATCTCCAACT +
Preference number: 5 (lower is better)
Translates to: CRGWFISPLPMTLSGFHGGCPWL*LAESPT
Trigger: AGTTGGAGATTCAGCAAGCAAAAGCCAGGGACACCC...CCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp CTGCTGTTCCTTCAGGCGGTGATGGATATCCCCCAGCTTCAGTGCTGCCTGCTTGGGTGTCCCTGGCTTTaGCTTGCTGAATCTCCAACT +
Preference number: 5 (lower is better)
Translates to: LLFLQAVMDIPQLQCCLLGCPWL*LAESPT
Trigger: AGTTGGAGATTCAGCAAGCAAAAGCCAGGGACACCC...AAGCAGGCAGCACTGAAGCTGGGGGATATCCATCACCGCCTGAAGGAACAGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp TGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGAGACTGTCTCGTTCCTaGGTGACAGTCTCTGCCAAG +
Preference number: 5 (lower is better)
Translates to: CRGWFISPLPMTLSGFHGRLSRS*VTVSAK
Trigger: CTTGGCAGAGACTGTCACCAAGGAACGAGACAGTCT...CCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp CTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGACCCTCTCCTCCAGCTaGCCCAGGCGAATGTTGCCT +
Preference number: 5 (lower is better)
Translates to: LVYFSLAYDTQWLPRAFLTLSSS*PRRMLP
Trigger: AGGCAACATTCGCCTGGGCAAGCTGGAGGAGAGGGT...CAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079414.12
CDS TCA 90 bp ACGTCCTGGAGGTGCGCCTGGTGGGTGTCCCTGGCTTTTGCTTGCTaGATCTCCAACTGCTCTATCAGCAGCTTGTTCTCATCTAGAACC +
Preference number: 5 (lower is better)
Translates to: TSWRCAWWVSLAFAC*ISNCSISSLFSSRT
Trigger: GGTTCTAGATGAGAACAAGCTGCTGATAGAGCAGTTGGAGATTCAGCAAGCAAAAGCCAGGGACACCCACCAGGCGCACCTCCAGGACGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS CCA 90 bp CCCATGGCCTTTTCTACTTGCTTTCTGAGGACATCAATTCTCTTTTaGTATCGCCTGTTGGCCTTGCGCGTGCGCTCCAGCTCGGCCTCT +
Preference number: 5 (lower is better)
Translates to: PMAFSTCFLRTSILF*YRLLALRVRSSSAS
Trigger: AGAGGCCGAGCTGGAGCGCACGCGCAAGGCCAACAGGCGATACCAAAAGAGAATTGATGTCCTCAGAAAGCAAGTAGAAAAGGCCATGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS-3UTR CAA 90 bp CTGCTTTGCCGGCAAAGTCCTCCTGCTGTTCCTTCAGGCGGTGATGGATATCCCTTCACAGCTGAGGGCTaGGTTTGCAGAGTACAGATG +
Preference number: 5 (lower is better)
Translates to: LLCRQSPPAVPSGGDGYPFTAEG*VCRVQM
Trigger: CATCTGTACTCTGCAAACCAAGCCCTCAGCTGTGAA...GGGATATCCATCACCGCCTGAAGGAACAGCAGGAGGACTTTGCCGGCAAAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp GCTTTCCACGAGCTGCTTTTCCTGGCCCTGAGTCTTTGCTTCCAGGAGCACAAGCTTGGATGGGAGGCCTaGGATATGGGAACTCTCTTC +
Preference number: 5 (lower is better)
Translates to: AFHELLFLALSLCFQEHKLGWEA*DMGTLF
Trigger: GAAGAGAGTTCCCATATCCAAGGCCTCCCATCCAAG...CTTGTGCTCCTGGAAGCAAAGACTCAGGGCCAGGAAAAGCAGCTCGTGGAAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR CAA 90 bp CTGCTCCGTGCTTTCCACGAGCTGCTTTTCCTGGCCCTGAGTCTTTGCTTCCAGAGGGCGGTGCTGAGTTaGTCCTTCTCTTTCATTCTG +
Preference number: 5 (lower is better)
Translates to: LLRAFHELLFLALSLCFQRAVLS*SFSFIL
Trigger: CAGAATGAAAGAGAAGGACAAACTCAGCACCGCCCT...CTGGAAGCAAAGACTCAGGGCCAGGAAAAGCAGCTCGTGGAAAGCACGGAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR CAA 90 bp TCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGACACTGCTCTATCAGCAGCTaGTTCTCATCTAGAACCAGC +
Preference number: 5 (lower is better)
Translates to: STGLLVTLALLRRGGSRHCSISS*FSSRTS
Trigger: GCTGGTTCTAGATGAGAACAAGCTGCTGATAGAGCA...GTGTCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp GTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTGACATCAATTCTCTTTaGGTATCGCCTGTTGGCCTT +
Preference number: 5 (lower is better)
Translates to: VASTGLLVTLALLRRGGSDINSL*VSPVGL
Trigger: AAGGCCAACAGGCGATACCAAAAGAGAATTGATGTC...ACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS GCA 90 bp CTTAGAAACGTCCTGGAGGTGCGCCTGGTGGGTGTCCCTGGCTTTTaGTTGCTGAATCTCCAACTGCTCTATCAGCAGCTTGTTCTCATC +
Preference number: 5 (lower is better)
Translates to: LRNVLEVRLVGVPGF*LLNLQLLYQQLVLI
Trigger: GATGAGAACAAGCTGCTGATAGAGCAGTTGGAGATTCAGCAAGCAAAAGCCAGGGACACCCACCAGGCGCACCTCCAGGACGTTTCTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS CCA 90 bp GAGATACTTTATATCCACCAACCAGGGTGGTGTGGGGCCCTTGGATaGGAGGCCTTGGATATGGGAACTCTCTTCCTCAGACAAAGGCCT +
Preference number: 5 (lower is better)
Translates to: EILYIHQPGWCGALG*EALDMGTLFLRQRP
Trigger: AGGCCTTTGTCTGAGGAAGAGAGTTCCCATATCCAAGGCCTCCCATCCAAGGGCCCCACACCACCCTGGTTGGTGGATATAAAGTATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000206230.2
CDS-3UTR CAA 90 bp TCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGACACTCCTTCAGCTTCCTGTaGTCTTTTTCCACCAACTTG +
Preference number: 5 (lower is better)
Translates to: STGLLVTLALLRRGGSRHSFSFL*SFSTNL
Trigger: CAAGTTGGTGGAAAAAGACAACAGGAAGCTGAAGGA...GTGTCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp GCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGAAGGCCTGAATTTTGTTaGGTAGCGACTGAGTTCTAC +
Preference number: 5 (lower is better)
Translates to: ASTGLLVTLALLRRGGSRRPEFC*VATEFY
Trigger: GTAGAACTCAGTCGCTACCAAACAAAATTCAGGCCT...TCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp CGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTGCTCTATCAGCAGCTaGTTCTCATCTAGAACCAGC +
Preference number: 5 (lower is better)
Translates to: RGWFISPLPMTLSGFHGPCSISS*FSSRTS
Trigger: GCTGGTTCTAGATGAGAACAAGCTGCTGATAGAGCA...AGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp GTGGCTTCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTTTCCAGGAGCACAAGTaGTTTAGTCAGCTTAGAAAC +
Preference number: 5 (lower is better)
Translates to: VASTGLLVTLALLRRGGSFQEHK*FSQLRN
Trigger: GTTTCTAAGCTGACTAAACAACTTGTGCTCCTGGAA...ACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGAAGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp CCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCGACATCAATTCTCTTTaGGTATCGCCTGTTGGCCTT +
Preference number: 5 (lower is better)
Translates to: PGLVYFSLAYDTQWLPRADINSL*VSPVGL
Trigger: AAGGCCAACAGGCGATACCAAAAGAGAATTGATGTC...GGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS-3UTR CAA 90 bp CCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCAGTGCTGCCTGCTTCTaGTACCCCAAATACTTAAGA +
Preference number: 5 (lower is better)
Translates to: PGLVYFSLAYDTQWLPRASAACF*YPKYLR
Trigger: TCTTAAGTATTTGGGGTACAAGAAGCAGGCAGCACT...GGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150421.2
CDS TCA 90 bp CCACCAGGTCTTGGCTTTGCTTCCTTAGGCAAAGCAATTCAGGTGTaGCTCCTTCCTGACAGGAAGCCTTTTCCGTCTCCTTCAGCTTCC +
Preference number: 5 (lower is better)
Translates to: PPGLGFASLGKAIQV*LLPDRKPFPSPSAS
Trigger: GGAAGCTGAAGGAGACGGAAAAGGCTTCCTGTCAGGAAGGAGTCACACCTGAATTGCTTTGCCTAAGGAAGCAAAGCCAAGACCTGGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000206230.2
CDS TCA 90 bp CTCTCCAGCTGCTCCGTGCTTTCCACGAGCTGCTTTTCCTGGCCCTaGGTCTTTGCTTCCAGGAGCACAAGTTGTTTAGTCAGCTTAGAA +
Preference number: 5 (lower is better)
Translates to: LSSCSVLSTSCFSWP*VFASRSTSCLVSLE
Trigger: TTCTAAGCTGACTAAACAACTTGTGCTCCTGGAAGCAAAGACTCAGGGCCAGGAAAAGCAGCTCGTGGAAAGCACGGAGCAGCTGGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS GCA 90 bp CTGCTCCGTGCTTTCCACGAGCTGCTTTTCCTGGCCCTGAGTCTTTaGTTCCAGGAGCACAAGTTGTTTAGTCAGCTTAGAAACGTCCTG +
Preference number: 5 (lower is better)
Translates to: LLRAFHELLFLALSL*FQEHKLFSQLRNVL
Trigger: CAGGACGTTTCTAAGCTGACTAAACAACTTGTGCTCCTGGAAGCAAAGACTCAGGGCCAGGAAAAGCAGCTCGTGGAAAGCACGGAGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS GCA 90 bp CTGAGCCAAATACTTAAGACTGTCTCGTTCCTTGGTGACAGTCTCTaGCAAGCCCACCAGGTTTGCCAGGTACTGGTGAGCAGACATCTC +
Preference number: 5 (lower is better)
Translates to: LSQILKTVSFLGDSL*QAHQVCQVLVSRHL
Trigger: GAGATGTCTGCTCACCAGTACCTGGCAAACCTGGTGGGCTTGGCAGAGACTGTCACCAAGGAACGAGACAGTCTTAAGTATTTGGCTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079414.12
CDS GCA 90 bp GTACCCCAAATACTTAAGACTGTCTCGTTCCTTGGTGACAGTCTCTaGCAAGCCCACCAGGTTTGCCAGGTACTGGTGAGCAGACATCTC +
Preference number: 5 (lower is better)
Translates to: VPQILKTVSFLGDSL*QAHQVCQVLVSRHL
Trigger: GAGATGTCTGCTCACCAGTACCTGGCAAACCTGGTGGGCTTGGCAGAGACTGTCACCAAGGAACGAGACAGTCTTAAGTATTTGGGGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150421.2
CDS GCA 90 bp CTCCTGCTGTTCCTTCAGGCGGTGATGGATATCCCCCAGCTTCAGTaGTGCCTGCTTCTTGTACCCCAAATACTTAAGACTGTCTCGTTC +
Preference number: 5 (lower is better)
Translates to: LLLFLQAVMDIPQLQ*CLLLVPQILKTVSF
Trigger: GAACGAGACAGTCTTAAGTATTTGGGGTACAAGAAGCAGGCAGCACTGAAGCTGGGGGATATCCATCACCGCCTGAAGGAACAGCAGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150421.2
CDS CCA 90 bp GTGAGAGATACTTTATATCCACCAACCAGGGTGGTGTGGGGCCCTTaGATGGGAGGCCTTGGATATGGGAACTCTCTTCCTCAGACAAAG +
Preference number: 5 (lower is better)
Translates to: VRDTLYPPTRVVWGP*MGGLGYGNSLPQTK
Trigger: CTTTGTCTGAGGAAGAGAGTTCCCATATCCAAGGCCTCCCATCCAAGGGCCCCACACCACCCTGGTTGGTGGATATAAAGTATCTCTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000206230.2
CDS-3UTR CAA 90 bp CCAGCTGCTCCGTGCTTTCCACGAGCTGCTTTTCCTGGCCCTGAGTCTTTGCTTTCCTTCAGCTTCCTGTaGTCTTTTTCCACCAACTTG +
Preference number: 5 (lower is better)
Translates to: PAAPCFPRAAFPGPESLLSFSFL*SFSTNL
Trigger: CAAGTTGGTGGAAAAAGACAACAGGAAGCTGAAGGA...AAGCAAAGACTCAGGGCCAGGAAAAGCAGCTCGTGGAAAGCACGGAGCAGCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR CAA 90 bp CTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGGTCCCTGGCTTTTGCTaGCTGAATCTCCAACTGCTC +
Preference number: 5 (lower is better)
Translates to: LVYFSLAYDTQWLPRAFLVPGFC*LNLQLL
Trigger: GAGCAGTTGGAGATTCAGCAAGCAAAAGCCAGGGAC...CAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp GCTTCTTCTCTCCAGGGTGGCCTGGAGAAGGCTCCGCATCCTCCTGTTCTCCTTTTCCAGGAGCACAAGTaGTTTAGTCAGCTTAGAAAC +
Preference number: 5 (lower is better)
Translates to: ASSLQGGLEKAPHPPVLLFQEHK*FSQLRN
Trigger: GTTTCTAAGCTGACTAAACAACTTGTGCTCCTGGAA...AAGGAGAACAGGAGGATGCGGAGCCTTCTCCAGGCCACCCTGGAGAGAAGAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp CTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGAGACTGTCTCGTTCCTaGGTGACAGTCTCTGCCAAG +
Preference number: 5 (lower is better)
Translates to: LVYFSLAYDTQWLPRAFLRLSRS*VTVSAK
Trigger: CTTGGCAGAGACTGTCACCAAGGAACGAGACAGTCT...CAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS-3UTR CAA 90 bp ATGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGTTGCCTTTCAGGATTTaGTTGAGGACCCCATGCTTC +
Preference number: 5 (lower is better)
Translates to: MPGLVYFSLAYDTQWLPRLPFRI*LRTPCF
Trigger: GAAGCATGGGGTCCTCAACAAAATCCTGAAAGGCAA...CCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079414.12
CDS-3UTR CAA 90 bp TGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTAGTGCTGCCTGCTTCTaGTACCCCTTTACCCTCTCC +
Preference number: 5 (lower is better)
Translates to: WFISPLPMTLSGFHGPSCSAACF*YPFTLS
Trigger: GGAGAGGGTAAAGGGGTACAAGAAGCAGGCAGCACT...ACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079414.12
CDS GCA 90 bp CAGCATCAAATACTTAAGACTGTCTCGTTCCTTGGTGACAGTCTCTaGCAAGCCCACCAGGTTTGCCAGGTACTGGTGAGCAGACATCTC +
Preference number: 5 (lower is better)
Translates to: QHQILKTVSFLGDSL*QAHQVCQVLVSRHL
Trigger: GAGATGTCTGCTCACCAGTACCTGGCAAACCTGGTGGGCTTGGCAGAGACTGTCACCAAGGAACGAGACAGTCTTAAGTATTTGATGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS GCA 90 bp CTGCTGTTCCTTCAGGCGGTGATGGATATCCCCCAGCTTCAGTGCTaGCTGCTTCTTGTACCCCAAATACTTAAGACTGTCTCGTTCCTT +
Preference number: 5 (lower is better)
Translates to: LLFLQAVMDIPQLQC*LLLVPQILKTVSFL
Trigger: AAGGAACGAGACAGTCTTAAGTATTTGGGGTACAAGAAGCAGGCAGCACTGAAGCTGGGGGATATCCATCACCGCCTGAAGGAACAGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150421.2
CDS-3UTR CAA 90 bp CTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTTCACAGCTGAGGGCTaGGTTTGCAGAGTACAGATG +
Preference number: 5 (lower is better)
Translates to: LVYFSLAYDTQWLPRAFLFTAEG*VCRVQM
Trigger: CATCTGTACTCTGCAAACCAAGCCCTCAGCTGTGAA...CAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp CATCCAGGACCTCCTGCTTTTCCTGCAGCATCCGATGTAGGTGCTTCACCTCCTAGGCCTGAATTTTGTTaGGTAGCGACTGAGTTCTAC +
Preference number: 5 (lower is better)
Translates to: HPGPPAFPAASDVGASPPRPEFC*VATEFY
Trigger: GTAGAACTCAGTCGCTACCAAACAAAATTCAGGCCT...AGGAGGTGAAGCACCTACATCGGATGCTGCAGGAAAAGCAGGAGGTCCTGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp CTTGCTATCCAGCTGTGCCTTGAGCTCTGTGCATTTGGCCTGCAAGCTCTCCAGAGGCCTGAATTTTGTTaGGTAGCGACTGAGTTCTAC +
Preference number: 5 (lower is better)
Translates to: LAIQLCLELCAFGLQALQRPEFC*VATEFY
Trigger: GTAGAACTCAGTCGCTACCAAACAAAATTCAGGCCT...CTGGAGAGCTTGCAGGCCAAATGCACAGAGCTCAAGGCACAGCTGGATAGCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR CAA 90 bp TGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTCTTGGATGGGAGGCCTaGGATATGGGAACTCTCTTC +
Preference number: 5 (lower is better)
Translates to: WFISPLPMTLSGFHGPSCLGWEA*DMGTLF
Trigger: GAAGAGAGTTCCCATATCCAAGGCCTCCCATCCAAG...ACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp TGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTGTCCCTGGCTTTTGCTaGCTGAATCTCCAACTGCTC +
Preference number: 5 (lower is better)
Translates to: WFISPLPMTLSGFHGPSCVPGFC*LNLQLL
Trigger: GAGCAGTTGGAGATTCAGCAAGCAAAAGCCAGGGAC...ACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp CAGGACCATTTCAAGCTCACCTTCCATATTTCTTTTCTGCTGCAGCGCCTCATCCCTGGCCCTGAGTCTTaGCTTCCAGGAGCACAAGTT +
Preference number: 5 (lower is better)
Translates to: QDHFKLTFHISFLLQRLIPGPES*LPGAQV
Trigger: AACTTGTGCTCCTGGAAGCAAAGACTCAGGGCCAGG...GATGAGGCGCTGCAGCAGAAAAGAAATATGGAAGGTGAGCTTGAAATGGTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp CCTGGAGAAGGCTCCGCATCCTCCTGTTCTCCTTGGCAGTGGACTCCAGGACCATGGCTTTTTAGTTCATaGACAATTGATGTATGGACG +
Preference number: 5 (lower is better)
Translates to: PGEGSASSCSPWQWTPGPWLFSS*TIDVWT
Trigger: CGTCCATACATCAATTGTCAATGAACTAAAAAGCCA...TGGTCCTGGAGTCCACTGCCAAGGAGAACAGGAGGATGCGGAGCCTTCTCCAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp ATGCCGGGGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGACATCAATTCTCTTTaGGTATCGCCTGTTGGCCTT +
Preference number: 5 (lower is better)
Translates to: MPGLVYFSLAYDTQWLPRDINSL*VSPVGL
Trigger: AAGGCCAACAGGCGATACCAAAAGAGAATTGATGTC...CCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCCCCGGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS TCA 90 bp TCTCCTCCAGCTTGCCCAGGCGAATGTTGCCTTTCAGGATTTTGTTaGGGACCCCATGCTTCTCGCTCTCTAAACACTGAGCCAAATACT +
Preference number: 5 (lower is better)
Translates to: SPPACPGECCLSGFC*GPHASRSLNTEPNT
Trigger: AGTATTTGGCTCAGTGTTTAGAGAGCGAGAAGCATGGGGTCCTCAACAAAATCCTGAAAGGCAACATTCGCCTGGGCAAGCTGGAGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079414.12
CDS CCA 90 bp CGATGGACAATCATCTTCAGCCCCTCGTTTTCATCCACCAGGTCTTaGCTTTGCTTCCTTAGGCAAAGCAATTCAGGTGTGACTCCTTCC +
Preference number: 5 (lower is better)
Translates to: RWTIIFSPSFSSTRS*LCFLRQSNSGVTPS
Trigger: GGAAGGAGTCACACCTGAATTGCTTTGCCTAAGGAAGCAAAGCCAAGACCTGGTGGATGAAAACGAGGGGCTGAAGATGATTGTCCATCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000206230.2
CDS-3UTR CAA 90 bp GGCTGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTCCTTCAGCTTCCTGTaGTCTTTTTCCACCAACTTG +
Preference number: 5 (lower is better)
Translates to: GWFISPLPMTLSGFHGPSSFSFL*SFSTNL
Trigger: CAAGTTGGTGGAAAAAGACAACAGGAAGCTGAAGGA...AGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCAGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp TGGTTTATTTCTCCCTTGCCTATGACACTCAGTGGCTTCCACGGGCCTTCTTGTAGGGCGGTGCTGAGTTaGTCCTTCTCTTTCATTCTG +
Preference number: 5 (lower is better)
Translates to: WFISPLPMTLSGFHGPSCRAVLS*SFSFIL
Trigger: CAGAATGAAAGAGAAGGACAAACTCAGCACCGCCCT...ACAAGAAGGCCCGTGGAAGCCACTGAGTGTCATAGGCAAGGGAGAAATAAACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp TCCACGGGCCTTCTTGTCACACTGGCCCTCCTGAGGAGAGGAGGAAGTAGACACTGGCTTTTTAGTTCATaGACAATTGATGTATGGACG +
Preference number: 5 (lower is better)
Translates to: STGLLVTLALLRRGGSRHWLFSS*TIDVWT
Trigger: CGTCCATACATCAATTGTCAATGAACTAAAAAGCCA...GTGTCTACTTCCTCCTCTCCTCAGGAGGGCCAGTGTGACAAGAAGGCCCGTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS-3UTR CAA 90 bp TCCTTTTGCAACTGGCTTTTTAGTTCATTGACAATTGATGTATGGACGTCCACTGGTGGTGTGGGGCCCTaGGATGGGAGGCCTTGGATA +
Preference number: 5 (lower is better)
Translates to: SFCNWLFSSLTIDVWTSTGGVGP*DGRPWI
Trigger: TATCCAAGGCCTCCCATCCAAGGGCCCCACACCACC...AGTGGACGTCCATACATCAATTGTCAATGAACTAAAAAGCCAGTTGCAAAAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000206230.2
CDS-3UTR CAA 90 bp ACCATTTCAAGCTCACCTTCCATATTTCTTTTCTGCTGCAGCGCCTCATCCAGGAGGGCGGTGCTGAGTTaGTCCTTCTCTTTCATTCTG +
Preference number: 5 (lower is better)
Translates to: TISSSPSIFLFCCSASSRRAVLS*SFSFIL
Trigger: CAGAATGAAAGAGAAGGACAAACTCAGCACCGCCCT...CCTGGATGAGGCGCTGCAGCAGAAAAGAAATATGGAAGGTGAGCTTGAAATGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS TCA 90 bp TTAGTTAACTCTTGGTGCAAGGCTTCGTTTTCCTTCACGACTTCCTaGACTCGAAGCCTAAAGGTTTTCATTTCCTCCTCCAGGGCGGTG +
Preference number: 5 (lower is better)
Translates to: LVNSWCKASFSFTTS*TRSLKVFISSSRAV
Trigger: CACCGCCCTGGAGGAGGAAATGAAAACCTTTAGGCTTCGAGTTCAGGAAGTCGTGAAGGAAAACGAAGCCTTGCACCAAGAGTTAACTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS TCA 90 bp TTTGTCCTTCTCTTTCATTCTGTCTTCATAAGCCAGCAACAGTGGTaGGAGATACTTTATATCCACCAACCAGGGTGGTGTGGGGCCCTT +
Preference number: 5 (lower is better)
Translates to: FVLLFHSVFISQQQW*EILYIHQPGWCGAL
Trigger: AAGGGCCCCACACCACCCTGGTTGGTGGATATAAAGTATCTCTCACCACTGTTGCTGGCTTATGAAGACAGAATGAAAGAGAAGGACAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000206230.2
CDS CCA 90 bp TCTTCCTTTTGCAACTGGCTTTTTAGTTCATTGACAATTGATGTATaGACGTCCACTGCGATCTTGCTATCCAGCTGTGCCTTGAGCTCT +
Preference number: 5 (lower is better)
Translates to: SSFCNWLFSSLTIDV*TSTAILLSSCALSS
Trigger: AGAGCTCAAGGCACAGCTGGATAGCAAGATCGCAGTGGACGTCCATACATCAATTGTCAATGAACTAAAAAGCCAGTTGCAAAAGGAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS CCA 72 bp TGGAGAAGGGTTGGGGCTCCGAGGAGGGGGTGTGCGTaGCACCGCTGGCTTCGGAGCGATGCTGGCTGCGGG +
Preference number: 6 (lower is better)
Translates to: WRRVGAPRRGCA*HRWLRSDAGCG
Trigger: CCCGCAGCCAGCATCGCTCCGAAGCCAGCGGTGCCACGCACACCCCCTCCTCGGAGCCCCAACCCTTCTCCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000206854.2
CDS GCA 72 bp TCTCTGGAGAAGGGTTGGGGCTCCGAGGAGGGGGTGTaGGTGGCACCGCTGGCTTCGGAGCGATGCTGGCTG +
Preference number: 6 (lower is better)
Translates to: SLEKGWGSEEGV*VAPLASERCWL
Trigger: CAGCCAGCATCGCTCCGAAGCCAGCGGTGCCACGCACACCCCCTCCTCGGAGCCCCAACCCTTCTCCAGAGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000206854.2
CDS CCA 72 bp GCGTGCGCTCCAGCTCGGCCTCTAGCGCTCTGTTCCTaGTGGCCCAGCTGCTCTTCTCCAGAAGCAGGCTCT +
Preference number: 6 (lower is better)
Translates to: ACAPARPLALCS*WPSCSSPEAGS
Trigger: AGAGCCTGCTTCTGGAGAAGAGCAGCTGGGCCACCAGGAACAGAGCGCTAGAGGCCGAGCTGGAGCGCACGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS GCA 72 bp TGTGCGTGGCACCGCTGGCTTCGGAGCGATGCTGGCTaGGGGGAGGAAGCCATGGATGATGTGGTTGAACTG +
Preference number: 6 (lower is better)
Translates to: CAWHRWLRSDAG*GEEAMDDVVEL
Trigger: CAGTTCAACCACATCATCCATGGCTTCCTCCCCGCAGCCAGCATCGCTCCGAAGCCAGCGGTGCCACGCACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS GCA 72 bp CGAGATCTCTGGCGAGGCTGGGGAATGGCAACTGTCTaGCCAGTCAACGTGGTTGCCAGGATGGCTGCAGCC +
Preference number: 6 (lower is better)
Translates to: RDLWRGWGMATV*PVNVVARMAAA
Trigger: GGCTGCAGCCATCCTGGCAACCACGTTGACTGGGCAGACAGTTGCCATTCCCCAGCCTCGCCAGAGATCTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS GCA 72 bp AACTGTCTGCCCAGTCAACGTGGTTGCCAGGATGGCTaGAGCCAGAGCAGACCTGGGCCTCTCTGGAGAAGG +
Preference number: 6 (lower is better)
Translates to: NCLPSQRGCQDG*SQSRPGPLWRR
Trigger: CCTTCTCCAGAGAGGCCCAGGTCTGCTCTGGCTGCAGCCATCCTGGCAACCACGTTGACTGGGCAGACAGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS GCA 72 bp CAATTCTCTTTTGGTATCGCCTGTTGGCCTTGCGCGTaGGCTCCAGCTCGGCCTCTAGCGCTCTGTTCCTGG +
Preference number: 6 (lower is better)
Translates to: QFSFGIACWPCA*APARPLALCSW
Trigger: CCAGGAACAGAGCGCTAGAGGCCGAGCTGGAGCGCACGCGCAAGGCCAACAGGCGATACCAAAAGAGAATTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS CCA 72 bp CACTCTCAGACCGAGATCTCTGGCGAGGCTGGGGAATaGCAACTGTCTGCCCAGTCAACGTGGTTGCCAGGA +
Preference number: 6 (lower is better)
Translates to: HSQTEISGEAGE*QLSAQSTWLPG
Trigger: TCCTGGCAACCACGTTGACTGGGCAGACAGTTGCCATTCCCCAGCCTCGCCAGAGATCTCGGTCTGAGAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS GCA 72 bp GGACATCAATTCTCTTTTGGTATCGCCTGTTGGCCTTaGGCGTGCGCTCCAGCTCGGCCTCTAGCGCTCTGT +
Preference number: 6 (lower is better)
Translates to: GHQFSFGIACWP*ACAPARPLALC
Trigger: ACAGAGCGCTAGAGGCCGAGCTGGAGCGCACGCGCAAGGCCAACAGGCGATACCAAAAGAGAATTGATGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS CCA 72 bp GAGGCATCACTCTCAGACCGAGATCTCTGGCGAGGCTaGGGAATGGCAACTGTCTGCCCAGTCAACGTGGTT +
Preference number: 6 (lower is better)
Translates to: EASLSDRDLWRG*GMATVCPVNVV
Trigger: AACCACGTTGACTGGGCAGACAGTTGCCATTCCCCAGCCTCGCCAGAGATCTCGGTCTGAGAGTGATGCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS CCA 72 bp TCAATGTCGGAGGCATCACTCTCAGACCGAGATCTCTaGCGAGGCTGGGGAATGGCAACTGTCTGCCCAGTC +
Preference number: 6 (lower is better)
Translates to: SMSEASLSDRDL*RGWGMATVCPV
Trigger: GACTGGGCAGACAGTTGCCATTCCCCAGCCTCGCCAGAGATCTCGGTCTGAGAGTGATGCCTCCGACATTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS GCA 72 bp GTCCTGGAGGTGCGCCTGGTGGGTGTCCCTGGCTTTTaGTTGCTGAATCTCCAACTGCTCTATCAGCAGCTT +
Preference number: 6 (lower is better)
Translates to: VLEVRLVGVPGF*LLNLQLLYQQL
Trigger: AAGCTGCTGATAGAGCAGTTGGAGATTCAGCAAGCAAAAGCCAGGGACACCCACCAGGCGCACCTCCAGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS GCA 72 bp TTCCTTGGTGACAGTCTCTGCCAAGCCCACCAGGTTTaGCAGGTACTGGTGAGCAGACATCTCCTTCCCCAT +
Preference number: 6 (lower is better)
Translates to: FLGDSLCQAHQV*QVLVSRHLLPH
Trigger: ATGGGGAAGGAGATGTCTGCTCACCAGTACCTGGCAAACCTGGTGGGCTTGGCAGAGACTGTCACCAAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS CCA 72 bp TATATCCACCAACCAGGGTGGTGTGGGGCCCTTGGATaGGAGGCCTTGGATATGGGAACTCTCTTCCTCAGA +
Preference number: 6 (lower is better)
Translates to: YIHQPGWCGALG*EALDMGTLFLR
Trigger: TCTGAGGAAGAGAGTTCCCATATCCAAGGCCTCCCATCCAAGGGCCCCACACCACCCTGGTTGGTGGATATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000206230.2
CDS CAA 72 bp TTTCTGAGGACATCAATTCTCTTTTGGTATCGCCTGTaGGCCTTGCGCGTGCGCTCCAGCTCGGCCTCTAGC +
Preference number: 6 (lower is better)
Translates to: FLRTSILFWYRL*ALRVRSSSASS
Trigger: GCTAGAGGCCGAGCTGGAGCGCACGCGCAAGGCCAACAGGCGATACCAAAAGAGAATTGATGTCCTCAGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS CAA 90 bp GAGCTGCTTTTCCTGGCCCTGAGTCTTTGCTTCCAGGAGCACAAGTaGTTTAGTCAGCTTAGAAACGTCCTGGAGGTGCGCCTGGTGGGT +
Preference number: 6 (lower is better)
Translates to: ELLFLALSLCFQEHK*FSQLRNVLEVRLVG
Trigger: ACCCACCAGGCGCACCTCCAGGACGTTTCTAAGCTGACTAAACAACTTGTGCTCCTGGAAGCAAAGACTCAGGGCCAGGAAAAGCAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS CAA 90 bp TCTACTTGCTTTCTGAGGACATCAATTCTCTTTTGGTATCGCCTGTaGGCCTTGCGCGTGCGCTCCAGCTCGGCCTCTAGCGCTCTGTTC +
Preference number: 6 (lower is better)
Translates to: STCFLRTSILFWYRL*ALRVRSSSASSALF
Trigger: GAACAGAGCGCTAGAGGCCGAGCTGGAGCGCACGCGCAAGGCCAACAGGCGATACCAAAAGAGAATTGATGTCCTCAGAAAGCAAGTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS TCA 72 bp AGGTGCGCCTGGTGGGTGTCCCTGGCTTTTGCTTGCTaGATCTCCAACTGCTCTATCAGCAGCTTGTTCTCA +
Preference number: 6 (lower is better)
Translates to: RCAWWVSLAFAC*ISNCSISSLFS
Trigger: TGAGAACAAGCTGCTGATAGAGCAGTTGGAGATTCAGCAAGCAAAAGCCAGGGACACCCACCAGGCGCACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS CCA 72 bp ACTTTATATCCACCAACCAGGGTGGTGTGGGGCCCTTaGATGGGAGGCCTTGGATATGGGAACTCTCTTCCT +
Preference number: 6 (lower is better)
Translates to: TLYPPTRVVWGP*MGGLGYGNSLP
Trigger: AGGAAGAGAGTTCCCATATCCAAGGCCTCCCATCCAAGGGCCCCACACCACCCTGGTTGGTGGATATAAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000206230.2
CDS CCA 72 bp AGGAGCACAAGTTGTTTAGTCAGCTTAGAAACGTCCTaGAGGTGCGCCTGGTGGGTGTCCCTGGCTTTTGCT +
Preference number: 6 (lower is better)
Translates to: RSTSCLVSLETS*RCAWWVSLAFA
Trigger: AGCAAAAGCCAGGGACACCCACCAGGCGCACCTCCAGGACGTTTCTAAGCTGACTAAACAACTTGTGCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS CAA 72 bp TACTTTATATCCACCAACCAGGGTGGTGTGGGGCCCTaGGATGGGAGGCCTTGGATATGGGAACTCTCTTCC +
Preference number: 6 (lower is better)
Translates to: YFISTNQGGVGP*DGRPWIWELSS
Trigger: GGAAGAGAGTTCCCATATCCAAGGCCTCCCATCCAAGGGCCCCACACCACCCTGGTTGGTGGATATAAAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000206230.2
CDS CAA 90 bp GCTGTGCGCTTCTCCAGCATCAAATACTTAAGACTGTCTCGTTCCTaGGTGACAGTCTCTGCCAAGCCCACCAGGTTTGCCAGGTACTGG +
Preference number: 6 (lower is better)
Translates to: AVRFSSIKYLRLSRS*VTVSAKPTRFARYW
Trigger: CCAGTACCTGGCAAACCTGGTGGGCTTGGCAGAGACTGTCACCAAGGAACGAGACAGTCTTAAGTATTTGATGCTGGAGAAGCGCACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS CAA 90 bp GCTGCCTGCTTCTTGTACCCCAAATACTTAAGACTGTCTCGTTCCTaGGTGACAGTCTCTGCCAAGCCCACCAGGTTTGCCAGGTACTGG +
Preference number: 6 (lower is better)
Translates to: AACFLYPKYLRLSRS*VTVSAKPTRFARYW
Trigger: CCAGTACCTGGCAAACCTGGTGGGCTTGGCAGAGACTGTCACCAAGGAACGAGACAGTCTTAAGTATTTGGGGTACAAGAAGCAGGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150421.2
CDS TCA 72 bp TGCTCCGTGCTTTCCACGAGCTGCTTTTCCTGGCCCTaGGTCTTTGCTTCCAGGAGCACAAGTTGTTTAGTC +
Preference number: 6 (lower is better)
Translates to: CSVLSTSCFSWP*VFASRSTSCLV
Trigger: GACTAAACAACTTGTGCTCCTGGAAGCAAAGACTCAGGGCCAGGAAAAGCAGCTCGTGGAAAGCACGGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS GCA 72 bp ATACTTAAGACTGTCTCGTTCCTTGGTGACAGTCTCTaGCAAGCCCACCAGGTTTGCCAGGTACTGGTGAGC +
Preference number: 6 (lower is better)
Translates to: ILKTVSFLGDSL*QAHQVCQVLVS
Trigger: GCTCACCAGTACCTGGCAAACCTGGTGGGCTTGGCAGAGACTGTCACCAAGGAACGAGACAGTCTTAAGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000150421.2
CDS CAA 72 bp TTCCTGGCCCTGAGTCTTTGCTTCCAGGAGCACAAGTaGTTTAGTCAGCTTAGAAACGTCCTGGAGGTGCGC +
Preference number: 6 (lower is better)
Translates to: FLALSLCFQEHK*FSQLRNVLEVR
Trigger: GCGCACCTCCAGGACGTTTCTAAGCTGACTAAACAACTTGTGCTCCTGGAAGCAAAGACTCAGGGCCAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS CAA 90 bp GGTGAGAGATACTTTATATCCACCAACCAGGGTGGTGTGGGGCCCTaGGATGGGAGGCCTTGGATATGGGAACTCTCTTCCTCAGACAAA +
Preference number: 6 (lower is better)
Translates to: GERYFISTNQGGVGP*DGRPWIWELSSSDK
Trigger: TTTGTCTGAGGAAGAGAGTTCCCATATCCAAGGCCTCCCATCCAAGGGCCCCACACCACCCTGGTTGGTGGATATAAAGTATCTCTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000206230.2
CDS GCA 72 bp CTTCAGGCGGTGATGGATATCCCCCAGCTTCAGTGCTaGCTGCTTCTTGTACCCCAAATACTTAAGACTGTC +
Preference number: 6 (lower is better)
Translates to: LQAVMDIPQLQC*LLLVPQILKTV
Trigger: GACAGTCTTAAGTATTTGGGGTACAAGAAGCAGGCAGCACTGAAGCTGGGGGATATCCATCACCGCCTGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150421.2
CDS CAA 90 bp GCCTTTTCCGTCTCCTTCAGCTTCCTGTTGTCTTTTTCCACCAACTaGAGCTTCAGCTGTAAGTCCTTCATTGCCTGTCTCAGAGCGCTC +
Preference number: 6 (lower is better)
Translates to: AFSVSFSFLLSFSTN*SFSCKSFIACLRAL
Trigger: GAGCGCTCTGAGACAGGCAATGAAGGACTTACAGCTGAAGCTCAAGTTGGTGGAAAAAGACAACAGGAAGCTGAAGGAGACGGAAAAGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS TCA 72 bp CTTGGCTTTGCTTCCTTAGGCAAAGCAATTCAGGTGTaGCTCCTTCCTGACAGGAAGCCTTTTCCGTCTCCT +
Preference number: 6 (lower is better)
Translates to: LGFASLGKAIQV*LLPDRKPFPSP
Trigger: AGGAGACGGAAAAGGCTTCCTGTCAGGAAGGAGTCACACCTGAATTGCTTTGCCTAAGGAAGCAAAGCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000206230.2
CDS GCA 72 bp GCTTTCCACGAGCTGCTTTTCCTGGCCCTGAGTCTTTaGTTCCAGGAGCACAAGTTGTTTAGTCAGCTTAGA +
Preference number: 6 (lower is better)
Translates to: AFHELLFLALSL*FQEHKLFSQLR
Trigger: TCTAAGCTGACTAAACAACTTGTGCTCCTGGAAGCAAAGACTCAGGGCCAGGAAAAGCAGCTCGTGGAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS CAA 72 bp TGCCTGTCTCAGAGCGCTCAGTTCACAGCTGAGGGCTaGGTTTGCAGAGTACAGATGCACAGTTTCTTCTTT +
Preference number: 6 (lower is better)
Translates to: CLSQSAQFTAEG*VCRVQMHSFFF
Trigger: AAAGAAGAAACTGTGCATCTGTACTCTGCAAACCAAGCCCTCAGCTGTGAACTGAGCGCTCTGAGACAGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS CAA 72 bp TTCTCCAGCATCAAATACTTAAGACTGTCTCGTTCCTaGGTGACAGTCTCTGCCAAGCCCACCAGGTTTGCC +
Preference number: 6 (lower is better)
Translates to: FSSIKYLRLSRS*VTVSAKPTRFA
Trigger: GGCAAACCTGGTGGGCTTGGCAGAGACTGTCACCAAGGAACGAGACAGTCTTAAGTATTTGATGCTGGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141704.8
CDS CAA 72 bp TTCTTGTACCCCAAATACTTAAGACTGTCTCGTTCCTaGGTGACAGTCTCTGCCAAGCCCACCAGGTTTGCC +
Preference number: 6 (lower is better)
Translates to: FLYPKYLRLSRS*VTVSAKPTRFA
Trigger: GGCAAACCTGGTGGGCTTGGCAGAGACTGTCACCAAGGAACGAGACAGTCTTAAGTATTTGGGGTACAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150421.2
CDS TCA 72 bp TCTAGATTCAGAACAGAGTGTTTAACATCTTTCTGCTaGGTGTGCTGTGGTGTTGAGGAGGAGGAGGAGGAG +
Preference number: 6 (lower is better)
Translates to: SRFRTECLTSFC*VCCGVEEEEEE
Trigger: CTCCTCCTCCTCCTCCTCAACACCACAGCACACTCAGCAGAAAGATGTTAAACACTCTGTTCTGAATCTAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS TCA 72 bp TCTTGGTGCAAGGCTTCGTTTTCCTTCACGACTTCCTaGACTCGAAGCCTAAAGGTTTTCATTTCCTCCTCC +
Preference number: 6 (lower is better)
Translates to: SWCKASFSFTTS*TRSLKVFISSS
Trigger: GGAGGAGGAAATGAAAACCTTTAGGCTTCGAGTTCAGGAAGTCGTGAAGGAAAACGAAGCCTTGCACCAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS CAA 72 bp GTCTCCTTCAGCTTCCTGTTGTCTTTTTCCACCAACTaGAGCTTCAGCTGTAAGTCCTTCATTGCCTGTCTC +
Preference number: 6 (lower is better)
Translates to: VSFSFLLSFSTN*SFSCKSFIACL
Trigger: GAGACAGGCAATGAAGGACTTACAGCTGAAGCTCAAGTTGGTGGAAAAAGACAACAGGAAGCTGAAGGAGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
CDS CAA 72 bp GGAACTCTCTTCCTCAGACAAAGGCCTGAATTTTGTTaGGTAGCGACTGAGTTCTACGTTCAATCGATGGAC +
Preference number: 6 (lower is better)
Translates to: GTLFLRQRPEFC*VATEFYVQSMD
Trigger: GTCCATCGATTGAACGTAGAACTCAGTCGCTACCAAACAAAATTCAGGCCTTTGTCTGAGGAAGAGAGTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000206230.2
CDS TCA 72 bp CTCTTTCATTCTGTCTTCATAAGCCAGCAACAGTGGTaGGAGATACTTTATATCCACCAACCAGGGTGGTGT +
Preference number: 6 (lower is better)
Translates to: LFHSVFISQQQW*EILYIHQPGWC
Trigger: ACACCACCCTGGTTGGTGGATATAAAGTATCTCTCACCACTGTTGCTGGCTTATGAAGACAGAATGAAAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000206230.2
CDS CAA 90 bp TTGGATATGGGAACTCTCTTCCTCAGACAAAGGCCTGAATTTTGTTaGGTAGCGACTGAGTTCTACGTTCAATCGATGGACAATCATCTT +
Preference number: 6 (lower is better)
Translates to: LDMGTLFLRQRPEFC*VATEFYVQSMDNHL
Trigger: AAGATGATTGTCCATCGATTGAACGTAGAACTCAGTCGCTACCAAACAAAATTCAGGCCTTTGTCTGAGGAAGAGAGTTCCCATATCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079414.12
ENSMUST00000141704.8
ENSMUST00000206230.2