Pregenerated sensors for CEP19 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035790Ensembl transcript IDs: ENSMUST00000042869.7, ENSMUST00000115168.9, ENSMUST00000169186.3
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | CAAACAGGTCTGAACAGTAGTACCTATCACTCATTGTGGGAGGACTaGCCACTGTACAAACCAGCCTTTCGCAGGAAGTGGCTCTGGGTT | + |
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Preference number: 2 (lower is better) Translates to: QTGLNSSTYHSLWED*PLYKPAFRRKWLWV Trigger: AACCCAGAGCCACTTCCTGCGAAAGGCTGGTTTGTACAGTGGCAAGTCCTCCCACAATGAGTGATAGGTACTACTGTTCAGACCTGTTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| 3UTR-3UTR TCA 90 bp | GTCGCCTGTCAACGCCTTGAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCCTGATCTTTGTTCTCTaGGGAAACGTGGAGCGCTTC | + |
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Preference number: 2 (lower is better) Translates to: VACQRLEGRFPPCISVFLLIFVL*GNVERF Trigger: GAAGCGCTCCACGTTTCCTCAGAGAACAAAGATCAG...GAGAAACACAGAAATACAAGGTGGGAATCTGCCTTCAAGGCGTTGACAGGCGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| 3UTR-3UTR TCA 90 bp | TCTAGTAAGAACAAACACATCTGCACACAGAGGATTTGTGAGGCCGAGATCTTTCTGATCTTTGTTCTCTaGGGAAACGTGGAGCGCTTC | + |
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Preference number: 2 (lower is better) Translates to: SSKNKHICTQRICEAEIFLIFVL*GNVERF Trigger: GAAGCGCTCCACGTTTCCTCAGAGAACAAAGATCAG...AAAGATCTCGGCCTCACAAATCCTCTGTGTGCAGATGTGTTTGTTCTTACTAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| 3UTR-3UTR GCA 90 bp | ATTCTAGTAAGAACAAACACATCTGCACACAGAGGATTTGTGAGGCCGAGATCTCATTGTGGGAGGACTTaGCACTGTACAAACCAGCCT | + |
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Preference number: 2 (lower is better) Translates to: ILVRTNTSAHRGFVRPRSHCGRT*HCTNQP Trigger: AGGCTGGTTTGTACAGTGGCAAGTCCTCCCACAATG...AGATCTCGGCCTCACAAATCCTCTGTGTGCAGATGTGTTTGTTCTTACTAGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| 3UTR-3UTR CCA 90 bp | GCCTGTCAACGCCTTGAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCATAGGCCTACGTAGCACATaGAAGTGTCCTGGTTTTATA | + |
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Preference number: 2 (lower is better) Translates to: ACQRLEGRFPPCISVFLIGLRST*KCPGFI Trigger: TATAAAACCAGGACACTTCCATGTGCTACGTAGGCC...TATGAGAAACACAGAAATACAAGGTGGGAATCTGCCTTCAAGGCGTTGACAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| 3UTR-3UTR CCA 90 bp | GCCTGTCAACGCCTTGAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCATACACATGGAAGTGTCCTaGTTTTATAGATCGCTAGTG | + |
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Preference number: 2 (lower is better) Translates to: ACQRLEGRFPPCISVFLIHMEVS*FYRSLV Trigger: CACTAGCGATCTATAAAACCAGGACACTTCCATGTG...TATGAGAAACACAGAAATACAAGGTGGGAATCTGCCTTCAAGGCGTTGACAGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| 3UTR-3UTR CCA 90 bp | ATTCTAGTAAGAACAAACACATCTGCACACAGAGGATTTGTGAGGCCGAGATCTACCTATCACTCATTGTaGGAGGACTTGCCACTGTAC | + |
|
Preference number: 2 (lower is better) Translates to: ILVRTNTSAHRGFVRPRSTYHSL*EDLPLY Trigger: GTACAGTGGCAAGTCCTCCCACAATGAGTGATAGGT...AGATCTCGGCCTCACAAATCCTCTGTGTGCAGATGTGTTTGTTCTTACTAGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| 3UTR-3UTR CCA 90 bp | ATTCTAGTAAGAACAAACACATCTGCACACAGAGGATTTGTGAGGCCGAGATCTGGCCTACGTAGCACATaGAAGTGTCCTGGTTTTATA | + |
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Preference number: 2 (lower is better) Translates to: ILVRTNTSAHRGFVRPRSGLRST*KCPGFI Trigger: TATAAAACCAGGACACTTCCATGTGCTACGTAGGCC...AGATCTCGGCCTCACAAATCCTCTGTGTGCAGATGTGTTTGTTCTTACTAGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| 3UTR-3UTR TCA 90 bp | TCTAGTAAGAACAAACACATCTGCACACAGAGGATTTGTGAGGCCGAGATCTTTATGCACATAGAGTCCTaGAGAACACAGGTTAATTCC | + |
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Preference number: 2 (lower is better) Translates to: SSKNKHICTQRICEAEIFMHIES*RTQVNS Trigger: GGAATTAACCTGTGTTCTTCAGGACTCTATGTGCAT...AAAGATCTCGGCCTCACAAATCCTCTGTGTGCAGATGTGTTTGTTCTTACTAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| 3UTR-3UTR TCA 90 bp | ATTCTAGTAAGAACAAACACATCTGCACACAGAGGATTTGTGAGGCCGAGATCTACTCACAAACAGGTCTaGACAGTAGTACCTATCACT | + |
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Preference number: 2 (lower is better) Translates to: ILVRTNTSAHRGFVRPRSTHKQV*TVVPIT Trigger: AGTGATAGGTACTACTGTTCAGACCTGTTTGTGAGT...AGATCTCGGCCTCACAAATCCTCTGTGTGCAGATGTGTTTGTTCTTACTAGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| 3UTR-3UTR CAA 90 bp | TCTAGTAAGAACAAACACATCTGCACACAGAGGATTTGTGAGGCCGAGATCTTTCACACCCTTCCCTCTTaGCTTCATCTTGATTTCTAC | + |
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Preference number: 3 (lower is better) Translates to: SSKNKHICTQRICEAEIFHTLPS*LHLDFY Trigger: GTAGAAATCAAGATGAAGCAAAGAGGGAAGGGTGTG...AAAGATCTCGGCCTCACAAATCCTCTGTGTGCAGATGTGTTTGTTCTTACTAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR GCA 90 bp | GTCGCCTGTCAACGCCTTGAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCGTTTCTGCCAAGCTCTaGCCCTGCAAGGAACCTCGC | + |
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Preference number: 4 (lower is better) Translates to: VACQRLEGRFPPCISVFLVSAKL*PCKEPR Trigger: GCGAGGTTCCTTGCAGGGGCAGAGCTTGGCAGAAAC...GAGAAACACAGAAATACAAGGTGGGAATCTGCCTTCAAGGCGTTGACAGGCGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR TCA 90 bp | GTCGCCTGTCAACGCCTTGAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCTCAGAAGTCATCCACTaGCGCTGTGTCCCAGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: VACQRLEGRFPPCISVFLSEVIH*RCVPAA Trigger: TGCAGCTGGGACACAGCGTCAGTGGATGACTTCTGA...GAGAAACACAGAAATACAAGGTGGGAATCTGCCTTCAAGGCGTTGACAGGCGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR GCA 90 bp | GTCGCCTGTCAACGCCTTGAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCAACAGCTTCTCCAGCTaGTTCAGGGGCACCTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: VACQRLEGRFPPCISVFLNSFSS*FRGTCS Trigger: GGAACAGGTGCCCCTGAAGCAGCTGGAGAAGCTGTT...GAGAAACACAGAAATACAAGGTGGGAATCTGCCTTCAAGGCGTTGACAGGCGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR GCA 90 bp | GAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCATAGGCCTACGTAGCACAGTTTCTGCCAAGCTCTaGCCCTGCAAGGAACCTCGC | + |
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Preference number: 4 (lower is better) Translates to: EGRFPPCISVFLIGLRSTVSAKL*PCKEPR Trigger: GCGAGGTTCCTTGCAGGGGCAGAGCTTGGCAGAAAC...TGTGCTACGTAGGCCTATGAGAAACACAGAAATACAAGGTGGGAATCTGCCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR TCA 90 bp | GCCTGTCAACGCCTTGAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCATATCAGAAGTCATCCACTaGCGCTGTGTCCCAGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: ACQRLEGRFPPCISVFLISEVIH*RCVPAA Trigger: TGCAGCTGGGACACAGCGTCAGTGGATGACTTCTGA...TATGAGAAACACAGAAATACAAGGTGGGAATCTGCCTTCAAGGCGTTGACAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR GCA 90 bp | GCCTGTCAACGCCTTGAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCATAAACAGCTTCTCCAGCTaGTTCAGGGGCACCTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: ACQRLEGRFPPCISVFLINSFSS*FRGTCS Trigger: GGAACAGGTGCCCCTGAAGCAGCTGGAGAAGCTGTT...TATGAGAAACACAGAAATACAAGGTGGGAATCTGCCTTCAAGGCGTTGACAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR GCA 90 bp | GAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCATAGGCCTACGTAGCACAAACAGCTTCTCCAGCTaGTTCAGGGGCACCTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: EGRFPPCISVFLIGLRSTNSFSS*FRGTCS Trigger: GGAACAGGTGCCCCTGAAGCAGCTGGAGAAGCTGTT...TGTGCTACGTAGGCCTATGAGAAACACAGAAATACAAGGTGGGAATCTGCCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR GCA 90 bp | GTCGCCTGTCAACGCCTTGAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCCTGTTCCATTGTTTCTaGCAAGCTCTGCCCCTGCAA | + |
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Preference number: 4 (lower is better) Translates to: VACQRLEGRFPPCISVFLLFHCF*QALPLQ Trigger: TTGCAGGGGCAGAGCTTGGCAGAAACAATGGAACAG...GAGAAACACAGAAATACAAGGTGGGAATCTGCCTTCAAGGCGTTGACAGGCGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| 3UTR CAA 72 bp | CTGAACAGTAGTACCTATCACTCATTGTGGGAGGACTaGCCACTGTACAAACCAGCCTTTCGCAGGAAGTGG | + |
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Preference number: 4 (lower is better) Translates to: LNSSTYHSLWED*PLYKPAFRRKW Trigger: CCACTTCCTGCGAAAGGCTGGTTTGTACAGTGGCAAGTCCTCCCACAATGAGTGATAGGTACTACTGTTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR TCA 90 bp | GTCGCCTGTCAACGCCTTGAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCCGAAAAGCTCATCCATaGTGCTCTTCCTTTTGGCGA | + |
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Preference number: 4 (lower is better) Translates to: VACQRLEGRFPPCISVFLRKAHP*CSSFWR Trigger: TCGCCAAAAGGAAGAGCATCATGGATGAGCTTTTCG...GAGAAACACAGAAATACAAGGTGGGAATCTGCCTTCAAGGCGTTGACAGGCGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR GCA 90 bp | TCTAGTAAGAACAAACACATCTGCACACAGAGGATTTGTGAGGCCGAGATCTTTGTTTCTGCCAAGCTCTaGCCCTGCAAGGAACCTCGC | + |
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Preference number: 4 (lower is better) Translates to: SSKNKHICTQRICEAEIFVSAKL*PCKEPR Trigger: GCGAGGTTCCTTGCAGGGGCAGAGCTTGGCAGAAAC...AAAGATCTCGGCCTCACAAATCCTCTGTGTGCAGATGTGTTTGTTCTTACTAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR TCA 90 bp | ATTCTAGTAAGAACAAACACATCTGCACACAGAGGATTTGTGAGGCCGAGATCTTCAGAAGTCATCCACTaGCGCTGTGTCCCAGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: ILVRTNTSAHRGFVRPRSSEVIH*RCVPAA Trigger: TGCAGCTGGGACACAGCGTCAGTGGATGACTTCTGA...AGATCTCGGCCTCACAAATCCTCTGTGTGCAGATGTGTTTGTTCTTACTAGAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR TCA 90 bp | TGTCAACGCCTTGAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCATAGGCCGAAAAGCTCATCCATaGTGCTCTTCCTTTTGGCGA | + |
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Preference number: 4 (lower is better) Translates to: CQRLEGRFPPCISVFLIGRKAHP*CSSFWR Trigger: TCGCCAAAAGGAAGAGCATCATGGATGAGCTTTTCG...GCCTATGAGAAACACAGAAATACAAGGTGGGAATCTGCCTTCAAGGCGTTGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR TCA 90 bp | GAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCATAGGCCTACGTAGCACACGAAAAGCTCATCCATaGTGCTCTTCCTTTTGGCGA | + |
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Preference number: 4 (lower is better) Translates to: EGRFPPCISVFLIGLRSTRKAHP*CSSFWR Trigger: TCGCCAAAAGGAAGAGCATCATGGATGAGCTTTTCG...TGTGCTACGTAGGCCTATGAGAAACACAGAAATACAAGGTGGGAATCTGCCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR CCA 90 bp | GAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCATAGGCCTACGTAGCACAATCACAGCTGGAGGCTaGAACCTAACTCCACATTTC | + |
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Preference number: 4 (lower is better) Translates to: EGRFPPCISVFLIGLRSTITAGG*NLTPHF Trigger: GAAATGTGGAGTTAGGTTCCAGCCTCCAGCTGTGAT...TGTGCTACGTAGGCCTATGAGAAACACAGAAATACAAGGTGGGAATCTGCCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR CCA 90 bp | TGTCAACGCCTTGAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCATAGGCACTGTTCCGCAGCTCTaGTGCAATCTGAGAACTTTG | + |
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Preference number: 4 (lower is better) Translates to: CQRLEGRFPPCISVFLIGTVPQL*CNLRTL Trigger: CAAAGTTCTCAGATTGCACCAGAGCTGCGGAACAGT...GCCTATGAGAAACACAGAAATACAAGGTGGGAATCTGCCTTCAAGGCGTTGACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR GCA 90 bp | GAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCATAGGCCTACGTAGCACAGTTCCGCAGCTCTGGTaGAATCTGAGAACTTTGAAA | + |
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Preference number: 4 (lower is better) Translates to: EGRFPPCISVFLIGLRSTVPQLW*NLRTLK Trigger: TTTCAAAGTTCTCAGATTGCACCAGAGCTGCGGAAC...TGTGCTACGTAGGCCTATGAGAAACACAGAAATACAAGGTGGGAATCTGCCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR GCA 90 bp | TGTCAACGCCTTGAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCATAGGCGTTCCGCAGCTCTGGTaGAATCTGAGAACTTTGAAA | + |
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Preference number: 4 (lower is better) Translates to: CQRLEGRFPPCISVFLIGVPQLW*NLRTLK Trigger: TTTCAAAGTTCTCAGATTGCACCAGAGCTGCGGAAC...GCCTATGAGAAACACAGAAATACAAGGTGGGAATCTGCCTTCAAGGCGTTGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR GCA 90 bp | ATTCTAGTAAGAACAAACACATCTGCACACAGAGGATTTGTGAGGCCGAGATCTCTGTTCCATTGTTTCTaGCAAGCTCTGCCCCTGCAA | + |
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Preference number: 4 (lower is better) Translates to: ILVRTNTSAHRGFVRPRSLFHCF*QALPLQ Trigger: TTGCAGGGGCAGAGCTTGGCAGAAACAATGGAACAG...AGATCTCGGCCTCACAAATCCTCTGTGTGCAGATGTGTTTGTTCTTACTAGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR GCA 90 bp | ATGGAAGTGTCCTGGTTTTATAGATCGCTAGTGTTTCAGCGTTTTCTAGAACTGCTGTTCCATTGTTTCTaGCAAGCTCTGCCCCTGCAA | + |
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Preference number: 4 (lower is better) Translates to: MEVSWFYRSLVFQRFLELLFHCF*QALPLQ Trigger: TTGCAGGGGCAGAGCTTGGCAGAAACAATGGAACAG...CAGTTCTAGAAAACGCTGAAACACTAGCGATCTATAAAACCAGGACACTTCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR CCA 90 bp | TCTAGTAAGAACAAACACATCTGCACACAGAGGATTTGTGAGGCCGAGATCTTTATCACAGCTGGAGGCTaGAACCTAACTCCACATTTC | + |
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Preference number: 4 (lower is better) Translates to: SSKNKHICTQRICEAEIFITAGG*NLTPHF Trigger: GAAATGTGGAGTTAGGTTCCAGCCTCCAGCTGTGAT...AAAGATCTCGGCCTCACAAATCCTCTGTGTGCAGATGTGTTTGTTCTTACTAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR CCA 90 bp | ATTCTAGTAAGAACAAACACATCTGCACACAGAGGATTTGTGAGGCCGAGATCTACTGTTCCGCAGCTCTaGTGCAATCTGAGAACTTTG | + |
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Preference number: 4 (lower is better) Translates to: ILVRTNTSAHRGFVRPRSTVPQL*CNLRTL Trigger: CAAAGTTCTCAGATTGCACCAGAGCTGCGGAACAGT...AGATCTCGGCCTCACAAATCCTCTGTGTGCAGATGTGTTTGTTCTTACTAGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR TCA 90 bp | GAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCATAGGCCTACGTAGCACATCGTCCTTTCTCTTCTaGTTTTTCTCGAAAAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: EGRFPPCISVFLIGLRSTSSFLF*FFSKSS Trigger: TGAGCTTTTCGAGAAAAATCAGAAGAGAAAGGACGA...TGTGCTACGTAGGCCTATGAGAAACACAGAAATACAAGGTGGGAATCTGCCTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR CCA 90 bp | ATGGAAGTGTCCTGGTTTTATAGATCGCTAGTGTTTCAGCGTTTTCTAGAACTGACTGTTCCGCAGCTCTaGTGCAATCTGAGAACTTTG | + |
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Preference number: 4 (lower is better) Translates to: MEVSWFYRSLVFQRFLELTVPQL*CNLRTL Trigger: CAAAGTTCTCAGATTGCACCAGAGCTGCGGAACAGT...CAGTTCTAGAAAACGCTGAAACACTAGCGATCTATAAAACCAGGACACTTCCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR TCA 90 bp | ATTCTAGTAAGAACAAACACATCTGCACACAGAGGATTTGTGAGGCCGAGATCTTCGTCCTTTCTCTTCTaGTTTTTCTCGAAAAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: ILVRTNTSAHRGFVRPRSSSFLF*FFSKSS Trigger: TGAGCTTTTCGAGAAAAATCAGAAGAGAAAGGACGA...AGATCTCGGCCTCACAAATCCTCTGTGTGCAGATGTGTTTGTTCTTACTAGAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR CAA 90 bp | GTCGCCTGTCAACGCCTTGAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCCTTTTGGCGAGCTCCTaGTCGTCCAGTTTGTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: VACQRLEGRFPPCISVFLLLASS*SSSLFR Trigger: CCTGAACAAACTGGACGACAAGGAGCTCGCCAAAAG...GAGAAACACAGAAATACAAGGTGGGAATCTGCCTTCAAGGCGTTGACAGGCGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR CAA 90 bp | GAAGGCAGATTCCCACCTTGTATTTCTGTGTTTCTCATAGGCCTACGTAGCACACTTTTGGCGAGCTCCTaGTCGTCCAGTTTGTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: EGRFPPCISVFLIGLRSTLLASS*SSSLFR Trigger: CCTGAACAAACTGGACGACAAGGAGCTCGCCAAAAG...TGTGCTACGTAGGCCTATGAGAAACACAGAAATACAAGGTGGGAATCTGCCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR CAA 90 bp | TCTAGTAAGAACAAACACATCTGCACACAGAGGATTTGTGAGGCCGAGATCTTTCTTTTGGCGAGCTCCTaGTCGTCCAGTTTGTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: SSKNKHICTQRICEAEIFLLASS*SSSLFR Trigger: CCTGAACAAACTGGACGACAAGGAGCTCGCCAAAAG...AAAGATCTCGGCCTCACAAATCCTCTGTGTGCAGATGTGTTTGTTCTTACTAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR CAA 90 bp | TCTAGTAAGAACAAACACATCTGCACACAGAGGATTTGTGAGGCCGAGATCTTTTGCAATCTGAGAACTTaGAAAAGTTTCGGACAGGCA | + |
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Preference number: 5 (lower is better) Translates to: SSKNKHICTQRICEAEIFCNLRT*KSFGQA Trigger: TGCCTGTCCGAAACTTTTCAAAGTTCTCAGATTGCA...AAAGATCTCGGCCTCACAAATCCTCTGTGTGCAGATGTGTTTGTTCTTACTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS-3UTR CAA 90 bp | ATTCTAGTAAGAACAAACACATCTGCACACAGAGGATTTGTGAGGCCGAGATCTTGCAATCTGAGAACTTaGAAAAGTTTCGGACAGGCA | + |
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Preference number: 5 (lower is better) Translates to: ILVRTNTSAHRGFVRPRSCNLRT*KSFGQA Trigger: TGCCTGTCCGAAACTTTTCAAAGTTCTCAGATTGCA...AGATCTCGGCCTCACAAATCCTCTGTGTGCAGATGTGTTTGTTCTTACTAGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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| CDS CAA 72 bp | CGGGATCGATGGTCGTTTCCCGCCGAATCTGTTCCATaGTTTCTGCCAAGCTCTGCCCCTGCAAGGAACCTC | + |
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Preference number: 6 (lower is better) Translates to: RDRWSFPAESVP*FLPSSAPARNL Trigger: GAGGTTCCTTGCAGGGGCAGAGCTTGGCAGAAACAATGGAACAGATTCGGCGGGAAACGACCATCGATCCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042869.7 ENSMUST00000115168.9 ENSMUST00000169186.3 |
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