RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CEP44 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038215

Ensembl transcript IDs: ENSMUST00000040330.15, ENSMUST00000123493.8, ENSMUST00000130930.2, ENSMUST00000134162.8, ENSMUST00000135337.8, ENSMUST00000140107.8

Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp AGAATATATATAAGTAGCCAAAGTCCTAGGAGCGATTATGCAGAACATTCTACACTTGCAGCTCAGCCTTaGCCTCAGGGTCCTGGGCCT +
Preference number: 4 (lower is better)
Translates to: RIYISSQSPRSDYAEHSTLAAQP*PQGPGP
Trigger: AGGCCCAGGACCCTGAGGTCAAGGCTGAGCTGCAAG...TGTAGAATGTTCTGCATAATCGCTCCTAGGACTTTGGCTACTTATATATATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS-3UTR TCA 90 bp AGAATATATATAAGTAGCCAAAGTCCTAGGAGCGATTATGCAGAACATTCTACAAGAACTCTGCTCTGCTaGCTCACTGCAGCCTTGACT +
Preference number: 4 (lower is better)
Translates to: RIYISSQSPRSDYAEHSTRTLLC*LTAALT
Trigger: AGTCAAGGCTGCAGTGAGTCAGCAGAGCAGAGTTCT...TGTAGAATGTTCTGCATAATCGCTCCTAGGACTTTGGCTACTTATATATATTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS-3UTR TCA 90 bp AGAATATATATAAGTAGCCAAAGTCCTAGGAGCGATTATGCAGAACATTCTACAGACTCACTGCAGCCTTaGCTGATGTCTGCTAAGGTT +
Preference number: 4 (lower is better)
Translates to: RIYISSQSPRSDYAEHSTDSLQP*LMSAKV
Trigger: AACCTTAGCAGACATCAGTCAAGGCTGCAGTGAGTC...TGTAGAATGTTCTGCATAATCGCTCCTAGGACTTTGGCTACTTATATATATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS-3UTR GCA 90 bp AGAATATATATAAGTAGCCAAAGTCCTAGGAGCGATTATGCAGAACATTCTACACGAATGTCAGAACTCTaGTCTGCTGACTCACTGCAG +
Preference number: 4 (lower is better)
Translates to: RIYISSQSPRSDYAEHSTRMSEL*SADSLQ
Trigger: CTGCAGTGAGTCAGCAGAGCAGAGTTCTGACATTCG...TGTAGAATGTTCTGCATAATCGCTCCTAGGACTTTGGCTACTTATATATATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS-3UTR GCA 90 bp AGAATATATATAAGTAGCCAAAGTCCTAGGAGCGATTATGCAGAACATTCTACAGATGATGGGCAAGGATaGTGCTGTGTCTCCCTTTAT +
Preference number: 4 (lower is better)
Translates to: RIYISSQSPRSDYAEHSTDDGQG*CCVSLY
Trigger: ATAAAGGGAGACACAGCAGCATCCTTGCCCATCATC...TGTAGAATGTTCTGCATAATCGCTCCTAGGACTTTGGCTACTTATATATATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040330.15
CDS-3UTR TCA 90 bp AGAATATATATAAGTAGCCAAAGTCCTAGGAGCGATTATGCAGAACATTCTACAGTCCACATCACTAATTaGCTCACAGTCTTGACTTGC +
Preference number: 4 (lower is better)
Translates to: RIYISSQSPRSDYAEHSTVHITN*LTVLTC
Trigger: GCAAGTCAAGACTGTGAGTCAATTAGTGATGTGGAC...TGTAGAATGTTCTGCATAATCGCTCCTAGGACTTTGGCTACTTATATATATTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS-3UTR TCA 90 bp AGAATATATATAAGTAGCCAAAGTCCTAGGAGCGATTATGCAGAACATTCTACAGATAGTTGTTTCCTCTaGGAACTCTCTCAAGACACA +
Preference number: 4 (lower is better)
Translates to: RIYISSQSPRSDYAEHSTDSCFL*ELSQDT
Trigger: TGTGTCTTGAGAGAGTTCTCAGAGGAAACAACTATC...TGTAGAATGTTCTGCATAATCGCTCCTAGGACTTTGGCTACTTATATATATTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS-3UTR GCA 90 bp AGAATATATATAAGTAGCCAAAGTCCTAGGAGCGATTATGCAGAACATTCTACATCTTATAGAGGCAGATaGATAGGGTACAAAGTCCAC +
Preference number: 4 (lower is better)
Translates to: RIYISSQSPRSDYAEHSTSYRGR*IGYKVH
Trigger: GTGGACTTTGTACCCTATGCATCTGCCTCTATAAGA...TGTAGAATGTTCTGCATAATCGCTCCTAGGACTTTGGCTACTTATATATATTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123493.8
CDS TCA 90 bp GGAATCCGAATGTCAGAACTCTGCTCTGCTGACTCACTGCAGCCTTaGCTGATGTCTGCTAAGGTTACTGTCCCTTCAGGAACGCCAACC +
Preference number: 5 (lower is better)
Translates to: GIRMSELCSADSLQP*LMSAKVTVPSGTPT
Trigger: GGTTGGCGTTCCTGAAGGGACAGTAACCTTAGCAGACATCAGTCAAGGCTGCAGTGAGTCAGCAGAGCAGAGTTCTGACATTCGGATTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS GCA 90 bp AAGGTTGTTCCAGGCCTTCTCGTCGACCATCACTTTCCCGTGTGTTaGAGCTTCCAAACGCTCAAGCCGTTTCTCTATCCAAGTCAGCTG +
Preference number: 5 (lower is better)
Translates to: KVVPGLLVDHHFPVC*SFQTLKPFLYPSQL
Trigger: CAGCTGACTTGGATAGAGAAACGGCTTGAGCGTTTGGAAGCTGCAACACACGGGAAAGTGATGGTCGACGAGAAGGCCTGGAACAACCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS CCA 90 bp GTTACTGTCCCTTCAGGAACGCCAACCTTCTCGTCAGTGTACAGGTaGCGGATCACCACAGCTTTCTTCTTTCCCGACGTCATAAACCTG +
Preference number: 5 (lower is better)
Translates to: VTVPSGTPTFSSVYR*RITTAFFFPDVINL
Trigger: CAGGTTTATGACGTCGGGAAAGAAGAAAGCTGTGGTGATCCGCCACCTGTACACTGACGAGAAGGTTGGCGTTCCTGAAGGGACAGTAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS TCA 90 bp TCCGAATGTCAGAACTCTGCTCTGCTGACTCACTGCAGCCTTGACTaGTGTCTGCTAAGGTTACTGTCCCTTCAGGAACGCCAACCTTCT +
Preference number: 5 (lower is better)
Translates to: SECQNSALLTHCSLD*CLLRLLSLQERQPS
Trigger: AGAAGGTTGGCGTTCCTGAAGGGACAGTAACCTTAGCAGACATCAGTCAAGGCTGCAGTGAGTCAGCAGAGCAGAGTTCTGACATTCGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS CCA 90 bp ATGCTGCTGTGTCTCCCTTTATCAGGCCGACATAATCCACCTCATTaGGGTAATTCAGTGACCGAAGCACTTGTTCTAGCTTCCGCAAGC +
Preference number: 5 (lower is better)
Translates to: MLLCLPLSGRHNPPH*GNSVTEALVLASAS
Trigger: GCTTGCGGAAGCTAGAACAAGTGCTTCGGTCACTGAATTACCCCAATGAGGTGGATTATGTCGGCCTGATAAAGGGAGACACAGCAGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000040330.15
ENSMUST00000130930.2
ENSMUST00000134162.8
ENSMUST00000135337.8
ENSMUST00000140107.8
CDS TCA 90 bp CGTGATGTCAATGCCAACAGCCTCTGCAGGGCGTTTCTCACTGTTTaGACAAGGTTCTGGCTTCTCAGAAACATTCTTCTTCCTTTGGCA +
Preference number: 5 (lower is better)
Translates to: RDVNANSLCRAFLTV*TRFWLLRNILLPLA
Trigger: TGCCAAAGGAAGAAGAATGTTTCTGAGAAGCCAGAACCTTGTTCAAACAGTGAGAAACGCCCTGCAGAGGCTGTTGGCATTGACATCACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
ENSMUST00000140107.8
CDS GCA 90 bp CTCTATCCAAGTCAGCTGCTTCAGCTTTTCCTGACATTCGGCCAGTaGGATCTGAAGTGCGGTAATCTCAGGATGATCACATATATCTTG +
Preference number: 5 (lower is better)
Translates to: LYPSQLLQLFLTFGQ*DLKCGNLRMITYIL
Trigger: CAAGATATATGTGATCATCCTGAGATTACCGCACTTCAGATCGCACTGGCCGAATGTCAGGAAAAGCTGAAGCAGCTGACTTGGATAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS-3UTR CAA 90 bp AGAATATATATAAGTAGCCAAAGTCCTAGGAGCGATTATGCAGAACATTCTACATCTTGCAGCTCAGCCTaGACCTCAGGGTCCTGGGCC +
Preference number: 5 (lower is better)
Translates to: RIYISSQSPRSDYAEHSTSCSSA*TSGSWA
Trigger: GGCCCAGGACCCTGAGGTCAAGGCTGAGCTGCAAGA...TGTAGAATGTTCTGCATAATCGCTCCTAGGACTTTGGCTACTTATATATATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS TCA 90 bp TCTTATAGAGGCAGATGCATAGGGTACAAAGTCCACATCACTAATTaGCTCACAGTCTTGACTTGCCACATTACGCTCTACAGATTCACT +
Preference number: 5 (lower is better)
Translates to: SYRGRCIGYKVHITN*LTVLTCHITLYRFT
Trigger: AGTGAATCTGTAGAGCGTAATGTGGCAAGTCAAGACTGTGAGTCAATTAGTGATGTGGACTTTGTACCCTATGCATCTGCCTCTATAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123493.8
CDS-3UTR CAA 90 bp AGAATATATATAAGTAGCCAAAGTCCTAGGAGCGATTATGCAGAACATTCTACAACACGACTTAGAAGGTaGTTCCAGGCCTTCTCGTCG +
Preference number: 5 (lower is better)
Translates to: RIYISSQSPRSDYAEHSTTRLRR*FQAFSS
Trigger: CGACGAGAAGGCCTGGAACAACCTTCTAAGTCGTGT...TGTAGAATGTTCTGCATAATCGCTCCTAGGACTTTGGCTACTTATATATATTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS TCA 90 bp CACACTGTAGTTTTTATCATAGGGTACAAAGTCCACATCACTAATTaGCTCACAGTCTTGACTTGCCACATTACGCTCTACAGATTCACT +
Preference number: 5 (lower is better)
Translates to: HTVVFIIGYKVHITN*LTVLTCHITLYRFT
Trigger: AGTGAATCTGTAGAGCGTAATGTGGCAAGTCAAGACTGTGAGTCAATTAGTGATGTGGACTTTGTACCCTATGATAAAAACTACAGTGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040330.15
CDS-3UTR CAA 90 bp AGAATATATATAAGTAGCCAAAGTCCTAGGAGCGATTATGCAGAACATTCTACAGGCGTTTCTCACTGTTaGAACAAGGTTCTGGCTTCT +
Preference number: 5 (lower is better)
Translates to: RIYISSQSPRSDYAEHSTGVSHC*NKVLAS
Trigger: AGAAGCCAGAACCTTGTTCAAACAGTGAGAAACGCC...TGTAGAATGTTCTGCATAATCGCTCCTAGGACTTTGGCTACTTATATATATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS-3UTR CAA 90 bp AGAATATATATAAGTAGCCAAAGTCCTAGGAGCGATTATGCAGAACATTCTACAATGATCACATATATCTaGCAGCTCAGCCTTGACCTC +
Preference number: 5 (lower is better)
Translates to: RIYISSQSPRSDYAEHSTMITYI*QLSLDL
Trigger: GAGGTCAAGGCTGAGCTGCAAGATATATGTGATCAT...TGTAGAATGTTCTGCATAATCGCTCCTAGGACTTTGGCTACTTATATATATTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS-3UTR CAA 90 bp AGAATATATATAAGTAGCCAAAGTCCTAGGAGCGATTATGCAGAACATTCTACATGGCATGATGAATTCTaGTCAAGGCCAATCAATTCC +
Preference number: 5 (lower is better)
Translates to: RIYISSQSPRSDYAEHSTWHDEF*SRPINS
Trigger: GGAATTGATTGGCCTTGACAAGAATTCATCATGCCA...TGTAGAATGTTCTGCATAATCGCTCCTAGGACTTTGGCTACTTATATATATTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS-3UTR CAA 90 bp AGAATATATATAAGTAGCCAAAGTCCTAGGAGCGATTATGCAGAACATTCTACAACAGATTCACTCTTTTaGGACAACAGCATCTCCGTT +
Preference number: 5 (lower is better)
Translates to: RIYISSQSPRSDYAEHSTTDSLF*DNSISV
Trigger: AACGGAGATGCTGTTGTCCAAAAAGAGTGAATCTGT...TGTAGAATGTTCTGCATAATCGCTCCTAGGACTTTGGCTACTTATATATATTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS CCA 72 bp CCTTCAGGAACGCCAACCTTCTCGTCAGTGTACAGGTaGCGGATCACCACAGCTTTCTTCTTTCCCGACGTC +
Preference number: 6 (lower is better)
Translates to: PSGTPTFSSVYR*RITTAFFFPDV
Trigger: GACGTCGGGAAAGAAGAAAGCTGTGGTGATCCGCCACCTGTACACTGACGAGAAGGTTGGCGTTCCTGAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS GCA 72 bp CCAGGCCTTCTCGTCGACCATCACTTTCCCGTGTGTTaGAGCTTCCAAACGCTCAAGCCGTTTCTCTATCCA +
Preference number: 6 (lower is better)
Translates to: PGLLVDHHFPVC*SFQTLKPFLYP
Trigger: TGGATAGAGAAACGGCTTGAGCGTTTGGAAGCTGCAACACACGGGAAAGTGATGGTCGACGAGAAGGCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS CAA 90 bp CAGTGCGATCTGAAGTGCGGTAATCTCAGGATGATCACATATATCTaGCAGCTCAGCCTTGACCTCAGGGTCCTGGGCCTCAGGAATCCG +
Preference number: 6 (lower is better)
Translates to: QCDLKCGNLRMITYI*QLSLDLRVLGLRNP
Trigger: CGGATTCCTGAGGCCCAGGACCCTGAGGTCAAGGCTGAGCTGCAAGATATATGTGATCATCCTGAGATTACCGCACTTCAGATCGCACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS TCA 72 bp CAGAACTCTGCTCTGCTGACTCACTGCAGCCTTGACTaGTGTCTGCTAAGGTTACTGTCCCTTCAGGAACGC +
Preference number: 6 (lower is better)
Translates to: QNSALLTHCSLD*CLLRLLSLQER
Trigger: GCGTTCCTGAAGGGACAGTAACCTTAGCAGACATCAGTCAAGGCTGCAGTGAGTCAGCAGAGCAGAGTTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS CAA 90 bp GAAGGTTGTTCCAGGCCTTCTCGTCGACCATCACTTTCCCGTGTGTaGCAGCTTCCAAACGCTCAAGCCGTTTCTCTATCCAAGTCAGCT +
Preference number: 6 (lower is better)
Translates to: EGCSRPSRRPSLSRV*QLPNAQAVSLSKSA
Trigger: AGCTGACTTGGATAGAGAAACGGCTTGAGCGTTTGGAAGCTGCAACACACGGGAAAGTGATGGTCGACGAGAAGGCCTGGAACAACCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS TCA 72 bp TCTCAGGATGATCACATATATCTTGCAGCTCAGCCTTaGCCTCAGGGTCCTGGGCCTCAGGAATCCGAATGT +
Preference number: 6 (lower is better)
Translates to: SQDDHIYLAAQP*PQGPGPQESEC
Trigger: ACATTCGGATTCCTGAGGCCCAGGACCCTGAGGTCAAGGCTGAGCTGCAAGATATATGTGATCATCCTGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS CAA 90 bp GACAACAGCATCTCCGTTTCTAGAAGAGTGACACGACTTAGAAGGTaGTTCCAGGCCTTCTCGTCGACCATCACTTTCCCGTGTGTTGCA +
Preference number: 6 (lower is better)
Translates to: DNSISVSRRVTRLRR*FQAFSSTITFPCVA
Trigger: TGCAACACACGGGAAAGTGATGGTCGACGAGAAGGCCTGGAACAACCTTCTAAGTCGTGTCACTCTTCTAGAAACGGAGATGCTGTTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS GCA 72 bp AGTCAGCTGCTTCAGCTTTTCCTGACATTCGGCCAGTaGGATCTGAAGTGCGGTAATCTCAGGATGATCACA +
Preference number: 6 (lower is better)
Translates to: SQLLQLFLTFGQ*DLKCGNLRMIT
Trigger: TGTGATCATCCTGAGATTACCGCACTTCAGATCGCACTGGCCGAATGTCAGGAAAAGCTGAAGCAGCTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS CAA 72 bp ATCTCCGTTTCTAGAAGAGTGACACGACTTAGAAGGTaGTTCCAGGCCTTCTCGTCGACCATCACTTTCCCG +
Preference number: 6 (lower is better)
Translates to: ISVSRRVTRLRR*FQAFSSTITFP
Trigger: CGGGAAAGTGATGGTCGACGAGAAGGCCTGGAACAACCTTCTAAGTCGTGTCACTCTTCTAGAAACGGAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040330.15
ENSMUST00000123493.8
CDS TCA 72 bp GGCAGATGCATAGGGTACAAAGTCCACATCACTAATTaGCTCACAGTCTTGACTTGCCACATTACGCTCTAC +
Preference number: 6 (lower is better)
Translates to: GRCIGYKVHITN*LTVLTCHITLY
Trigger: GTAGAGCGTAATGTGGCAAGTCAAGACTGTGAGTCAATTAGTGATGTGGACTTTGTACCCTATGCATCTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123493.8
CDS TCA 72 bp GTTTTTATCATAGGGTACAAAGTCCACATCACTAATTaGCTCACAGTCTTGACTTGCCACATTACGCTCTAC +
Preference number: 6 (lower is better)
Translates to: VFIIGYKVHITN*LTVLTCHITLY
Trigger: GTAGAGCGTAATGTGGCAAGTCAAGACTGTGAGTCAATTAGTGATGTGGACTTTGTACCCTATGATAAAAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040330.15