Pregenerated sensors for CEP20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022677Ensembl transcript IDs: ENSMUST00000023357.14, ENSMUST00000120707.2
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGAGGCCACAGAGGAGTGCTACTTAGTGGCTTGCTCCCCATGGCTTaGTCAGTCTTTCTTACTGAACCCAGGATCACCTGCCCAGGGGTG | + |
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Preference number: 1 (lower is better) Translates to: RGHRGVLLSGLLPMA*SVFLTEPRITCPGV Trigger: CACCCCTGGGCAGGTGATCCTGGGTTCAGTAAGAAAGACTGAGCAAGCCATGGGGAGCAAGCCACTAAGTAGCACTCCTCTGTGGCCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR TCA 90 bp | CTTGCTCAGTCTTTCTTACTGAACCCAGGATCACCTGCCCAGGGGTaGCACCACCCACTGTGGGCTGGACCCTCCCATATCAATCATGAA | + |
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Preference number: 1 (lower is better) Translates to: LAQSFLLNPGSPAQG*HHPLWAGPSHINHE Trigger: TTCATGATTGATATGGGAGGGTCCAGCCCACAGTGGGTGGTGTCACCCCTGGGCAGGTGATCCTGGGTTCAGTAAGAAAGACTGAGCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR CCA 90 bp | AATGCAGAGGCCACAGAGGAGTGCTACTTAGTGGCTTGCTCCCCATaGCTTGCTCAGTCTTTCTTACTGAACCCAGGATCACCTGCCCAG | + |
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Preference number: 1 (lower is better) Translates to: NAEATEECYLVACSP*LAQSFLLNPGSPAQ Trigger: CTGGGCAGGTGATCCTGGGTTCAGTAAGAAAGACTGAGCAAGCCATGGGGAGCAAGCCACTAAGTAGCACTCCTCTGTGGCCTCTGCATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR GCA 90 bp | GCAGAAGTTAATGCAGAGGCCACAGAGGAGTGCTACTTAGTGGCTTaGTCCCCATGGCTTGCTCAGTCTTTCTTACTGAACCCAGGATCA | + |
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Preference number: 1 (lower is better) Translates to: AEVNAEATEECYLVA*SPWLAQSFLLNPGS Trigger: TGATCCTGGGTTCAGTAAGAAAGACTGAGCAAGCCATGGGGAGCAAGCCACTAAGTAGCACTCCTCTGTGGCCTCTGCATTAACTTCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR GCA 90 bp | TTCTTGTGCTTTCTTTCTTCAGTGCTAGGACTGAACCCAGGACCTTaGATAGGGAGGGAAGTGCTTTACCAGCAGCATAGCAACAGCCCT | + |
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Preference number: 1 (lower is better) Translates to: FLCFLSSVLGLNPGP*IGREVLYQQHSNSP Trigger: AGGGCTGTTGCTATGCTGCTGGTAAAGCACTTCCCTCCCTATGCAAGGTCCTGGGTTCAGTCCTAGCACTGAAGAAAGAAAGCACAAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR GCA 90 bp | CTGAGAGAAATCACGGCAGAAGTTAATGCAGAGGCCACAGAGGAGTaGTACTTAGTGGCTTGCTCCCCATGGCTTGCTCAGTCTTTCTTA | + |
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Preference number: 1 (lower is better) Translates to: LREITAEVNAEATEE*YLVACSPWLAQSFL Trigger: TAAGAAAGACTGAGCAAGCCATGGGGAGCAAGCCACTAAGTAGCACTCCTCTGTGGCCTCTGCATTAACTTCTGCCGTGATTTCTCTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR TCA 90 bp | AAGAAGGTTTATTTCAGCTTACAGTTCAACATCACAGTTTGTCACTaGGAGAAATCACGGCAGAAGTTAATGCAGAGGCCACAGAGGAGT | + |
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Preference number: 1 (lower is better) Translates to: KKVYFSLQFNITVCH*EKSRQKLMQRPQRS Trigger: ACTCCTCTGTGGCCTCTGCATTAACTTCTGCCGTGATTTCTCTCAGTGACAAACTGTGATGTTGAACTGTAAGCTGAAATAAACCTTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR-3UTR CCA 90 bp | CTTACTGAACCCAGGATCACCTGCCCAGGGGTGACACCACCCACTGTGGGCTGGGAAGCTCTTCAGTTGTaGTTCTTGGCCCTGTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: LTEPRITCPGVTPPTVGWEALQL*FLALCP Trigger: AGGACACAGGGCCAAGAACCACAACTGAAGAGCTTC...CCAGCCCACAGTGGGTGGTGTCACCCCTGGGCAGGTGATCCTGGGTTCAGTAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120707.2 |
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| 3UTR-3UTR GCA 90 bp | GGTGACACCACCCACTGTGGGCTGGACCCTCCCATATCAATCATGAATCAAGAAGAACCCAGGATCACCTaGCCAGGGGTGACACCACCC | + |
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Preference number: 2 (lower is better) Translates to: GDTTHCGLDPPISIMNQEEPRIT*PGVTPP Trigger: GGGTGGTGTCACCCCTGGGCAGGTGATCCTGGGTTC...TTCTTGATTCATGATTGATATGGGAGGGTCCAGCCCACAGTGGGTGGTGTCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR-3UTR GCA 90 bp | GCTTGCTCCCCATGGCTTGCTCAGTCTTTCTTACTGAACCCAGGATCACCTGCCTGCTACTTAGTGGCTTaGTCCCCATGGCTTGCTCAG | + |
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Preference number: 2 (lower is better) Translates to: ACSPWLAQSFLLNPGSPACYLVA*SPWLAQ Trigger: CTGAGCAAGCCATGGGGAGCAAGCCACTAAGTAGCA...GGCAGGTGATCCTGGGTTCAGTAAGAAAGACTGAGCAAGCCATGGGGAGCAAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR-3UTR TCA 90 bp | GGAGTGCTACTTAGTGGCTTGCTCCCCATGGCTTGCTCAGTCTTTCTTACTGAAAGATGCAGTAAACCATaGGTGGCTGAATGCAGACAC | + |
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Preference number: 2 (lower is better) Translates to: GVLLSGLLPMACSVFLTERCSKP*VAECRH Trigger: GTGTCTGCATTCAGCCACTCATGGTTTACTGCATCT...TTCAGTAAGAAAGACTGAGCAAGCCATGGGGAGCAAGCCACTAAGTAGCACTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR-3UTR GCA 90 bp | CTGTTCTTGTGCTTTCTTTCTTCAGTGCTAGGACTGAACCCAGGACCTTGCATATCTGCTGACTGCTTGTaGAGCAGCAGGAAGCTCTTC | + |
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Preference number: 2 (lower is better) Translates to: LFLCFLSSVLGLNPGPCISADCL*SSRKLF Trigger: GAAGAGCTTCCTGCTGCTGCACAAGCAGTCAGCAGA...TATGCAAGGTCCTGGGTTCAGTCCTAGCACTGAAGAAAGAAAGCACAAGAACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120707.2 |
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| 3UTR-3UTR CCA 90 bp | CTTTCTTTCTTCAGTGCTAGGACTGAACCCAGGACCTTGCATAGGGAGGGAAGTATAAATTTTCCCCAGTaGCATCCAGCAAGCGAGACG | + |
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Preference number: 2 (lower is better) Translates to: LSFFSARTEPRTLHREGSINFPQ*HPASET Trigger: CGTCTCGCTTGCTGGATGCCACTGGGGAAAATTTAT...ACTTCCCTCCCTATGCAAGGTCCTGGGTTCAGTCCTAGCACTGAAGAAAGAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR-3UTR TCA 90 bp | GCAGTAAACCATGAGTGGCTGAATGCAGACACTCAAACATTTACAAGCAGTGGTTACTCCACACACAGCTaGGGTGATGAGCCTGGTGTA | + |
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Preference number: 2 (lower is better) Translates to: AVNHEWLNADTQTFTSSGYSTHS*GDEPGV Trigger: TACACCAGGCTCATCACCTCAGCTGTGTGTGGAGTA...ACCACTGCTTGTAAATGTTTGAGTGTCTGCATTCAGCCACTCATGGTTTACTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR-3UTR TCA 90 bp | GAGTCCCTCTCCCCAAATGACTCTAGCTTGTATCAAGTTGATATAAAACTAGCCCATCGCATCATCTGCTaGCTGCTTGTGCAGCAGCAG | + |
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Preference number: 2 (lower is better) Translates to: ESLSPNDSSLYQVDIKLAHRIIC*LLVQQQ Trigger: CTGCTGCTGCACAAGCAGTCAGCAGATGATGCGATG...GGCTAGTTTTATATCAACTTGATACAAGCTAGAGTCATTTGGGGAGAGGGACTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120707.2 |
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| 3UTR-3UTR TCA 90 bp | AGTTTGTCACTGAGAGAAATCACGGCAGAAGTTAATGCAGAGGCCACAGAGGAGGCCCATAAGCCAATCTaGTGGAGGGATTTTCTCAAT | + |
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Preference number: 2 (lower is better) Translates to: SLSLREITAEVNAEATEEAHKPI*WRDFLN Trigger: ATTGAGAAAATCCCTCCATCAGATTGGCTTATGGGC...CTCCTCTGTGGCCTCTGCATTAACTTCTGCCGTGATTTCTCTCAGTGACAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR-3UTR CCA 90 bp | GAAATCACGGCAGAAGTTAATGCAGAGGCCACAGAGGAGTGCTACTTAGTGGCTAATGAGCAGAGCACATaGACAAAGACCTGTTCTTGT | + |
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Preference number: 2 (lower is better) Translates to: EITAEVNAEATEECYLVANEQST*TKTCSC Trigger: ACAAGAACAGGTCTTTGTCCATGTGCTCTGCTCATT...AGCCACTAAGTAGCACTCCTCTGTGGCCTCTGCATTAACTTCTGCCGTGATTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR-3UTR CCA 90 bp | GGAGTGCTACTTAGTGGCTTGCTCCCCATGGCTTGCTCAGTCTTTCTTACTGAAAATGAGCAGAGCACATaGACAAAGACCTGTTCTTGT | + |
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Preference number: 2 (lower is better) Translates to: GVLLSGLLPMACSVFLTENEQST*TKTCSC Trigger: ACAAGAACAGGTCTTTGTCCATGTGCTCTGCTCATT...TTCAGTAAGAAAGACTGAGCAAGCCATGGGGAGCAAGCCACTAAGTAGCACTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR-3UTR GCA 90 bp | CTTTCTTTCTTCAGTGCTAGGACTGAACCCAGGACCTTGCATAGGGAGGGAAGTAAAGACCTGTTCTTGTaGTTTCTTTCTTCAGTGCTA | + |
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Preference number: 2 (lower is better) Translates to: LSFFSARTEPRTLHREGSKDLFL*FLSSVL Trigger: TAGCACTGAAGAAAGAAAGCACAAGAACAGGTCTTT...ACTTCCCTCCCTATGCAAGGTCCTGGGTTCAGTCCTAGCACTGAAGAAAGAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR-3UTR TCA 90 bp | AATTCAGAGTCCCTCTCCCCAAATGACTCTAGCTTGTATCAAGTTGATATAAAATACTCCACACACAGCTaGGGTGATGAGCCTGGTGTA | + |
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Preference number: 2 (lower is better) Translates to: NSESLSPNDSSLYQVDIKYSTHS*GDEPGV Trigger: TACACCAGGCTCATCACCTCAGCTGTGTGTGGAGTA...TTTTATATCAACTTGATACAAGCTAGAGTCATTTGGGGAGAGGGACTCTGAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR-3UTR GCA 90 bp | CTCAATTCAGAGTCCCTCTCCCCAAATGACTCTAGCTTGTATCAAGTTGATATAAAAGACCTGTTCTTGTaGTTTCTTTCTTCAGTGCTA | + |
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Preference number: 2 (lower is better) Translates to: LNSESLSPNDSSLYQVDIKDLFL*FLSSVL Trigger: TAGCACTGAAGAAAGAAAGCACAAGAACAGGTCTTT...TATATCAACTTGATACAAGCTAGAGTCATTTGGGGAGAGGGACTCTGAATTGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR TCA 72 bp | TCTTTCTTACTGAACCCAGGATCACCTGCCCAGGGGTaGCACCACCCACTGTGGGCTGGACCCTCCCATATC | + |
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Preference number: 3 (lower is better) Translates to: SFLLNPGSPAQG*HHPLWAGPSHI Trigger: GATATGGGAGGGTCCAGCCCACAGTGGGTGGTGTCACCCCTGGGCAGGTGATCCTGGGTTCAGTAAGAAAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR TCA 72 bp | TGGCTTGCTCCCCATGGCTTGCTCAGTCTTTCTTACTaGACCCAGGATCACCTGCCCAGGGGTGACACCACC | + |
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Preference number: 3 (lower is better) Translates to: WLAPHGLLSLSY*TQDHLPRGDTT Trigger: GGTGGTGTCACCCCTGGGCAGGTGATCCTGGGTTCAGTAAGAAAGACTGAGCAAGCCATGGGGAGCAAGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR-3UTR CAA 90 bp | GTCTTTCTTACTGAACCCAGGATCACCTGCCCAGGGGTGACACCACCCACTGTGCTTCAGTTGTGGTTCTaGGCCCTGTGTCCTTCCTCA | + |
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Preference number: 3 (lower is better) Translates to: VFLTEPRITCPGVTPPTVLQLWF*ALCPSS Trigger: TGAGGAAGGACACAGGGCCAAGAACCACAACTGAAG...CACAGTGGGTGGTGTCACCCCTGGGCAGGTGATCCTGGGTTCAGTAAGAAAGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120707.2 |
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| 3UTR GCA 72 bp | ATCACGGCAGAAGTTAATGCAGAGGCCACAGAGGAGTaGTACTTAGTGGCTTGCTCCCCATGGCTTGCTCAG | + |
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Preference number: 3 (lower is better) Translates to: ITAEVNAEATEE*YLVACSPWLAQ Trigger: CTGAGCAAGCCATGGGGAGCAAGCCACTAAGTAGCACTCCTCTGTGGCCTCTGCATTAACTTCTGCCGTGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR-3UTR CAA 90 bp | GGTGACACCACCCACTGTGGGCTGGACCCTCCCATATCAATCATGAATCAAGAATCATCTGCTGACTGCTaGTGCAGCAGCAGGAAGCTC | + |
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Preference number: 3 (lower is better) Translates to: GDTTHCGLDPPISIMNQESSADC*CSSRKL Trigger: GAGCTTCCTGCTGCTGCACAAGCAGTCAGCAGATGA...TTCTTGATTCATGATTGATATGGGAGGGTCCAGCCCACAGTGGGTGGTGTCACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120707.2 |
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| 3UTR GCA 72 bp | AGAGGAGTGCTACTTAGTGGCTTGCTCCCCATGGCTTaGTCAGTCTTTCTTACTGAACCCAGGATCACCTGC | + |
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Preference number: 3 (lower is better) Translates to: RGVLLSGLLPMA*SVFLTEPRITC Trigger: GCAGGTGATCCTGGGTTCAGTAAGAAAGACTGAGCAAGCCATGGGGAGCAAGCCACTAAGTAGCACTCCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR GCA 72 bp | CCTGGTGTATGCATCGCATCATCTGCTGACTGCTTGTaGAGCAGCAGGAAGCTCTTCAGTTGTGGTTCTTGG | + |
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Preference number: 3 (lower is better) Translates to: PGVCIASSADCL*SSRKLFSCGSW Trigger: CCAAGAACCACAACTGAAGAGCTTCCTGCTGCTGCACAAGCAGTCAGCAGATGATGCGATGCATACACCAGG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120707.2 |
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| 3UTR GCA 72 bp | GATGAGCCTGGTGTATGCATCGCATCATCTGCTGACTaGTTGTGCAGCAGCAGGAAGCTCTTCAGTTGTGGT | + |
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Preference number: 3 (lower is better) Translates to: DEPGVCIASSAD*LCSSRKLFSCG Trigger: ACCACAACTGAAGAGCTTCCTGCTGCTGCACAAGCAGTCAGCAGATGATGCGATGCATACACCAGGCTCATC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120707.2 |
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| 3UTR CCA 72 bp | GCCACAGAGGAGTGCTACTTAGTGGCTTGCTCCCCATaGCTTGCTCAGTCTTTCTTACTGAACCCAGGATCA | + |
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Preference number: 3 (lower is better) Translates to: ATEECYLVACSP*LAQSFLLNPGS Trigger: TGATCCTGGGTTCAGTAAGAAAGACTGAGCAAGCCATGGGGAGCAAGCCACTAAGTAGCACTCCTCTGTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR-3UTR CAA 90 bp | GCTTGCTCCCCATGGCTTGCTCAGTCTTTCTTACTGAACCCAGGATCACCTGCCGACAAAGACCTGTTCTaGTGCTTTCTTTCTTCAGTG | + |
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Preference number: 3 (lower is better) Translates to: ACSPWLAQSFLLNPGSPADKDLF*CFLSSV Trigger: CACTGAAGAAAGAAAGCACAAGAACAGGTCTTTGTC...GGCAGGTGATCCTGGGTTCAGTAAGAAAGACTGAGCAAGCCATGGGGAGCAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR GCA 72 bp | TTTCTTTCTTCAGTGCTAGGACTGAACCCAGGACCTTaGATAGGGAGGGAAGTGCTTTACCAGCAGCATAGC | + |
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Preference number: 3 (lower is better) Translates to: FLSSVLGLNPGP*IGREVLYQQHS Trigger: GCTATGCTGCTGGTAAAGCACTTCCCTCCCTATGCAAGGTCCTGGGTTCAGTCCTAGCACTGAAGAAAGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR TCA 72 bp | AGAAAAATGTACTACAGGTTTGCCCATAAGCCAATCTaGTGGAGGGATTTTCTCAATTCAGAGTCCCTCTCC | + |
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Preference number: 3 (lower is better) Translates to: RKMYYRFAHKPI*WRDFLNSESLS Trigger: GGAGAGGGACTCTGAATTGAGAAAATCCCTCCATCAGATTGGCTTATGGGCAAACCTGTAGTACATTTTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR TCA 72 bp | TATTTCAGCTTACAGTTCAACATCACAGTTTGTCACTaGGAGAAATCACGGCAGAAGTTAATGCAGAGGCCA | + |
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Preference number: 3 (lower is better) Translates to: YFSLQFNITVCH*EKSRQKLMQRP Trigger: TGGCCTCTGCATTAACTTCTGCCGTGATTTCTCTCAGTGACAAACTGTGATGTTGAACTGTAAGCTGAAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR-3UTR CAA 90 bp | TTCTCAATTCAGAGTCCCTCTCCCCAAATGACTCTAGCTTGTATCAAGTTGATAGACAAAGACCTGTTCTaGTGCTTTCTTTCTTCAGTG | + |
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Preference number: 3 (lower is better) Translates to: FSIQSPSPQMTLACIKLIDKDLF*CFLSSV Trigger: CACTGAAGAAAGAAAGCACAAGAACAGGTCTTTGTC...TATCAACTTGATACAAGCTAGAGTCATTTGGGGAGAGGGACTCTGAATTGAGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR CAA 72 bp | GAGCCTGGTGTATGCATCGCATCATCTGCTGACTGCTaGTGCAGCAGCAGGAAGCTCTTCAGTTGTGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: EPGVCIASSADC*CSSRKLFSCGS Trigger: AGAACCACAACTGAAGAGCTTCCTGCTGCTGCACAAGCAGTCAGCAGATGATGCGATGCATACACCAGGCTC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120707.2 |
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| CDS-3UTR GCA 90 bp | TTGTGCAGCAGCAGGAAGCTCTTCAGTTGTGGTTCTTGGCCCTGTGTCCTTCCTAGGTTGACCAGATTCTaGTATGAGGACAGAGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: LCSSRKLFSCGSWPCVLPRLTRF*YEDRGC Trigger: ACAGCCTCTGTCCTCATAGCAGAATCTGGTCAACCT...AGGAAGGACACAGGGCCAAGAACCACAACTGAAGAGCTTCCTGCTGCTGCACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120707.2 |
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| CDS-3UTR GCA 90 bp | CTTTCTTTCTTCAGTGCTAGGACTGAACCCAGGACCTTGCATAGGGAGGGAAGTTCTGCTGACTGCTTGTaGAGCAGCAGGAAGCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: LSFFSARTEPRTLHREGSSADCL*SSRKLF Trigger: GAAGAGCTTCCTGCTGCTGCACAAGCAGTCAGCAGA...ACTTCCCTCCCTATGCAAGGTCCTGGGTTCAGTCCTAGCACTGAAGAAAGAAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023357.14 |
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| CDS-3UTR CCA 90 bp | GTGCTACTTAGTGGCTTGCTCCCCATGGCTTGCTCAGTCTTTCTTACTGAACCCTTCAGTTGTGGTTCTTaGCCCTGTGTCCTTCCTCAC | + |
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Preference number: 4 (lower is better) Translates to: VLLSGLLPMACSVFLTEPFSCGS*PCVLPH Trigger: GTGAGGAAGGACACAGGGCCAAGAACCACAACTGAA...GGGTTCAGTAAGAAAGACTGAGCAAGCCATGGGGAGCAAGCCACTAAGTAGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023357.14 |
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| CDS-3UTR TCA 90 bp | GCTTGCTCCCCATGGCTTGCTCAGTCTTTCTTACTGAACCCAGGATCACCTGCCCATTTAGTTCACGGATaGGAAACTGTCTGTCCAATG | + |
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Preference number: 4 (lower is better) Translates to: ACSPWLAQSFLLNPGSPAHLVHG*ETVCPM Trigger: CATTGGACAGACAGTTTCTCATCCGTGAACTAAATG...GGCAGGTGATCCTGGGTTCAGTAAGAAAGACTGAGCAAGCCATGGGGAGCAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS-3UTR TCA 90 bp | GGAGTGCTACTTAGTGGCTTGCTCCCCATGGCTTGCTCAGTCTTTCTTACTGAAATTAGAAGGTTCTCATaGGACAAAGACGGTCGGGGT | + |
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Preference number: 4 (lower is better) Translates to: GVLLSGLLPMACSVFLTEIRRFS*DKDGRG Trigger: ACCCCGACCGTCTTTGTCTCATGAGAACCTTCTAAT...TTCAGTAAGAAAGACTGAGCAAGCCATGGGGAGCAAGCCACTAAGTAGCACTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS-3UTR TCA 90 bp | ATCACGGCAGAAGTTAATGCAGAGGCCACAGAGGAGTGCTACTTAGTGGCTTGCAATGGAACTACAGGTTaGCCAGATTCTGCTATGAGG | + |
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Preference number: 4 (lower is better) Translates to: ITAEVNAEATEECYLVACNGTTG*PDSAMR Trigger: CCTCATAGCAGAATCTGGTCAACCTGTAGTTCCATT...GCAAGCCACTAAGTAGCACTCCTCTGTGGCCTCTGCATTAACTTCTGCCGTGAT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS-3UTR TCA 90 bp | AATAATACGTCGGTTACTCCACACACAGCTGAGGTGATGAGCCTGGTGTATGCAGACCAGATTCTGCTATaGGGACAGAGGCTGTGTATT | + |
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Preference number: 4 (lower is better) Translates to: NNTSVTPHTAEVMSLVYADQILL*GQRLCI Trigger: AATACACAGCCTCTGTCCTCATAGCAGAATCTGGTC...TGCATACACCAGGCTCATCACCTCAGCTGTGTGTGGAGTAACCGACGTATTATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS-3UTR TCA 90 bp | TCTGATGGAGGGATTTTCTCAATTCAGAGTCCCTCTCCCCAAATGACTCTAGCTGACCAGATTCTGCTATaGGGACAGAGGCTGTGTATT | + |
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Preference number: 4 (lower is better) Translates to: SDGGIFSIQSPSPQMTLADQILL*GQRLCI Trigger: AATACACAGCCTCTGTCCTCATAGCAGAATCTGGTC...AGCTAGAGTCATTTGGGGAGAGGGACTCTGAATTGAGAAAATCCCTCCATCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS-3UTR CCA 90 bp | GGAGTGCTACTTAGTGGCTTGCTCCCCATGGCTTGCTCAGTCTTTCTTACTGAAAAACTGTCTGTCCAATaGAACTACAGGTTGACCAGA | + |
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Preference number: 4 (lower is better) Translates to: GVLLSGLLPMACSVFLTEKLSVQ*NYRLTR Trigger: TCTGGTCAACCTGTAGTTCCATTGGACAGACAGTTT...TTCAGTAAGAAAGACTGAGCAAGCCATGGGGAGCAAGCCACTAAGTAGCACTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS-3UTR CCA 90 bp | GCAGTAAACCATGAGTGGCTGAATGCAGACACTCAAACATTTACAAGCAGTGGTGAAGCTCTTCAGTTGTaGTTCTTGGCCCTGTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: AVNHEWLNADTQTFTSSGEALQL*FLALCP Trigger: AGGACACAGGGCCAAGAACCACAACTGAAGAGCTTC...ACCACTGCTTGTAAATGTTTGAGTGTCTGCATTCAGCCACTCATGGTTTACTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023357.14 |
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| 3UTR CAA 72 bp | CTCAATTCAGAGTCCCTCTCCCCAAATGACTCTAGCTaGTATCAAGTTGATATAAAACTAGCCAGGGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LNSESLSPNDSS*YQVDIKLARAG Trigger: GCCTGCCCTGGCTAGTTTTATATCAACTTGATACAAGCTAGAGTCATTTGGGGAGAGGGACTCTGAATTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS-3UTR TCA 90 bp | GAGTCCCTCTCCCCAAATGACTCTAGCTTGTATCAAGTTGATATAAAACTAGCCATTAGAAGGTTCTCATaGGACAAAGACGGTCGGGGT | + |
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Preference number: 4 (lower is better) Translates to: ESLSPNDSSLYQVDIKLAIRRFS*DKDGRG Trigger: ACCCCGACCGTCTTTGTCTCATGAGAACCTTCTAAT...GGCTAGTTTTATATCAACTTGATACAAGCTAGAGTCATTTGGGGAGAGGGACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS-3UTR CCA 90 bp | GACAAAGACCTGTTCTTGTGCTTTCTTTCTTCAGTGCTAGGACTGAACCCAGGAAAACTGTCTGTCCAATaGAACTACAGGTTGACCAGA | + |
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Preference number: 4 (lower is better) Translates to: DKDLFLCFLSSVLGLNPGKLSVQ*NYRLTR Trigger: TCTGGTCAACCTGTAGTTCCATTGGACAGACAGTTT...TCCTGGGTTCAGTCCTAGCACTGAAGAAAGAAAGCACAAGAACAGGTCTTTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS-3UTR CCA 90 bp | CCTGTTCTTGTGCTTTCTTTCTTCAGTGCTAGGACTGAACCCAGGACCTTGCATGGACCACGCAAGAAATaGGCTAAAATTCCATACAAT | + |
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Preference number: 4 (lower is better) Translates to: PVLVLSFFSARTEPRTLHGPRKK*AKIPYN Trigger: ATTGTATGGAATTTTAGCCCATTTCTTGCGTGGTCC...ATGCAAGGTCCTGGGTTCAGTCCTAGCACTGAAGAAAGAAAGCACAAGAACAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023357.14 |
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| CDS-3UTR GCA 90 bp | AATTCAGAGTCCCTCTCCCCAAATGACTCTAGCTTGTATCAAGTTGATATAAAAAGGTTGACCAGATTCTaGTATGAGGACAGAGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: NSESLSPNDSSLYQVDIKRLTRF*YEDRGC Trigger: ACAGCCTCTGTCCTCATAGCAGAATCTGGTCAACCT...TTTTATATCAACTTGATACAAGCTAGAGTCATTTGGGGAGAGGGACTCTGAATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS-3UTR TCA 90 bp | AATCAAGAAAAATGTACTACAGGTTTGCCCATAAGCCAATCTGATGGAGGGATTCATTTAGTTCACGGATaGGAAACTGTCTGTCCAATG | + |
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Preference number: 4 (lower is better) Translates to: NQEKCTTGLPISQSDGGIHLVHG*ETVCPM Trigger: CATTGGACAGACAGTTTCTCATCCGTGAACTAAATG...AATCCCTCCATCAGATTGGCTTATGGGCAAACCTGTAGTACATTTTTCTTGATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR CAA 72 bp | GAAGGTTTATTTCAGCTTACAGTTCAACATCACAGTTaGTCACTGAGAGAAATCACGGCAGAAGTTAATGCA | + |
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Preference number: 4 (lower is better) Translates to: EGLFQLTVQHHS*SLREITAEVNA Trigger: TGCATTAACTTCTGCCGTGATTTCTCTCAGTGACAAACTGTGATGTTGAACTGTAAGCTGAAATAAACCTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| 3UTR CAA 72 bp | ATATCAATCATGAATCAAGAAAAATGTACTACAGGTTaGCCCATAAGCCAATCTGATGGAGGGATTTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: ISIMNQEKCTTG*PISQSDGGIFS Trigger: TGAGAAAATCCCTCCATCAGATTGGCTTATGGGCAAACCTGTAGTACATTTTTCTTGATTCATGATTGATAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS CCA 90 bp | GCTGACTGCTTGTGCAGCAGCAGGAAGCTCTTCAGTTGTGGTTCTTaGCCCTGTGTCCTTCCTCACGTGGTCATCGTCAGGTCTTCTGCT | + |
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Preference number: 5 (lower is better) Translates to: ADCLCSSRKLFSCGS*PCVLPHVVIVRSSA Trigger: AGCAGAAGACCTGACGATGACCACGTGAGGAAGGACACAGGGCCAAGAACCACAACTGAAGAGCTTCCTGCTGCTGCACAAGCAGTCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023357.14 |
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| CDS CCA 90 bp | TGCTTGGTTGCCGGGTGCAGGGTTGACTCTGTCAGAAGCACATTCTaGGCTCCATCTGGAGGACCACGCAAGAAATGGGCTAAAATTCCA | + |
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Preference number: 5 (lower is better) Translates to: CLVAGCRVDSVRSTF*APSGGPRKKWAKIP Trigger: TGGAATTTTAGCCCATTTCTTGCGTGGTCCTCCAGATGGAGCCCAGAATGTGCTTCTGACAGAGTCAACCCTGCACCCGGCAACCAAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023357.14 |
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| CDS-3UTR CAA 90 bp | ATCACGGCAGAAGTTAATGCAGAGGCCACAGAGGAGTGCTACTTAGTGGCTTGCTCATCTGCTGACTGCTaGTGCAGCAGCAGGAAGCTC | + |
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Preference number: 5 (lower is better) Translates to: ITAEVNAEATEECYLVACSSADC*CSSRKL Trigger: GAGCTTCCTGCTGCTGCACAAGCAGTCAGCAGATGA...GCAAGCCACTAAGTAGCACTCCTCTGTGGCCTCTGCATTAACTTCTGCCGTGAT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023357.14 |
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| CDS-3UTR CAA 90 bp | GAAATCACGGCAGAAGTTAATGCAGAGGCCACAGAGGAGTGCTACTTAGTGGCTTCATCATCCAGGGCATaGAAAACTTCAGCACGGATC | + |
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Preference number: 5 (lower is better) Translates to: EITAEVNAEATEECYLVASSSRA*KTSARI Trigger: GATCCGTGCTGAAGTTTTCAATGCCCTGGATGATGA...AGCCACTAAGTAGCACTCCTCTGTGGCCTCTGCATTAACTTCTGCCGTGATTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS-3UTR CAA 90 bp | TTAGTGGCTTGCTCCCCATGGCTTGCTCAGTCTTTCTTACTGAACCCAGGATCATCATCATCCAGGGCATaGAAAACTTCAGCACGGATC | + |
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Preference number: 5 (lower is better) Translates to: LVACSPWLAQSFLLNPGSSSSRA*KTSARI Trigger: GATCCGTGCTGAAGTTTTCAATGCCCTGGATGATGA...TGATCCTGGGTTCAGTAAGAAAGACTGAGCAAGCCATGGGGAGCAAGCCACTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS TCA 90 bp | CATGAGACAAAGACGGTCGGGGTTCACGATCATCATCCAGGGCATTaGAAACTTCAGCACGGATCCTTGCTTTTAAATGTCCTAACACTC | + |
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Preference number: 5 (lower is better) Translates to: HETKTVGVHDHHPGH*KLQHGSLLLNVLTL Trigger: GAGTGTTAGGACATTTAAAAGCAAGGATCCGTGCTGAAGTTTTCAATGCCCTGGATGATGATCGTGAACCCCGACCGTCTTTGTCTCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS-3UTR CAA 90 bp | AGTTTGTCACTGAGAGAAATCACGGCAGAAGTTAATGCAGAGGCCACAGAGGAGCAATGGAACTACAGGTaGACCAGATTCTGCTATGAG | + |
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Preference number: 5 (lower is better) Translates to: SLSLREITAEVNAEATEEQWNYR*TRFCYE Trigger: CTCATAGCAGAATCTGGTCAACCTGTAGTTCCATTG...CTCCTCTGTGGCCTCTGCATTAACTTCTGCCGTGATTTCTCTCAGTGACAAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS-3UTR CAA 90 bp | GACAAAGACCTGTTCTTGTGCTTTCTTTCTTCAGTGCTAGGACTGAACCCAGGACAATGGAACTACAGGTaGACCAGATTCTGCTATGAG | + |
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Preference number: 5 (lower is better) Translates to: DKDLFLCFLSSVLGLNPGQWNYR*TRFCYE Trigger: CTCATAGCAGAATCTGGTCAACCTGTAGTTCCATTG...TCCTGGGTTCAGTCCTAGCACTGAAGAAAGAAAGCACAAGAACAGGTCTTTGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS-3UTR CAA 90 bp | TTCTCAATTCAGAGTCCCTCTCCCCAAATGACTCTAGCTTGTATCAAGTTGATACTTCAGTTGTGGTTCTaGGCCCTGTGTCCTTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: FSIQSPSPQMTLACIKLILQLWF*ALCPSS Trigger: TGAGGAAGGACACAGGGCCAAGAACCACAACTGAAG...TATCAACTTGATACAAGCTAGAGTCATTTGGGGAGAGGGACTCTGAATTGAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023357.14 |
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| CDS CCA 90 bp | GTCAGAAGCACATTCTGGGCTCCATCTGGAGGACCACGCAAGAAATaGGCTAAAATTCCATACAATAGAGGAATTGAGTTATCCTTTGAT | + |
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Preference number: 5 (lower is better) Translates to: VRSTFWAPSGGPRKK*AKIPYNRGIELSFD Trigger: ATCAAAGGATAACTCAATTCCTCTATTGTATGGAATTTTAGCCCATTTCTTGCGTGGTCCTCCAGATGGAGCCCAGAATGTGCTTCTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023357.14 |
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| CDS-3UTR CAA 90 bp | AGTTTGTCACTGAGAGAAATCACGGCAGAAGTTAATGCAGAGGCCACAGAGGAGACGCAAGAAATGGGATaGAGTTATCCTTTGATTCTT | + |
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Preference number: 5 (lower is better) Translates to: SLSLREITAEVNAEATEETQEMG*SYPLIL Trigger: AAGAATCAAAGGATAACTCAATCCCATTTCTTGCGT...CTCCTCTGTGGCCTCTGCATTAACTTCTGCCGTGATTTCTCTCAGTGACAAACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120707.2 |
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| CDS TCA 90 bp | AATTCCAAATACTCCCTAATTAATTCATTAATTAGAAGGTTCTCATaGGACAAAGACGGTCGGGGTTCACGATCATCATCCAGGGCATTG | + |
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Preference number: 5 (lower is better) Translates to: NSKYSLINSLIRRFS*DKDGRGSRSSSRAL Trigger: CAATGCCCTGGATGATGATCGTGAACCCCGACCGTCTTTGTCTCATGAGAACCTTCTAATTAATGAATTAATTAGGGAGTATTTGGAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS TCA 72 bp | CGTGGTCATCGTCAGGTCTTCTGCTGGGCTTCCAGCTaGGATGCTTGGTTGCCGGGTGCAGGGTTGACTCTG | + |
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Preference number: 6 (lower is better) Translates to: RGHRQVFCWASS*DAWLPGAGLTL Trigger: CAGAGTCAACCCTGCACCCGGCAACCAAGCATCTCAGCTGGAAGCCCAGCAGAAGACCTGACGATGACCACG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023357.14 |
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| CDS GCA 72 bp | CTGCTGGGCTTCCAGCTGAGATGCTTGGTTGCCGGGTaGAGGGTTGACTCTGTCAGAAGCACATTCTGGGCT | + |
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Preference number: 6 (lower is better) Translates to: LLGFQLRCLVAG*RVDSVRSTFWA Trigger: AGCCCAGAATGTGCTTCTGACAGAGTCAACCCTGCACCCGGCAACCAAGCATCTCAGCTGGAAGCCCAGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS CCA 72 bp | GCCGGGTGCAGGGTTGACTCTGTCAGAAGCACATTCTaGGCTCCATCTGGAGGACCACGCAAGAAATGGGAT | + |
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Preference number: 6 (lower is better) Translates to: AGCRVDSVRSTF*APSGGPRKKWD Trigger: ATCCCATTTCTTGCGTGGTCCTCCAGATGGAGCCCAGAATGTGCTTCTGACAGAGTCAACCCTGCACCCGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120707.2 |
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| CDS CCA 72 bp | TTGTGCAGCAGCAGGAAGCTCTTCAGTTGTGGTTCTTaGCCCTGTGTCCTTCCTCACGTGGTCATCGTCAGG | + |
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Preference number: 6 (lower is better) Translates to: LCSSRKLFSCGS*PCVLPHVVIVR Trigger: CCTGACGATGACCACGTGAGGAAGGACACAGGGCCAAGAACCACAACTGAAGAGCTTCCTGCTGCTGCACAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023357.14 |
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| CDS CAA 72 bp | CTTGTGCAGCAGCAGGAAGCTCTTCAGTTGTGGTTCTaGGCCCTGTGTCCTTCCTCACGTGGTCATCGTCAG | + |
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Preference number: 6 (lower is better) Translates to: LVQQQEALQLWF*ALCPSSRGHRQ Trigger: CTGACGATGACCACGTGAGGAAGGACACAGGGCCAAGAACCACAACTGAAGAGCTTCCTGCTGCTGCACAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023357.14 |
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| CDS TCA 72 bp | AAGACGGTCGGGGTTCACGATCATCATCCAGGGCATTaGAAACTTCAGCACGGATCCTTGCTTTTAAATGTC | + |
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Preference number: 6 (lower is better) Translates to: KTVGVHDHHPGH*KLQHGSLLLNV Trigger: GACATTTAAAAGCAAGGATCCGTGCTGAAGTTTTCAATGCCCTGGATGATGATCGTGAACCCCGACCGTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023357.14 ENSMUST00000120707.2 |
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| CDS CCA 72 bp | ACATTCTGGGCTCCATCTGGAGGACCACGCAAGAAATaGGCTAAAATTCCATACAATAGAGGAATTGAGTTA | + |
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Preference number: 6 (lower is better) Translates to: TFWAPSGGPRKK*AKIPYNRGIEL Trigger: TAACTCAATTCCTCTATTGTATGGAATTTTAGCCCATTTCTTGCGTGGTCCTCCAGATGGAGCCCAGAATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023357.14 |
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