RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CEP192 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024542

Ensembl transcript IDs: ENSMUST00000025425.7, ENSMUST00000225303.2

Found 230 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGTGACTGCGGTATCTACTTTAATGAGGGCATCTCTGGAGGAGCATaGGTCTTCAGGGTCATTCTCTGCTCTGATGCTCTGGCCAGAGAG +
Preference number: 1 (lower is better)
Translates to: CDCGIYFNEGISGGA*VFRVILCSDALARE
Trigger: CTCTCTGGCCAGAGCATCAGAGCAGAGAATGACCCTGAAGACTCATGCTCCTCCAGAGATGCCCTCATTAAAGTAGATACCGCAGTCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR TCA 90 bp TTTGGATCACAAGTAAAGCTTCAAATCTGCCCACTGCCTCTGGTCTaGAGTGCACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGT +
Preference number: 1 (lower is better)
Translates to: FGSQVKLQICPLPLV*SAPGCGYNVGPSKC
Trigger: ACACTTTGAGGGCCCGACATTATATCCACATCCCGGTGCACTTCAGACCAGAGGCAGTGGGCAGATTTGAAGCTTTACTTGTGATCCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR CCA 90 bp GATTCACCGATTAGTCGAATAGCAATACTCTTGCCTTCATCTGTTTaGATCACAAGTAAAGCTTCAAATCTGCCCACTGCCTCTGGTCTG +
Preference number: 1 (lower is better)
Translates to: DSPISRIAILLPSSV*ITSKASNLPTASGL
Trigger: CAGACCAGAGGCAGTGGGCAGATTTGAAGCTTTACTTGTGATCCAAACAGATGAAGGCAAGAGTATTGCTATTCGACTAATCGGTGAATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR-3UTR TCA 90 bp CACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTACTTGGAGTGTCTAATAGCTGCCCAGGCGTGTaGGCAGCTGTCTCAGACACA +
Preference number: 2 (lower is better)
Translates to: HRDVDIMSGPQSVLGVSNSCPGV*AAVSDT
Trigger: TGTGTCTGAGACAGCTGCTCACACGCCTGGGCAGCT...ATTAGACACTCCAAGTACACTTTGAGGGCCCGACATTATATCCACATCCCGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR-3UTR TCA 90 bp CTCTGGTCTGAAGTGCACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTACGGGGGTGCAAAAGATaGCAGGTGCCACTTTACATC +
Preference number: 2 (lower is better)
Translates to: LWSEVHRDVDIMSGPQSVRGCKR*QVPLYI
Trigger: GATGTAAAGTGGCACCTGTCATCTTTTGCACCCCCG...TACACTTTGAGGGCCCGACATTATATCCACATCCCGGTGCACTTCAGACCAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR-3UTR TCA 90 bp CACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTACTTGGAGTGTCTAATGGTCATTCTCTGCTCTaGTGCTCTGGCCAGAGAGCT +
Preference number: 2 (lower is better)
Translates to: HRDVDIMSGPQSVLGVSNGHSLL*CSGQRA
Trigger: AGCTCTCTGGCCAGAGCATCAGAGCAGAGAATGACC...ATTAGACACTCCAAGTACACTTTGAGGGCCCGACATTATATCCACATCCCGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR-3UTR CCA 90 bp CTCTGGTCTGAAGTGCACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTAGCCACTTTACATCTGTaGGGCCACAATTCTCCAGTT +
Preference number: 2 (lower is better)
Translates to: LWSEVHRDVDIMSGPQSVATLHL*GHNSPV
Trigger: AACTGGAGAATTGTGGCCCCACAGATGTAAAGTGGC...TACACTTTGAGGGCCCGACATTATATCCACATCCCGGTGCACTTCAGACCAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR-3UTR GCA 90 bp TGCCTTCATCTGTTTGGATCACAAGTAAAGCTTCAAATCTGCCCACTGCCTCTGTTCAGGGTCATTCTCTaGTCTGATGCTCTGGCCAGA +
Preference number: 2 (lower is better)
Translates to: CLHLFGSQVKLQICPLPLFRVIL*SDALAR
Trigger: TCTGGCCAGAGCATCAGAGCAGAGAATGACCCTGAA...CAGAGGCAGTGGGCAGATTTGAAGCTTTACTTGTGATCCAAACAGATGAAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR-3UTR GCA 90 bp CTGGGCAAAAATATGATGGAGACCTTTTGGATTCCATGGCCTTCTAGTGTGCCAGCAAAAGATGACAGGTaGCACTTTACATCTGTGGGG +
Preference number: 2 (lower is better)
Translates to: LGKNMMETFWIPWPSSVPAKDDR*HFTSVG
Trigger: CCCCACAGATGTAAAGTGGCACCTGTCATCTTTTGC...TGGCACACTAGAAGGCCATGGAATCCAAAAGGTCTCCATCATATTTTTGCCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR-3UTR TCA 90 bp GGTGGCACTCAACATCCCAAAACTGGGCATAATTCCCTTTGTCTCTGGGCAAAATGTGAGCTAGGTACATaGTATTTAGTGAGGGCTTCA +
Preference number: 2 (lower is better)
Translates to: GGTQHPKTGHNSLCLWAKCELGT*YLVRAS
Trigger: TGAAGCCCTCACTAAATATCATGTACCTAGCTCACA...TTTTGCCCAGAGACAAAGGGAATTATGCCCAGTTTTGGGATGTTGAGTGCCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR-3UTR TCA 90 bp CACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTACTTGGAGTGTCTAATCTCTGGGCAAAAATATaGTGGAGACCTTTTGGATTC +
Preference number: 2 (lower is better)
Translates to: HRDVDIMSGPQSVLGVSNLWAKI*WRPFGF
Trigger: GAATCCAAAAGGTCTCCATCATATTTTTGCCCAGAG...ATTAGACACTCCAAGTACACTTTGAGGGCCCGACATTATATCCACATCCCGGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR-3UTR CCA 90 bp GTATCTACTTTAATGAGGGCATCTCTGGAGGAGCATGAGTCTTCAGGGTCATTCTCTACCAGGTTCTGTTaGAGGAAAAATCACTGTCTT +
Preference number: 2 (lower is better)
Translates to: VSTLMRASLEEHESSGSFSTRFC*RKNHCL
Trigger: AAGACAGTGATTTTTCCTCCAACAGAACCTGGTAGA...GAATGACCCTGAAGACTCATGCTCCTCCAGAGATGCCCTCATTAAAGTAGATAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR GCA 72 bp AGCTGTCTCAGACACAGCGCGCCTCCGGGATGTGACTaGGGTATCTACTTTAATGAGGGCATCTCTGGAGGA +
Preference number: 3 (lower is better)
Translates to: SCLRHSAPPGCD*GIYFNEGISGG
Trigger: TCCTCCAGAGATGCCCTCATTAAAGTAGATACCGCAGTCACATCCCGGAGGCGCGCTGTGTCTGAGACAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR TCA 72 bp CAAGTAAAGCTTCAAATCTGCCCACTGCCTCTGGTCTaGAGTGCACCGGGATGTGGATATAATGTCGGGCCC +
Preference number: 3 (lower is better)
Translates to: QVKLQICPLPLV*SAPGCGYNVGP
Trigger: GGGCCCGACATTATATCCACATCCCGGTGCACTTCAGACCAGAGGCAGTGGGCAGATTTGAAGCTTTACTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR TCA 72 bp GGTATCTACTTTAATGAGGGCATCTCTGGAGGAGCATaGGTCTTCAGGGTCATTCTCTGCTCTGATGCTCTG +
Preference number: 3 (lower is better)
Translates to: GIYFNEGISGGA*VFRVILCSDAL
Trigger: CAGAGCATCAGAGCAGAGAATGACCCTGAAGACTCATGCTCCTCCAGAGATGCCCTCATTAAAGTAGATACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR CCA 72 bp TGTCGGGCCCTCAAAGTGTACTTGGAGTGTCTAATGTaGAAAGGTTCTCTGGGGCTCAAAAACTTCAGTGCA +
Preference number: 3 (lower is better)
Translates to: CRALKVYLECLM*KGSLGLKNFSA
Trigger: TGCACTGAAGTTTTTGAGCCCCAGAGAACCTTTCCACATTAGACACTCCAAGTACACTTTGAGGGCCCGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR CCA 72 bp CTGGGCAAAAATATGATGGAGACCTTTTGGATTCCATaGCCTTCTAGTGTGCCAGAAATGGGAGAACATCTG +
Preference number: 3 (lower is better)
Translates to: LGKNMMETFWIP*PSSVPEMGEHL
Trigger: CAGATGTTCTCCCATTTCTGGCACACTAGAAGGCCATGGAATCCAAAAGGTCTCCATCATATTTTTGCCCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR-3UTR CAA 90 bp CTGGGCAAAAATATGATGGAGACCTTTTGGATTCCATGGCCTTCTAGTGTGCCATTCTACCAGGTTCTGTaGGAGGAAAAATCACTGTCT +
Preference number: 3 (lower is better)
Translates to: LGKNMMETFWIPWPSSVPFYQVL*EEKSLS
Trigger: AGACAGTGATTTTTCCTCCAACAGAACCTGGTAGAA...TGGCACACTAGAAGGCCATGGAATCCAAAAGGTCTCCATCATATTTTTGCCCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR TCA 72 bp ACTGGGCATAATTCCCTTTGTCTCTGGGCAAAAATATaGTGGAGACCTTTTGGATTCCATGGCCTTCTAGTG +
Preference number: 3 (lower is better)
Translates to: TGHNSLCLWAKI*WRPFGFHGLLV
Trigger: CACTAGAAGGCCATGGAATCCAAAAGGTCTCCATCATATTTTTGCCCAGAGACAAAGGGAATTATGCCCAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR CCA 72 bp ATTAGTCGAATAGCAATACTCTTGCCTTCATCTGTTTaGATCACAAGTAAAGCTTCAAATCTGCCCACTGCC +
Preference number: 3 (lower is better)
Translates to: ISRIAILLPSSV*ITSKASNLPTA
Trigger: GGCAGTGGGCAGATTTGAAGCTTTACTTGTGATCCAAACAGATGAAGGCAAGAGTATTGCTATTCGACTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp TCAGTTTCATCAACTCCCTTGACATACGGGGGTGCAAAAGATGACAGGTGCCACCGCAGGCATCATCCCTaGGTCCCGTGGCTCAGTTTC +
Preference number: 4 (lower is better)
Translates to: SVSSTPLTYGGAKDDRCHRRHHP*VPWLSF
Trigger: GAAACTGAGCCACGGGACTCAGGGATGATGCCTGCG...GTGGCACCTGTCATCTTTTGCACCCCCGTATGTCAAGGGAGTTGATGAAACTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp CACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTACTTGGAGTGTCTAATGCTTCCCAGAGCCTCTaGCTGCCCTACCGTGTCAGC +
Preference number: 4 (lower is better)
Translates to: HRDVDIMSGPQSVLGVSNASQSL*LPYRVS
Trigger: GCTGACACGGTAGGGCAGGCAGAGGCTCTGGGAAGC...ATTAGACACTCCAAGTACACTTTGAGGGCCCGACATTATATCCACATCCCGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp TCAGTTTCATCAACTCCCTTGACATACGGGGGTGCAAAAGATGACAGGTGCCACGGTGGCATTCCCAGATaGGGCGCCAGGAGCTATGTA +
Preference number: 4 (lower is better)
Translates to: SVSSTPLTYGGAKDDRCHGGIPR*GARSYV
Trigger: TACATAGCTCCTGGCGCCCCATCTGGGAATGCCACC...GTGGCACCTGTCATCTTTTGCACCCCCGTATGTCAAGGGAGTTGATGAAACTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp GGTGGCACTCAACATCCCAAAACTGGGCATAATTCCCTTTGTCTCTGGGCAAAATGGGTGGGCAGACTGTaGGAGAAAAGGAGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: GGTQHPKTGHNSLCLWAKWVGRL*EKRRAL
Trigger: CAAGGCCCTCCTTTTCTCTCACAGTCTGCCCACCCA...TTTTGCCCAGAGACAAAGGGAATTATGCCCAGTTTTGGGATGTTGAGTGCCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp TCAGTTTCATCAACTCCCTTGACATACGGGGGTGCAAAAGATGACAGGTGCCACTCCCACAGACCTGCATaGCTGCATGGCACTGTGACA +
Preference number: 4 (lower is better)
Translates to: SVSSTPLTYGGAKDDRCHSHRPA*LHGTVT
Trigger: TGTCACAGTGCCATGCAGGCATGCAGGTCTGTGGGA...GTGGCACCTGTCATCTTTTGCACCCCCGTATGTCAAGGGAGTTGATGAAACTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp CTCTGGTCTGAAGTGCACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTAGAAATCCCACAGACCTaGATGCCTGCATGGCACTGT +
Preference number: 4 (lower is better)
Translates to: LWSEVHRDVDIMSGPQSVEIPQT*MPAWHC
Trigger: ACAGTGCCATGCAGGCATGCAGGTCTGTGGGATTTC...TACACTTTGAGGGCCCGACATTATATCCACATCCCGGTGCACTTCAGACCAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp CTCTGGTCTGAAGTGCACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTAGGGTCTGTGAAGCAATaGCTACACAGCAAGCGTGAG +
Preference number: 4 (lower is better)
Translates to: LWSEVHRDVDIMSGPQSVGSVKQ*LHSKRE
Trigger: CTCACGCTTGCTGTGTAGGCATTGCTTCACAGACCC...TACACTTTGAGGGCCCGACATTATATCCACATCCCGGTGCACTTCAGACCAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp ACTTTACATCTGTGGGGCCACAATTCTCCAGTTCCAGATAGTTCTCTGAGGTTCCCCAGAGCCTCTGCCTaGCCTACCGTGTCAGCATCT +
Preference number: 4 (lower is better)
Translates to: TLHLWGHNSPVPDSSLRFPRASA*PTVSAS
Trigger: AGATGCTGACACGGTAGGGCAGGCAGAGGCTCTGGG...GAACCTCAGAGAACTATCTGGAACTGGAGAATTGTGGCCCCACAGATGTAAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp GTATCTACTTTAATGAGGGCATCTCTGGAGGAGCATGAGTCTTCAGGGTCATTCGATCCTAGCTACTCCTaGTCGTGCTCGGAGGGCCAC +
Preference number: 4 (lower is better)
Translates to: VSTLMRASLEEHESSGSFDPSYS*SCSEGH
Trigger: GTGGCCCTCCGAGCACGAGCAGGAGTAGCTAGGATC...GAATGACCCTGAAGACTCATGCTCCTCCAGAGATGCCCTCATTAAAGTAGATAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp GTATCTACTTTAATGAGGGCATCTCTGGAGGAGCATGAGTCTTCAGGGTCATTCGACGGGGCTGCTAGCTaGGCAGTAATGTCAGCATGC +
Preference number: 4 (lower is better)
Translates to: VSTLMRASLEEHESSGSFDGAAS*AVMSAC
Trigger: GCATGCTGACATTACTGCTCAGCTAGCAGCCCCGTC...GAATGACCCTGAAGACTCATGCTCCTCCAGAGATGCCCTCATTAAAGTAGATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp ACTTTACATCTGTGGGGCCACAATTCTCCAGTTCCAGATAGTTCTCTGAGGTTCGGAATATCTGAGCAGTaGGGCCCAGGTGGCAGAGGT +
Preference number: 4 (lower is better)
Translates to: TLHLWGHNSPVPDSSLRFGISEQ*GPGGRG
Trigger: ACCTCTGCCACCTGGGCCTCACTGCTCAGATATTCC...GAACCTCAGAGAACTATCTGGAACTGGAGAATTGTGGCCCCACAGATGTAAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp CTCTGGTCTGAAGTGCACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTAGGTCAGCCGCTCTTCTaGGCCAAAAGTGTTCTGAAT +
Preference number: 4 (lower is better)
Translates to: LWSEVHRDVDIMSGPQSVGQPLF*AKSVLN
Trigger: ATTCAGAACACTTTTGGCTCAGAAGAGCGGCTGACC...TACACTTTGAGGGCCCGACATTATATCCACATCCCGGTGCACTTCAGACCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp TCAGTTTCATCAACTCCCTTGACATACGGGGGTGCAAAAGATGACAGGTGCCACGCTATGTATAGAGAGTaGCCAGTCCAGAGGGCAGGA +
Preference number: 4 (lower is better)
Translates to: SVSSTPLTYGGAKDDRCHAMYRE*PVQRAG
Trigger: TCCTGCCCTCTGGACTGGGCACTCTCTATACATAGC...GTGGCACCTGTCATCTTTTGCACCCCCGTATGTCAAGGGAGTTGATGAAACTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp CACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTACTTGGAGTGTCTAATACTCTGATGCTGACTTaGAGCCAGTGGTCAGTGGGG +
Preference number: 4 (lower is better)
Translates to: HRDVDIMSGPQSVLGVSNTLMLT*SQWSVG
Trigger: CCCCACTGACCACTGGCTGCAAGTCAGCATCAGAGT...ATTAGACACTCCAAGTACACTTTGAGGGCCCGACATTATATCCACATCCCGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp GGTGGCACTCAACATCCCAAAACTGGGCATAATTCCCTTTGTCTCTGGGCAAAAGTGTCCTGGGCTGGGTaGGCAGACTGTGAGAGAAAA +
Preference number: 4 (lower is better)
Translates to: GGTQHPKTGHNSLCLWAKVSWAG*ADCERK
Trigger: TTTTCTCTCACAGTCTGCCCACCCAGCCCAGGACAC...TTTTGCCCAGAGACAAAGGGAATTATGCCCAGTTTTGGGATGTTGAGTGCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp ATGACAGGTGCCACTTTACATCTGTGGGGCCACAATTCTCCAGTTCCAGATAGTCCCCTGGGCAAATCCTaGTCTCACAATTGCTGGTCA +
Preference number: 4 (lower is better)
Translates to: MTGATLHLWGHNSPVPDSPLGKS*SHNCWS
Trigger: TGACCAGCAATTGTGAGATCAGGATTTGCCCAGGGG...ACTATCTGGAACTGGAGAATTGTGGCCCCACAGATGTAAAGTGGCACCTGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp ACTTTACATCTGTGGGGCCACAATTCTCCAGTTCCAGATAGTTCTCTGAGGTTCAGCCACAAGCTCTGGTaGAGCAGCAGGATACGGAGA +
Preference number: 4 (lower is better)
Translates to: TLHLWGHNSPVPDSSLRFSHKLW*SSRIRR
Trigger: TCTCCGTATCCTGCTGCTGCACCAGAGCTTGTGGCT...GAACCTCAGAGAACTATCTGGAACTGGAGAATTGTGGCCCCACAGATGTAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp GGTGGCACTCAACATCCCAAAACTGGGCATAATTCCCTTTGTCTCTGGGCAAAATGCTCTAACAAAGGCTaGTCTGGAGCCAGTGTTGCG +
Preference number: 4 (lower is better)
Translates to: GGTQHPKTGHNSLCLWAKCSNKG*SGASVA
Trigger: CGCAACACTGGCTCCAGAGCAGCCTTTGTTAGAGCA...TTTTGCCCAGAGACAAAGGGAATTATGCCCAGTTTTGGGATGTTGAGTGCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp GGTGGCACTCAACATCCCAAAACTGGGCATAATTCCCTTTGTCTCTGGGCAAAATTGTCCAGGAGAGCTTaGCCAATCAGGTCCTGCTCA +
Preference number: 4 (lower is better)
Translates to: GGTQHPKTGHNSLCLWAKLSRRA*PIRSCS
Trigger: TGAGCAGGACCTGATTGGCCAAGCTCTCCTGGACAA...TTTTGCCCAGAGACAAAGGGAATTATGCCCAGTTTTGGGATGTTGAGTGCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp CTGGGCAAAAATATGATGGAGACCTTTTGGATTCCATGGCCTTCTAGTGTGCCACCCGGATTAGGAACCTaGCTGCTAGCTTCACTGCTG +
Preference number: 4 (lower is better)
Translates to: LGKNMMETFWIPWPSSVPPGLGT*LLASLL
Trigger: CAGCAGTGAAGCTAGCAGCCAGGTTCCTAATCCGGG...TGGCACACTAGAAGGCCATGGAATCCAAAAGGTCTCCATCATATTTTTGCCCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp TGCCTTCATCTGTTTGGATCACAAGTAAAGCTTCAAATCTGCCCACTGCCTCTGACCTGCATGCCTGCATaGCACTGTGACAAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: CLHLFGSQVKLQICPLPLTCMPA*HCDKVA
Trigger: TGCCACCTTGTCACAGTGCCATGCAGGCATGCAGGT...CAGAGGCAGTGGGCAGATTTGAAGCTTTACTTGTGATCCAAACAGATGAAGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp CACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTACTTGGAGTGTCTAATATCCATGTTGTGGTGTaGCTGTCAGGCAATGTGCAG +
Preference number: 4 (lower is better)
Translates to: HRDVDIMSGPQSVLGVSNIHVVV*LSGNVQ
Trigger: CTGCACATTGCCTGACAGTCACACCACAACATGGAT...ATTAGACACTCCAAGTACACTTTGAGGGCCCGACATTATATCCACATCCCGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp GATTCACCGATTAGTCGAATAGCAATACTCTTGCCTTCATCTGTTTGGATCACATGGGGTGCAGGATTGTaGTGGGTTCCAGAGGCACCC +
Preference number: 4 (lower is better)
Translates to: DSPISRIAILLPSSVWITWGAGL*WVPEAP
Trigger: GGGTGCCTCTGGAACCCAGCACAATCCTGCACCCCA...TGTGATCCAAACAGATGAAGGCAAGAGTATTGCTATTCGACTAATCGGTGAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp ACTTTACATCTGTGGGGCCACAATTCTCCAGTTCCAGATAGTTCTCTGAGGTTCAAATCCCGAGGGGCATaGATCCTAGCTACTCCTGCT +
Preference number: 4 (lower is better)
Translates to: TLHLWGHNSPVPDSSLRFKSRGA*ILATPA
Trigger: AGCAGGAGTAGCTAGGATCCATGCCCCTCGGGATTT...GAACCTCAGAGAACTATCTGGAACTGGAGAATTGTGGCCCCACAGATGTAAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp CTGGGCAAAAATATGATGGAGACCTTTTGGATTCCATGGCCTTCTAGTGTGCCAACTCTCTGGGTCCACTaGAAACTGACTTCCTTGCTC +
Preference number: 4 (lower is better)
Translates to: LGKNMMETFWIPWPSSVPTLWVH*KLTSLL
Trigger: GAGCAAGGAAGTCAGTTTTCAGTGGACCCAGAGAGT...TGGCACACTAGAAGGCCATGGAATCCAAAAGGTCTCCATCATATTTTTGCCCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp TGCCTTCATCTGTTTGGATCACAAGTAAAGCTTCAAATCTGCCCACTGCCTCTGAAGCAAGTTCTGGGGTaGAGCAGTAGAGCACAGGTT +
Preference number: 4 (lower is better)
Translates to: CLHLFGSQVKLQICPLPLKQVLG*SSRAQV
Trigger: AACCTGTGCTCTACTGCTGCACCCCAGAACTTGCTT...CAGAGGCAGTGGGCAGATTTGAAGCTTTACTTGTGATCCAAACAGATGAAGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp ATGACAGGTGCCACTTTACATCTGTGGGGCCACAATTCTCCAGTTCCAGATAGTGAGAGCTTTCCAGCCTaGATAGGTCAAGTCACCAAA +
Preference number: 4 (lower is better)
Translates to: MTGATLHLWGHNSPVPDSESFPA*IGQVTK
Trigger: TTTGGTGACTTGACCTATGCAGGCTGGAAAGCTCTC...ACTATCTGGAACTGGAGAATTGTGGCCCCACAGATGTAAAGTGGCACCTGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp GGTGGCACTCAACATCCCAAAACTGGGCATAATTCCCTTTGTCTCTGGGCAAAATACAAAGTCCTCCCCTaGGCAAATCCTGATCTCACA +
Preference number: 4 (lower is better)
Translates to: GGTQHPKTGHNSLCLWAKYKVLP*ANPDLT
Trigger: TGTGAGATCAGGATTTGCCCAGGGGAGGACTTTGTA...TTTTGCCCAGAGACAAAGGGAATTATGCCCAGTTTTGGGATGTTGAGTGCCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp TCAGTTTCATCAACTCCCTTGACATACGGGGGTGCAAAAGATGACAGGTGCCACTGCGATACTGCTGTCTaGAGATTTCATCACCACCAA +
Preference number: 4 (lower is better)
Translates to: SVSSTPLTYGGAKDDRCHCDTAV*RFHHHQ
Trigger: TTGGTGGTGATGAAATCTCCAGACAGCAGTATCGCA...GTGGCACCTGTCATCTTTTGCACCCCCGTATGTCAAGGGAGTTGATGAAACTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp ATGACAGGTGCCACTTTACATCTGTGGGGCCACAATTCTCCAGTTCCAGATAGTATCAAGTGTTCTGGATaGACAGCCCAGCCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: MTGATLHLWGHNSPVPDSIKCSG*TAQPSS
Trigger: TGAAGAAGGCTGGGCTGTCCATCCAGAACACTTGAT...ACTATCTGGAACTGGAGAATTGTGGCCCCACAGATGTAAAGTGGCACCTGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp CTGGGCAAAAATATGATGGAGACCTTTTGGATTCCATGGCCTTCTAGTGTGCCACAGAATCAAGTGTTCTaGATGGACAGCCCAGCCTTC +
Preference number: 4 (lower is better)
Translates to: LGKNMMETFWIPWPSSVPQNQVF*MDSPAF
Trigger: GAAGGCTGGGCTGTCCATCCAGAACACTTGATTCTG...TGGCACACTAGAAGGCCATGGAATCCAAAAGGTCTCCATCATATTTTTGCCCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp TGCCTTCATCTGTTTGGATCACAAGTAAAGCTTCAAATCTGCCCACTGCCTCTGTTAGCAACAGAAGCATaGGCTGAAATGTGGGGTGCA +
Preference number: 4 (lower is better)
Translates to: CLHLFGSQVKLQICPLPLLATEA*AEMWGA
Trigger: TGCACCCCACATTTCAGCTCATGCTTCTGTTGCTAA...CAGAGGCAGTGGGCAGATTTGAAGCTTTACTTGTGATCCAAACAGATGAAGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp CTGGGCAAAAATATGATGGAGACCTTTTGGATTCCATGGCCTTCTAGTGTGCCACGTGTCAGCATCTGCTaGAAACAACCAAGAAGCAAC +
Preference number: 4 (lower is better)
Translates to: LGKNMMETFWIPWPSSVPRVSIC*KQPRSN
Trigger: GTTGCTTCTTGGTTGTTTTCAGCAGATGCTGACACG...TGGCACACTAGAAGGCCATGGAATCCAAAAGGTCTCCATCATATTTTTGCCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp GGTTGTGTAGGTAGCTCGAAAAACATCTTCAGTTTCATCAACTCCCTTGACATAGGGTCCACTGAAAACTaGCTTCCTTGCTCAGCGACC +
Preference number: 4 (lower is better)
Translates to: GCVGSSKNIFSFINSLDIGSTEN*LPCSAT
Trigger: GGTCGCTGAGCAAGGAAGTCAGTTTTCAGTGGACCC...TATGTCAAGGGAGTTGATGAAACTGAAGATGTTTTTCGAGCTACCTACACAACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp ACTTTACATCTGTGGGGCCACAATTCTCCAGTTCCAGATAGTTCTCTGAGGTTCAACTTAATGCCTGGCTaGGATCGACTTCCAAGTTGC +
Preference number: 4 (lower is better)
Translates to: TLHLWGHNSPVPDSSLRFNLMPG*DRLPSC
Trigger: GCAACTTGGAAGTCGATCTCAGCCAGGCATTAAGTT...GAACCTCAGAGAACTATCTGGAACTGGAGAATTGTGGCCCCACAGATGTAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp GATTCACCGATTAGTCGAATAGCAATACTCTTGCCTTCATCTGTTTGGATCACATCCTGCCGAGAGGGATaGCACCCCAAGTCAGAAACT +
Preference number: 4 (lower is better)
Translates to: DSPISRIAILLPSSVWITSCREG*HPKSET
Trigger: AGTTTCTGACTTGGGGTGGCATCCCTCTCGGCAGGA...TGTGATCCAAACAGATGAAGGCAAGAGTATTGCTATTCGACTAATCGGTGAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp TCAGTTTCATCAACTCCCTTGACATACGGGGGTGCAAAAGATGACAGGTGCCACCATCCAACAGGACATTaGCACTTTGTTTTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: SVSSTPLTYGGAKDDRCHHPTGH*HFVFQK
Trigger: CTTCTGGAAAACAAAGTGGCAATGTCCTGTTGGATG...GTGGCACCTGTCATCTTTTGCACCCCCGTATGTCAAGGGAGTTGATGAAACTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp CGAATAGCAATACTCTTGCCTTCATCTGTTTGGATCACAAGTAAAGCTTCAAATGGTGCAGGATTGTGCTaGGTTCCAGAGGCACCCGGA +
Preference number: 4 (lower is better)
Translates to: RIAILLPSSVWITSKASNGAGLC*VPEAPG
Trigger: TCCGGGTGCCTCTGGAACCCAGCACAATCCTGCACC...ATTTGAAGCTTTACTTGTGATCCAAACAGATGAAGGCAAGAGTATTGCTATTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp ATGACAGGTGCCACTTTACATCTGTGGGGCCACAATTCTCCAGTTCCAGATAGTGCTTTCAGAGACACATaGATGGGCTCTTTGGAAAAC +
Preference number: 4 (lower is better)
Translates to: MTGATLHLWGHNSPVPDSAFRDT*MGSLEN
Trigger: GTTTTCCAAAGAGCCCATCCATGTGTCTCTGAAAGC...ACTATCTGGAACTGGAGAATTGTGGCCCCACAGATGTAAAGTGGCACCTGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp CTCTGGTCTGAAGTGCACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTAAGTGAGGAGTTTCTTTaGGCTATGGAAAATAACCCA +
Preference number: 4 (lower is better)
Translates to: LWSEVHRDVDIMSGPQSVSEEFL*AMENNP
Trigger: TGGGTTATTTTCCATAGCCCAAAGAAACTCCTCACT...TACACTTTGAGGGCCCGACATTATATCCACATCCCGGTGCACTTCAGACCAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp CTGGGCAAAAATATGATGGAGACCTTTTGGATTCCATGGCCTTCTAGTGTGCCACTTAAAGCTAGTTTCTaGAGCTGTGTCCTGCCGAGA +
Preference number: 4 (lower is better)
Translates to: LGKNMMETFWIPWPSSVPLKASF*SCVLPR
Trigger: TCTCGGCAGGACACAGCTCCAGAAACTAGCTTTAAG...TGGCACACTAGAAGGCCATGGAATCCAAAAGGTCTCCATCATATTTTTGCCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp CTCTGGTCTGAAGTGCACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTAACCTTGATATCTAGATaGACTTCAATATTCCCAGCA +
Preference number: 4 (lower is better)
Translates to: LWSEVHRDVDIMSGPQSVTLISR*TSIFPA
Trigger: TGCTGGGAATATTGAAGTTCATCTAGATATCAAGGT...TACACTTTGAGGGCCCGACATTATATCCACATCCCGGTGCACTTCAGACCAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp CTGGGCAAAAATATGATGGAGACCTTTTGGATTCCATGGCCTTCTAGTGTGCCACACACACTTCATCAATaGGAGGCTCATCCTGAAATG +
Preference number: 4 (lower is better)
Translates to: LGKNMMETFWIPWPSSVPHTLHQ*EAHPEM
Trigger: CATTTCAGGATGAGCCTCTCATTGATGAAGTGTGTG...TGGCACACTAGAAGGCCATGGAATCCAAAAGGTCTCCATCATATTTTTGCCCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp CGAATAGCAATACTCTTGCCTTCATCTGTTTGGATCACAAGTAAAGCTTCAAATGCAGTGAGGCCCAGGTaGCAGAGGTTTACTCCCAGA +
Preference number: 4 (lower is better)
Translates to: RIAILLPSSVWITSKASNAVRPR*QRFTPR
Trigger: TCTGGGAGTAAACCTCTGCCACCTGGGCCTCACTGC...ATTTGAAGCTTTACTTGTGATCCAAACAGATGAAGGCAAGAGTATTGCTATTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp ACTTTACATCTGTGGGGCCACAATTCTCCAGTTCCAGATAGTTCTCTGAGGTTCGATACATCCATGTTGTaGTGTGACTGTCAGGCAATG +
Preference number: 4 (lower is better)
Translates to: TLHLWGHNSPVPDSSLRFDTSML*CDCQAM
Trigger: CATTGCCTGACAGTCACACCACAACATGGATGTATC...GAACCTCAGAGAACTATCTGGAACTGGAGAATTGTGGCCCCACAGATGTAAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp GTATCTACTTTAATGAGGGCATCTCTGGAGGAGCATGAGTCTTCAGGGTCATTCCTTGCTCAGCGACCTTaGTATCTAGATGAACTTCAA +
Preference number: 4 (lower is better)
Translates to: VSTLMRASLEEHESSGSFLAQRP*YLDELQ
Trigger: TTGAAGTTCATCTAGATATCAAGGTCGCTGAGCAAG...GAATGACCCTGAAGACTCATGCTCCTCCAGAGATGCCCTCATTAAAGTAGATAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp GGTTGTGTAGGTAGCTCGAAAAACATCTTCAGTTTCATCAACTCCCTTGACATAGCACTGGAGGAAGGCTaGAGAAATTCTCGGCTACAA +
Preference number: 4 (lower is better)
Translates to: GCVGSSKNIFSFINSLDIALEEG*RNSRLQ
Trigger: TTGTAGCCGAGAATTTCTTCAGCCTTCCTCCAGTGC...TATGTCAAGGGAGTTGATGAAACTGAAGATGTTTTTCGAGCTACCTACACAACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp CACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTACTTGGAGTGTCTAATACAATTTTTCTGGCATaGTACATCCATGTTGTGGTG +
Preference number: 4 (lower is better)
Translates to: HRDVDIMSGPQSVLGVSNTIFLA*YIHVVV
Trigger: CACCACAACATGGATGTATCATGCCAGAAAAATTGT...ATTAGACACTCCAAGTACACTTTGAGGGCCCGACATTATATCCACATCCCGGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp GGTTGTGTAGGTAGCTCGAAAAACATCTTCAGTTTCATCAACTCCCTTGACATAGCAGTAATGTCAGCATaGGGAGCAGCTTTCAGAGAC +
Preference number: 4 (lower is better)
Translates to: GCVGSSKNIFSFINSLDIAVMSA*GAAFRD
Trigger: GTCTCTGAAAGCTGCTCCGCATGCTGACATTACTGC...TATGTCAAGGGAGTTGATGAAACTGAAGATGTTTTTCGAGCTACCTACACAACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp GGTGGCACTCAACATCCCAAAACTGGGCATAATTCCCTTTGTCTCTGGGCAAAAGATCGACTTCCAAGTTaGTTGATTTCAAGTTTAGCC +
Preference number: 4 (lower is better)
Translates to: GGTQHPKTGHNSLCLWAKDRLPS*LISSLA
Trigger: GGCTAAACTTGAAATCAAGCAACTTGGAAGTCGATC...TTTTGCCCAGAGACAAAGGGAATTATGCCCAGTTTTGGGATGTTGAGTGCCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp GGAGGAAAAATCACTGTCTTGCTTCTAATTTCAACTTTTGTGGAAGGTGGTTTTCTGACTTGCAGCCAGTaGTCAGTGGGGTTGAGGACA +
Preference number: 4 (lower is better)
Translates to: GGKITVLLLISTFVEGGFLTCSQ*SVGLRT
Trigger: TGTCCTCAACCCCACTGACCACTGGCTGCAAGTCAG...AAAACCACCTTCCACAAAAGTTGAAATTAGAAGCAAGACAGTGATTTTTCCTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp AGGTTCTTTAGCAGGGTGGCACTCAACATCCCAAAACTGGGCATAATTCCCTTTCTTCTATATCCACTCTaGCCAAGAATTCTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: RFFSRVALNIPKLGIIPFLLYPL*PRILLL
Trigger: CAGCAGAAGAATTCTTGGCCAGAGTGGATATAGAAG...AAAGGGAATTATGCCCAGTTTTGGGATGTTGAGTGCCACCCTGCTAAAGAACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp CACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTACTTGGAGTGTCTAATTTTTGGATTCAGCACTaGAGGAAGGCTGAAGAAATT +
Preference number: 4 (lower is better)
Translates to: HRDVDIMSGPQSVLGVSNFWIQH*RKAEEI
Trigger: AATTTCTTCAGCCTTCCTCCAGTGCTGAATCCAAAA...ATTAGACACTCCAAGTACACTTTGAGGGCCCGACATTATATCCACATCCCGGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp CACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTACTTGGAGTGTCTAATATCTCTTCTGTAGCTTaGGGTCTTATCACAACTTTA +
Preference number: 4 (lower is better)
Translates to: HRDVDIMSGPQSVLGVSNISSVA*GLITTL
Trigger: TAAAGTTGTGATAAGACCTCAAGCTACAGAAGAGAT...ATTAGACACTCCAAGTACACTTTGAGGGCCCGACATTATATCCACATCCCGGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp TGCCTTCATCTGTTTGGATCACAAGTAAAGCTTCAAATCTGCCCACTGCCTCTGCATAGGAAATGGCTTTaGTGTACTAAGCAAGTTCTG +
Preference number: 4 (lower is better)
Translates to: CLHLFGSQVKLQICPLPLHRKWL*CTKQVL
Trigger: CAGAACTTGCTTAGTACAGCAAAGCCATTTCCTATG...CAGAGGCAGTGGGCAGATTTGAAGCTTTACTTGTGATCCAAACAGATGAAGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp GATTCACCGATTAGTCGAATAGCAATACTCTTGCCTTCATCTGTTTGGATCACAAACAAATACACAGTCTaGAAATCCCGAGGGGCATGG +
Preference number: 4 (lower is better)
Translates to: DSPISRIAILLPSSVWITNKYTV*KSRGAW
Trigger: CCATGCCCCTCGGGATTTGCAGACTGTGTATTTGTT...TGTGATCCAAACAGATGAAGGCAAGAGTATTGCTATTCGACTAATCGGTGAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp ATGACAGGTGCCACTTTACATCTGTGGGGCCACAATTCTCCAGTTCCAGATAGTAATAGTCGCAAATTTTaGGCTGTAGTTGTAGAACTG +
Preference number: 4 (lower is better)
Translates to: MTGATLHLWGHNSPVPDSNSRKF*AVVVEL
Trigger: CAGTTCTACAACTACAGCCCAAAATTTGCGACTATT...ACTATCTGGAACTGGAGAATTGTGGCCCCACAGATGTAAAGTGGCACCTGTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp ACTTTACATCTGTGGGGCCACAATTCTCCAGTTCCAGATAGTTCTCTGAGGTTCTGGAGAAATTACTTTTaGATTCAGCACTGGAGGAAG +
Preference number: 4 (lower is better)
Translates to: TLHLWGHNSPVPDSSLRFWRNYF*IQHWRK
Trigger: CTTCCTCCAGTGCTGAATCCAAAAGTAATTTCTCCA...GAACCTCAGAGAACTATCTGGAACTGGAGAATTGTGGCCCCACAGATGTAAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp TGCCTTCATCTGTTTGGATCACAAGTAAAGCTTCAAATCTGCCCACTGCCTCTGTACAAATGGTACCTCTaGATTCTCCAATTACTGACA +
Preference number: 4 (lower is better)
Translates to: CLHLFGSQVKLQICPLPLYKWYL*ILQLLT
Trigger: TGTCAGTAATTGGAGAATTCAGAGGTACCATTTGTA...CAGAGGCAGTGGGCAGATTTGAAGCTTTACTTGTGATCCAAACAGATGAAGGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp GGAGGAAAAATCACTGTCTTGCTTCTAATTTCAACTTTTGTGGAAGGTGGTTTTAGAAAAGGAGGGCCTTaGGGGCCTTTAACCGGTAAA +
Preference number: 4 (lower is better)
Translates to: GGKITVLLLISTFVEGGFRKGGP*GPLTGK
Trigger: TTTACCGGTTAAAGGCCCTCAAGGCCCTCCTTTTCT...AAAACCACCTTCCACAAAAGTTGAAATTAGAAGCAAGACAGTGATTTTTCCTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp CACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTACTTGGAGTGTCTAATCATGGATACTTTTTCTaGATTCTGACCTGGAATTTT +
Preference number: 4 (lower is better)
Translates to: HRDVDIMSGPQSVLGVSNHGYFF*ILTWNF
Trigger: AAAATTCCAGGTCAGAATGCAGAAAAAGTATCCATG...ATTAGACACTCCAAGTACACTTTGAGGGCCCGACATTATATCCACATCCCGGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp CTGGGCAAAAATATGATGGAGACCTTTTGGATTCCATGGCCTTCTAGTGTGCCATTCTGCATTCTGACCTaGAATTTTGTCTCTTGGTTT +
Preference number: 4 (lower is better)
Translates to: LGKNMMETFWIPWPSSVPFCILT*NFVSWF
Trigger: AAACCAAGAGACAAAATTCCAGGTCAGAATGCAGAA...TGGCACACTAGAAGGCCATGGAATCCAAAAGGTCTCCATCATATTTTTGCCCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp TGCCTTCATCTGTTTGGATCACAAGTAAAGCTTCAAATCTGCCCACTGCCTCTGAATAATCAATCTGATTaGCACAGTAGCATGTGTCCT +
Preference number: 4 (lower is better)
Translates to: CLHLFGSQVKLQICPLPLNNQSD*HSSMCP
Trigger: AGGACACATGCTACTGTGCCAATCAGATTGATTATT...CAGAGGCAGTGGGCAGATTTGAAGCTTTACTTGTGATCCAAACAGATGAAGGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
3UTR CAA 72 bp CCAAGGGATTCACCGATTAGTCGAATAGCAATACTCTaGCCTTCATCTGTTTGGATCACAAGTAAAGCTTCA +
Preference number: 4 (lower is better)
Translates to: PRDSPISRIAIL*PSSVWITSKAS
Trigger: TGAAGCTTTACTTGTGATCCAAACAGATGAAGGCAAGAGTATTGCTATTCGACTAATCGGTGAATCCCTTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR GCA 90 bp GATTCACCGATTAGTCGAATAGCAATACTCTTGCCTTCATCTGTTTGGATCACATGTTCTGGAAGGATCTaGTTTAGGATTCCTGGTGTA +
Preference number: 4 (lower is better)
Translates to: DSPISRIAILLPSSVWITCSGRI*FRIPGV
Trigger: TACACCAGGAATCCTAAAGCAGATCCTTCCAGAACA...TGTGATCCAAACAGATGAAGGCAAGAGTATTGCTATTCGACTAATCGGTGAATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp CTGGGCAAAAATATGATGGAGACCTTTTGGATTCCATGGCCTTCTAGTGTGCCATCAGAAACTGCTTATTaGACAGTATCAGTGGAATAT +
Preference number: 4 (lower is better)
Translates to: LGKNMMETFWIPWPSSVPSETAY*TVSVEY
Trigger: ATATTCCACTGATACTGTCCAATAAGCAGTTTCTGA...TGGCACACTAGAAGGCCATGGAATCCAAAAGGTCTCCATCATATTTTTGCCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp CTGGGCAAAAATATGATGGAGACCTTTTGGATTCCATGGCCTTCTAGTGTGCCATCCATATCCAGACAATaGTATCATAAACTTAATGCC +
Preference number: 4 (lower is better)
Translates to: LGKNMMETFWIPWPSSVPSISRQ*YHKLNA
Trigger: GGCATTAAGTTTATGATACCATTGTCTGGATATGGA...TGGCACACTAGAAGGCCATGGAATCCAAAAGGTCTCCATCATATTTTTGCCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp GGTTGTGTAGGTAGCTCGAAAAACATCTTCAGTTTCATCAACTCCCTTGACATATGGAATTTTGTCTCTTaGTTTTTCCACAGCTTGTTC +
Preference number: 4 (lower is better)
Translates to: GCVGSSKNIFSFINSLDIWNFVS*FFHSLF
Trigger: GAACAAGCTGTGGAAAAACCAAGAGACAAAATTCCA...TATGTCAAGGGAGTTGATGAAACTGAAGATGTTTTTCGAGCTACCTACACAACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CCA 90 bp GGAGGAAAAATCACTGTCTTGCTTCTAATTTCAACTTTTGTGGAAGGTGGTTTTCATAAACTTAATGCCTaGCTGAGATCGACTTCCAAG +
Preference number: 4 (lower is better)
Translates to: GGKITVLLLISTFVEGGFHKLNA*LRSTSK
Trigger: CTTGGAAGTCGATCTCAGCCAGGCATTAAGTTTATG...AAAACCACCTTCCACAAAAGTTGAAATTAGAAGCAAGACAGTGATTTTTCCTCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp CGAATAGCAATACTCTTGCCTTCATCTGTTTGGATCACAAGTAAAGCTTCAAATGAATTCTCCAATTACTaGCAGGGTAATTTTCCGCAT +
Preference number: 4 (lower is better)
Translates to: RIAILLPSSVWITSKASNEFSNY*QGNFPH
Trigger: ATGCGGAAAATTACCCTGTCAGTAATTGGAGAATTC...ATTTGAAGCTTTACTTGTGATCCAAACAGATGAAGGCAAGAGTATTGCTATTCG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR TCA 90 bp CGAATAGCAATACTCTTGCCTTCATCTGTTTGGATCACAAGTAAAGCTTCAAATACTTTTTCTGCATTCTaGCCTGGAATTTTGTCTCTT +
Preference number: 4 (lower is better)
Translates to: RIAILLPSSVWITSKASNTFSAF*PGILSL
Trigger: AAGAGACAAAATTCCAGGTCAGAATGCAGAAAAAGT...ATTTGAAGCTTTACTTGTGATCCAAACAGATGAAGGCAAGAGTATTGCTATTCG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS CCA 90 bp TGCCTACACAGCAAGCGTGAGGGAACCTCAGCTCCTCGGGCACTCTaGCATTCCCAAACGCAGGCATCATCCCTGAGTCCCGTGGCTCAG +
Preference number: 5 (lower is better)
Translates to: CLHSKREGTSAPRAL*HSQTQASSLSPVAQ
Trigger: CTGAGCCACGGGACTCAGGGATGATGCCTGCGTTTGGGAATGCCAGAGTGCCCGAGGAGCTGAGGTTCCCTCACGCTTGCTGTGTAGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS GCA 90 bp CAGCAGCAGGATACGGAGAATACCCTGAAATCCCACAGACCTGCATaGCTGCATGGCACTGTGACAAGGTGGCATTCCCAGATGGGGCGC +
Preference number: 5 (lower is better)
Translates to: QQQDTENTLKSHRPA*LHGTVTRWHSQMGR
Trigger: GCGCCCCATCTGGGAATGCCACCTTGTCACAGTGCCATGCAGGCATGCAGGTCTGTGGGATTTCAGGGTATTCTCCGTATCCTGCTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS TCA 90 bp AGGACACTAAGGAGGGTCTGTGAAGCAATGCCTACACAGCAAGCGTaGGGGAACCTCAGCTCCTCGGGCACTCTGGCATTCCCAAACGCA +
Preference number: 5 (lower is better)
Translates to: RTLRRVCEAMPTQQA*GNLSSSGTLAFPNA
Trigger: TGCGTTTGGGAATGCCAGAGTGCCCGAGGAGCTGAGGTTCCCTCACGCTTGCTGTGTAGGCATTGCTTCACAGACCCTCCTTAGTGTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS TCA 90 bp TTGCAGCCAGTGGTCAGTGGGGTTGAGGACACTAAGGAGGGTCTGTaGAGCAATGCCTACACAGCAAGCGTGAGGGAACCTCAGCTCCTC +
Preference number: 5 (lower is better)
Translates to: LQPVVSGVEDTKEGL*SNAYTASVREPQLL
Trigger: GAGGAGCTGAGGTTCCCTCACGCTTGCTGTGTAGGCATTGCTTCACAGACCCTCCTTAGTGTCCTCAACCCCACTGACCACTGGCTGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS GCA 90 bp GGTGCAGCAGCAGGATACGGAGAATACCCTGAAATCCCACAGACCTaGATGCCTGCATGGCACTGTGACAAGGTGGCATTCCCAGATGGG +
Preference number: 5 (lower is better)
Translates to: GAAAGYGEYPEIPQT*MPAWHCDKVAFPDG
Trigger: CCCATCTGGGAATGCCACCTTGTCACAGTGCCATGCAGGCATGCAGGTCTGTGGGATTTCAGGGTATTCTCCGTATCCTGCTGCTGCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CCA 90 bp CTGAAATCCCACAGACCTGCATGCCTGCATGGCACTGTGACAAGGTaGCATTCCCAGATGGGGCGCCAGGAGCTATGTATAGAGAGTGCC +
Preference number: 5 (lower is better)
Translates to: LKSHRPACLHGTVTR*HSQMGRQELCIESA
Trigger: GGCACTCTCTATACATAGCTCCTGGCGCCCCATCTGGGAATGCCACCTTGTCACAGTGCCATGCAGGCATGCAGGTCTGTGGGATTTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS GCA 90 bp ATACACAGTCTGCAAATCCCGAGGGGCATGGATCCTAGCTACTCCTaGTCGTGCTCGGAGGGCCACGCTTCTCAGAACAGGAATAGGGTT +
Preference number: 5 (lower is better)
Translates to: IHSLQIPRGMDPSYS*SCSEGHASQNRNRV
Trigger: AACCCTATTCCTGTTCTGAGAAGCGTGGCCCTCCGAGCACGAGCAGGAGTAGCTAGGATCCATGCCCCTCGGGATTTGCAGACTGTGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CCA 90 bp TTCACATCAGCCAACAAATACACAGTCTGCAAATCCCGAGGGGCATaGATCCTAGCTACTCCTGCTCGTGCTCGGAGGGCCACGCTTCTC +
Preference number: 5 (lower is better)
Translates to: FTSANKYTVCKSRGA*ILATPARARRATLL
Trigger: GAGAAGCGTGGCCCTCCGAGCACGAGCAGGAGTAGCTAGGATCCATGCCCCTCGGGATTTGCAGACTGTGTATTTGTTGGCTGATGTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS TCA 90 bp GCAGGACACACAGCAGGCTGGTTCATCACCTTAGCAACAGAAGCATaGGCTGAAATGTGGGGTGCAGGATTGTGCTGGGTTCCAGAGGCA +
Preference number: 5 (lower is better)
Translates to: AGHTAGWFITLATEA*AEMWGAGLCWVPEA
Trigger: TGCCTCTGGAACCCAGCACAATCCTGCACCCCACATTTCAGCTCATGCTTCTGTTGCTAAGGTGATGAACCAGCCTGCTGTGTGTCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CCA 90 bp GTGTCCTGCCGAGAGGGATGCCACCCCAAGTCAGAAACTGCTTATTaGACAGTATCAGTGGAATATCTGAGCAGTGAGGCCCAGGTGGCA +
Preference number: 5 (lower is better)
Translates to: VSCREGCHPKSETAY*TVSVEYLSSEAQVA
Trigger: TGCCACCTGGGCCTCACTGCTCAGATATTCCACTGATACTGTCCAATAAGCAGTTTCTGACTTGGGGTGGCATCCCTCTCGGCAGGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS-3UTR CAA 90 bp CTCTGGTCTGAAGTGCACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTACTTGTCCAGGAGAGCTaGGCCAATCAGGTCCTGCTC +
Preference number: 5 (lower is better)
Translates to: LWSEVHRDVDIMSGPQSVLVQES*ANQVLL
Trigger: GAGCAGGACCTGATTGGCCAAGCTCTCCTGGACAAG...TACACTTTGAGGGCCCGACATTATATCCACATCCCGGTGCACTTCAGACCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CAA 90 bp TCAGTTTCATCAACTCCCTTGACATACGGGGGTGCAAAAGATGACAGGTGCCACCAGTGGTCAGTGGGGTaGAGGACACTAAGGAGGGTC +
Preference number: 5 (lower is better)
Translates to: SVSSTPLTYGGAKDDRCHQWSVG*RTLRRV
Trigger: GACCCTCCTTAGTGTCCTCAACCCCACTGACCACTG...GTGGCACCTGTCATCTTTTGCACCCCCGTATGTCAAGGGAGTTGATGAAACTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS CCA 90 bp GTACTCTGGGGTTCCTCAGTAGTGAGTCACTCCTGGACGCTGCAATaGAAACTGAGGCAGCTTTCTCACTGTTCCGCACATCCAGTAAAG +
Preference number: 5 (lower is better)
Translates to: VLWGSSVVSHSWTLQ*KLRQLSHCSAHPVK
Trigger: CTTTACTGGATGTGCGGAACAGTGAGAAAGCTGCCTCAGTTTCCATTGCAGCGTCCAGGAGTGACTCACTACTGAGGAACCCCAGAGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS-3UTR CAA 90 bp TCAGTTTCATCAACTCCCTTGACATACGGGGGTGCAAAAGATGACAGGTGCCACTGGTTTAGAGCTGGCTaGTCCAGGAGAGCTTGGCCA +
Preference number: 5 (lower is better)
Translates to: SVSSTPLTYGGAKDDRCHWFRAG*SRRAWP
Trigger: TGGCCAAGCTCTCCTGGACAAGCCAGCTCTAAACCA...GTGGCACCTGTCATCTTTTGCACCCCCGTATGTCAAGGGAGTTGATGAAACTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CAA 90 bp CACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTACTTGGAGTGTCTAATATGTGGGGTGCAGGATaGTGCTGGGTTCCAGAGGCA +
Preference number: 5 (lower is better)
Translates to: HRDVDIMSGPQSVLGVSNMWGAG*CWVPEA
Trigger: TGCCTCTGGAACCCAGCACAATCCTGCACCCCACAT...ATTAGACACTCCAAGTACACTTTGAGGGCCCGACATTATATCCACATCCCGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS TCA 90 bp GAGTGCTTTCATCATGGTAACAAGCTGGGCAGGATCAGTGCTCACTaGCACGTCTGCGAAGGCGGAAGCAATGGTGCTTATTCTAAGTAC +
Preference number: 5 (lower is better)
Translates to: ECFHHGNKLGRISAH*HVCEGGSNGAYSKY
Trigger: GTACTTAGAATAAGCACCATTGCTTCCGCCTTCGCAGACGTGTCAGTGAGCACTGATCCTGCCCAGCTTGTTACCATGATGAAAGCACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS-3UTR CAA 90 bp CACCGGGATGTGGATATAATGTCGGGCCCTCAAAGTGTACTTGGAGTGTCTAATATCCAGAGGCAAGACTaGGTCCTAAGTACAGCCCAG +
Preference number: 5 (lower is better)
Translates to: HRDVDIMSGPQSVLGVSNIQRQD*VLSTAQ
Trigger: CTGGGCTGTACTTAGGACCAAGTCTTGCCTCTGGAT...ATTAGACACTCCAAGTACACTTTGAGGGCCCGACATTATATCCACATCCCGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CAA 90 bp TCAGTTTCATCAACTCCCTTGACATACGGGGGTGCAAAAGATGACAGGTGCCACATCCTGATCTCACAATaGCTGGTCAGCCGCTCTTCT +
Preference number: 5 (lower is better)
Translates to: SVSSTPLTYGGAKDDRCHILISQ*LVSRSS
Trigger: AGAAGAGCGGCTGACCAGCAATTGTGAGATCAGGAT...GTGGCACCTGTCATCTTTTGCACCCCCGTATGTCAAGGGAGTTGATGAAACTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS CCA 90 bp CTGACCTGGAATTTTGTCTCTTGGTTTTTCCACAGCTTGTTCCCTTaGTGGAGTAGGACTGGCTCGGACAATTGTGGTACTCAGCTCACT +
Preference number: 5 (lower is better)
Translates to: LTWNFVSWFFHSLFP*WSRTGSDNCGTQLT
Trigger: AGTGAGCTGAGTACCACAATTGTCCGAGCCAGTCCTACTCCACCAAGGGAACAAGCTGTGGAAAAACCAAGAGACAAAATTCCAGGTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS-3UTR CAA 90 bp GGTGGCACTCAACATCCCAAAACTGGGCATAATTCCCTTTGTCTCTGGGCAAAAACATGGATGGGCTCTTaGGAAAACGTGAAACAGCGC +
Preference number: 5 (lower is better)
Translates to: GGTQHPKTGHNSLCLWAKTWMGS*ENVKQR
Trigger: GCGCTGTTTCACGTTTTCCAAAGAGCCCATCCATGT...TTTTGCCCAGAGACAAAGGGAATTATGCCCAGTTTTGGGATGTTGAGTGCCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS TCA 90 bp TGCGAAGTTTCCAGAAATTTCACTGGGAGAAGAATGACTGAGTGGTaGCAGCCTGAAGCTCTCCTCGTCTTGAAAGCCAGATCTACCACT +
Preference number: 5 (lower is better)
Translates to: CEVSRNFTGRRMTEW*QPEALLVLKARSTT
Trigger: AGTGGTAGATCTGGCTTTCAAGACGAGGAGAGCTTCAGGCTGTCACCACTCAGTCATTCTTCTCCCAGTGAAATTTCTGGAAACTTCGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS GCA 90 bp CAGCACACAGCCTCTTCACCACAATCTCCTCTCCTCCACATCCTCTaGTTTGATTTGGAACAATATCCTTCAAATTGTGTGCCGCTTCCT +
Preference number: 5 (lower is better)
Translates to: QHTASSPQSPLLHIL*FDLEQYPSNCVPLP
Trigger: AGGAAGCGGCACACAATTTGAAGGATATTGTTCCAAATCAAAGCAGAGGATGTGGAGGAGAGGAGATTGTGGTGAAGAGGCTGTGTGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS GCA 90 bp TGTTTCTTAAAGCTAGTTTCTGGAGCTGTGTCCTGCCGAGAGGGATaGCACCCCAAGTCAGAAACTGCTTATTGGACAGTATCAGTGGAA +
Preference number: 5 (lower is better)
Translates to: CFLKLVSGAVSCREG*HPKSETAYWTVSVE
Trigger: TTCCACTGATACTGTCCAATAAGCAGTTTCTGACTTGGGGTGGCATCCCTCTCGGCAGGACACAGCTCCAGAAACTAGCTTTAAGAAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS-3UTR CAA 90 bp CTGGGCAAAAATATGATGGAGACCTTTTGGATTCCATGGCCTTCTAGTGTGCCATGGTTTTTCCACAGCTaGTTCCCTTGGTGGAGTAGG +
Preference number: 5 (lower is better)
Translates to: LGKNMMETFWIPWPSSVPWFFHS*FPWWSR
Trigger: CCTACTCCACCAAGGGAACAAGCTGTGGAAAAACCA...TGGCACACTAGAAGGCCATGGAATCCAAAAGGTCTCCATCATATTTTTGCCCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS GCA 90 bp TGTAACCATAGGAAATGGCTTTGCTGTACTAAGCAAGTTCTGGGGTaGAGCAGTAGAGCACAGGTTGTAAAGAGAAGAGGGAGCCATCAA +
Preference number: 5 (lower is better)
Translates to: CNHRKWLCCTKQVLG*SSRAQVVKRRGSHQ
Trigger: TTGATGGCTCCCTCTTCTCTTTACAACCTGTGCTCTACTGCTGCACCCCAGAACTTGCTTAGTACAGCAAAGCCATTTCCTATGGTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS GCA 90 bp CTGGAAGGATCTGCTTTAGGATTCCTGGTGTATGCATCTGAGCTCTaGGATACTGCTGTCTGGAGATTTCATCACCACCAAACATGTAGA +
Preference number: 5 (lower is better)
Translates to: LEGSALGFLVYASEL*DTAVWRFHHHQTCR
Trigger: TCTACATGTTTGGTGGTGATGAAATCTCCAGACAGCAGTATCGCAGAGCTCAGATGCATACACCAGGAATCCTAAAGCAGATCCTTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS-3UTR CAA 90 bp TGCCTTCATCTGTTTGGATCACAAGTAAAGCTTCAAATCTGCCCACTGCCTCTGCACTGGAGCCAGATGTaGAATCCATCATCTTACCAG +
Preference number: 5 (lower is better)
Translates to: CLHLFGSQVKLQICPLPLHWSQM*NPSSYQ
Trigger: CTGGTAAGATGATGGATTCAACATCTGGCTCCAGTG...CAGAGGCAGTGGGCAGATTTGAAGCTTTACTTGTGATCCAAACAGATGAAGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CAA 90 bp TCAGTTTCATCAACTCCCTTGACATACGGGGGTGCAAAAGATGACAGGTGCCACGTCCTATTTATTAACTaGAGTGGGAGAGCTTTCCAG +
Preference number: 5 (lower is better)
Translates to: SVSSTPLTYGGAKDDRCHVLFIN*SGRAFQ
Trigger: CTGGAAAGCTCTCCCACTCAAGTTAATAAATAGGAC...GTGGCACCTGTCATCTTTTGCACCCCCGTATGTCAAGGGAGTTGATGAAACTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS GCA 90 bp CTGGCAGTTAGTGTAATGTCATCTTCATCCACCTGGGAATTTCTCTaGAGTTCTTCAGCCTTGAGCATAACCGATCCTTCACTTAGCTGT +
Preference number: 5 (lower is better)
Translates to: LAVSVMSSSSTWEFL*SSSALSITDPSLSC
Trigger: ACAGCTAAGTGAAGGATCGGTTATGCTCAAGGCTGAAGAACTGCAGAGAAATTCCCAGGTGGATGAAGATGACATTACACTAACTGCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CCA 90 bp TTAGGATTCCTGGTGTATGCATCTGAGCTCTGCGATACTGCTGTCTaGAGATTTCATCACCACCAAACATGTAGACAGTTAACAGCTCTG +
Preference number: 5 (lower is better)
Translates to: LGFLVYASELCDTAV*RFHHHQTCRQLTAL
Trigger: CAGAGCTGTTAACTGTCTACATGTTTGGTGGTGATGAAATCTCCAGACAGCAGTATCGCAGAGCTCAGATGCATACACCAGGAATCCTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS-3UTR CAA 90 bp ATGACAGGTGCCACTTTACATCTGTGGGGCCACAATTCTCCAGTTCCAGATAGTCGACTTCCAAGTTGCTaGATTTCAAGTTTAGCCAAC +
Preference number: 5 (lower is better)
Translates to: MTGATLHLWGHNSPVPDSRLPSC*ISSLAN
Trigger: GTTGGCTAAACTTGAAATCAAGCAACTTGGAAGTCG...ACTATCTGGAACTGGAGAATTGTGGCCCCACAGATGTAAAGTGGCACCTGTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CAA 90 bp ATGACAGGTGCCACTTTACATCTGTGGGGCCACAATTCTCCAGTTCCAGATAGTCTGGAATTTTGTCTCTaGGTTTTTCCACAGCTTGTT +
Preference number: 5 (lower is better)
Translates to: MTGATLHLWGHNSPVPDSLEFCL*VFPQLV
Trigger: AACAAGCTGTGGAAAAACCAAGAGACAAAATTCCAG...ACTATCTGGAACTGGAGAATTGTGGCCCCACAGATGTAAAGTGGCACCTGTCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CAA 90 bp ATGACAGGTGCCACTTTACATCTGTGGGGCCACAATTCTCCAGTTCCAGATAGTAGATCGACTTCCAAGTaGCTTGATTTCAAGTTTAGC +
Preference number: 5 (lower is better)
Translates to: MTGATLHLWGHNSPVPDSRSTSK*LDFKFS
Trigger: GCTAAACTTGAAATCAAGCAACTTGGAAGTCGATCT...ACTATCTGGAACTGGAGAATTGTGGCCCCACAGATGTAAAGTGGCACCTGTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CAA 90 bp GTATCTACTTTAATGAGGGCATCTCTGGAGGAGCATGAGTCTTCAGGGTCATTCACATCCAACAGGACATaGCCACTTTGTTTTCCAGAA +
Preference number: 5 (lower is better)
Translates to: VSTLMRASLEEHESSGSFTSNRT*PLCFPE
Trigger: TTCTGGAAAACAAAGTGGCAATGTCCTGTTGGATGT...GAATGACCCTGAAGACTCATGCTCCTCCAGAGATGCCCTCATTAAAGTAGATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CAA 90 bp GTATCTACTTTAATGAGGGCATCTCTGGAGGAGCATGAGTCTTCAGGGTCATTCGGAAACATCCAGTTTTaGCCAAATCACAAGAGGAAG +
Preference number: 5 (lower is better)
Translates to: VSTLMRASLEEHESSGSFGNIQF*PNHKRK
Trigger: CTTCCTCTTGTGATTTGGCAAAAACTGGATGTTTCC...GAATGACCCTGAAGACTCATGCTCCTCCAGAGATGCCCTCATTAAAGTAGATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS TCA 90 bp ATCTTACCAGCTTCCAAGGGTTCCCTACTTTCGGAAGAAATATCTTaGCTGGATGTAAAGTTAGGTTCTCCATCTTCAAATCCGGTCCTC +
Preference number: 5 (lower is better)
Translates to: ILPASKGSLLSEEIS*LDVKLGSPSSNPVL
Trigger: GAGGACCGGATTTGAAGATGGAGAACCTAACTTTACATCCAGTCAAGATATTTCTTCCGAAAGTAGGGAACCCTTGGAAGCTGGTAAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS TCA 90 bp TCCGTTATCACAGTGTATGTAGATCAAACCAGTCCATGGGCACACTaGCTCTTTTGTGGACACGGAAAAATTAGGACTCACGAGAATTTG +
Preference number: 5 (lower is better)
Translates to: SVITVYVDQTSPWAH*LFCGHGKIRTHENL
Trigger: CAAATTCTCGTGAGTCCTAATTTTTCCGTGTCCACAAAAGAGTCAGTGTGCCCATGGACTGGTTTGATCTACATACACTGTGATAACGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CCA 90 bp CACGAGAATTTGTATTTTACTCTCTGGCATGATACATCCATGTTGTaGTGTGACTGTCAGGCAATGTGCAGGCCAGTACAGCTCAAATTT +
Preference number: 5 (lower is better)
Translates to: HENLYFTLWHDTSML*CDCQAMCRPVQLKF
Trigger: AAATTTGAGCTGTACTGGCCTGCACATTGCCTGACAGTCACACCACAACATGGATGTATCATGCCAGAGAGTAAAATACAAATTCTCGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CCA 90 bp GGACACGGAAAAATTAGGACTCACGAGAATTTGTATTTTACTCTCTaGCATGATACATCCATGTTGTGGTGTGACTGTCAGGCAATGTGC +
Preference number: 5 (lower is better)
Translates to: GHGKIRTHENLYFTL*HDTSMLWCDCQAMC
Trigger: GCACATTGCCTGACAGTCACACCACAACATGGATGTATCATGCCAGAGAGTAAAATACAAATTCTCGTGAGTCCTAATTTTTCCGTGTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS-3UTR CAA 90 bp GGTGGCACTCAACATCCCAAAACTGGGCATAATTCCCTTTGTCTCTGGGCAAAATATCTCTTCTGTAGCTaGAGGTCTTATCACAACTTT +
Preference number: 5 (lower is better)
Translates to: GGTQHPKTGHNSLCLWAKYLFCS*RSYHNF
Trigger: AAAGTTGTGATAAGACCTCAAGCTACAGAAGAGATA...TTTTGCCCAGAGACAAAGGGAATTATGCCCAGTTTTGGGATGTTGAGTGCCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CAA 90 bp CTGGGCAAAAATATGATGGAGACCTTTTGGATTCCATGGCCTTCTAGTGTGCCAGTCAGAAACTGCTTATaGGACAGTATCAGTGGAATA +
Preference number: 5 (lower is better)
Translates to: LGKNMMETFWIPWPSSVPVRNCL*DSISGI
Trigger: TATTCCACTGATACTGTCCAATAAGCAGTTTCTGAC...TGGCACACTAGAAGGCCATGGAATCCAAAAGGTCTCCATCATATTTTTGCCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS-3UTR CAA 90 bp GATTCACCGATTAGTCGAATAGCAATACTCTTGCCTTCATCTGTTTGGATCACACATGATACATCCATGTaGTGGTGTGACTGTCAGGCA +
Preference number: 5 (lower is better)
Translates to: DSPISRIAILLPSSVWITHDTSM*WCDCQA
Trigger: TGCCTGACAGTCACACCACAACATGGATGTATCATG...TGTGATCCAAACAGATGAAGGCAAGAGTATTGCTATTCGACTAATCGGTGAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS TCA 90 bp GAGTCACTGGAGAAATTACTTTTGGATTCAGCACTGGAGGAAGGCTaGAGAAATTCTCGGCTACAAATGGTACCTCTGAATTCTCCAATT +
Preference number: 5 (lower is better)
Translates to: ESLEKLLLDSALEEG*RNSRLQMVPLNSPI
Trigger: AATTGGAGAATTCAGAGGTACCATTTGTAGCCGAGAATTTCTTCAGCCTTCCTCCAGTGCTGAATCCAAAAGTAATTTCTCCAGTGACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS TCA 90 bp AAGAAATTCTCGGCTACAAATGGTACCTCTGAATTCTCCAATTACTaGCAGGGTAATTTTCCGCATGCTTCCATAGAAGAGCTCAATGTC +
Preference number: 5 (lower is better)
Translates to: KKFSATNGTSEFSNY*QGNFPHASIEELNV
Trigger: GACATTGAGCTCTTCTATGGAAGCATGCGGAAAATTACCCTGTCAGTAATTGGAGAATTCAGAGGTACCATTTGTAGCCGAGAATTTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS-3UTR CAA 90 bp GGAGGAAAAATCACTGTCTTGCTTCTAATTTCAACTTTTGTGGAAGGTGGTTTTGCAAGGGATGCTTTGTaGAGGAATTCACATCAGCCA +
Preference number: 5 (lower is better)
Translates to: GGKITVLLLISTFVEGGFARDAL*RNSHQP
Trigger: TGGCTGATGTGAATTCCTCAACAAAGCATCCCTTGC...AAAACCACCTTCCACAAAAGTTGAAATTAGAAGCAAGACAGTGATTTTTCCTCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS TCA 90 bp ATTGTGTGCCGCTTCCTTCTCATTTCTCCAGGCATGAGAATAAAGTaGCATCACATTATCTACCTGCATTTTATTATCGACAGTACCTAC +
Preference number: 5 (lower is better)
Translates to: IVCRFLLISPGMRIK*HHIIYLHFIIDSTY
Trigger: GTAGGTACTGTCGATAATAAAATGCAGGTAGATAATGTGATGTCACTTTATTCTCATGCCTGGAGAAATGAGAAGGAAGCGGCACACAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 90 bp ATTTTCTGCACAGAAAATAGCAGCTGTAGTTTCTTCTGCTTCCCTTaGATTAGTAGCACAAACGTTCACCATACTCCTGTCTTGAACAGT +
Preference number: 5 (lower is better)
Translates to: IFCTENSSCSFFCFP*ISSTNVHHTPVLNS
Trigger: ACTGTTCAAGACAGGAGTATGGTGAACGTTTGTGCTACTAATTCAAGGGAAGCAGAAGAAACTACAGCTGCTATTTTCTGTGCAGAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 90 bp CTTGTGAGGACTGAATCTGAGGAGGCTATTGTTCTAAGGGATTCTTaGGTATCACTCTCTATATTTTCTGCACAGAAAATAGCAGCTGTA +
Preference number: 5 (lower is better)
Translates to: LVRTESEEAIVLRDS*VSLSIFSAQKIAAV
Trigger: TACAGCTGCTATTTTCTGTGCAGAAAATATAGAGAGTGATACTCAAGAATCCCTTAGAACAATAGCCTCCTCAGATTCAGTCCTCACAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS-3UTR CAA 90 bp GATTCACCGATTAGTCGAATAGCAATACTCTTGCCTTCATCTGTTTGGATCACACAGGACATTGCCACTTaGTTTTCCAGAAGTTTTAGA +
Preference number: 5 (lower is better)
Translates to: DSPISRIAILLPSSVWITQDIAT*FSRSFR
Trigger: TCTAAAACTTCTGGAAAACAAAGTGGCAATGTCCTG...TGTGATCCAAACAGATGAAGGCAAGAGTATTGCTATTCGACTAATCGGTGAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS TCA 90 bp TCGAAATGCTTCTTAGGATCAGGCATGGCAATATTGTGCTCTTCATaGTTTGTCCATGATTTTAAGTGGAAATCAAGAGCTGAATCTGGT +
Preference number: 5 (lower is better)
Translates to: SKCFLGSGMAILCSS*FVHDFKWKSRAESG
Trigger: ACCAGATTCAGCTCTTGATTTCCACTTAAAATCATGGACAAATCATGAAGAGCACAATATTGCCATGCCTGATCCTAAGAAGCATTTCGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS GCA 90 bp CGTATCAGGAGAATTAATTCCATTGTCACCATTAGTCTTCGAAGATaGAGCAATGTCTCCATCTTTTTGAATAAACACTGTAGGAGTCTC +
Preference number: 5 (lower is better)
Translates to: RIRRINSIVTISLRR*SNVSIFLNKHCRSL
Trigger: GAGACTCCTACAGTGTTTATTCAAAAAGATGGAGACATTGCTGCATCTTCGAAGACTAATGGTGACAATGGAATTAATTCTCCTGATACG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS-3UTR CAA 90 bp CGAATAGCAATACTCTTGCCTTCATCTGTTTGGATCACAAGTAAAGCTTCAAATCTGGAGAAATTACTTTaGGATTCAGCACTGGAGGAA +
Preference number: 5 (lower is better)
Translates to: RIAILLPSSVWITSKASNLEKLL*DSALEE
Trigger: TTCCTCCAGTGCTGAATCCAAAAGTAATTTCTCCAG...ATTTGAAGCTTTACTTGTGATCCAAACAGATGAAGGCAAGAGTATTGCTATTCG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225303.2
CDS TCA 90 bp TTGTCACCATTAGTCTTCGAAGATGCAGCAATGTCTCCATCTTTTTaGATAAACACTGTAGGAGTCTCTGTATTTAAACATCTATCCACG +
Preference number: 5 (lower is better)
Translates to: LSPLVFEDAAMSPSF*INTVGVSVFKHLST
Trigger: CGTGGATAGATGTTTAAATACAGAGACTCCTACAGTGTTTATTCAAAAAGATGGAGACATTGCTGCATCTTCGAAGACTAATGGTGACAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS GCA 90 bp CAGATCTTTCTGCAAAGAACTCTCCTAATGAAAGGCGTAGATAACTaGCATTGTCTTTATCAAAATCTGATGTGCCAAGTGATTTTCTCA +
Preference number: 5 (lower is better)
Translates to: QIFLQRTLLMKGVDN*HCLYQNLMCQVIFS
Trigger: TGAGAAAATCACTTGGCACATCAGATTTTGATAAAGACAATGGCAGTTATCTACGCCTTTCATTAGGAGAGTTCTTTGCAGAAAGATCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS GCA 72 bp TTCCCAGATGGGGCGCCAGGAGCTATGTATAGAGAGTaGCCAGTCCAGAGGGCAGGACACACAGCAGGCTGG +
Preference number: 6 (lower is better)
Translates to: FPDGAPGAMYRE*PVQRAGHTAGW
Trigger: CCAGCCTGCTGTGTGTCCTGCCCTCTGGACTGGGCACTCTCTATACATAGCTCCTGGCGCCCCATCTGGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS GCA 72 bp CTGCAAATCCCGAGGGGCATGGATCCTAGCTACTCCTaGTCGTGCTCGGAGGGCCACGCTTCTCAGAACAGG +
Preference number: 6 (lower is better)
Translates to: LQIPRGMDPSYS*SCSEGHASQNR
Trigger: CCTGTTCTGAGAAGCGTGGCCCTCCGAGCACGAGCAGGAGTAGCTAGGATCCATGCCCCTCGGGATTTGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CCA 72 bp AGCAAGCGTGAGGGAACCTCAGCTCCTCGGGCACTCTaGCATTCCCAAACGCAGGCATCATCCCTGAGTCCC +
Preference number: 6 (lower is better)
Translates to: SKREGTSAPRAL*HSQTQASSLSP
Trigger: GGGACTCAGGGATGATGCCTGCGTTTGGGAATGCCAGAGTGCCCGAGGAGCTGAGGTTCCCTCACGCTTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CCA 72 bp TGGACAGCCCAGCCTTCTTCAGAGGCTGCTGTGTCCTaGGCTGGGTGGGCAGACTGTGAGAGAAAAGGAGGG +
Preference number: 6 (lower is better)
Translates to: WTAQPSSEAAVS*AGWADCERKGG
Trigger: CCCTCCTTTTCTCTCACAGTCTGCCCACCCAGCCCAGGACACAGCAGCCTCTGAAGAAGGCTGGGCTGTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CCA 72 bp AACTCAGGGAGGTTCGGTACAGCTGGCCCAGACCGGTaGTTTAGAGCTGGCTTGTCCAGGAGAGCTTGGCCA +
Preference number: 6 (lower is better)
Translates to: NSGRFGTAGPDR*FRAGLSRRAWP
Trigger: TGGCCAAGCTCTCCTGGACAAGCCAGCTCTAAACCACCGGTCTGGGCCAGCTGTACCGAACCTCCCTGAGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CAA 72 bp GGTACAGCTGGCCCAGACCGGTGGTTTAGAGCTGGCTaGTCCAGGAGAGCTTGGCCAATCAGGTCCTGCTCA +
Preference number: 6 (lower is better)
Translates to: GTAGPDRWFRAG*SRRAWPIRSCS
Trigger: TGAGCAGGACCTGATTGGCCAAGCTCTCCTGGACAAGCCAGCTCTAAACCACCGGTCTGGGCCAGCTGTACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS TCA 72 bp AGGAGGGTCTGTGAAGCAATGCCTACACAGCAAGCGTaGGGGAACCTCAGCTCCTCGGGCACTCTGGCATTC +
Preference number: 6 (lower is better)
Translates to: RRVCEAMPTQQA*GNLSSSGTLAF
Trigger: GAATGCCAGAGTGCCCGAGGAGCTGAGGTTCCCTCACGCTTGCTGTGTAGGCATTGCTTCACAGACCCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CCA 72 bp TTGTGCTGGGTTCCAGAGGCACCCGGATTAGGAACCTaGCTGCTAGCTTCACTGCTGGCAGCTGACAGACGA +
Preference number: 6 (lower is better)
Translates to: LCWVPEAPGLGT*LLASLLAADRR
Trigger: TCGTCTGTCAGCTGCCAGCAGTGAAGCTAGCAGCCAGGTTCCTAATCCGGGTGCCTCTGGAACCCAGCACAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CCA 72 bp GCCAACAAATACACAGTCTGCAAATCCCGAGGGGCATaGATCCTAGCTACTCCTGCTCGTGCTCGGAGGGCC +
Preference number: 6 (lower is better)
Translates to: ANKYTVCKSRGA*ILATPARARRA
Trigger: GGCCCTCCGAGCACGAGCAGGAGTAGCTAGGATCCATGCCCCTCGGGATTTGCAGACTGTGTATTTGTTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CCA 72 bp CACAGACCTGCATGCCTGCATGGCACTGTGACAAGGTaGCATTCCCAGATGGGGCGCCAGGAGCTATGTATA +
Preference number: 6 (lower is better)
Translates to: HRPACLHGTVTR*HSQMGRQELCI
Trigger: TATACATAGCTCCTGGCGCCCCATCTGGGAATGCCACCTTGTCACAGTGCCATGCAGGCATGCAGGTCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS TCA 72 bp AAGCTCTGGTGCAGCAGCAGGATACGGAGAATACCCTaGAATCCCACAGACCTGCATGCCTGCATGGCACTG +
Preference number: 6 (lower is better)
Translates to: KLWCSSRIRRIP*NPTDLHACMAL
Trigger: CAGTGCCATGCAGGCATGCAGGTCTGTGGGATTTCAGGGTATTCTCCGTATCCTGCTGCTGCACCAGAGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS TCA 72 bp GTGGTCAGTGGGGTTGAGGACACTAAGGAGGGTCTGTaGAGCAATGCCTACACAGCAAGCGTGAGGGAACCT +
Preference number: 6 (lower is better)
Translates to: VVSGVEDTKEGL*SNAYTASVREP
Trigger: AGGTTCCCTCACGCTTGCTGTGTAGGCATTGCTTCACAGACCCTCCTTAGTGTCCTCAACCCCACTGACCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS TCA 72 bp GGGCACTCTGGCATTCCCAAACGCAGGCATCATCCCTaGGTCCCGTGGCTCAGTTTCACAGTTTGTAACCAT +
Preference number: 6 (lower is better)
Translates to: GHSGIPKRRHHP*VPWLSFTVCNH
Trigger: ATGGTTACAAACTGTGAAACTGAGCCACGGGACTCAGGGATGATGCCTGCGTTTGGGAATGCCAGAGTGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS GCA 72 bp GATACGGAGAATACCCTGAAATCCCACAGACCTGCATaGCTGCATGGCACTGTGACAAGGTGGCATTCCCAG +
Preference number: 6 (lower is better)
Translates to: DTENTLKSHRPA*LHGTVTRWHSQ
Trigger: CTGGGAATGCCACCTTGTCACAGTGCCATGCAGGCATGCAGGTCTGTGGGATTTCAGGGTATTCTCCGTATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS GCA 72 bp GCAGGATACGGAGAATACCCTGAAATCCCACAGACCTaGATGCCTGCATGGCACTGTGACAAGGTGGCATTC +
Preference number: 6 (lower is better)
Translates to: AGYGEYPEIPQT*MPAWHCDKVAF
Trigger: GAATGCCACCTTGTCACAGTGCCATGCAGGCATGCAGGTCTGTGGGATTTCAGGGTATTCTCCGTATCCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CAA 90 bp CCAGGAGAGCTTGGCCAATCAGGTCCTGCTCACTGGAGCCAGATGTaGAATCCATCATCTTACCAGCTTCCAAGGGTTCCCTACTTTCGG +
Preference number: 6 (lower is better)
Translates to: PGELGQSGPAHWSQM*NPSSYQLPRVPYFR
Trigger: CCGAAAGTAGGGAACCCTTGGAAGCTGGTAAGATGATGGATTCAACATCTGGCTCCAGTGAGCAGGACCTGATTGGCCAAGCTCTCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS TCA 72 bp CATCATGGTAACAAGCTGGGCAGGATCAGTGCTCACTaGCACGTCTGCGAAGGCGGAAGCAATGGTGCTTAT +
Preference number: 6 (lower is better)
Translates to: HHGNKLGRISAH*HVCEGGSNGAY
Trigger: ATAAGCACCATTGCTTCCGCCTTCGCAGACGTGTCAGTGAGCACTGATCCTGCCCAGCTTGTTACCATGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 72 bp CAGAGCCTCTGCCTGCCCTACCGTGTCAGCATCTGCTaGAAACAACCAAGAAGCAACACTGAACGTGCATCT +
Preference number: 6 (lower is better)
Translates to: QSLCLPYRVSIC*KQPRSNTERAS
Trigger: AGATGCACGTTCAGTGTTGCTTCTTGGTTGTTTTCAGCAGATGCTGACACGGTAGGGCAGGCAGAGGCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS GCA 72 bp CCATTCACCCAGATACTGAGAACTCTGATGCTGACTTaGAGCCAGTGGTCAGTGGGGTTGAGGACACTAAGG +
Preference number: 6 (lower is better)
Translates to: PFTQILRTLMLT*SQWSVGLRTLR
Trigger: CCTTAGTGTCCTCAACCCCACTGACCACTGGCTGCAAGTCAGCATCAGAGTTCTCAGTATCTGGGTGAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CCA 72 bp GGTTCCTCAGTAGTGAGTCACTCCTGGACGCTGCAATaGAAACTGAGGCAGCTTTCTCACTGTTCCGCACAT +
Preference number: 6 (lower is better)
Translates to: GSSVVSHSWTLQ*KLRQLSHCSAH
Trigger: ATGTGCGGAACAGTGAGAAAGCTGCCTCAGTTTCCATTGCAGCGTCCAGGAGTGACTCACTACTGAGGAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CCA 72 bp AAGGTACTCTGGGGTTCCTCAGTAGTGAGTCACTCCTaGACGCTGCAATGGAAACTGAGGCAGCTTTCTCAC +
Preference number: 6 (lower is better)
Translates to: KVLWGSSVVSHS*TLQWKLRQLSH
Trigger: GTGAGAAAGCTGCCTCAGTTTCCATTGCAGCGTCCAGGAGTGACTCACTACTGAGGAACCCCAGAGTACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CCA 72 bp TCGGAGGGCCACGCTTCTCAGAACAGGAATAGGGTTTaGGCTGTCCACTTCTATATCCACTCTGGCCAAGAA +
Preference number: 6 (lower is better)
Translates to: SEGHASQNRNRV*AVHFYIHSGQE
Trigger: TTCTTGGCCAGAGTGGATATAGAAGTGGACAGCCCAAACCCTATTCCTGTTCTGAGAAGCGTGGCCCTCCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CAA 72 bp CAGAAGGCTCTGGCCCTGAACAGACGCAGCGTTAGCTaGCTTCTCTTCTGCTCTTGGTTTCATGAGAGCATG +
Preference number: 6 (lower is better)
Translates to: QKALALNRRSVS*LLFCSWFHESM
Trigger: CATGCTCTCATGAAACCAAGAGCAGAAGAGAAGCAAGCTAACGCTGCGTCTGTTCAGGGCCAGAGCCTTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CAA 72 bp CTTGGCCAATCAGGTCCTGCTCACTGGAGCCAGATGTaGAATCCATCATCTTACCAGCTTCCAAGGGTTCCC +
Preference number: 6 (lower is better)
Translates to: LGQSGPAHWSQM*NPSSYQLPRVP
Trigger: GGGAACCCTTGGAAGCTGGTAAGATGATGGATTCAACATCTGGCTCCAGTGAGCAGGACCTGATTGGCCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CAA 90 bp ACAGGTTGTAAAGAGAAGAGGGAGCCATCAATCCAGAGGCAAGACTaGGTCCTAAGTACAGCCCAGAAGCCACAAGCTCTGGTGCAGCAG +
Preference number: 6 (lower is better)
Translates to: TGCKEKREPSIQRQD*VLSTAQKPQALVQQ
Trigger: CTGCTGCACCAGAGCTTGTGGCTTCTGGGCTGTACTTAGGACCAAGTCTTGCCTCTGGATTGATGGCTCCCTCTTCTCTTTACAACCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CAA 90 bp CTGGCTCGGACAATTGTGGTACTCAGCTCACTGGTGAGATCACTCTaGTGGTCCTCTGAGCTTTCATCAGCAGCTGTGACAGGAAAGGTA +
Preference number: 6 (lower is better)
Translates to: LARTIVVLSSLVRSL*WSSELSSAAVTGKV
Trigger: TACCTTTCCTGTCACAGCTGCTGATGAAAGCTCAGAGGACCACAAGAGTGATCTCACCAGTGAGCTGAGTACCACAATTGTCCGAGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 72 bp TCCCTCAGACTCTGTGTGAGCAGTAGGAGAATTTCCTaGGGTGCATGCATCATGAGGAAGCCGAGGACTGTT +
Preference number: 6 (lower is better)
Translates to: SLRLCVSSRRIS*GACIMRKPRTV
Trigger: AACAGTCCTCGGCTTCCTCATGATGCATGCACCTCAGGAAATTCTCCTACTGCTCACACAGAGTCTGAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 72 bp AGGCTGGTTCATCACCTTAGCAACAGAAGCATGAGCTaGAATGTGGGGTGCAGGATTGTGCTGGGTTCCAGA +
Preference number: 6 (lower is better)
Translates to: RLVHHLSNRSMS*NVGCRIVLGSR
Trigger: TCTGGAACCCAGCACAATCCTGCACCCCACATTTCAGCTCATGCTTCTGTTGCTAAGGTGATGAACCAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS GCA 72 bp GTCCTGCCGAGAGGGATGCCACCCCAAGTCAGAAACTaGTTATTGGACAGTATCAGTGGAATATCTGAGCAG +
Preference number: 6 (lower is better)
Translates to: VLPRGMPPQVRN*LLDSISGISEQ
Trigger: CTGCTCAGATATTCCACTGATACTGTCCAATAAGCAGTTTCTGACTTGGGGTGGCATCCCTCTCGGCAGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS GCA 72 bp AAGCTAGTTTCTGGAGCTGTGTCCTGCCGAGAGGGATaGCACCCCAAGTCAGAAACTGCTTATTGGACAGTA +
Preference number: 6 (lower is better)
Translates to: KLVSGAVSCREG*HPKSETAYWTV
Trigger: TACTGTCCAATAAGCAGTTTCTGACTTGGGGTGGCATCCCTCTCGGCAGGACACAGCTCCAGAAACTAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CCA 72 bp TGTCCAGGAGAGCTTGGCCAATCAGGTCCTGCTCACTaGAGCCAGATGTTGAATCCATCATCTTACCAGCTT +
Preference number: 6 (lower is better)
Translates to: CPGELGQSGPAH*SQMLNPSSYQL
Trigger: AAGCTGGTAAGATGATGGATTCAACATCTGGCTCCAGTGAGCAGGACCTGATTGGCCAAGCTCTCCTGGACA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CCA 72 bp CGAGAGGGATGCCACCCCAAGTCAGAAACTGCTTATTaGACAGTATCAGTGGAATATCTGAGCAGTGAGGCC +
Preference number: 6 (lower is better)
Translates to: REGCHPKSETAY*TVSVEYLSSEA
Trigger: GGCCTCACTGCTCAGATATTCCACTGATACTGTCCAATAAGCAGTTTCTGACTTGGGGTGGCATCCCTCTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CAA 72 bp GGTAAGACCACAAGACCGTCTTCAAAGGTGACGTGCTaGTCACTGCTGCTTGTCTCGCTGACACACTCTTTC +
Preference number: 6 (lower is better)
Translates to: GKTTRPSSKVTC*SLLLVSLTHSF
Trigger: GAAAGAGTGTGTCAGCGAGACAAGCAGCAGTGACAAGCACGTCACCTTTGAAGACGGTCTTGTGGTCTTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CAA 72 bp AAAGAGAAGAGGGAGCCATCAATCCAGAGGCAAGACTaGGTCCTAAGTACAGCCCAGAAGCCACAAGCTCTG +
Preference number: 6 (lower is better)
Translates to: KEKREPSIQRQD*VLSTAQKPQAL
Trigger: CAGAGCTTGTGGCTTCTGGGCTGTACTTAGGACCAAGTCTTGCCTCTGGATTGATGGCTCCCTCTTCTCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS TCA 72 bp CCTGCGAAGTTTCCAGAAATTTCACTGGGAGAAGAATaGCTGAGTGGTGACAGCCTGAAGCTCTCCTCGTCT +
Preference number: 6 (lower is better)
Translates to: PAKFPEISLGEE*LSGDSLKLSSS
Trigger: AGACGAGGAGAGCTTCAGGCTGTCACCACTCAGTCATTCTTCTCCCAGTGAAATTTCTGGAAACTTCGCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS GCA 72 bp TTAGGTAAGACCACAAGACCGTCTTCAAAGGTGACGTaGTTGTCACTGCTGCTTGTCTCGCTGACACACTCT +
Preference number: 6 (lower is better)
Translates to: LGKTTRPSSKVT*LSLLLVSLTHS
Trigger: AGAGTGTGTCAGCGAGACAAGCAGCAGTGACAAGCACGTCACCTTTGAAGACGGTCTTGTGGTCTTACCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS GCA 72 bp AACTGTTTCTTAAAGCTAGTTTCTGGAGCTGTGTCCTaGCGAGAGGGATGCCACCCCAAGTCAGAAACTGCT +
Preference number: 6 (lower is better)
Translates to: NCFLKLVSGAVS*REGCHPKSETA
Trigger: AGCAGTTTCTGACTTGGGGTGGCATCCCTCTCGGCAGGACACAGCTCCAGAAACTAGCTTTAAGAAACAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS GCA 72 bp AGGAAATGGCTTTGCTGTACTAAGCAAGTTCTGGGGTaGAGCAGTAGAGCACAGGTTGTAAAGAGAAGAGGG +
Preference number: 6 (lower is better)
Translates to: RKWLCCTKQVLG*SSRAQVVKRRG
Trigger: CCCTCTTCTCTTTACAACCTGTGCTCTACTGCTGCACCCCAGAACTTGCTTAGTACAGCAAAGCCATTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CCA 72 bp ACTGTCTTCATTTGCGGGGAACTTAAAATCATCTGCTaGCGACTCCTGTCCTCCTGCTTCATACATCATCCC +
Preference number: 6 (lower is better)
Translates to: TVFICGELKIIC*RLLSSCFIHHP
Trigger: GGGATGATGTATGAAGCAGGAGGACAGGAGTCGCCAGCAGATGATTTTAAGTTCCCCGCAAATGAAGACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CCA 72 bp TTTGTCTCTTGGTTTTTCCACAGCTTGTTCCCTTGGTaGAGTAGGACTGGCTCGGACAATTGTGGTACTCAG +
Preference number: 6 (lower is better)
Translates to: FVSWFFHSLFPW*SRTGSDNCGTQ
Trigger: CTGAGTACCACAATTGTCCGAGCCAGTCCTACTCCACCAAGGGAACAAGCTGTGGAAAAACCAAGAGACAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CCA 72 bp CCGTGGCTCAGTTTCACAGTTTGTAACCATAGGAAATaGCTTTGCTGTACTAAGCAAGTTCTGGGGTGCAGC +
Preference number: 6 (lower is better)
Translates to: PWLSFTVCNHRK*LCCTKQVLGCS
Trigger: GCTGCACCCCAGAACTTGCTTAGTACAGCAAAGCCATTTCCTATGGTTACAAACTGTGAAACTGAGCCACGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CAA 72 bp TCATCCACCTGGGAATTTCTCTGCAGTTCTTCAGCCTaGAGCATAACCGATCCTTCACTTAGCTGTACCTGG +
Preference number: 6 (lower is better)
Translates to: SSTWEFLCSSSA*SITDPSLSCTW
Trigger: CCAGGTACAGCTAAGTGAAGGATCGGTTATGCTCAAGGCTGAAGAACTGCAGAGAAATTCCCAGGTGGATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CAA 72 bp ACAATTGTGGTACTCAGCTCACTGGTGAGATCACTCTaGTGGTCCTCTGAGCTTTCATCAGCAGCTGTGACA +
Preference number: 6 (lower is better)
Translates to: TIVVLSSLVRSL*WSSELSSAAVT
Trigger: TGTCACAGCTGCTGATGAAAGCTCAGAGGACCACAAGAGTGATCTCACCAGTGAGCTGAGTACCACAATTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CAA 90 bp ATGTCATCTTCATCCACCTGGGAATTTCTCTGCAGTTCTTCAGCCTaGAGCATAACCGATCCTTCACTTAGCTGTACCTGGGACTGTTCA +
Preference number: 6 (lower is better)
Translates to: MSSSSTWEFLCSSSA*SITDPSLSCTWDCS
Trigger: TGAACAGTCCCAGGTACAGCTAAGTGAAGGATCGGTTATGCTCAAGGCTGAAGAACTGCAGAGAAATTCCCAGGTGGATGAAGATGACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 72 bp GGAAGGATCTGCTTTAGGATTCCTGGTGTATGCATCTaGGCTCTGCGATACTGCTGTCTGGAGATTTCATCA +
Preference number: 6 (lower is better)
Translates to: GRICFRIPGVCI*ALRYCCLEISS
Trigger: TGATGAAATCTCCAGACAGCAGTATCGCAGAGCTCAGATGCATACACCAGGAATCCTAAAGCAGATCCTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS GCA 72 bp GAAAGGTATTTTCCTGCTCAGATACGTAAGTCAGCCTaGTCATGTCAGCATGGGAACATGCCAACTGAGACA +
Preference number: 6 (lower is better)
Translates to: ERYFPAQIRKSA*SCQHGNMPTET
Trigger: TGTCTCAGTTGGCATGTTCCCATGCTGACATGAGCAGGCTGACTTACGTATCTGAGCAGGAAAATACCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS GCA 72 bp TCTGCTTTAGGATTCCTGGTGTATGCATCTGAGCTCTaGGATACTGCTGTCTGGAGATTTCATCACCACCAA +
Preference number: 6 (lower is better)
Translates to: SALGFLVYASEL*DTAVWRFHHHQ
Trigger: TTGGTGGTGATGAAATCTCCAGACAGCAGTATCGCAGAGCTCAGATGCATACACCAGGAATCCTAAAGCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CCA 72 bp TGGGCTATGGAAAATAACCCAAACTACCAGAAATTCTaGATCCTTTCCGTCGTAACTGGCAGGCATCACGTG +
Preference number: 6 (lower is better)
Translates to: WAMENNPNYQKF*ILSVVTGRHHV
Trigger: CACGTGATGCCTGCCAGTTACGACGGAAAGGATCCAGAATTTCTGGTAGTTTGGGTTATTTTCCATAGCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CAA 90 bp GCCTCTTCACCACAATCTCCTCTCCTCCACATCCTCTGCTTTGATTaGGAACAATATCCTTCAAATTGTGTGCCGCTTCCTTCTCATTTC +
Preference number: 6 (lower is better)
Translates to: ASSPQSPLLHILCFD*EQYPSNCVPLPSHF
Trigger: GAAATGAGAAGGAAGCGGCACACAATTTGAAGGATATTGTTCCAAATCAAAGCAGAGGATGTGGAGGAGAGGAGATTGTGGTGAAGAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 72 bp TTCTCCAGGTCTAAGAAACAAACTCTCTGGGTCCACTaGAAACTGACTTCCTTGCTCAGCGACCTTGATATC +
Preference number: 6 (lower is better)
Translates to: FSRSKKQTLWVH*KLTSLLSDLDI
Trigger: GATATCAAGGTCGCTGAGCAAGGAAGTCAGTTTTCAGTGGACCCAGAGAGTTTGTTTCTTAGACCTGGAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS TCA 72 bp AATCCTGATCTCACAATTGCTGGTCAGCCGCTCTTCTaGGCCAAAAGTGTTCTGAATCTGAAAGCAATCCTG +
Preference number: 6 (lower is better)
Translates to: NPDLTIAGQPLF*AKSVLNLKAIL
Trigger: CAGGATTGCTTTCAGATTCAGAACACTTTTGGCTCAGAAGAGCGGCTGACCAGCAATTGTGAGATCAGGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS GCA 72 bp GATACTGTCTTCATTTGCGGGGAACTTAAAATCATCTaGTGGCGACTCCTGTCCTCCTGCTTCATACATCAT +
Preference number: 6 (lower is better)
Translates to: DTVFICGELKII*WRLLSSCFIHH
Trigger: ATGATGTATGAAGCAGGAGGACAGGAGTCGCCAGCAGATGATTTTAAGTTCCCCGCAAATGAAGACAGTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CCA 72 bp CTGGTGTATGCATCTGAGCTCTGCGATACTGCTGTCTaGAGATTTCATCACCACCAAACATGTAGACAGTTA +
Preference number: 6 (lower is better)
Translates to: LVYASELCDTAV*RFHHHQTCRQL
Trigger: TAACTGTCTACATGTTTGGTGGTGATGAAATCTCCAGACAGCAGTATCGCAGAGCTCAGATGCATACACCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CCA 72 bp TTGTATTTTACTCTCTGGCATGATACATCCATGTTGTaGTGTGACTGTCAGGCAATGTGCAGGCCAGTACAG +
Preference number: 6 (lower is better)
Translates to: LYFTLWHDTSML*CDCQAMCRPVQ
Trigger: CTGTACTGGCCTGCACATTGCCTGACAGTCACACCACAACATGGATGTATCATGCCAGAGAGTAAAATACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CAA 72 bp CCACAATCTCCTCTCCTCCACATCCTCTGCTTTGATTaGGAACAATATCCTTCAAATTGTGTGCCGCTTCCT +
Preference number: 6 (lower is better)
Translates to: PQSPLLHILCFD*EQYPSNCVPLP
Trigger: AGGAAGCGGCACACAATTTGAAGGATATTGTTCCAAATCAAAGCAGAGGATGTGGAGGAGAGGAGATTGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CAA 90 bp TGTCTCGCTGACACACTCTTTCTTCCTTCCATGGTCTCGGTTATCTaGTATTTCCTCACACTGTTCTACGATGCTAAAGGAAGGTACTCT +
Preference number: 6 (lower is better)
Translates to: CLADTLFLPSMVSVI*YFLTLFYDAKGRYS
Trigger: AGAGTACCTTCCTTTAGCATCGTAGAACAGTGTGAGGAAATACAAGATAACCGAGACCATGGAAGGAAGAAAGAGTGTGTCAGCGAGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CAA 90 bp ACTCACGAGAATTTGTATTTTACTCTCTGGCATGATACATCCATGTaGTGGTGTGACTGTCAGGCAATGTGCAGGCCAGTACAGCTCAAA +
Preference number: 6 (lower is better)
Translates to: THENLYFTLWHDTSM*WCDCQAMCRPVQLK
Trigger: TTTGAGCTGTACTGGCCTGCACATTGCCTGACAGTCACACCACAACATGGATGTATCATGCCAGAGAGTAAAATACAAATTCTCGTGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 72 bp TCTTTTTCCTTAGAGCAGAATCATCACCCTGAAAGCTaGGTCGTAATCTTTCTCTTGGCTCAGGGTTGTCAC +
Preference number: 6 (lower is better)
Translates to: SFSLEQNHHPES*VVIFLLAQGCH
Trigger: GTGACAACCCTGAGCCAAGAGAAAGATTACGACTCAGCTTTCAGGGTGATGATTCTGCTCTAAGGAAAAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 72 bp ACAGTGTATGTAGATCAAACCAGTCCATGGGCACACTaGCTCTTTTGTGGACACGGAAAAATTAGGACTCAC +
Preference number: 6 (lower is better)
Translates to: TVYVDQTSPWAH*LFCGHGKIRTH
Trigger: GTGAGTCCTAATTTTTCCGTGTCCACAAAAGAGTCAGTGTGCCCATGGACTGGTTTGATCTACATACACTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS GCA 72 bp AGTGTAATGTCATCTTCATCCACCTGGGAATTTCTCTaGAGTTCTTCAGCCTTGAGCATAACCGATCCTTCA +
Preference number: 6 (lower is better)
Translates to: SVMSSSSTWEFL*SSSALSITDPS
Trigger: TGAAGGATCGGTTATGCTCAAGGCTGAAGAACTGCAGAGAAATTCCCAGGTGGATGAAGATGACATTACACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS GCA 72 bp ATCCTGAAAAGGCTTGCTTCTTCCCTTATTTCTGAGTaGTTTCATCATGGTAACAAGCTGGGCAGGATCAGT +
Preference number: 6 (lower is better)
Translates to: ILKRLASSLISE*FHHGNKLGRIS
Trigger: ACTGATCCTGCCCAGCTTGTTACCATGATGAAAGCACTCAGAAATAAGGGAAGAAGCAAGCCTTTTCAGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CCA 72 bp CACAATCTCCTCTCCTCCACATCCTCTGCTTTGATTTaGAACAATATCCTTCAAATTGTGTGCCGCTTCCTT +
Preference number: 6 (lower is better)
Translates to: HNLLSSTSSALI*NNILQIVCRFL
Trigger: AAGGAAGCGGCACACAATTTGAAGGATATTGTTCCAAATCAAAGCAGAGGATGTGGAGGAGAGGAGATTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CAA 90 bp CATCTTACCAGCTTCCAAGGGTTCCCTACTTTCGGAAGAAATATCTaGACTGGATGTAAAGTTAGGTTCTCCATCTTCAAATCCGGTCCT +
Preference number: 6 (lower is better)
Translates to: HLTSFQGFPTFGRNI*TGCKVRFSIFKSGP
Trigger: AGGACCGGATTTGAAGATGGAGAACCTAACTTTACATCCAGTCAAGATATTTCTTCCGAAAGTAGGGAACCCTTGGAAGCTGGTAAGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CAA 72 bp GACACACTCTTTCTTCCTTCCATGGTCTCGGTTATCTaGTATTTCCTCACACTGTTCTACGATGCTAAAGGA +
Preference number: 6 (lower is better)
Translates to: DTLFLPSMVSVI*YFLTLFYDAKG
Trigger: TCCTTTAGCATCGTAGAACAGTGTGAGGAAATACAAGATAACCGAGACCATGGAAGGAAGAAAGAGTGTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CAA 72 bp AATTTGTATTTTACTCTCTGGCATGATACATCCATGTaGTGGTGTGACTGTCAGGCAATGTGCAGGCCAGTA +
Preference number: 6 (lower is better)
Translates to: NLYFTLWHDTSM*WCDCQAMCRPV
Trigger: TACTGGCCTGCACATTGCCTGACAGTCACACCACAACATGGATGTATCATGCCAGAGAGTAAAATACAAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 72 bp CTCATAAAGTCCACATGCTCTCCTTTCAGAAGTTGGTaGCCAAAGCGTATCAGGAGAATTAATTCCATTGTC +
Preference number: 6 (lower is better)
Translates to: LIKSTCSPFRSW*PKRIRRINSIV
Trigger: GACAATGGAATTAATTCTCCTGATACGCTTTGGTCACCAACTTCTGAAAGGAGAGCATGTGGACTTTATGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 72 bp GAATCTTCACCACCAGACAGTGTGTTCTTATATTCCTaGAGCTTGTTATTACTACAGAGAGTGTCCTCTGTC +
Preference number: 6 (lower is better)
Translates to: ESSPPDSVFLYS*SLLLLQRVSSV
Trigger: GACAGAGGACACTCTCTGTAGTAATAACAAGCTTCAGGAATATAAGAACACACTGTCTGGTGGTGAAGATTC
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 72 bp GAGAAATTACTTTTGGATTCAGCACTGGAGGAAGGCTaGAGAAATTCTCGGCTACAAATGGTACCTCTGAAT +
Preference number: 6 (lower is better)
Translates to: EKLLLDSALEEG*RNSRLQMVPLN
Trigger: ATTCAGAGGTACCATTTGTAGCCGAGAATTTCTTCAGCCTTCCTCCAGTGCTGAATCCAAAAGTAATTTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CAA 72 bp TTAAGTCTCCTGAAGAGAAACCACGGTAAGGCTGAGTaGCTTCTTTCTCCAAATCACTTCTTGACAAATCAG +
Preference number: 6 (lower is better)
Translates to: LSLLKRNHGKAE*LLSPNHFLTNQ
Trigger: CTGATTTGTCAAGAAGTGATTTGGAGAAAGAAGCAACTCAGCCTTACCGTGGTTTCTCTTCAGGAGACTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CAA 90 bp AGAAACCACGGTAAGGCTGAGTTGCTTCTTTCTCCAAATCACTTCTaGACAAATCAGATTTTATTAACGCAACAGGTTCTCTCTCCTCTG +
Preference number: 6 (lower is better)
Translates to: RNHGKAELLLSPNHF*TNQILLTQQVLSPL
Trigger: CAGAGGAGAGAGAACCTGTTGCGTTAATAAAATCTGATTTGTCAAGAAGTGATTTGGAGAAAGAAGCAACTCAGCCTTACCGTGGTTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CAA 90 bp CTTTCAGAAGTTGGTGACCAAAGCGTATCAGGAGAATTAATTCCATaGTCACCATTAGTCTTCGAAGATGCAGCAATGTCTCCATCTTTT +
Preference number: 6 (lower is better)
Translates to: LSEVGDQSVSGELIP*SPLVFEDAAMSPSF
Trigger: AAAAGATGGAGACATTGCTGCATCTTCGAAGACTAATGGTGACAATGGAATTAATTCTCCTGATACGCTTTGGTCACCAACTTCTGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 72 bp GCTTCCAAGGGTTCCCTACTTTCGGAAGAAATATCTTaGCTGGATGTAAAGTTAGGTTCTCCATCTTCAAAT +
Preference number: 6 (lower is better)
Translates to: ASKGSLLSEEIS*LDVKLGSPSSN
Trigger: ATTTGAAGATGGAGAACCTAACTTTACATCCAGTCAAGATATTTCTTCCGAAAGTAGGGAACCCTTGGAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CAA 72 bp AGCTTCCAAGGGTTCCCTACTTTCGGAAGAAATATCTaGACTGGATGTAAAGTTAGGTTCTCCATCTTCAAA +
Preference number: 6 (lower is better)
Translates to: SFQGFPTFGRNI*TGCKVRFSIFK
Trigger: TTTGAAGATGGAGAACCTAACTTTACATCCAGTCAAGATATTTCTTCCGAAAGTAGGGAACCCTTGGAAGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS TCA 72 bp TTGCTTCTCTTCTGCTCTTGGTTTCATGAGAGCATGTaGCAAATCTGGACTTTCTATGTAGTTCTTTTTCCT +
Preference number: 6 (lower is better)
Translates to: LLLFCSWFHESM*QIWTFYVVLFP
Trigger: AGGAAAAAGAACTACATAGAAAGTCCAGATTTGTCACATGCTCTCATGAAACCAAGAGCAGAAGAGAAGCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 72 bp TTAACAGTTTTTCATTGTCTAATAAGCTGGTATGGCTaGAATCACGGTTTGGATTCACGGCTTCGAAATGCT +
Preference number: 6 (lower is better)
Translates to: LTVFHCLISWYG*NHGLDSRLRNA
Trigger: AGCATTTCGAAGCCGTGAATCCAAACCGTGATTTCAGCCATACCAGCTTATTAGACAATGAAAAACTGTTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 72 bp CGCTTCCTTCTCATTTCTCCAGGCATGAGAATAAAGTaGCATCACATTATCTACCTGCATTTTATTATCGAC +
Preference number: 6 (lower is better)
Translates to: RFLLISPGMRIK*HHIIYLHFIID
Trigger: GTCGATAATAAAATGCAGGTAGATAATGTGATGTCACTTTATTCTCATGCCTGGAGAAATGAGAAGGAAGCG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS GCA 72 bp ACTTCAATATTCCCAGCATTTTTCAAAGGCAAGGGATaGTTTGTTGAGGAATTCACATCAGCCAACAAATAC +
Preference number: 6 (lower is better)
Translates to: TSIFPAFFKGKG*FVEEFTSANKY
Trigger: GTATTTGTTGGCTGATGTGAATTCCTCAACAAAGCATCCCTTGCCTTTGAAAAATGCTGGGAATATTGAAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CCA 72 bp AGTGTTAACAGTTTTTCATTGTCTAATAAGCTGGTATaGCTGAAATCACGGTTTGGATTCACGGCTTCGAAA +
Preference number: 6 (lower is better)
Translates to: SVNSFSLSNKLV*LKSRFGFTASK
Trigger: TTTCGAAGCCGTGAATCCAAACCGTGATTTCAGCCATACCAGCTTATTAGACAATGAAAAACTGTTAACACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CAA 72 bp CCTCACTATTACCAAGTAGTGAATTGGCTAAAAAGCTaGGAAATGACTCTTCTGCTATTCCTCGGAAATCTT +
Preference number: 6 (lower is better)
Translates to: PHYYQVVNWLKS*EMTLLLFLGNL
Trigger: AAGATTTCCGAGGAATAGCAGAAGAGTCATTTCCAAGCTTTTTAGCCAATTCACTACTTGGTAATAGTGAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS CAA 72 bp GGTAAGGCTGAGTTGCTTCTTTCTCCAAATCACTTCTaGACAAATCAGATTTTATTAACGCAACAGGTTCTC +
Preference number: 6 (lower is better)
Translates to: GKAELLLSPNHF*TNQILLTQQVL
Trigger: GAGAACCTGTTGCGTTAATAAAATCTGATTTGTCAAGAAGTGATTTGGAGAAAGAAGCAACTCAGCCTTACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 72 bp TTCTTAGGATCAGGCATGGCAATATTGTGCTCTTCATaGTTTGTCCATGATTTTAAGTGGAAATCAAGAGCT +
Preference number: 6 (lower is better)
Translates to: FLGSGMAILCSS*FVHDFKWKSRA
Trigger: AGCTCTTGATTTCCACTTAAAATCATGGACAAATCATGAAGAGCACAATATTGCCATGCCTGATCCTAAGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS TCA 72 bp TATCCAGACAATGGTATCATAAACTTAATGCCTGGCTaGGATCGACTTCCAAGTTGCTTGATTTCAAGTTTA +
Preference number: 6 (lower is better)
Translates to: YPDNGIINLMPG*DRLPSCLISSL
Trigger: TAAACTTGAAATCAAGCAACTTGGAAGTCGATCTCAGCCAGGCATTAAGTTTATGATACCATTGTCTGGATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS CAA 72 bp TGCACAAATATTATCAGGATCCTTTCCTCACAGGCTTaGGAATCCTTTGGTGTAAAGGAAATTGTAACTTCA +
Preference number: 6 (lower is better)
Translates to: CTNIIRILSSQA*ESFGVKEIVTS
Trigger: TGAAGTTACAATTTCCTTTACACCAAAGGATTCCAAAGCCTGTGAGGAAAGGATCCTGATAATATTTGTGCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025425.7
ENSMUST00000225303.2
CDS TCA 72 bp ACTGAATCTGAGGAGGCTATTGTTCTAAGGGATTCTTaGGTATCACTCTCTATATTTTCTGCACAGAAAATA +
Preference number: 6 (lower is better)
Translates to: TESEEAIVLRDS*VSLSIFSAQKI
Trigger: TATTTTCTGTGCAGAAAATATAGAGAGTGATACTCAAGAATCCCTTAGAACAATAGCCTCCTCAGATTCAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7
CDS GCA 72 bp AGAATTAATTCCATTGTCACCATTAGTCTTCGAAGATaGAGCAATGTCTCCATCTTTTTGAATAAACACTGT +
Preference number: 6 (lower is better)
Translates to: RINSIVTISLRR*SNVSIFLNKHC
Trigger: ACAGTGTTTATTCAAAAAGATGGAGACATTGCTGCATCTTCGAAGACTAATGGTGACAATGGAATTAATTCT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025425.7