Pregenerated sensors for CEP83 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020024Ensembl transcript IDs: ENSMUST00000020212.6
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TCACTGCTTCAAGTAAGACCAACAACTCTTTACAGCCACAGGACTTCATTTTCTGAGGCATCTCAAAGATaGGGAAAAGGGACTTCAGGG | + |
|
Preference number: 2 (lower is better) Translates to: SLLQVRPTTLYSHRTSFSEASQR*GKGTSG Trigger: CCCTGAAGTCCCTTTTCCTCATCTTTGAGATGCCTC...AGAAAATGAAGTCCTGTGGCTGTAAAGAGTTGTTGGTCTTACTTGAAGCAGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| 3UTR-3UTR CCA 90 bp | TCACTGCTTCAAGTAAGACCAACAACTCTTTACAGCCACAGGACTTCATTTTCTATAATCCTAAAATCTTaGAGCCCATGCAGTGCGCTG | + |
|
Preference number: 2 (lower is better) Translates to: SLLQVRPTTLYSHRTSFSIILKS*SPCSAL Trigger: CAGCGCACTGCATGGGCTCCAAGATTTTAGGATTAT...AGAAAATGAAGTCCTGTGGCTGTAAAGAGTTGTTGGTCTTACTTGAAGCAGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| 3UTR TCA 72 bp | TTGGAGCCCATGCAGTGCGCTGCTAGTACCTTTTCTTaGGGCAGCTCATGGATTTTGGCAAACAGGAAGAAG | + |
|
Preference number: 3 (lower is better) Translates to: LEPMQCAASTFS*GSSWILANRKK Trigger: CTTCTTCCTGTTTGCCAAAATCCATGAGCTGCCTCAAGAAAAGGTACTAGCAGCGCACTGCATGGGCTCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| 3UTR-3UTR CAA 90 bp | TCACTGCTTCAAGTAAGACCAACAACTCTTTACAGCCACAGGACTTCATTTTCTTATAATCCTAAAATCTaGGAGCCCATGCAGTGCGCT | + |
|
Preference number: 3 (lower is better) Translates to: SLLQVRPTTLYSHRTSFSYNPKI*EPMQCA Trigger: AGCGCACTGCATGGGCTCCAAGATTTTAGGATTATA...AGAAAATGAAGTCCTGTGGCTGTAAAGAGTTGTTGGTCTTACTTGAAGCAGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| 3UTR TCA 72 bp | ATTGGTTTTGTCATTACCAAGGAGGCATCTCAAAGATaGGGAAAAGGGACTTCAGGGTGGATATATTTCAAG | + |
|
Preference number: 3 (lower is better) Translates to: IGFVITKEASQR*GKGTSGWIYFK Trigger: CTTGAAATATATCCACCCTGAAGTCCCTTTTCCTCATCTTTGAGATGCCTCCTTGGTAATGACAAAACCAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR GCA 90 bp | GCGTCTCAGTGCCACACGTTACCCGTCAGACTTTTATTGAGTCTCTGGCTTTGCTGCTCTGCAGCTCCCTaGGGGCTGCCTCCTCTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: ASQCHTLPVRLLLSLWLCCSAAP*GLPPLP Trigger: TGGCAGAGGAGGCAGCCCGCAGGGAGCTGCAGAGCA...GCAAAGCCAGAGACTCAATAAAAGTCTGACGGGTAACGTGTGGCACTGAGACGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CCA 90 bp | GCGTCTCAGTGCCACACGTTACCCGTCAGACTTTTATTGAGTCTCTGGCTTTGCGCCTCCTCTGCCATCTaGGAGGCCCGCAGCTTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: ASQCHTLPVRLLLSLWLCASSAI*EARSFS Trigger: GGAGAAGCTGCGGGCCTCCCAGATGGCAGAGGAGGC...GCAAAGCCAGAGACTCAATAAAAGTCTGACGGGTAACGTGTGGCACTGAGACGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR GCA 90 bp | GGCGTCTCAGTGCCACACGTTACCCGTCAGACTTTTATTGAGTCTCTGGCTTTGGATCTGAGTGTAGCCTaGATCTCAGCCAACTGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: GVSVPHVTRQTFIESLALDLSVA*ISANCL Trigger: GAGGCAGTTGGCTGAGATGCAGGCTACACTCAGATC...CAAAGCCAGAGACTCAATAAAAGTCTGACGGGTAACGTGTGGCACTGAGACGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR GCA 90 bp | GCGTCTCAGTGCCACACGTTACCCGTCAGACTTTTATTGAGTCTCTGGCTTTGCCGCTCATGGAGCTTGTaGTTTTCTTCCAACCACTGG | + |
|
Preference number: 4 (lower is better) Translates to: ASQCHTLPVRLLLSLWLCRSWSL*FSSNHW Trigger: CCAGTGGTTGGAAGAAAAGCACAAGCTCCATGAGCG...GCAAAGCCAGAGACTCAATAAAAGTCTGACGGGTAACGTGTGGCACTGAGACGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR GCA 90 bp | TCTTGGAGCCCATGCAGTGCGCTGCTAGTACCTTTTCTTGAGGCAGCTCATGGAAGCAGGACTAATCGATaGTGTTGGAGGCATGTTAGG | + |
|
Preference number: 4 (lower is better) Translates to: SWSPCSALLVPFLEAAHGSRTNR*CWRHVR Trigger: CCTAACATGCCTCCAACAGCATCGATTAGTCCTGCT...TCCATGAGCTGCCTCAAGAAAAGGTACTAGCAGCGCACTGCATGGGCTCCAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR GCA 90 bp | TCATGGATTTTGGCAAACAGGAAGAAGGCGTCTCAGTGCCACACGTTACCCGTCCTCACTCTTAGCTCTTaGTGCCTCCAGTTTGATGTC | + |
|
Preference number: 4 (lower is better) Translates to: SWILANRKKASQCHTLPVLTLSS*CLQFDV Trigger: GACATCAAACTGGAGGCAGCAAGAGCTAAGAGTGAG...GACGGGTAACGTGTGGCACTGAGACGCCTTCTTCCTGTTTGCCAAAATCCATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR GCA 90 bp | GCGTCTCAGTGCCACACGTTACCCGTCAGACTTTTATTGAGTCTCTGGCTTTGCGTTCTTCCAGTCTTTTaGGAAGGAGAGAGAGCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: ASQCHTLPVRLLLSLWLCVLPVF*EGERAL Trigger: GAGAGCTCTCTCTCCTTCGCAAAAGACTGGAAGAAC...GCAAAGCCAGAGACTCAATAAAAGTCTGACGGGTAACGTGTGGCACTGAGACGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR GCA 90 bp | TCTTGGAGCCCATGCAGTGCGCTGCTAGTACCTTTTCTTGAGGCAGCTCATGGATGTAGTTTAGCTGACTaGTTTTCAGCCTCCAAGGAT | + |
|
Preference number: 4 (lower is better) Translates to: SWSPCSALLVPFLEAAHGCSLAD*FSASKD Trigger: ATCCTTGGAGGCTGAAAAGCAGTCAGCTAAACTACA...TCCATGAGCTGCCTCAAGAAAAGGTACTAGCAGCGCACTGCATGGGCTCCAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR GCA 90 bp | GGCGTCTCAGTGCCACACGTTACCCGTCAGACTTTTATTGAGTCTCTGGCTTTGACTCTTAGCTCTTGCTaGCTCCAGTTTGATGTCAGT | + |
|
Preference number: 4 (lower is better) Translates to: GVSVPHVTRQTFIESLALTLSSC*LQFDVS Trigger: ACTGACATCAAACTGGAGGCAGCAAGAGCTAAGAGT...CAAAGCCAGAGACTCAATAAAAGTCTGACGGGTAACGTGTGGCACTGAGACGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR TCA 90 bp | TCTTGGAGCCCATGCAGTGCGCTGCTAGTACCTTTTCTTGAGGCAGCTCATGGAGAGAATTTCATTGTCTaGCTGCAATCCATCAAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: SWSPCSALLVPFLEAAHGENFIV*LQSIKF Trigger: GAACTTGATGGATTGCAGTCAGACAATGAAATTCTC...TCCATGAGCTGCCTCAAGAAAAGGTACTAGCAGCGCACTGCATGGGCTCCAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR TCA 90 bp | TCATGGATTTTGGCAAACAGGAAGAAGGCGTCTCAGTGCCACACGTTACCCGTCGGATCTGCAAATGACTaGTTTGCTGTTTCAGTTCAG | + |
|
Preference number: 4 (lower is better) Translates to: SWILANRKKASQCHTLPVGSAND*FAVSVQ Trigger: CTGAACTGAAACAGCAAATCAGTCATTTGCAGATCC...GACGGGTAACGTGTGGCACTGAGACGCCTTCTTCCTGTTTGCCAAAATCCATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CCA 90 bp | TCATGGATTTTGGCAAACAGGAAGAAGGCGTCTCAGTGCCACACGTTACCCGTCTCTTCAAGGAGCAGTTaGAATTTTTCCTGGCTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: SWILANRKKASQCHTLPVSSRSS*NFSWLA Trigger: AGCAAGCCAGGAAAAATTCCAACTGCTCCTTGAAGA...GACGGGTAACGTGTGGCACTGAGACGCCTTCTTCCTGTTTGCCAAAATCCATGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CCA 90 bp | GGCGTCTCAGTGCCACACGTTACCCGTCAGACTTTTATTGAGTCTCTGGCTTTGTCAACACTAAGCAGCTaGTTATGTAGCTCCTCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: GVSVPHVTRQTFIESLALSTLSS*LCSSSL Trigger: CAAAGAGGAGCTACATAACCAGCTGCTTAGTGTTGA...CAAAGCCAGAGACTCAATAAAAGTCTGACGGGTAACGTGTGGCACTGAGACGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CCA 90 bp | TCTTGGAGCCCATGCAGTGCGCTGCTAGTACCTTTTCTTGAGGCAGCTCATGGAATGTCCTTCAGCATGTaGTTTGAATTCAGTAAGTCG | + |
|
Preference number: 4 (lower is better) Translates to: SWSPCSALLVPFLEAAHGMSFSM*FEFSKS Trigger: CGACTTACTGAATTCAAACCACATGCTGAAGGACAT...TCCATGAGCTGCCTCAAGAAAAGGTACTAGCAGCGCACTGCATGGGCTCCAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CCA 90 bp | GCGTCTCAGTGCCACACGTTACCCGTCAGACTTTTATTGAGTCTCTGGCTTTGCTGTGCTTTCTCAGCTTaGCTCCTTAAATTTCGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: ASQCHTLPVRLLLSLWLCCAFSA*LLKFRH Trigger: ATGCCGAAATTTAAGGAGCCAAGCTGAGAAAGCACA...GCAAAGCCAGAGACTCAATAAAAGTCTGACGGGTAACGTGTGGCACTGAGACGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CCA 90 bp | TCATGGATTTTGGCAAACAGGAAGAAGGCGTCTCAGTGCCACACGTTACCCGTCACTAATCGATGCTGTTaGAGGCATGTTAGGAACCAA | + |
|
Preference number: 4 (lower is better) Translates to: SWILANRKKASQCHTLPVTNRCC*RHVRNQ Trigger: TTGGTTCCTAACATGCCTCCAACAGCATCGATTAGT...GACGGGTAACGTGTGGCACTGAGACGCCTTCTTCCTGTTTGCCAAAATCCATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR TCA 90 bp | GCGTCTCAGTGCCACACGTTACCCGTCAGACTTTTATTGAGTCTCTGGCTTTGCCATTTTCTCTTCTTCTaGAACCCGAGTAAACTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: ASQCHTLPVRLLLSLWLCHFLFF*NPSKLF Trigger: GAAGAGTTTACTCGGGTTTCAGAAGAAGAGAAAATG...GCAAAGCCAGAGACTCAATAAAAGTCTGACGGGTAACGTGTGGCACTGAGACGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR TCA 90 bp | TCATGGATTTTGGCAAACAGGAAGAAGGCGTCTCAGTGCCACACGTTACCCGTCTTGCTGCCTCCAGTTTaGTGTCAGTTATTTCTAGTT | + |
|
Preference number: 4 (lower is better) Translates to: SWILANRKKASQCHTLPVLLPPV*CQLFLV Trigger: AACTAGAAATAACTGACATCAAACTGGAGGCAGCAA...GACGGGTAACGTGTGGCACTGAGACGCCTTCTTCCTGTTTGCCAAAATCCATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR TCA 90 bp | GCGTCTCAGTGCCACACGTTACCCGTCAGACTTTTATTGAGTCTCTGGCTTTGCGTTCAACAGTTGACTTaGGAATTTCATTGTCTGACT | + |
|
Preference number: 4 (lower is better) Translates to: ASQCHTLPVRLLLSLWLCVQQLT*EFHCLT Trigger: AGTCAGACAATGAAATTCTCAAGTCAACTGTTGAAC...GCAAAGCCAGAGACTCAATAAAAGTCTGACGGGTAACGTGTGGCACTGAGACGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR TCA 90 bp | GGCATCTCAAAGATGAGGAAAAGGGACTTCAGGGTGGATATATTTCAAGCAAAACTCCGACTGTGTCAGTaGGGTCACTTGGATCTGCAA | + |
|
Preference number: 4 (lower is better) Translates to: GISKMRKRDFRVDIFQAKLRLCQ*GHLDLQ Trigger: TTGCAGATCCAAGTGACCTCACTGACACAGTCGGAG...TTTTGCTTGAAATATATCCACCCTGAAGTCCCTTTTCCTCATCTTTGAGATGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR GCA 90 bp | CAAACTAAATGTCAGCGGTACTTCAATACCTCACTGCTTCAAGTAAGACCAACATCCAGGAACTGTCACTaGGGACTGGAAGTTAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: QTKCQRYFNTSLLQVRPTSRNCH*GLEVSR Trigger: CCTGCTAACTTCCAGTCCGCAGTGACAGTTCCTGGA...TGTTGGTCTTACTTGAAGCAGTGAGGTATTGAAGTACCGCTGACATTTAGTTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CCA 90 bp | TCTTGGAGCCCATGCAGTGCGCTGCTAGTACCTTTTCTTGAGGCAGCTCATGGAAGTTGGAATTTTTCCTaGCTTGCTTGCTTTTCAATT | + |
|
Preference number: 4 (lower is better) Translates to: SWSPCSALLVPFLEAAHGSWNFS*LACFSI Trigger: AATTGAAAAGCAAGCAAGCCAGGAAAAATTCCAACT...TCCATGAGCTGCCTCAAGAAAAGGTACTAGCAGCGCACTGCATGGGCTCCAAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR GCA 90 bp | TCATGGATTTTGGCAAACAGGAAGAAGGCGTCTCAGTGCCACACGTTACCCGTCTTTTCCTGGCTTGCTTaGTTTTCAATTAATACACGT | + |
|
Preference number: 4 (lower is better) Translates to: SWILANRKKASQCHTLPVFSWLA*FSINTR Trigger: ACGTGTATTAATTGAAAAGCAAGCAAGCCAGGAAAA...GACGGGTAACGTGTGGCACTGAGACGCCTTCTTCCTGTTTGCCAAAATCCATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CCA 90 bp | GGCGTCTCAGTGCCACACGTTACCCGTCAGACTTTTATTGAGTCTCTGGCTTTGTCAATTAACATATTTTaGAACTCAGGCTCAGGATTC | + |
|
Preference number: 4 (lower is better) Translates to: GVSVPHVTRQTFIESLALSINIF*NSGSGF Trigger: GAATCCTGAGCCTGAGTTCCAAAATATGTTAATTGA...CAAAGCCAGAGACTCAATAAAAGTCTGACGGGTAACGTGTGGCACTGAGACGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR TCA 90 bp | CAAACTAAATGTCAGCGGTACTTCAATACCTCACTGCTTCAAGTAAGACCAACAAGAGAGAGCTCTCTTTaGTGTTGTTCCTCCTGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: QTKCQRYFNTSLLQVRPTRESSL*CCSSCR Trigger: TCTGCAGGAGGAACAACATCAAAGAGAGCTCTCTCT...TGTTGGTCTTACTTGAAGCAGTGAGGTATTGAAGTACCGCTGACATTTAGTTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CCA 90 bp | CCAAGGAGGCATCTCAAAGATGAGGAAAAGGGACTTCAGGGTGGATATATTTCAGGTAACCTTCTTCCTTaGCAGCTTGTACTTTACGTA | + |
|
Preference number: 4 (lower is better) Translates to: PRRHLKDEEKGLQGGYISGNLLP*QLVLYV Trigger: TACGTAAAGTACAAGCTGCCAAGGAAGAAGGTTACC...TGAAATATATCCACCCTGAAGTCCCTTTTCCTCATCTTTGAGATGCCTCCTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR TCA 90 bp | TCACTGCTTCAAGTAAGACCAACAACTCTTTACAGCCACAGGACTTCATTTTCTTTTCTTCTCTGTCTGTaGTTCGCTCATGGAGCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: SLLQVRPTTLYSHRTSFSFLLCL*FAHGAC Trigger: ACAAGCTCCATGAGCGAATCACAGACAGAGAAGAAA...AGAAAATGAAGTCCTGTGGCTGTAAAGAGTTGTTGGTCTTACTTGAAGCAGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR GCA 90 bp | CAAACTAAATGTCAGCGGTACTTCAATACCTCACTGCTTCAAGTAAGACCAACATCTCGGTCAGCTCTATaGAGTTTGCTGATTAAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: QTKCQRYFNTSLLQVRPTSRSAL*SLLIKQ Trigger: CTGCTTAATCAGCAAACTGCATAGAGCTGACCGAGA...TGTTGGTCTTACTTGAAGCAGTGAGGTATTGAAGTACCGCTGACATTTAGTTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CCA 90 bp | GGCATCTCAAAGATGAGGAAAAGGGACTTCAGGGTGGATATATTTCAAGCAAAATCTGTGATTCGCTCATaGAGCTTGTGCTTTTCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: GISKMRKRDFRVDIFQAKSVIRS*SLCFSS Trigger: GGAAGAAAAGCACAAGCTCCATGAGCGAATCACAGA...TTTTGCTTGAAATATATCCACCCTGAAGTCCCTTTTCCTCATCTTTGAGATGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR TCA 90 bp | CAAACTAAATGTCAGCGGTACTTCAATACCTCACTGCTTCAAGTAAGACCAACACTCTATGCAGTTTGCTaGTTAAGCAGGTATTCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: QTKCQRYFNTSLLQVRPTLYAVC*LSRYSV Trigger: AACAGAATACCTGCTTAATCAGCAAACTGCATAGAG...TGTTGGTCTTACTTGAAGCAGTGAGGTATTGAAGTACCGCTGACATTTAGTTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR GCA 90 bp | CAAACTAAATGTCAGCGGTACTTCAATACCTCACTGCTTCAAGTAAGACCAACATTTTCTCGAACAAGTTaGTCCATTCGTTTGCTGTCT | + |
|
Preference number: 4 (lower is better) Translates to: QTKCQRYFNTSLLQVRPTFSRTS*SIRLLS Trigger: AGACAGCAAACGAATGGAGCAACTTGTTCGAGAAAA...TGTTGGTCTTACTTGAAGCAGTGAGGTATTGAAGTACCGCTGACATTTAGTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR GCA 90 bp | CCAAGGAGGCATCTCAAAGATGAGGAAAAGGGACTTCAGGGTGGATATATTTCAATTTCATTGTCTGACTaGAATCCATCAAGTTCACTT | + |
|
Preference number: 4 (lower is better) Translates to: PRRHLKDEEKGLQGGYISISLSD*NPSSSL Trigger: AAGTGAACTTGATGGATTGCAGTCAGACAATGAAAT...TGAAATATATCCACCCTGAAGTCCCTTTTCCTCATCTTTGAGATGCCTCCTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR TCA 90 bp | CCACATAAATTTAAGCTTCCGTTTGCTGACATGAAATTATTCCAGTGGAATCCCGTTCAAACTCTGACTTaGGAAATGTATACTCGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: PHKFKLPFADMKLFQWNPVQTLT*EMYTRS Trigger: GCTACGAGTATACATTTCTCAAGTCAGAGTTTGAAC...GGGATTCCACTGGAATAATTTCATGTCAGCAAACGGAAGCTTAAATTTATGTGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CCA 90 bp | CAAACTAAATGTCAGCGGTACTTCAATACCTCACTGCTTCAAGTAAGACCAACAGTAAACTCTTCTTTCTaGTGTTCAAACTCTGACTTG | + |
|
Preference number: 4 (lower is better) Translates to: QTKCQRYFNTSLLQVRPTVNSSF*CSNSDL Trigger: CAAGTCAGAGTTTGAACACCAGAAAGAAGAGTTTAC...TGTTGGTCTTACTTGAAGCAGTGAGGTATTGAAGTACCGCTGACATTTAGTTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CCA 90 bp | TCACTGCTTCAAGTAAGACCAACAACTCTTTACAGCCACAGGACTTCATTTTCTGCTGTAGCTTTTCCTTaGCTTGGTTATACTTTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: SLLQVRPTTLYSHRTSFSAVAFP*LGYTFL Trigger: AAGAAAAGTATAACCAAGCCAAGGAAAAGCTACAGC...AGAAAATGAAGTCCTGTGGCTGTAAAGAGTTGTTGGTCTTACTTGAAGCAGTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| 3UTR CAA 72 bp | CTAAATTACTTTCCAGGAACAAGATGTCACGGTACATaGCATATAAATAAGCAGCTCCGCTCAGTAAACCAA | + |
|
Preference number: 4 (lower is better) Translates to: LNYFPGTRCHGT*HINKQLRSVNQ Trigger: TTGGTTTACTGAGCGGAGCTGCTTATTTATATGCAATGTACCGTGACATCTTGTTCCTGGAAAGTAATTTAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS CCA 90 bp | AACCTAGTGCTCTGCAGCTCCCTGCGGGCTGCCTCCTCTGCCATCTaGGAGGCCCGCAGCTTCTCCTCACACTGCTCCTTTTCCGACTGC | + |
|
Preference number: 5 (lower is better) Translates to: NLVLCSSLRAASSAI*EARSFSSHCSFSDC Trigger: GCAGTCGGAAAAGGAGCAGTGTGAGGAGAAGCTGCGGGCCTCCCAGATGGCAGAGGAGGCAGCCCGCAGGGAGCTGCAGAGCACTAGGTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS GCA 90 bp | GCTGCCTCCTCTGCCATCTGGGAGGCCCGCAGCTTCTCCTCACACTaGTCCTTTTCCGACTGCCTCCAGACATCACGCTCCACCTTCATC | + |
|
Preference number: 5 (lower is better) Translates to: AASSAIWEARSFSSH*SFSDCLQTSRSTFI Trigger: GATGAAGGTGGAGCGTGATGTCTGGAGGCAGTCGGAAAAGGAGCAGTGTGAGGAGAAGCTGCGGGCCTCCCAGATGGCAGAGGAGGCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS GCA 90 bp | ATCTGGGAGGCCCGCAGCTTCTCCTCACACTGCTCCTTTTCCGACTaGCTCCAGACATCACGCTCCACCTTCATCTTCTCTAAGTCTGAT | + |
|
Preference number: 5 (lower is better) Translates to: IWEARSFSSHCSFSD*LQTSRSTFIFSKSD Trigger: ATCAGACTTAGAGAAGATGAAGGTGGAGCGTGATGTCTGGAGGCAGTCGGAAAAGGAGCAGTGTGAGGAGAAGCTGCGGGCCTCCCAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS GCA 90 bp | CTGCAGATGAGGGGGAAAAGAGAGTTCCGCTCCAGGAACTGTCACTaGGGACTGGAAGTTAGCAGGACTAATCGATGCTGTTGGAGGCAT | + |
|
Preference number: 5 (lower is better) Translates to: LQMRGKREFRSRNCH*GLEVSRTNRCCWRH Trigger: ATGCCTCCAACAGCATCGATTAGTCCTGCTAACTTCCAGTCCGCAGTGACAGTTCCTGGAGCGGAACTCTCTTTTCCCCCTCATCTGCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CAA 90 bp | TCTTGGAGCCCATGCAGTGCGCTGCTAGTACCTTTTCTTGAGGCAGCTCATGGAATTCGCTCATGGAGCTaGTGCTTTTCTTCCAACCAC | + |
|
Preference number: 5 (lower is better) Translates to: SWSPCSALLVPFLEAAHGIRSWS*CFSSNH Trigger: GTGGTTGGAAGAAAAGCACAAGCTCCATGAGCGAAT...TCCATGAGCTGCCTCAAGAAAAGGTACTAGCAGCGCACTGCATGGGCTCCAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CAA 90 bp | TCATGGATTTTGGCAAACAGGAAGAAGGCGTCTCAGTGCCACACGTTACCCGTCTTTTTCTCGAACAAGTaGCTCCATTCGTTTGCTGTC | + |
|
Preference number: 5 (lower is better) Translates to: SWILANRKKASQCHTLPVFFSNK*LHSFAV Trigger: GACAGCAAACGAATGGAGCAACTTGTTCGAGAAAAA...GACGGGTAACGTGTGGCACTGAGACGCCTTCTTCCTGTTTGCCAAAATCCATGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CAA 90 bp | GGCGTCTCAGTGCCACACGTTACCCGTCAGACTTTTATTGAGTCTCTGGCTTTGGAAAACGTTCTCGCATaGGAGCTTCTAATTCTTGTT | + |
|
Preference number: 5 (lower is better) Translates to: GVSVPHVTRQTFIESLALENVLA*ELLILV Trigger: AACAAGAATTAGAAGCTCCAATGCGAGAACGTTTTC...CAAAGCCAGAGACTCAATAAAAGTCTGACGGGTAACGTGTGGCACTGAGACGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS GCA 90 bp | GATTGTAGTTCTTTTTCTAAACGCTCAGCTTGTAGTTTAGCTGACTaGTTTTCAGCCTCCAAGGATCTGAGTGTAGCCTGCATCTCAGCC | + |
|
Preference number: 5 (lower is better) Translates to: DCSSFSKRSACSLAD*FSASKDLSVACISA Trigger: GGCTGAGATGCAGGCTACACTCAGATCCTTGGAGGCTGAAAAGCAGTCAGCTAAACTACAAGCTGAGCGTTTAGAAAAAGAACTACAATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS CCA 90 bp | TTTCGGCATTCTTGTTTTAGTCTCTCCACCATGTCCTTCAGCATGTaGTTTGAATTCAGTAAGTCGTTCTCCGACTGTGTCAGTGAGGTC | + |
|
Preference number: 5 (lower is better) Translates to: FRHSCFSLSTMSFSM*FEFSKSFSDCVSEV Trigger: GACCTCACTGACACAGTCGGAGAACGACTTACTGAATTCAAACCACATGCTGAAGGACATGGTGGAGAGACTAAAACAAGAATGCCGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CAA 90 bp | CCAAGGAGGCATCTCAAAGATGAGGAAAAGGGACTTCAGGGTGGATATATTTCAAGTTCTTCCAGTCTTTaGCGAAGGAGAGAGAGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: PRRHLKDEEKGLQGGYISSSSSL*RRRESS Trigger: AGAGCTCTCTCTCCTTCGCAAAAGACTGGAAGAACT...TGAAATATATCCACCCTGAAGTCCCTTTTCCTCATCTTTGAGATGCCTCCTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CAA 90 bp | GGCATCTCAAAGATGAGGAAAAGGGACTTCAGGGTGGATATATTTCAAGCAAAAGAGAGAGAGCTCTCTTaGATGTTGTTCCTCCTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: GISKMRKRDFRVDIFQAKERELS*MLFLLQ Trigger: CTGCAGGAGGAACAACATCAAAGAGAGCTCTCTCTC...TTTTGCTTGAAATATATCCACCCTGAAGTCCCTTTTCCTCATCTTTGAGATGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS GCA 90 bp | TCTTTCACTTCACTGGCCAGTGTGCTGATTTCTCGGTCAGCTCTATaGAGTTTGCTGATTAAGCAGGTATTCTGTTCATTGCTTGATTGT | + |
|
Preference number: 5 (lower is better) Translates to: SFTSLASVLISRSAL*SLLIKQVFCSLLDC Trigger: ACAATCAAGCAATGAACAGAATACCTGCTTAATCAGCAAACTGCATAGAGCTGACCGAGAAATCAGCACACTGGCCAGTGAAGTGAAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CAA 90 bp | GGCATCTCAAAGATGAGGAAAAGGGACTTCAGGGTGGATATATTTCAAGCAAAATCTTCCTGCAACCTTTaGTGTTCAATTTTCAGAGCC | + |
|
Preference number: 5 (lower is better) Translates to: GISKMRKRDFRVDIFQAKSSCNL*CSIFRA Trigger: GGCTCTGAAAATTGAACACAAAAGGTTGCAGGAAGA...TTTTGCTTGAAATATATCCACCCTGAAGTCCCTTTTCCTCATCTTTGAGATGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CAA 90 bp | TCACTGCTTCAAGTAAGACCAACAACTCTTTACAGCCACAGGACTTCATTTTCTTCAGCTCTATGCAGTTaGCTGATTAAGCAGGTATTC | + |
|
Preference number: 5 (lower is better) Translates to: SLLQVRPTTLYSHRTSFSSALCS*LIKQVF Trigger: GAATACCTGCTTAATCAGCAAACTGCATAGAGCTGA...AGAAAATGAAGTCCTGTGGCTGTAAAGAGTTGTTGGTCTTACTTGAAGCAGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CAA 90 bp | TCACTGCTTCAAGTAAGACCAACAACTCTTTACAGCCACAGGACTTCATTTTCTCTTGCTGCCTCCAGTTaGATGTCAGTTATTTCTAGT | + |
|
Preference number: 5 (lower is better) Translates to: SLLQVRPTTLYSHRTSFSLAASS*MSVISS Trigger: ACTAGAAATAACTGACATCAAACTGGAGGCAGCAAG...AGAAAATGAAGTCCTGTGGCTGTAAAGAGTTGTTGGTCTTACTTGAAGCAGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CAA 90 bp | CAAACTAAATGTCAGCGGTACTTCAATACCTCACTGCTTCAAGTAAGACCAACACGCTGTAGCTTTTCCTaGGCTTGGTTATACTTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: QTKCQRYFNTSLLQVRPTRCSFS*AWLYFS Trigger: AGAAAAGTATAACCAAGCCAAGGAAAAGCTACAGCG...TGTTGGTCTTACTTGAAGCAGTGAGGTATTGAAGTACCGCTGACATTTAGTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CAA 90 bp | GGCATCTCAAAGATGAGGAAAAGGGACTTCAGGGTGGATATATTTCAAGCAAAAGACTTGAGAATTTCATaGTCTGACTGCAATCCATCA | + |
|
Preference number: 5 (lower is better) Translates to: GISKMRKRDFRVDIFQAKDLRIS*SDCNPS Trigger: TGATGGATTGCAGTCAGACAATGAAATTCTCAAGTC...TTTTGCTTGAAATATATCCACCCTGAAGTCCCTTTTCCTCATCTTTGAGATGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CAA 90 bp | CCACATAAATTTAAGCTTCCGTTTGCTGACATGAAATTATTCCAGTGGAATCCCCGTGCAACCTCTGACTaGTATTTCATTTTCTCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: PHKFKLPFADMKLFQWNPRATSD*YFIFSS Trigger: AGAAGAGAAAATGAAATACAAGTCAGAGGTTGCACG...GGGATTCCACTGGAATAATTTCATGTCAGCAAACGGAAGCTTAAATTTATGTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CAA 90 bp | TCACTGCTTCAAGTAAGACCAACAACTCTTTACAGCCACAGGACTTCATTTTCTTCCATCAAGTTCACTTaGGATCTTATTCCTTTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: SLLQVRPTTLYSHRTSFSSIKFT*DLIPFS Trigger: AGAGAAAGGAATAAGATCCAAAGTGAACTTGATGGA...AGAAAATGAAGTCCTGTGGCTGTAAAGAGTTGTTGGTCTTACTTGAAGCAGTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS-3UTR CAA 90 bp | TCACTGCTTCAAGTAAGACCAACAACTCTTTACAGCCACAGGACTTCATTTTCTCTGCAAATGACTGATTaGCTGTTTCAGTTCAGAATT | + |
|
Preference number: 5 (lower is better) Translates to: SLLQVRPTTLYSHRTSFSLQMTD*LFQFRI Trigger: AATTCTGAACTGAAACAGCAAATCAGTCATTTGCAG...AGAAAATGAAGTCCTGTGGCTGTAAAGAGTTGTTGGTCTTACTTGAAGCAGTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS GCA 72 bp | CCTAGTGCTCTGCAGCTCCCTGCGGGCTGCCTCCTCTaGCATCTGGGAGGCCCGCAGCTTCTCCTCACACTG | + |
|
Preference number: 6 (lower is better) Translates to: PSALQLPAGCLL*HLGGPQLLLTL Trigger: CAGTGTGAGGAGAAGCTGCGGGCCTCCCAGATGGCAGAGGAGGCAGCCCGCAGGGAGCTGCAGAGCACTAGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS GCA 72 bp | TCTGCCATCTGGGAGGCCCGCAGCTTCTCCTCACACTaGTCCTTTTCCGACTGCCTCCAGACATCACGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: SAIWEARSFSSH*SFSDCLQTSRS Trigger: GGAGCGTGATGTCTGGAGGCAGTCGGAAAAGGAGCAGTGTGAGGAGAAGCTGCGGGCCTCCCAGATGGCAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS GCA 72 bp | GCCCGCAGCTTCTCCTCACACTGCTCCTTTTCCGACTaGCTCCAGACATCACGCTCCACCTTCATCTTCTCT | + |
|
Preference number: 6 (lower is better) Translates to: ARSFSSHCSFSD*LQTSRSTFIFS Trigger: AGAGAAGATGAAGGTGGAGCGTGATGTCTGGAGGCAGTCGGAAAAGGAGCAGTGTGAGGAGAAGCTGCGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS GCA 72 bp | AGGGGGAAAAGAGAGTTCCGCTCCAGGAACTGTCACTaGGGACTGGAAGTTAGCAGGACTAATCGATGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: RGKREFRSRNCH*GLEVSRTNRCC Trigger: ACAGCATCGATTAGTCCTGCTAACTTCCAGTCCGCAGTGACAGTTCCTGGAGCGGAACTCTCTTTTCCCCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS CCA 72 bp | AAAGAGAGTTCCGCTCCAGGAACTGTCACTGCGGACTaGAAGTTAGCAGGACTAATCGATGCTGTTGGAGGC | + |
|
Preference number: 6 (lower is better) Translates to: KESSAPGTVTAD*KLAGLIDAVGG Trigger: GCCTCCAACAGCATCGATTAGTCCTGCTAACTTCCAGTCCGCAGTGACAGTTCCTGGAGCGGAACTCTCTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS CAA 90 bp | GGCATTCTTGTTTTAGTCTCTCCACCATGTCCTTCAGCATGTGGTTaGAATTCAGTAAGTCGTTCTCCGACTGTGTCAGTGAGGTCACTT | + |
|
Preference number: 6 (lower is better) Translates to: GILVLVSPPCPSACG*NSVSRSPTVSVRSL Trigger: AAGTGACCTCACTGACACAGTCGGAGAACGACTTACTGAATTCAAACCACATGCTGAAGGACATGGTGGAGAGACTAAAACAAGAATGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS GCA 72 bp | TCACTGGCCAGTGTGCTGATTTCTCGGTCAGCTCTATaGAGTTTGCTGATTAAGCAGGTATTCTGTTCATTG | + |
|
Preference number: 6 (lower is better) Translates to: SLASVLISRSAL*SLLIKQVFCSL Trigger: CAATGAACAGAATACCTGCTTAATCAGCAAACTGCATAGAGCTGACCGAGAAATCAGCACACTGGCCAGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS CAA 72 bp | GTTTTAGTCTCTCCACCATGTCCTTCAGCATGTGGTTaGAATTCAGTAAGTCGTTCTCCGACTGTGTCAGTG | + |
|
Preference number: 6 (lower is better) Translates to: VLVSPPCPSACG*NSVSRSPTVSV Trigger: CACTGACACAGTCGGAGAACGACTTACTGAATTCAAACCACATGCTGAAGGACATGGTGGAGAGACTAAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS CCA 72 bp | TCTTGTTTTAGTCTCTCCACCATGTCCTTCAGCATGTaGTTTGAATTCAGTAAGTCGTTCTCCGACTGTGTC | + |
|
Preference number: 6 (lower is better) Translates to: SCFSLSTMSFSM*FEFSKSFSDCV Trigger: GACACAGTCGGAGAACGACTTACTGAATTCAAACCACATGCTGAAGGACATGGTGGAGAGACTAAAACAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS CAA 72 bp | GCCAGTGTGCTGATTTCTCGGTCAGCTCTATGCAGTTaGCTGATTAAGCAGGTATTCTGTTCATTGCTTGAT | + |
|
Preference number: 6 (lower is better) Translates to: ASVLISRSALCS*LIKQVFCSLLD Trigger: ATCAAGCAATGAACAGAATACCTGCTTAATCAGCAAACTGCATAGAGCTGACCGAGAAATCAGCACACTGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS CAA 90 bp | ACTTCACTGGCCAGTGTGCTGATTTCTCGGTCAGCTCTATGCAGTTaGCTGATTAAGCAGGTATTCTGTTCATTGCTTGATTGTAGTTCT | + |
|
Preference number: 6 (lower is better) Translates to: TSLASVLISRSALCS*LIKQVFCSLLDCSS Trigger: AGAACTACAATCAAGCAATGAACAGAATACCTGCTTAATCAGCAAACTGCATAGAGCTGACCGAGAAATCAGCACACTGGCCAGTGAAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||
| CDS CAA 90 bp | CGGTCAGCTCTATGCAGTTTGCTGATTAAGCAGGTATTCTGTTCATaGCTTGATTGTAGTTCTTTTTCTAAACGCTCAGCTTGTAGTTTA | + |
|
Preference number: 6 (lower is better) Translates to: RSALCSLLIKQVFCS*LDCSSFSKRSACSL Trigger: TAAACTACAAGCTGAGCGTTTAGAAAAAGAACTACAATCAAGCAATGAACAGAATACCTGCTTAATCAGCAAACTGCATAGAGCTGACCG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020212.6 |
||