RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CEP135 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036403

Ensembl transcript IDs: ENSMUST00000049060.8, ENSMUST00000121979.8

Found 250 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCCAGAGACTTGAACACTTGGCCCCAGGTGTGTGGGGGTGCTGTTTaGGGAGGTCTAAGAGGTGCAGATTTACTGGAGCAAGTGCGTCCC +
Preference number: 1 (lower is better)
Translates to: PRDLNTWPQVCGGAV*GGLRGADLLEQVRP
Trigger: GGGACGCACTTGCTCCAGTAAATCTGCACCTCTTAGACCTCCTCAAACAGCACCCCCACACACCTGGGGCCAAGTGTTCAAGTCTCTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR CCA 90 bp TCCCACAGACAGACCCAGAGACTTGAACACTTGGCCCCAGGTGTGTaGGGGTGCTGTTTGAGGAGGTCTAAGAGGTGCAGATTTACTGGA +
Preference number: 1 (lower is better)
Translates to: SHRQTQRLEHLAPGV*GCCLRRSKRCRFTG
Trigger: TCCAGTAAATCTGCACCTCTTAGACCTCCTCAAACAGCACCCCCACACACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTCTGTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR TCA 90 bp TGTAGTCTGAATGAGAAATGTATCCCACAGACAGACCCAGAGACTTaGACACTTGGCCCCAGGTGTGTGGGGGTGCTGTTTGAGGAGGTC +
Preference number: 1 (lower is better)
Translates to: CSLNEKCIPQTDPET*TLGPRCVGVLFEEV
Trigger: GACCTCCTCAAACAGCACCCCCACACACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTCTGTGGGATACATTTCTCATTCAGACTACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR GCA 90 bp TCACAGAGAGCAACTTGCTTTAAGCCAAGAGGAAACAAAGCGGGTTaGTCCCAGCTGACTCGCTGGCCTGCGCTGACTTTTAAGTTCTTT +
Preference number: 1 (lower is better)
Translates to: SQRATCFKPRGNKAG*SQLTRWPALTFKFF
Trigger: AAAGAACTTAAAAGTCAGCGCAGGCCAGCGAGTCAGCTGGGAGCAACCCGCTTTGTTTCCTCTTGGCTTAAAGCAAGTTGCTCTCTGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR TCA 90 bp TCTAAGGCTGAGCATACACCTCAATTCTTCAGAGTTACACAACCTTaGAAGGGAAGTTATAAAAAGGTGTTTTCAATTTATACGGCACAG +
Preference number: 1 (lower is better)
Translates to: SKAEHTPQFFRVTQP*KGSYKKVFSIYTAQ
Trigger: CTGTGCCGTATAAATTGAAAACACCTTTTTATAACTTCCCTTTCAAGGTTGTGTAACTCTGAAGAATTGAGGTGTATGCTCAGCCTTAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR-3UTR TCA 90 bp ATAGATAAAAGTGTCTCCCACTGCCGCCCTTCCTGCTTGCACTATCACACACGGGCCGCTCGGCTTCCCTaGGGGAGTCCTAACTCTCTG +
Preference number: 2 (lower is better)
Translates to: IDKSVSHCRPSCLHYHTRAARLP*GSPNSL
Trigger: CAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGC...CCGTGTGTGATAGTGCAAGCAGGAAGGGCGGCAGTGGGAGACACTTTTATCTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR-3UTR TCA 90 bp TGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGCTCTTGTGTCAGTGTTCATaGTTTGCAGGAACAAGAACT +
Preference number: 2 (lower is better)
Translates to: CQPLGFPEGVLTLWKQKLLCQCS*FAGTRT
Trigger: AGTTCTTGTTCCTGCAAATCATGAACACTGACACAA...GAGCTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR-3UTR CCA 90 bp TTTAGAAAATGTAGTCTGAATGAGAAATGTATCCCACAGACAGACCCAGAGACTTTGGCCCCAGGTGTGTaGGGGTGCTGTTTGAGGAGG +
Preference number: 2 (lower is better)
Translates to: FRKCSLNEKCIPQTDPETLAPGV*GCCLRR
Trigger: CCTCCTCAAACAGCACCCCCACACACCTGGGGCCAA...AGTCTCTGGGTCTGTCTGTGGGATACATTTCTCATTCAGACTACATTTTCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR-3UTR CCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGAGAGACTTGAACACTTaGCCCCAGGTGTGTGGGGGT +
Preference number: 2 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRRDLNT*PQVCGG
Trigger: ACCCCCACACACCTGGGGCCAAGTGTTCAAGTCTCT...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR-3UTR GCA 90 bp AGAAATGTATCCCACAGACAGACCCAGAGACTTGAACACTTGGCCCCAGGTGTGTCAGTGTTCATGATTTaGAGGAACAAGAACTTCAAA +
Preference number: 2 (lower is better)
Translates to: RNVSHRQTQRLEHLAPGVSVFMI*RNKNFK
Trigger: TTTGAAGTTCTTGTTCCTGCAAATCATGAACACTGA...CACACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTCTGTGGGATACATTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR-3UTR CCA 90 bp AGAAATGTATCCCACAGACAGACCCAGAGACTTGAACACTTGGCCCCAGGTGTGTCCATGCATATATTATaGTTCACTAAGGCACAGATT +
Preference number: 2 (lower is better)
Translates to: RNVSHRQTQRLEHLAPGVSMHIL*FTKAQI
Trigger: AATCTGTGCCTTAGTGAACCATAATATATGCATGGA...CACACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTCTGTGGGATACATTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR-3UTR TCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGTTGTGTCAGTGTTCATaGTTTGCAGGAACAAGAACT +
Preference number: 2 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGLCQCS*FAGTRT
Trigger: AGTTCTTGTTCCTGCAAATCATGAACACTGACACAA...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR-3UTR GCA 90 bp TTTAGAAAATGTAGTCTGAATGAGAAATGTATCCCACAGACAGACCCAGAGACTAGGAGGTCTAAGAGGTaGAGATTTACTGGAGCAAGT +
Preference number: 2 (lower is better)
Translates to: FRKCSLNEKCIPQTDPETRRSKR*RFTGAS
Trigger: ACTTGCTCCAGTAAATCTGCACCTCTTAGACCTCCT...AGTCTCTGGGTCTGTCTGTGGGATACATTTCTCATTCAGACTACATTTTCTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR-3UTR GCA 90 bp AGTTCTATTAGACTAGATTTAGATAGACTCCCCTGTGTGATAGACAGCACACGTTCAGTGTTCATGATTTaGAGGAACAAGAACTTCAAA +
Preference number: 2 (lower is better)
Translates to: SSIRLDLDRLPCVIDSTRSVFMI*RNKNFK
Trigger: TTTGAAGTTCTTGTTCCTGCAAATCATGAACACTGA...ACGTGTGCTGTCTATCACACAGGGGAGTCTATCTAAATCTAGTCTAATAGAACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR-3UTR CCA 90 bp AGTTCTATTAGACTAGATTTAGATAGACTCCCCTGTGTGATAGACAGCACACGTTCCATGCATATATTATaGTTCACTAAGGCACAGATT +
Preference number: 2 (lower is better)
Translates to: SSIRLDLDRLPCVIDSTRSMHIL*FTKAQI
Trigger: AATCTGTGCCTTAGTGAACCATAATATATGCATGGA...ACGTGTGCTGTCTATCACACAGGGGAGTCTATCTAAATCTAGTCTAATAGAACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR TCA 72 bp TGTGTGGTGAGCTCGCTGTCAGCCGCTCGGCTTCCCTaGGGGAGTCCTAACTCTCTGGAAACAGAAGCTCAC +
Preference number: 3 (lower is better)
Translates to: CVVSSLSAARLP*GSPNSLETEAH
Trigger: GTGAGCTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACAGCGAGCTCACCACACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR TCA 72 bp TTGAACACTTGGCCCCAGGTGTGTGGGGGTGCTGTTTaGGGAGGTCTAAGAGGTGCAGATTTACTGGAGCAA +
Preference number: 3 (lower is better)
Translates to: LNTWPQVCGGAV*GGLRGADLLEQ
Trigger: TTGCTCCAGTAAATCTGCACCTCTTAGACCTCCTCAAACAGCACCCCCACACACCTGGGGCCAAGTGTTCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR-3UTR CAA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGGACAGACCCAGAGACTaGAACACTTGGCCCCAGGTG +
Preference number: 3 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGDRPRD*NTWPQV
Trigger: CACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTC...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR TCA 72 bp AATGAGAAATGTATCCCACAGACAGACCCAGAGACTTaGACACTTGGCCCCAGGTGTGTGGGGGTGCTGTTT +
Preference number: 3 (lower is better)
Translates to: NEKCIPQTDPET*TLGPRCVGVLF
Trigger: AAACAGCACCCCCACACACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTCTGTGGGATACATTTCTCATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR-3UTR CAA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGCAGAGACTTGAACACTaGGCCCCAGGTGTGTGGGGG +
Preference number: 3 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRQRLEH*APGVWG
Trigger: CCCCCACACACCTGGGGCCAAGTGTTCAAGTCTCTG...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR-3UTR CAA 90 bp TCAACCATAATGAAATCTAGTTATAAAAGAGGGGTTTCTTCAAACGCGAACAGTGACAGACCCAGAGACTaGAACACTTGGCCCCAGGTG +
Preference number: 3 (lower is better)
Translates to: STIMKSSYKRGVSSNANSDRPRD*NTWPQV
Trigger: CACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTC...ACTGTTCGCGTTTGAAGAAACCCCTCTTTTATAACTAGATTTCATTATGGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR-3UTR CAA 90 bp AGTTCTATTAGACTAGATTTAGATAGACTCCCCTGTGTGATAGACAGCACACGTGTCAGTGTTCATGATTaGCAGGAACAAGAACTTCAA +
Preference number: 3 (lower is better)
Translates to: SSIRLDLDRLPCVIDSTRVSVHD*QEQELQ
Trigger: TTGAAGTTCTTGTTCCTGCAAATCATGAACACTGAC...ACGTGTGCTGTCTATCACACAGGGGAGTCTATCTAAATCTAGTCTAATAGAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR-3UTR CAA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGGTCAGTGTTCATGATTaGCAGGAACAAGAACTTCAA +
Preference number: 3 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRVSVHD*QEQELQ
Trigger: TTGAAGTTCTTGTTCCTGCAAATCATGAACACTGAC...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp CGCTGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGCAGCTCCAGGCGGACTaGGCTGTTCTCCCCTTCCGC +
Preference number: 4 (lower is better)
Translates to: RCQPLGFPEGVLTLWKQKQLQAD*AVLPFR
Trigger: GCGGAAGGGGAGAACAGCTCAGTCCGCCTGGAGCTG...CTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp CGCTGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGAGCTTCTCCTGCAGCTaGTGGACCTCCTCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: RCQPLGFPEGVLTLWKQKSFSCS*WTSSCS
Trigger: GCTGCAGGAGGAGGTCCAGCAGCTGCAGGAGAAGCT...CTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACAGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp TGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGCTCAGCACTTGCTCCTTGTaGCTTTCCAGCCGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: CQPLGFPEGVLTLWKQKLSTCSL*LSSRWA
Trigger: AGCCCAGCGGCTGGAAAGGCACAAGGAGCAAGTGCT...GAGCTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp AGAAATGTATCCCACAGACAGACCCAGAGACTTGAACACTTGGCCCCAGGTGTGCCGCTTGCTGAGCCTTaGCCTCCCAGTCCTCAGCAC +
Preference number: 4 (lower is better)
Translates to: RNVSHRQTQRLEHLAPGVPLAEP*PPSPQH
Trigger: GTGCTGAGGACTGGGAGGTCAAGGCTCAGCAAGCGG...CACACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTCTGTGGGATACATTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp ATAGATAAAAGTGTCTCCCACTGCCGCCCTTCCTGCTTGCACTATCACACACGGCCGCTTGCTGAGCCTTaGCCTCCCAGTCCTCAGCAC +
Preference number: 4 (lower is better)
Translates to: IDKSVSHCRPSCLHYHTRPLAEP*PPSPQH
Trigger: GTGCTGAGGACTGGGAGGTCAAGGCTCAGCAAGCGG...CCGTGTGTGATAGTGCAAGCAGGAAGGGCGGCAGTGGGAGACACTTTTATCTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp AGAAATGTATCCCACAGACAGACCCAGAGACTTGAACACTTGGCCCCAGGTGTGCTGCCACCAGGGGTCTaGACCACAGCACGCAGGTTC +
Preference number: 4 (lower is better)
Translates to: RNVSHRQTQRLEHLAPGVLPPGV*TTARRF
Trigger: GAACCTGCGTGCTGTGGTGCAGACCCCTGGTGGCAG...CACACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTCTGTGGGATACATTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGCTCGCCATCCAACGCAAGTaGCAGTCGCTGTATTTCTCG +
Preference number: 4 (lower is better)
Translates to: CQPLGFPEGVLTLWKQKLAIQRK*QSLYFS
Trigger: CGAGAAATACAGCGACTGTCACTTGCGTTGGATGGC...GAGCTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp CGCTGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGGCAGTCACCCTTTTCTaGGCATTTGACTACAGGAGG +
Preference number: 4 (lower is better)
Translates to: RCQPLGFPEGVLTLWKQKAVTLF*AFDYRR
Trigger: CCTCCTGTAGTCAAATGCTCAGAAAAGGGTGACTGC...CTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR CAA 72 bp AATGTATCCCACAGACAGACCCAGAGACTTGAACACTaGGCCCCAGGTGTGTGGGGGTGCTGTTTGAGGAGG +
Preference number: 4 (lower is better)
Translates to: NVSHRQTQRLEH*APGVWGCCLRR
Trigger: CCTCCTCAAACAGCACCCCCACACACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTCTGTGGGATACATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp TGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGCTCGCTGGTTCATCGATTTaGATCCGCTGGCGCCTAAAT +
Preference number: 4 (lower is better)
Translates to: CQPLGFPEGVLTLWKQKLAGSSI*IRWRLN
Trigger: ATTTAGGCGCCAGCGGATGCAAATCGATGAACCAGC...GAGCTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp CGCTGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGAATGTATGGGTCTTCTaGTTGAGGAACCGGGTATGC +
Preference number: 4 (lower is better)
Translates to: RCQPLGFPEGVLTLWKQKNVWVF*LRNRVC
Trigger: GCATACCCGGTTCCTCAACCAGAAGACCCATACATT...CTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACAGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp CGCTGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGTTCTCCTTCAGCAGCTaGATTTCTGTGTCCTTCTCG +
Preference number: 4 (lower is better)
Translates to: RCQPLGFPEGVLTLWKQKFSFSS*ISVSFS
Trigger: CGAGAAGGACACAGAAATCCAGCTGCTGAAGGAGAA...CTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACAGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
3UTR CAA 72 bp CTTGAACACTTGGCCCCAGGTGTGTGGGGGTGCTGTTaGAGGAGGTCTAAGAGGTGCAGATTTACTGGAGCA +
Preference number: 4 (lower is better)
Translates to: LEHLAPGVWGCC*RRSKRCRFTGA
Trigger: TGCTCCAGTAAATCTGCACCTCTTAGACCTCCTCAAACAGCACCCCCACACACCTGGGGCCAAGTGTTCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp AGAAATGTATCCCACAGACAGACCCAGAGACTTGAACACTTGGCCCCAGGTGTGTCAGCTGCTGGGTCATaGCGTCTTTGCCTGAGTCGA +
Preference number: 4 (lower is better)
Translates to: RNVSHRQTQRLEHLAPGVSAAGS*RLCLSR
Trigger: TCGACTCAGGCAAAGACGTCATGACCCAGCAGCTGA...CACACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTCTGTGGGATACATTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp CGCTGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGTTTAATCTCTTTCTTTaGCTCCCCGAGCTCCTTGTC +
Preference number: 4 (lower is better)
Translates to: RCQPLGFPEGVLTLWKQKFNLFL*LPELLV
Trigger: GACAAGGAGCTCGGGGAGGCAAAGAAAGAGATTAAA...CTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACAGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGCTCCTTTCTCCAGGACTTTaGCCTTGTGAACATACTGGT +
Preference number: 4 (lower is better)
Translates to: CQPLGFPEGVLTLWKQKLLSPGL*PCEHTG
Trigger: ACCAGTATGTTCACAAGGTCAAAGTCCTGGAGAAAG...GAGCTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGCTCTCAGTTCTCTTTCTGTaGCTGCAAAACTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: CQPLGFPEGVLTLWKQKLSVLFL*LQNSAA
Trigger: AGCTGCAGAGTTTTGCAGTCACAGAAAGAGAACTGA...GAGCTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp AGAAATGTATCCCACAGACAGACCCAGAGACTTGAACACTTGGCCCCAGGTGTGTCATCAAGCTCCTTGTaGGATGCATCAAGCTGGCGC +
Preference number: 4 (lower is better)
Translates to: RNVSHRQTQRLEHLAPGVSSSSL*DASSWR
Trigger: GCGCCAGCTTGATGCATCTCACAAGGAGCTTGATGA...CACACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTCTGTGGGATACATTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGAGCTTCTCCTGCAGCTaGTGGACCTCCTCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGSFSCS*WTSSCS
Trigger: GCTGCAGGAGGAGGTCCAGCAGCTGCAGGAGAAGCT...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp CGCTGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGGTTCACCTCTTTTTATaGAAAGTCGGTGCTGACAGT +
Preference number: 4 (lower is better)
Translates to: RCQPLGFPEGVLTLWKQKVHLFL*KVGADS
Trigger: ACTGTCAGCACCGACTTTCCATAAAAAGAGGTGAAC...CTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACAGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp AGAAATGTATCCCACAGACAGACCCAGAGACTTGAACACTTGGCCCCAGGTGTGGCATTGATGTGCTCCTaGATCTCCTTCTCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: RNVSHRQTQRLEHLAPGVALMCS*ISFSRR
Trigger: CCTCCTGGAGAAGGAGATCCAGGAGCACATCAATGC...CACACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTCTGTGGGATACATTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp AGAAATGTATCCCACAGACAGACCCAGAGACTTGAACACTTGGCCCCAGGTGTGCTCTCCAGCATGCGCTaGAGTTCATCCCTTTCTCTT +
Preference number: 4 (lower is better)
Translates to: RNVSHRQTQRLEHLAPGVLSSMR*SSSLSL
Trigger: AAGAGAAAGGGATGAACTTCAGCGCATGCTGGAGAG...CACACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTCTGTGGGATACATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp ATAGATAAAAGTGTCTCCCACTGCCGCCCTTCCTGCTTGCACTATCACACACGGCTCTCCAGCATGCGCTaGAGTTCATCCCTTTCTCTT +
Preference number: 4 (lower is better)
Translates to: IDKSVSHCRPSCLHYHTRLSSMR*SSSLSL
Trigger: AAGAGAAAGGGATGAACTTCAGCGCATGCTGGAGAG...CCGTGTGTGATAGTGCAAGCAGGAAGGGCGGCAGTGGGAGACACTTTTATCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGTGTGCTAGCTTCTCCTaGAGCTGCTGGACCTCCTCC +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGCASFS*SCWTSS
Trigger: GGAGGAGGTCCAGCAGCTGCAGGAGAAGCTAGCACA...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGAGCACTTGCTCCTTGTaGCTTTCCAGCCGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGSTCSL*LSSRWA
Trigger: AGCCCAGCGGCTGGAAAGGCACAAGGAGCAAGTGCT...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGCCCGAGCTCCTTGTCTaGTGTCTCCAGCACTTGCTC +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGPELLV*CLQHLL
Trigger: GAGCAAGTGCTGGAGACAGCAGACAAGGAGCTCGGG...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp CGCTGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGTCAGTGATGTACTTATaGACTCTGCTCTTCATCTCT +
Preference number: 4 (lower is better)
Translates to: RCQPLGFPEGVLTLWKQKSVMYL*TLLFIS
Trigger: AGAGATGAAGAGCAGAGTCCATAAGTACATCACTGA...CTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACAGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp TGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGCTCTCGTGGGAGGTTAAATaGGACTGGAACTCTTTATCT +
Preference number: 4 (lower is better)
Translates to: CQPLGFPEGVLTLWKQKLSWEVK*DWNSLS
Trigger: AGATAAAGAGTTCCAGTCCCATTTAACCTCCCACGA...GAGCTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp ATAGATAAAAGTGTCTCCCACTGCCGCCCTTCCTGCTTGCACTATCACACACGGTCCAGTGAGATCTCCTaGTTTTCTCTCGCCATTGTG +
Preference number: 4 (lower is better)
Translates to: IDKSVSHCRPSCLHYHTRSSEIS*FSLAIV
Trigger: CACAATGGCGAGAGAAAATCAGGAGATCTCACTGGA...CCGTGTGTGATAGTGCAAGCAGGAAGGGCGGCAGTGGGAGACACTTTTATCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp AGTTCTATTAGACTAGATTTAGATAGACTCCCCTGTGTGATAGACAGCACACGTTCCCCTTCCGCTTGCTaGGCCTTGACCTCCCAGTCC +
Preference number: 4 (lower is better)
Translates to: SSIRLDLDRLPCVIDSTRSPSAC*ALTSQS
Trigger: GGACTGGGAGGTCAAGGCTCAGCAAGCGGAAGGGGA...ACGTGTGCTGTCTATCACACAGGGGAGTCTATCTAAATCTAGTCTAATAGAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGTCCCCTTCCGCTTGCTaGGCCTTGACCTCCCAGTCC +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRSPSAC*ALTSQS
Trigger: GGACTGGGAGGTCAAGGCTCAGCAAGCGGAAGGGGA...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TTTAGAAAATGTAGTCTGAATGAGAAATGTATCCCACAGACAGACCCAGAGACTCAGCTCCAGGCGGACTaGGCTGTTCTCCCCTTCCGC +
Preference number: 4 (lower is better)
Translates to: FRKCSLNEKCIPQTDPETQLQAD*AVLPFR
Trigger: GCGGAAGGGGAGAACAGCTCAGTCCGCCTGGAGCTG...AGTCTCTGGGTCTGTCTGTGGGATACATTTCTCATTCAGACTACATTTTCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGCTGCCACCAGGGGTCTaGACCACAGCACGCAGGTTC +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRLPPGV*TTARRF
Trigger: GAACCTGCGTGCTGTGGTGCAGACCCCTGGTGGCAG...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp CGCTGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGTTCTCTTTCTGTGACTaGAAAACTCTGCAGCTTTTT +
Preference number: 4 (lower is better)
Translates to: RCQPLGFPEGVLTLWKQKFSFCD*KTLQLF
Trigger: AAAAAGCTGCAGAGTTTTGCAGTCACAGAAAGAGAA...CTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACAGCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp TGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGCTCCAGAGCTTCCTTTTCTaGTGTAATTCTTCTCAACTC +
Preference number: 4 (lower is better)
Translates to: CQPLGFPEGVLTLWKQKLQSFLF*CNSSQL
Trigger: GAGTTGAGAAGAATTACAGCAGAAAAGGAAGCTCTG...GAGCTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGAAGCTCCTTGTGAGATaGATCAAGCTGGCGCCGGAG +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGKLLVR*IKLAPE
Trigger: CTCCGGCGCCAGCTTGATGCATCTCACAAGGAGCTT...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp ATAGATAAAAGTGTCTCCCACTGCCGCCCTTCCTGCTTGCACTATCACACACGGGGCTTTCCTGCAGGTTaGCGATCTTTTCTGTCTTCT +
Preference number: 4 (lower is better)
Translates to: IDKSVSHCRPSCLHYHTRGFPAG*RSFLSS
Trigger: AGAAGACAGAAAAGATCGCCAACCTGCAGGAAAGCC...CCGTGTGTGATAGTGCAAGCAGGAAGGGCGGCAGTGGGAGACACTTTTATCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp AAAGGTGTTTTCAATTTATACGGCACAGGGATGGTGTTGACATACTATTCGGAAGAACCGGGTATGCGCTaGCTTCTGAGGGTGGGGCTG +
Preference number: 4 (lower is better)
Translates to: KGVFNLYGTGMVLTYYSEEPGMR*LLRVGL
Trigger: CAGCCCCACCCTCAGAAGTCAGCGCATACCCGGTTC...TTCCGAATAGTATGTCAACACCATCCCTGTGCCGTATAAATTGAAAACACCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGATGGAAAGTCGGTGCTaGCAGTCATCAAGTGAGCGC +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGMESRC*QSSSER
Trigger: GCGCTCACTTGATGACTGTCAGCACCGACTTTCCAT...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp AGAAATGTATCCCACAGACAGACCCAGAGACTTGAACACTTGGCCCCAGGTGTGGATCTGAGACTCGTATaGGTGATGTGCATTGATGTG +
Preference number: 4 (lower is better)
Translates to: RNVSHRQTQRLEHLAPGVDLRLV*VMCIDV
Trigger: CACATCAATGCACATCACGCATACGAGTCTCAGATC...CACACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTCTGTGGGATACATTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp CGCTGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGATTTTAATTTGCTCTTaGGCTGATTCAAGTTCACCT +
Preference number: 4 (lower is better)
Translates to: RCQPLGFPEGVLTLWKQKILICS*ADSSSP
Trigger: AGGTGAACTTGAATCAGCCCAAGAGCAAATTAAAAT...CTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACAGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGCAATGTTTCTTTTCCTaGCACCAGGGGTCTGCACCA +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGQCFFS*HQGSAP
Trigger: TGGTGCAGACCCCTGGTGGCAGGAAAAGAAACATTG...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGCCGCTGGCGCCTAAATaGAATGTTTCTTTTCCTGCC +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGPLAPK*NVSFPA
Trigger: GGCAGGAAAAGAAACATTGCATTTAGGCGCCAGCGG...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp ATAGATAAAAGTGTCTCCCACTGCCGCCCTTCCTGCTTGCACTATCACACACGGTCATCCACAGTCTCCTaGAGAAAGTCCTTTTCTTTG +
Preference number: 4 (lower is better)
Translates to: IDKSVSHCRPSCLHYHTRSSTVS*RKSFSL
Trigger: CAAAGAAAAGGACTTTCTCCAGGAGACTGTGGATGA...CCGTGTGTGATAGTGCAAGCAGGAAGGGCGGCAGTGGGAGACACTTTTATCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGTCCTCCTGCAGCTCCTaGATCCTGTTGTCAGCCACT +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRSSCSS*ILLSAT
Trigger: AGTGGCTGACAACAGGATTCAGGAGCTGCAGGAGGA...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp ATAGATAAAAGTGTCTCCCACTGCCGCCCTTCCTGCTTGCACTATCACACACGGACATGGCTAAGCTTTTaGGCTTGGAGTTTTGATTTG +
Preference number: 4 (lower is better)
Translates to: IDKSVSHCRPSCLHYHTRTWLSF*AWSFDL
Trigger: CAAATCAAAACTCCAAGCTCAAAAGCTTAGCCATGT...CCGTGTGTGATAGTGCAAGCAGGAAGGGCGGCAGTGGGAGACACTTTTATCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGTCCAGTGAGATCTCCTaGTTTTCTCTCGCCATTGTG +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGSSEIS*FSLAIV
Trigger: CACAATGGCGAGAGAAAATCAGGAGATCTCACTGGA...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp TTTAGAAAATGTAGTCTGAATGAGAAATGTATCCCACAGACAGACCCAGAGACTCCCGAGCTCCTTGTCTaGTGTCTCCAGCACTTGCTC +
Preference number: 4 (lower is better)
Translates to: FRKCSLNEKCIPQTDPETPELLV*CLQHLL
Trigger: GAGCAAGTGCTGGAGACAGCAGACAAGGAGCTCGGG...AGTCTCTGGGTCTGTCTGTGGGATACATTTCTCATTCAGACTACATTTTCTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGAATGTATGGGTCTTCTaGTTGAGGAACCGGGTATGC +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGNVWVF*LRNRVC
Trigger: GCATACCCGGTTCCTCAACCAGAAGACCCATACATT...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGCTTTCTCCAGGACTTTaGCCTTGTGAACATACTGGT +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGLSPGL*PCEHTG
Trigger: ACCAGTATGTTCACAAGGTCAAAGTCCTGGAGAAAG...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGGCCATCCAACGCAAGTaGCAGTCGCTGTATTTCTCG +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRAIQRK*QSLYFS
Trigger: CGAGAAATACAGCGACTGTCACTTGCGTTGGATGGC...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TTTAGAAAATGTAGTCTGAATGAGAAATGTATCCCACAGACAGACCCAGAGACTTCAGCTGCTGGGTCATaGCGTCTTTGCCTGAGTCGA +
Preference number: 4 (lower is better)
Translates to: FRKCSLNEKCIPQTDPETSAAGS*RLCLSR
Trigger: TCGACTCAGGCAAAGACGTCATGACCCAGCAGCTGA...AGTCTCTGGGTCTGTCTGTGGGATACATTTCTCATTCAGACTACATTTTCTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp AAAGGTGTTTTCAATTTATACGGCACAGGGATGGTGTTGACATACTATTCGGAAGGTGAACGTCCGTGCTaGAGTCACCCTTTTCTGAGC +
Preference number: 4 (lower is better)
Translates to: KGVFNLYGTGMVLTYYSEGERPC*SHPFLS
Trigger: GCTCAGAAAAGGGTGACTGCAGCACGGACGTTCACC...TTCCGAATAGTATGTCAACACCATCCCTGTGCCGTATAAATTGAAAACACCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGTGCACCGTCATCCTGTaGCTGAGATTCTCTAGTTTT +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGCTVIL*LRFSSF
Trigger: AAAACTAGAGAATCTCAGCCACAGGATGACGGTGCA...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp ATAGATAAAAGTGTCTCCCACTGCCGCCCTTCCTGCTTGCACTATCACACACGGGAGGTTAAATGGGACTaGAACTCTTTATCTCTGTTT +
Preference number: 4 (lower is better)
Translates to: IDKSVSHCRPSCLHYHTREVKWD*NSLSLF
Trigger: AAACAGAGATAAAGAGTTCCAGTCCCATTTAACCTC...CCGTGTGTGATAGTGCAAGCAGGAAGGGCGGCAGTGGGAGACACTTTTATCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp GCACGAAACCTAAATAGTGCAAGAATCCTTCCATGCATATATTATGGTTCACTATCCTCCTGCAGCTCCTaGATCCTGTTGTCAGCCACT +
Preference number: 4 (lower is better)
Translates to: ARNLNSARILPCIYYGSLSSCSS*ILLSAT
Trigger: AGTGGCTGACAACAGGATTCAGGAGCTGCAGGAGGA...TAGTGAACCATAATATATGCATGGAAGGATTCTTGCACTATTTAGGTTTCGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp AGTTCTATTAGACTAGATTTAGATAGACTCCCCTGTGTGATAGACAGCACACGTGCAGTCACCCTTTTCTaGGCATTTGACTACAGGAGG +
Preference number: 4 (lower is better)
Translates to: SSIRLDLDRLPCVIDSTRAVTLF*AFDYRR
Trigger: CCTCCTGTAGTCAAATGCTCAGAAAAGGGTGACTGC...ACGTGTGCTGTCTATCACACAGGGGAGTCTATCTAAATCTAGTCTAATAGAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp AGTTCTATTAGACTAGATTTAGATAGACTCCCCTGTGTGATAGACAGCACACGTCCGCTGGCGCCTAAATaGAATGTTTCTTTTCCTGCC +
Preference number: 4 (lower is better)
Translates to: SSIRLDLDRLPCVIDSTRPLAPK*NVSFPA
Trigger: GGCAGGAAAAGAAACATTGCATTTAGGCGCCAGCGG...ACGTGTGCTGTCTATCACACAGGGGAGTCTATCTAAATCTAGTCTAATAGAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp TCAACCATAATGAAATCTAGTTATAAAAGAGGGGTTTCTTCAAACGCGAACAGTTGTGCTAGCTTCTCCTaGAGCTGCTGGACCTCCTCC +
Preference number: 4 (lower is better)
Translates to: STIMKSSYKRGVSSNANSCASFS*SCWTSS
Trigger: GGAGGAGGTCCAGCAGCTGCAGGAGAAGCTAGCACA...ACTGTTCGCGTTTGAAGAAACCCCTCTTTTATAACTAGATTTCATTATGGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp GCACGAAACCTAAATAGTGCAAGAATCCTTCCATGCATATATTATGGTTCACTAGGTGAACGTCCGTGCTaGAGTCACCCTTTTCTGAGC +
Preference number: 4 (lower is better)
Translates to: ARNLNSARILPCIYYGSLGERPC*SHPFLS
Trigger: GCTCAGAAAAGGGTGACTGCAGCACGGACGTTCACC...TAGTGAACCATAATATATGCATGGAAGGATTCTTGCACTATTTAGGTTTCGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp GCACGAAACCTAAATAGTGCAAGAATCCTTCCATGCATATATTATGGTTCACTAAAGCTCCTTGTGAGATaGATCAAGCTGGCGCCGGAG +
Preference number: 4 (lower is better)
Translates to: ARNLNSARILPCIYYGSLKLLVR*IKLAPE
Trigger: CTCCGGCGCCAGCTTGATGCATCTCACAAGGAGCTT...TAGTGAACCATAATATATGCATGGAAGGATTCTTGCACTATTTAGGTTTCGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGCCAGCTCTAGGCTTTTaGAATTCAGCTGCTGGGTCA +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRPALGF*NSAAGS
Trigger: TGACCCAGCAGCTGAATTCCAAAAGCCTAGAGCTGG...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGCGCAGGTTCTTCTCTTaGAGCTGCTGGATCTTTTCA +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRRRFFS*SCWIFS
Trigger: TGAAAAGATCCAGCAGCTTCAAGAGAAGAACCTGCG...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGTTTCCTTGGTTTCCATaGGCTCTTGAATATGCTTCT +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGFPWFP*ALEYAS
Trigger: AGAAGCATATTCAAGAGCTCATGGAAACCAAGGAAA...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGACATGGCTAAGCTTTTaGGCTTGGAGTTTTGATTTG +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGTWLSF*AWSFDL
Trigger: CAAATCAAAACTCCAAGCTCAAAAGCTTAGCCATGT...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp GCACGAAACCTAAATAGTGCAAGAATCCTTCCATGCATATATTATGGTTCACTAATGGAAAGTCGGTGCTaGCAGTCATCAAGTGAGCGC +
Preference number: 4 (lower is better)
Translates to: ARNLNSARILPCIYYGSLMESRC*QSSSER
Trigger: GCGCTCACTTGATGACTGTCAGCACCGACTTTCCAT...TAGTGAACCATAATATATGCATGGAAGGATTCTTGCACTATTTAGGTTTCGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGAATTTGCTCTTGGGCTaGTTCAAGTTCACCTCTTTT +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGNLLLG*FKFTSF
Trigger: AAAAGAGGTGAACTTGAATCAGCCCAAGAGCAAATT...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp AGTTCTATTAGACTAGATTTAGATAGACTCCCCTGTGTGATAGACAGCACACGTCCGTCATCCTGTGGCTaGGATTCTCTAGTTTTTGCT +
Preference number: 4 (lower is better)
Translates to: SSIRLDLDRLPCVIDSTRPSSCG*DSLVFA
Trigger: AGCAAAAACTAGAGAATCTCAGCCACAGGATGACGG...ACGTGTGCTGTCTATCACACAGGGGAGTCTATCTAAATCTAGTCTAATAGAACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGCCGTCATCCTGTGGCTaGGATTCTCTAGTTTTTGCT +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRPSSCG*DSLVFA
Trigger: AGCAAAAACTAGAGAATCTCAGCCACAGGATGACGG...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGTGCTTCCAGCTCCAGTaGGATCTCCTGATTTTCTCT +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRCFQLQ*DLLIFS
Trigger: AGAGAAAATCAGGAGATCTCACTGGAGCTGGAAGCA...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGAGCTCCTCTTCTAACTaGGACATGGCCTTAGCCATT +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRSSSSN*DMALAI
Trigger: AATGGCTAAGGCCATGTCTCAGTTAGAAGAGGAGCT...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp AGTTCTATTAGACTAGATTTAGATAGACTCCCCTGTGTGATAGACAGCACACGTCGCTGGATTAGATGCTaGAGTTTCTCCAGCTCTTTC +
Preference number: 4 (lower is better)
Translates to: SSIRLDLDRLPCVIDSTRRWIRC*SFSSSF
Trigger: GAAAGAGCTGGAGAAACTGCAGCATCTAATCCAGCG...ACGTGTGCTGTCTATCACACAGGGGAGTCTATCTAAATCTAGTCTAATAGAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGCGAATCTCTCCAGCATaGGCTGAAGTTCATCCCTTT +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRRISPA*AEVHPF
Trigger: AAAGGGATGAACTTCAGCGCATGCTGGAGAGATTCG...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGCTCGTATGCGTGATGTaGATTGATGTGCTCCTGGAT +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRLVCVM*IDVLLD
Trigger: ATCCAGGAGCACATCAATGCACATCACGCATACGAG...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp AAAGGTGTTTTCAATTTATACGGCACAGGGATGGTGTTGACATACTATTCGGAAGAGGTCCGCAATGTATaGGTCTTCTGGTTGAGGAAC +
Preference number: 4 (lower is better)
Translates to: KGVFNLYGTGMVLTYYSEEVRNV*VFWLRN
Trigger: GTTCCTCAACCAGAAGACCCATACATTGCGGACCTC...TTCCGAATAGTATGTCAACACCATCCCTGTGCCGTATAAATTGAAAACACCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGTGTCCATCACTCCAATaGTCTTCTTCATGGCGTGAG +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRCPSLQ*SSSWRE
Trigger: CTCACGCCATGAAGAAGACCATTGGAGTGATGGACA...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp ACACACGGCGATAACTATTTTATCCAGATGAGATCACTAGGCACATTTATTTCCCCAGCTCTAGGCTTTTaGAATTCAGCTGCTGGGTCA +
Preference number: 4 (lower is better)
Translates to: THGDNYFIQMRSLGTFISPALGF*NSAAGS
Trigger: TGACCCAGCAGCTGAATTCCAAAAGCCTAGAGCTGG...GGAAATAAATGTGCCTAGTGATCTCATCTGGATAAAATAGTTATCGCCGTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp AGTTCTATTAGACTAGATTTAGATAGACTCCCCTGTGTGATAGACAGCACACGTTTCTCCTTCAGCAGCTaGATTTCTGTGTCCTTCTCG +
Preference number: 4 (lower is better)
Translates to: SSIRLDLDRLPCVIDSTRFSFSS*ISVSFS
Trigger: CGAGAAGGACACAGAAATCCAGCTGCTGAAGGAGAA...ACGTGTGCTGTCTATCACACAGGGGAGTCTATCTAAATCTAGTCTAATAGAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp AAAGGTGTTTTCAATTTATACGGCACAGGGATGGTGTTGACATACTATTCGGAACGCAGGTTCTTCTCTTaGAGCTGCTGGATCTTTTCA +
Preference number: 4 (lower is better)
Translates to: KGVFNLYGTGMVLTYYSERRFFS*SCWIFS
Trigger: TGAAAAGATCCAGCAGCTTCAAGAGAAGAACCTGCG...TTCCGAATAGTATGTCAACACCATCCCTGTGCCGTATAAATTGAAAACACCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGTGTTTTCTGATGAGATaGGTCACCAGTCACATGGCT +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRCFLMR*VTSHMA
Trigger: AGCCATGTGACTGGTGACTCATCTCATCAGAAAACA...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TCAACCATAATGAAATCTAGTTATAAAAGAGGGGTTTCTTCAAACGCGAACAGTTCATCAAGCTCCTTGTaGGATGCATCAAGCTGGCGC +
Preference number: 4 (lower is better)
Translates to: STIMKSSYKRGVSSNANSSSSSL*DASSWR
Trigger: GCGCCAGCTTGATGCATCTCACAAGGAGCTTGATGA...ACTGTTCGCGTTTGAAGAAACCCCTCTTTTATAACTAGATTTCATTATGGTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TTTAGAAAATGTAGTCTGAATGAGAAATGTATCCCACAGACAGACCCAGAGACTTGCTTCCAGCTCCAGTaGGATCTCCTGATTTTCTCT +
Preference number: 4 (lower is better)
Translates to: FRKCSLNEKCIPQTDPETCFQLQ*DLLIFS
Trigger: AGAGAAAATCAGGAGATCTCACTGGAGCTGGAAGCA...AGTCTCTGGGTCTGTCTGTGGGATACATTTCTCATTCAGACTACATTTTCTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TTTAGAAAATGTAGTCTGAATGAGAAATGTATCCCACAGACAGACCCAGAGACTAGCTCCTCTTCTAACTaGGACATGGCCTTAGCCATT +
Preference number: 4 (lower is better)
Translates to: FRKCSLNEKCIPQTDPETSSSSN*DMALAI
Trigger: AATGGCTAAGGCCATGTCTCAGTTAGAAGAGGAGCT...AGTCTCTGGGTCTGTCTGTGGGATACATTTCTCATTCAGACTACATTTTCTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp GCACGAAACCTAAATAGTGCAAGAATCCTTCCATGCATATATTATGGTTCACTAGCTGGTTCATCGATTTaGATCCGCTGGCGCCTAAAT +
Preference number: 4 (lower is better)
Translates to: ARNLNSARILPCIYYGSLAGSSI*IRWRLN
Trigger: ATTTAGGCGCCAGCGGATGCAAATCGATGAACCAGC...TAGTGAACCATAATATATGCATGGAAGGATTCTTGCACTATTTAGGTTTCGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGAGCTCTTTATTAGCTTaGTGGAGGAAGTCAACCTGG +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRSSLLA*WRKSTW
Trigger: CCAGGTTGACTTCCTCCAGCAAGCTAATAAAGAGCT...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGTTCTCTTTCTGTGACTaGAAAACTCTGCAGCTTTTT +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGFSFCD*KTLQLF
Trigger: AAAAAGCTGCAGAGTTTTGCAGTCACAGAAAGAGAA...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp AAAGGTGTTTTCAATTTATACGGCACAGGGATGGTGTTGACATACTATTCGGAAGGCTTTCCTGCAGGTTaGCGATCTTTTCTGTCTTCT +
Preference number: 4 (lower is better)
Translates to: KGVFNLYGTGMVLTYYSEGFPAG*RSFLSS
Trigger: AGAAGACAGAAAAGATCGCCAACCTGCAGGAAAGCC...TTCCGAATAGTATGTCAACACCATCCCTGTGCCGTATAAATTGAAAACACCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp TCAACCATAATGAAATCTAGTTATAAAAGAGGGGTTTCTTCAAACGCGAACAGTGCATTGATGTGCTCCTaGATCTCCTTCTCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: STIMKSSYKRGVSSNANSALMCS*ISFSRR
Trigger: CCTCCTGGAGAAGGAGATCCAGGAGCACATCAATGC...ACTGTTCGCGTTTGAAGAAACCCCTCTTTTATAACTAGATTTCATTATGGTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp ACACACGGCGATAACTATTTTATCCAGATGAGATCACTAGGCACATTTATTTCCTCAGTTCTCTTTCTGTaGCTGCAAAACTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: THGDNYFIQMRSLGTFISSVLFL*LQNSAA
Trigger: AGCTGCAGAGTTTTGCAGTCACAGAAAGAGAACTGA...GGAAATAAATGTGCCTAGTGATCTCATCTGGATAAAATAGTTATCGCCGTGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp ACACACGGCGATAACTATTTTATCCAGATGAGATCACTAGGCACATTTATTTCCAGCTCTTTATTAGCTTaGTGGAGGAAGTCAACCTGG +
Preference number: 4 (lower is better)
Translates to: THGDNYFIQMRSLGTFISSSLLA*WRKSTW
Trigger: CCAGGTTGACTTCCTCCAGCAAGCTAATAAAGAGCT...GGAAATAAATGTGCCTAGTGATCTCATCTGGATAAAATAGTTATCGCCGTGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp GCACGAAACCTAAATAGTGCAAGAATCCTTCCATGCATATATTATGGTTCACTACGAATCTCTCCAGCATaGGCTGAAGTTCATCCCTTT +
Preference number: 4 (lower is better)
Translates to: ARNLNSARILPCIYYGSLRISPA*AEVHPF
Trigger: AAAGGGATGAACTTCAGCGCATGCTGGAGAGATTCG...TAGTGAACCATAATATATGCATGGAAGGATTCTTGCACTATTTAGGTTTCGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp GCACGAAACCTAAATAGTGCAAGAATCCTTCCATGCATATATTATGGTTCACTACTCGTATGCGTGATGTaGATTGATGTGCTCCTGGAT +
Preference number: 4 (lower is better)
Translates to: ARNLNSARILPCIYYGSLLVCVM*IDVLLD
Trigger: ATCCAGGAGCACATCAATGCACATCACGCATACGAG...TAGTGAACCATAATATATGCATGGAAGGATTCTTGCACTATTTAGGTTTCGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp ACACACGGCGATAACTATTTTATCCAGATGAGATCACTAGGCACATTTATTTCCGATCTGAGACTCGTATaGGTGATGTGCATTGATGTG +
Preference number: 4 (lower is better)
Translates to: THGDNYFIQMRSLGTFISDLRLV*VMCIDV
Trigger: CACATCAATGCACATCACGCATACGAGTCTCAGATC...GGAAATAAATGTGCCTAGTGATCTCATCTGGATAAAATAGTTATCGCCGTGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp TCAACCATAATGAAATCTAGTTATAAAAGAGGGGTTTCTTCAAACGCGAACAGTGAGGTCCGCAATGTATaGGTCTTCTGGTTGAGGAAC +
Preference number: 4 (lower is better)
Translates to: STIMKSSYKRGVSSNANSEVRNV*VFWLRN
Trigger: GTTCCTCAACCAGAAGACCCATACATTGCGGACCTC...ACTGTTCGCGTTTGAAGAAACCCCTCTTTTATAACTAGATTTCATTATGGTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp ACACACGGCGATAACTATTTTATCCAGATGAGATCACTAGGCACATTTATTTCCCTCTCCTTCTCCTTATaGCTTAAGTCCAATTCCCAC +
Preference number: 4 (lower is better)
Translates to: THGDNYFIQMRSLGTFISLSFSL*LKSNSH
Trigger: GTGGGAATTGGACTTAAGCCATAAGGAGAAGGAGAG...GGAAATAAATGTGCCTAGTGATCTCATCTGGATAAAATAGTTATCGCCGTGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGGTTCACCTCTTTTTATaGAAAGTCGGTGCTGACAGT +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRVHLFL*KVGADS
Trigger: ACTGTCAGCACCGACTTTCCATAAAAAGAGGTGAAC...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGATTTTAATTTGCTCTTaGGCTGATTCAAGTTCACCT +
Preference number: 4 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGILICS*ADSSSP
Trigger: AGGTGAACTTGAATCAGCCCAAGAGCAAATTAAAAT...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp AAAGGTGTTTTCAATTTATACGGCACAGGGATGGTGTTGACATACTATTCGGAATGCACCGTCATCCTGTaGCTGAGATTCTCTAGTTTT +
Preference number: 4 (lower is better)
Translates to: KGVFNLYGTGMVLTYYSECTVIL*LRFSSF
Trigger: AAAACTAGAGAATCTCAGCCACAGGATGACGGTGCA...TTCCGAATAGTATGTCAACACCATCCCTGTGCCGTATAAATTGAAAACACCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGTCATCCACAGTCTCCTaGAGAAAGTCCTTTTCTTTG +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRSSTVS*RKSFSL
Trigger: CAAAGAAAAGGACTTTCTCCAGGAGACTGTGGATGA...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp GCACGAAACCTAAATAGTGCAAGAATCCTTCCATGCATATATTATGGTTCACTATTTAATCTCTTTCTTTaGCTCCCCGAGCTCCTTGTC +
Preference number: 4 (lower is better)
Translates to: ARNLNSARILPCIYYGSLFNLFL*LPELLV
Trigger: GACAAGGAGCTCGGGGAGGCAAAGAAAGAGATTAAA...TAGTGAACCATAATATATGCATGGAAGGATTCTTGCACTATTTAGGTTTCGTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp TCAACCATAATGAAATCTAGTTATAAAAGAGGGGTTTCTTCAAACGCGAACAGTCGCTGGATTAGATGCTaGAGTTTCTCCAGCTCTTTC +
Preference number: 4 (lower is better)
Translates to: STIMKSSYKRGVSSNANSRWIRC*SFSSSF
Trigger: GAAAGAGCTGGAGAAACTGCAGCATCTAATCCAGCG...ACTGTTCGCGTTTGAAGAAACCCCTCTTTTATAACTAGATTTCATTATGGTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp TTTAGAAAATGTAGTCTGAATGAGAAATGTATCCCACAGACAGACCCAGAGACTTCGTGGGAGGTTAAATaGGACTGGAACTCTTTATCT +
Preference number: 4 (lower is better)
Translates to: FRKCSLNEKCIPQTDPETSWEVK*DWNSLS
Trigger: AGATAAAGAGTTCCAGTCCCATTTAACCTCCCACGA...AGTCTCTGGGTCTGTCTGTGGGATACATTTCTCATTCAGACTACATTTTCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TTTAGAAAATGTAGTCTGAATGAGAAATGTATCCCACAGACAGACCCAGAGACTACCTGGACATTTAAGTaGGCAATGAGTTTCTCATTG +
Preference number: 4 (lower is better)
Translates to: FRKCSLNEKCIPQTDPETTWTFK*AMSFSL
Trigger: CAATGAGAAACTCATTGCTCACTTAAATGTCCAGGT...AGTCTCTGGGTCTGTCTGTGGGATACATTTCTCATTCAGACTACATTTTCTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TCAACCATAATGAAATCTAGTTATAAAAGAGGGGTTTCTTCAAACGCGAACAGTTGTTTTCTGATGAGATaGGTCACCAGTCACATGGCT +
Preference number: 4 (lower is better)
Translates to: STIMKSSYKRGVSSNANSCFLMR*VTSHMA
Trigger: AGCCATGTGACTGGTGACTCATCTCATCAGAAAACA...ACTGTTCGCGTTTGAAGAAACCCCTCTTTTATAACTAGATTTCATTATGGTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp AAAGGTGTTTTCAATTTATACGGCACAGGGATGGTGTTGACATACTATTCGGAACAGAGCTTCCTTTTCTaGTGTAATTCTTCTCAACTC +
Preference number: 4 (lower is better)
Translates to: KGVFNLYGTGMVLTYYSEQSFLF*CNSSQL
Trigger: GAGTTGAGAAGAATTACAGCAGAAAAGGAAGCTCTG...TTCCGAATAGTATGTCAACACCATCCCTGTGCCGTATAAATTGAAAACACCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp AGTTCTATTAGACTAGATTTAGATAGACTCCCCTGTGTGATAGACAGCACACGTTCCAGCATTTTAATTTaGTCTTGGGCTGATTCAAGT +
Preference number: 4 (lower is better)
Translates to: SSIRLDLDRLPCVIDSTRSSILI*SWADSS
Trigger: ACTTGAATCAGCCCAAGAGCAAATTAAAATGCTGGA...ACGTGTGCTGTCTATCACACAGGGGAGTCTATCTAAATCTAGTCTAATAGAACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGTCCAGCATTTTAATTTaGTCTTGGGCTGATTCAAGT +
Preference number: 4 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRSSILI*SWADSS
Trigger: ACTTGAATCAGCCCAAGAGCAAATTAAAATGCTGGA...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp ACACACGGCGATAACTATTTTATCCAGATGAGATCACTAGGCACATTTATTTCCTCAGTGATGTACTTATaGACTCTGCTCTTCATCTCT +
Preference number: 4 (lower is better)
Translates to: THGDNYFIQMRSLGTFISSVMYL*TLLFIS
Trigger: AGAGATGAAGAGCAGAGTCCATAAGTACATCACTGA...GGAAATAAATGTGCCTAGTGATCTCATCTGGATAAAATAGTTATCGCCGTGTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp GCACGAAACCTAAATAGTGCAAGAATCCTTCCATGCATATATTATGGTTCACTAACCTGGACATTTAAGTaGGCAATGAGTTTCTCATTG +
Preference number: 4 (lower is better)
Translates to: ARNLNSARILPCIYYGSLTWTFK*AMSFSL
Trigger: CAATGAGAAACTCATTGCTCACTTAAATGTCCAGGT...TAGTGAACCATAATATATGCATGGAAGGATTCTTGCACTATTTAGGTTTCGTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp GCACGAAACCTAAATAGTGCAAGAATCCTTCCATGCATATATTATGGTTCACTAAATTTGCTCTTGGGCTaGTTCAAGTTCACCTCTTTT +
Preference number: 4 (lower is better)
Translates to: ARNLNSARILPCIYYGSLNLLLG*FKFTSF
Trigger: AAAAGAGGTGAACTTGAATCAGCCCAAGAGCAAATT...TAGTGAACCATAATATATGCATGGAAGGATTCTTGCACTATTTAGGTTTCGTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp ACACACGGCGATAACTATTTTATCCAGATGAGATCACTAGGCACATTTATTTCCGAGGTTAAATGGGACTaGAACTCTTTATCTCTGTTT +
Preference number: 4 (lower is better)
Translates to: THGDNYFIQMRSLGTFISEVKWD*NSLSLF
Trigger: AAACAGAGATAAAGAGTTCCAGTCCCATTTAACCTC...GGAAATAAATGTGCCTAGTGATCTCATCTGGATAAAATAGTTATCGCCGTGTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR TCA 90 bp TCAACCATAATGAAATCTAGTTATAAAAGAGGGGTTTCTTCAAACGCGAACAGTTTTCCTTGGTTTCCATaGGCTCTTGAATATGCTTCT +
Preference number: 4 (lower is better)
Translates to: STIMKSSYKRGVSSNANSFPWFP*ALEYAS
Trigger: AGAAGCATATTCAAGAGCTCATGGAAACCAAGGAAA...ACTGTTCGCGTTTGAAGAAACCCCTCTTTTATAACTAGATTTCATTATGGTTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CCA 90 bp GCACGAAACCTAAATAGTGCAAGAATCCTTCCATGCATATATTATGGTTCACTAACTGTGACCTTCAACTaGGCAATGACTTTTTCTTTA +
Preference number: 4 (lower is better)
Translates to: ARNLNSARILPCIYYGSLTVTFN*AMTFSL
Trigger: TAAAGAAAAAGTCATTGCCCAGTTGAAGGTCACAGT...TAGTGAACCATAATATATGCATGGAAGGATTCTTGCACTATTTAGGTTTCGTGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp GCACGAAACCTAAATAGTGCAAGAATCCTTCCATGCATATATTATGGTTCACTATGTACTTATGGACTCTaGTCTTCATCTCTTCTTTTT +
Preference number: 4 (lower is better)
Translates to: ARNLNSARILPCIYYGSLCTYGL*SSSLLF
Trigger: AAAAAGAAGAGATGAAGAGCAGAGTCCATAAGTACA...TAGTGAACCATAATATATGCATGGAAGGATTCTTGCACTATTTAGGTTTCGTGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR GCA 90 bp TCAACCATAATGAAATCTAGTTATAAAAGAGGGGTTTCTTCAAACGCGAACAGTTGTACTTATGGACTCTaGTCTTCATCTCTTCTTTTT +
Preference number: 4 (lower is better)
Translates to: STIMKSSYKRGVSSNANSCTYGL*SSSLLF
Trigger: AAAAAGAAGAGATGAAGAGCAGAGTCCATAAGTACA...ACTGTTCGCGTTTGAAGAAACCCCTCTTTTATAACTAGATTTCATTATGGTTGA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp CGCTGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGGCCTCCCCGAGCTCCTaGTCTGCTGTCTCCAGCACT +
Preference number: 5 (lower is better)
Translates to: RCQPLGFPEGVLTLWKQKASPSS*SAVSST
Trigger: AGTGCTGGAGACAGCAGACAAGGAGCTCGGGGAGGC...CTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 90 bp GCTCCAGGCGGACTGAGCTGTTCTCCCCTTCCGCTTGCTGAGCCTTaGCCTCCCAGTCCTCAGCACGGCTGTGGAGCATCTGGAATCTAT +
Preference number: 5 (lower is better)
Translates to: APGGLSCSPLPLAEP*PPSPQHGCGASGIY
Trigger: ATAGATTCCAGATGCTCCACAGCCGTGCTGAGGACTGGGAGGTCAAGGCTCAGCAAGCGGAAGGGGAGAACAGCTCAGTCCGCCTGGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 90 bp GGTCCGCAATGTATGGGTCTTCTGGTTGAGGAACCGGGTATGCGCTaGCTTCTGAGGGTGGGGCTGGTTCATCGATTTGCATCCGCTGGC +
Preference number: 5 (lower is better)
Translates to: GPQCMGLLVEEPGMR*LLRVGLVHRFASAG
Trigger: GCCAGCGGATGCAAATCGATGAACCAGCCCCACCCTCAGAAGTCAGCGCATACCCGGTTCCTCAACCAGAAGACCCATACATTGCGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CCA 90 bp TTGTCTGCTGTCTCCAGCACTTGCTCCTTGTGCCTTTCCAGCCGCTaGGCTAACTGGTCGATCTCGGTTAGCTCCTGGCAGAGCTTCTCG +
Preference number: 5 (lower is better)
Translates to: LSAVSSTCSLCLSSR*ANWSISVSSWQSFS
Trigger: CGAGAAGCTCTGCCAGGAGCTAACCGAGATCGACCAGTTAGCCCAGCGGCTGGAAAGGCACAAGGAGCAAGTGCTGGAGACAGCAGACAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 90 bp TTGTCAGCCACTTGCAGGAGGTCCGCAATGTATGGGTCTTCTGGTTaGGGAACCGGGTATGCGCTGACTTCTGAGGGTGGGGCTGGTTCA +
Preference number: 5 (lower is better)
Translates to: LSATCRRSAMYGSSG*GTGYALTSEGGAGS
Trigger: TGAACCAGCCCCACCCTCAGAAGTCAGCGCATACCCGGTTCCTCAACCAGAAGACCCATACATTGCGGACCTCCTGCAAGTGGCTGACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CCA 90 bp GTCTCCAGCACTTGCTCCTTGTGCCTTTCCAGCCGCTGGGCTAACTaGTCGATCTCGGTTAGCTCCTGGCAGAGCTTCTCGTTTCTGTTG +
Preference number: 5 (lower is better)
Translates to: VSSTCSLCLSSRWAN*SISVSSWQSFSFLL
Trigger: CAACAGAAACGAGAAGCTCTGCCAGGAGCTAACCGAGATCGACCAGTTAGCCCAGCGGCTGGAAAGGCACAAGGAGCAAGTGCTGGAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 90 bp AATGTATGGGTCTTCTGGTTGAGGAACCGGGTATGCGCTGACTTCTaGGGGTGGGGCTGGTTCATCGATTTGCATCCGCTGGCGCCTAAA +
Preference number: 5 (lower is better)
Translates to: NVWVFWLRNRVCADF*GWGWFIDLHPLAPK
Trigger: TTTAGGCGCCAGCGGATGCAAATCGATGAACCAGCCCCACCCTCAGAAGTCAGCGCATACCCGGTTCCTCAACCAGAAGACCCATACATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 90 bp ACCGGGTATGCGCTGACTTCTGAGGGTGGGGCTGGTTCATCGATTTaGATCCGCTGGCGCCTAAATGCAATGTTTCTTTTCCTGCCACCA +
Preference number: 5 (lower is better)
Translates to: TGYALTSEGGAGSSI*IRWRLNAMFLFLPP
Trigger: TGGTGGCAGGAAAAGAAACATTGCATTTAGGCGCCAGCGGATGCAAATCGATGAACCAGCCCCACCCTCAGAAGTCAGCGCATACCCGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 90 bp AATTCTGCTACCGCCCGCTCCAGCTCTAGGCTTTTGGAATTCAGCTaGTGGGTCATGACGTCTTTGCCTGAGTCGAGCTTGATGCACAGT +
Preference number: 5 (lower is better)
Translates to: NSATARSSSRLLEFS*WVMTSLPESSLMHS
Trigger: ACTGTGCATCAAGCTCGACTCAGGCAAAGACGTCATGACCCAGCAGCTGAATTCCAAAAGCCTAGAGCTGGAGCGGGCGGTAGCAGAATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp CGCTGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGGTTCGTACTTCTCGTTaGACATCTGCCTCTTCAGAT +
Preference number: 5 (lower is better)
Translates to: RCQPLGFPEGVLTLWKQKVRTSR*TSASSD
Trigger: ATCTGAAGAGGCAGATGTCAAACGAGAAGTACGAAC...CTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACAGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 90 bp GCCTTTCCCGAGGACAACCTGCACTGCCGCAGGCTTTCTGTCGTATaGACGAGGTCACTGAAAAGTTTTTCTACCAAAGGCAGACTGTCC +
Preference number: 5 (lower is better)
Translates to: AFPEDNLHCRRLSVV*TRSLKSFSTKGRLS
Trigger: GGACAGTCTGCCTTTGGTAGAAAAACTTTTCAGTGACCTCGTTCATACGACAGAAAGCCTGCGGCAGTGCAGGTTGTCCTCGGGAAAGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 90 bp CTCCAGAGACAGGACATCAGGGGAACAACCGCCATCCAACGCAAGTaGCAGTCGCTGTATTTCTCGTTCTCTCAGTTCAATCTGCTTGCT +
Preference number: 5 (lower is better)
Translates to: LQRQDIRGTTAIQRK*QSLYFSFSQFNLLA
Trigger: AGCAAGCAGATTGAACTGAGAGAACGAGAAATACAGCGACTGTCACTTGCGTTGGATGGCGGTTGTTCCCCTGATGTCCTGTCTCTGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 90 bp ACAACCTGCACTGCCGCAGGCTTTCTGTCGTATGAACGAGGTCACTaGAAAGTTTTTCTACCAAAGGCAGACTGTCCACTGACAGGGTCT +
Preference number: 5 (lower is better)
Translates to: TTCTAAGFLSYERGH*KVFLPKADCPLTGS
Trigger: AGACCCTGTCAGTGGACAGTCTGCCTTTGGTAGAAAAACTTTTCAGTGACCTCGTTCATACGACAGAAAGCCTGCGGCAGTGCAGGTTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 90 bp TCTCGAATCTCTCCAGCATGCGCTGAAGTTCATCCCTTTCTCTTGTaGTCAGGTGAACGTCCGTGCTGCAGTCACCCTTTTCTGAGCATT +
Preference number: 5 (lower is better)
Translates to: SRISPACAEVHPFLL*SGERPCCSHPFLSI
Trigger: AATGCTCAGAAAAGGGTGACTGCAGCACGGACGTTCACCTGATCACAAGAGAAAGGGATGAACTTCAGCGCATGCTGGAGAGATTCGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 90 bp CTTTTTCCTTGGCGGCCATCAGGCTCTCCCACCGCGACACCTCAGTaGTGTACTTATGGACTCTGCTCTTCATCTCTTCTTTTTCTTGCA +
Preference number: 5 (lower is better)
Translates to: LFPWRPSGSPTATPQ*CTYGLCSSSLLFLA
Trigger: TGCAAGAAAAAGAAGAGATGAAGAGCAGAGTCCATAAGTACATCACTGAGGTGTCGCGGTGGGAGAGCCTGATGGCCGCCAAGGAAAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 90 bp CTCAAGGTTCCGCATTTCACAGAGGTTTCGTTTAATCTCTTTCTTTaGCTCCCCGAGCTCCTTGTCTGCTGTCTCCAGCACTTGCTCCTT +
Preference number: 5 (lower is better)
Translates to: LKVPHFTEVSFNLFL*LPELLVCCLQHLLL
Trigger: AAGGAGCAAGTGCTGGAGACAGCAGACAAGGAGCTCGGGGAGGCAAAGAAAGAGATTAAACGAAACCTCTGTGAAATGCGGAACCTTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 90 bp AGAGATCTCTCTAGATTTCCCAACATCATCAAGCTCCTTGTGAGATaGATCAAGCTGGCGCCGGAGGCTGTTTATCTCTCGGTCTCGAGT +
Preference number: 5 (lower is better)
Translates to: RDLSRFPNIIKLLVR*IKLAPEAVYLSVSS
Trigger: ACTCGAGACCGAGAGATAAACAGCCTCCGGCGCCAGCTTGATGCATCTCACAAGGAGCTTGATGATGTTGGGAAATCTAGAGAGATCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp ATAGATAAAAGTGTCTCCCACTGCCGCCCTTCCTGCTTGCACTATCACACACGGCAGCTCTTTATTAGCTaGCTGGAGGAAGTCAACCTG +
Preference number: 5 (lower is better)
Translates to: IDKSVSHCRPSCLHYHTRQLFIS*LEEVNL
Trigger: CAGGTTGACTTCCTCCAGCAAGCTAATAAAGAGCTG...CCGTGTGTGATAGTGCAAGCAGGAAGGGCGGCAGTGGGAGACACTTTTATCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp CGCTGTCAGCCGCTCGGCTTCCCTGAGGGAGTCCTAACTCTCTGGAAACAGAAGAAACTCTGCAGCTTTTaGCTAAGTCTTTGCTTTTCT +
Preference number: 5 (lower is better)
Translates to: RCQPLGFPEGVLTLWKQKKLCSF*LSLCFS
Trigger: AGAAAAGCAAAGACTTAGCAAAAAGCTGCAGAGTTT...CTTCTGTTTCCAGAGAGTTAGGACTCCCTCAGGGAAGCCGAGCGGCTGACAGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp ATAGATAAAAGTGTCTCCCACTGCCGCCCTTCCTGCTTGCACTATCACACACGGGATTTTCTCTCGCCATaGTGGCCAGGTCATCTTGTA +
Preference number: 5 (lower is better)
Translates to: IDKSVSHCRPSCLHYHTRDFLSP*WPGHLV
Trigger: TACAAGATGACCTGGCCACAATGGCGAGAGAAAATC...CCGTGTGTGATAGTGCAAGCAGGAAGGGCGGCAGTGGGAGACACTTTTATCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 90 bp GCAGTTTCTCCAGCTCTTTCTTGTAATAATCGCGCTCTTCCTCTATaGCTTTCAGAAATGTGTCCAGACGAGAGGGTGACTTGTCCCGAC +
Preference number: 5 (lower is better)
Translates to: AVSPALSCNNRALPL*LSEMCPDERVTCPD
Trigger: GTCGGGACAAGTCACCCTCTCGTCTGGACACATTTCTGAAAGGCATAGAGGAAGAGCGCGATTATTACAAGAAAGAGCTGGAGAAACTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp ATAGATAAAAGTGTCTCCCACTGCCGCCCTTCCTGCTTGCACTATCACACACGGTGGATCTTTTCATCCTaGGCTTTGCTCTCTTTCTCC +
Preference number: 5 (lower is better)
Translates to: IDKSVSHCRPSCLHYHTRWIFSS*ALLSFS
Trigger: GGAGAAAGAGAGCAAAGCCAAGGATGAAAAGATCCA...CCGTGTGTGATAGTGCAAGCAGGAAGGGCGGCAGTGGGAGACACTTTTATCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp AGAAATGTATCCCACAGACAGACCCAGAGACTTGAACACTTGGCCCCAGGTGTGAGCTTCTCGTTTCTGTaGCTGAGGTTCACAACTTCA +
Preference number: 5 (lower is better)
Translates to: RNVSHRQTQRLEHLAPGVSFSFL*LRFTTS
Trigger: TGAAGTTGTGAACCTCAGCAACAGAAACGAGAAGCT...CACACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTCTGTGGGATACATTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp AGAAATGTATCCCACAGACAGACCCAGAGACTTGAACACTTGGCCCCAGGTGTGCCCTTTTCTGAGCATTaGACTACAGGAGGTTTTTCC +
Preference number: 5 (lower is better)
Translates to: RNVSHRQTQRLEHLAPGVPFSEH*TTGGFS
Trigger: GGAAAAACCTCCTGTAGTCAAATGCTCAGAAAAGGG...CACACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTCTGTGGGATACATTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 90 bp TCTTGGGCTGATTCAAGTTCACCTCTTTTTATGGAAAGTCGGTGCTaGCAGTCATCAAGTGAGCGCTGTAGCTGCTCACTGACGATCCTA +
Preference number: 5 (lower is better)
Translates to: SWADSSSPLFMESRC*QSSSERCSCSLTIL
Trigger: TAGGATCGTCAGTGAGCAGCTACAGCGCTCACTTGATGACTGTCAGCACCGACTTTCCATAAAAAGAGGTGAACTTGAATCAGCCCAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 90 bp CAAGTGACAGTCGCTGTATTTCTCGTTCTCTCAGTTCAATCTGCTTaGTGTAGTCCAGCACTCCTTTCTCCATCTGTGCTAGCTTCTCCT +
Preference number: 5 (lower is better)
Translates to: QVTVAVFLVLSVQSA*CSPALLSPSVLASP
Trigger: AGGAGAAGCTAGCACAGATGGAGAAAGGAGTGCTGGACTACAGCAAGCAGATTGAACTGAGAGAACGAGAAATACAGCGACTGTCACTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp AGAAATGTATCCCACAGACAGACCCAGAGACTTGAACACTTGGCCCCAGGTGTGAGAAAGTCCTTTTCTTaGTCCATCACTCCAATGGTC +
Preference number: 5 (lower is better)
Translates to: RNVSHRQTQRLEHLAPGVRKSFS*SITPMV
Trigger: GACCATTGGAGTGATGGACAAAGAAAAGGACTTTCT...CACACCTGGGGCCAAGTGTTCAAGTCTCTGGGTCTGTCTGTGGGATACATTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 90 bp TTAAAAGAGATCTCTCTAGATTTCCCAACATCATCAAGCTCCTTGTaGGATGCATCAAGCTGGCGCCGGAGGCTGTTTATCTCTCGGTCT +
Preference number: 5 (lower is better)
Translates to: LKEISLDFPTSSSSL*DASSWRRRLFISRS
Trigger: AGACCGAGAGATAAACAGCCTCCGGCGCCAGCTTGATGCATCTCACAAGGAGCTTGATGATGTTGGGAAATCTAGAGAGATCTCTTTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGGGCTGGTTCATCGATTaGCATCCGCTGGCGCCTAAA +
Preference number: 5 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRGWFID*HPLAPK
Trigger: TTTAGGCGCCAGCGGATGCAAATCGATGAACCAGCC...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGTGCTGTCTCCAGCACTaGCTCCTTGTGCCTTTCCAG +
Preference number: 5 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRCCLQH*LLVPFQ
Trigger: CTGGAAAGGCACAAGGAGCAAGTGCTGGAGACAGCA...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp TCAACCATAATGAAATCTAGTTATAAAAGAGGGGTTTCTTCAAACGCGAACAGTGCCTCCCCGAGCTCCTaGTCTGCTGTCTCCAGCACT +
Preference number: 5 (lower is better)
Translates to: STIMKSSYKRGVSSNANSASPSS*SAVSST
Trigger: AGTGCTGGAGACAGCAGACAAGGAGCTCGGGGAGGC...ACTGTTCGCGTTTGAAGAAACCCCTCTTTTATAACTAGATTTCATTATGGTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp ATAGATAAAAGTGTCTCCCACTGCCGCCCTTCCTGCTTGCACTATCACACACGGCTTTTTGCTAAGTCTTaGCTTTTCTTGTTCGAGCTG +
Preference number: 5 (lower is better)
Translates to: IDKSVSHCRPSCLHYHTRLFAKS*LFLFEL
Trigger: CAGCTCGAACAAGAAAAGCAAAGACTTAGCAAAAAG...CCGTGTGTGATAGTGCAAGCAGGAAGGGCGGCAGTGGGAGACACTTTTATCTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGGGCGCATCTCTTGGATaGCTCGCTCTCGTTCGTACT +
Preference number: 5 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRGASLG*LALVRT
Trigger: AGTACGAACGAGAGCGAGCAATCCAAGAGATGCGCC...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 90 bp TCTTCGCTCTGCACCGTCATCCTGTGGCTGAGATTCTCTAGTTTTTaGTCCAGCATTTTAATTTGCTCTTGGGCTGATTCAAGTTCACCT +
Preference number: 5 (lower is better)
Translates to: SSLCTVILWLRFSSF*SSILICSWADSSSP
Trigger: AGGTGAACTTGAATCAGCCCAAGAGCAAATTAAAATGCTGGAGCAAAAACTAGAGAATCTCAGCCACAGGATGACGGTGCAGAGCGAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CCA 90 bp TGCAACTGTGTCACTTTAGTTCGAAGCATGGAGGTTTCTCGGCTTTaGGTAGTCAGTTTGCTTTCTGAGAGATTTAGCTTCTCCTTCAGC +
Preference number: 5 (lower is better)
Translates to: CNCVTLVRSMEVSRL*VVSLLSERFSFSFS
Trigger: GCTGAAGGAGAAGCTAAATCTCTCAGAAAGCAAACTGACTACCCAAAGCCGAGAAACCTCCATGCTTCGAACTAAAGTGACACAGTTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp AAAGGTGTTTTCAATTTATACGGCACAGGGATGGTGTTGACATACTATTCGGAAGGCTGGTTCATCGATTaGCATCCGCTGGCGCCTAAA +
Preference number: 5 (lower is better)
Translates to: KGVFNLYGTGMVLTYYSEGWFID*HPLAPK
Trigger: TTTAGGCGCCAGCGGATGCAAATCGATGAACCAGCC...TTCCGAATAGTATGTCAACACCATCCCTGTGCCGTATAAATTGAAAACACCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp AAAGGTGTTTTCAATTTATACGGCACAGGGATGGTGTTGACATACTATTCGGAACCTGTTGTCAGCCACTaGCAGGAGGTCCGCAATGTA +
Preference number: 5 (lower is better)
Translates to: KGVFNLYGTGMVLTYYSEPVVSH*QEVRNV
Trigger: TACATTGCGGACCTCCTGCAAGTGGCTGACAACAGG...TTCCGAATAGTATGTCAACACCATCCCTGTGCCGTATAAATTGAAAACACCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp AAAGGTGTTTTCAATTTATACGGCACAGGGATGGTGTTGACATACTATTCGGAAGGCGCATCTCTTGGATaGCTCGCTCTCGTTCGTACT +
Preference number: 5 (lower is better)
Translates to: KGVFNLYGTGMVLTYYSEGASLG*LALVRT
Trigger: AGTACGAACGAGAGCGAGCAATCCAAGAGATGCGCC...TTCCGAATAGTATGTCAACACCATCCCTGTGCCGTATAAATTGAAAACACCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 90 bp TTTTCATCCTTGGCTTTGCTCTCTTTCTCCAGGACTTTGACCTTGTaGACATACTGGTTGTTCAGAAACTTCAGATCAGCTGTCTCACGG +
Preference number: 5 (lower is better)
Translates to: FSSLALLSFSRTLTL*TYWLFRNFRSAVSR
Trigger: CCGTGAGACAGCTGATCTGAAGTTTCTGAACAACCAGTATGTTCACAAGGTCAAAGTCCTGGAGAAAGAGAGCAAAGCCAAGGATGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CCA 90 bp TCAGATAACGCGCGTTCTTTCTCCTTTTCTACACAACTAACAAGATaGTTGGGGGATGTCGAATTAGTGGACTCCTTCCTTAGTGTAGAC +
Preference number: 5 (lower is better)
Translates to: SDNARSFSFSTQLTR*LGDVELVDSFLSVD
Trigger: GTCTACACTAAGGAAGGAGTCCACTAATTCGACATCCCCCAACCATCTTGTTAGTTGTGTAGAAAAGGAGAAAGAACGCGCGTTATCTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CCA 90 bp AGCAGCTGGATTTCTGTGTCCTTCTCGTGGGAGGTTAAATGGGACTaGAACTCTTTATCTCTGTTTGTAGCTAACAACGACTCAAGGTTT +
Preference number: 5 (lower is better)
Translates to: SSWISVSFSWEVKWD*NSLSLFVANNDSRF
Trigger: AAACCTTGAGTCGTTGTTAGCTACAAACAGAGATAAAGAGTTCCAGTCCCATTTAACCTCCCACGAGAAGGACACAGAAATCCAGCTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGGGTTCACAACTTCAGTaGTCACTGTTTCCTTGGTTT +
Preference number: 5 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGGSQLQ*SLFPWF
Trigger: AAACCAAGGAAACAGTGACAACTGAAGTTGTGAACC...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp GCACGAAACCTAAATAGTGCAAGAATCCTTCCATGCATATATTATGGTTCACTATGCTGTCTCCAGCACTaGCTCCTTGTGCCTTTCCAG +
Preference number: 5 (lower is better)
Translates to: ARNLNSARILPCIYYGSLCCLQH*LLVPFQ
Trigger: CTGGAAAGGCACAAGGAGCAAGTGCTGGAGACAGCA...TAGTGAACCATAATATATGCATGGAAGGATTCTTGCACTATTTAGGTTTCGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp AGTGGGAGAGTAAGTCGCCCTGTACTCAACTATGCAGCAAATTATTGCAAAGGGAGAAAGTCCTTTTCTTaGTCCATCACTCCAATGGTC +
Preference number: 5 (lower is better)
Translates to: SGRVSRPVLNYAANYCKGRKSFS*SITPMV
Trigger: GACCATTGGAGTGATGGACAAAGAAAAGGACTTTCT...CCCTTTGCAATAATTTGCTGCATAGTTGAGTACAGGGCGACTTACTCTCCCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp AAAGGTGTTTTCAATTTATACGGCACAGGGATGGTGTTGACATACTATTCGGAACAGCTCTTTATTAGCTaGCTGGAGGAAGTCAACCTG +
Preference number: 5 (lower is better)
Translates to: KGVFNLYGTGMVLTYYSEQLFIS*LEEVNL
Trigger: CAGGTTGACTTCCTCCAGCAAGCTAATAAAGAGCTG...TTCCGAATAGTATGTCAACACCATCCCTGTGCCGTATAAATTGAAAACACCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp ACACACGGCGATAACTATTTTATCCAGATGAGATCACTAGGCACATTTATTTCCGATTTTCTCTCGCCATaGTGGCCAGGTCATCTTGTA +
Preference number: 5 (lower is better)
Translates to: THGDNYFIQMRSLGTFISDFLSP*WPGHLV
Trigger: TACAAGATGACCTGGCCACAATGGCGAGAGAAAATC...GGAAATAAATGTGCCTAGTGATCTCATCTGGATAAAATAGTTATCGCCGTGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 90 bp GTCTCACGGGAACATTTCTTCAGTGTCGTCTTCAAGTCTTTAATGTaGTTGTCTGAGCATTCTCTGAGCTTCATTAACTCCAGATACAAT +
Preference number: 5 (lower is better)
Translates to: VSREHFFSVVFKSLM*LSEHSLSFINSRYN
Trigger: ATTGTATCTGGAGTTAATGAAGCTCAGAGAATGCTCAGACAAGCACATTAAAGACTTGAAGACGACACTGAAGAAATGTTCCCGTGAGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp ACACACGGCGATAACTATTTTATCCAGATGAGATCACTAGGCACATTTATTTCCTGGATCTTTTCATCCTaGGCTTTGCTCTCTTTCTCC +
Preference number: 5 (lower is better)
Translates to: THGDNYFIQMRSLGTFISWIFSS*ALLSFS
Trigger: GGAGAAAGAGAGCAAAGCCAAGGATGAAAAGATCCA...GGAAATAAATGTGCCTAGTGATCTCATCTGGATAAAATAGTTATCGCCGTGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp ACACACGGCGATAACTATTTTATCCAGATGAGATCACTAGGCACATTTATTTCCCCCTTTTCTGAGCATTaGACTACAGGAGGTTTTTCC +
Preference number: 5 (lower is better)
Translates to: THGDNYFIQMRSLGTFISPFSEH*TTGGFS
Trigger: GGAAAAACCTCCTGTAGTCAAATGCTCAGAAAAGGG...GGAAATAAATGTGCCTAGTGATCTCATCTGGATAAAATAGTTATCGCCGTGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp AGTTCTATTAGACTAGATTTAGATAGACTCCCCTGTGTGATAGACAGCACACGTCTATCCAGCAAGTCTTaGTTTTCTTTTTCCTTGGCG +
Preference number: 5 (lower is better)
Translates to: SSIRLDLDRLPCVIDSTRLSSKS*FSFSLA
Trigger: CGCCAAGGAAAAAGAAAACAAAGACTTGCTGGATAG...ACGTGTGCTGTCTATCACACAGGGGAGTCTATCTAAATCTAGTCTAATAGAACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp AGTTCTATTAGACTAGATTTAGATAGACTCCCCTGTGTGATAGACAGCACACGTCTTTGGGTAGTCAGTTaGCTTTCTGAGAGATTTAGC +
Preference number: 5 (lower is better)
Translates to: SSIRLDLDRLPCVIDSTRLWVVS*LSERFS
Trigger: GCTAAATCTCTCAGAAAGCAAACTGACTACCCAAAG...ACGTGTGCTGTCTATCACACAGGGGAGTCTATCTAAATCTAGTCTAATAGAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp TTTAGAAAATGTAGTCTGAATGAGAAATGTATCCCACAGACAGACCCAGAGACTGTTCGTACTTCTCGTTaGACATCTGCCTCTTCAGAT +
Preference number: 5 (lower is better)
Translates to: FRKCSLNEKCIPQTDPETVRTSR*TSASSD
Trigger: ATCTGAAGAGGCAGATGTCAAACGAGAAGTACGAAC...AGTCTCTGGGTCTGTCTGTGGGATACATTTCTCATTCAGACTACATTTTCTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp TGTACTCAACTATGCAGCAAATTATTGCAAAGGGAACATCCTGACCACATAAGGGCAATGAGTTTCTCATaGGTTTTATTTCTGGTCTCC +
Preference number: 5 (lower is better)
Translates to: CTQLCSKLLQREHPDHIRAMSFS*VLFLVS
Trigger: GGAGACCAGAAATAAAACCAATGAGAAACTCATTGC...CCTTATGTGGTCAGGATGTTCCCTTTGCAATAATTTGCTGCATAGTTGAGTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp TTTAGAAAATGTAGTCTGAATGAGAAATGTATCCCACAGACAGACCCAGAGACTCTATCCAGCAAGTCTTaGTTTTCTTTTTCCTTGGCG +
Preference number: 5 (lower is better)
Translates to: FRKCSLNEKCIPQTDPETLSSKS*FSFSLA
Trigger: CGCCAAGGAAAAAGAAAACAAAGACTTGCTGGATAG...AGTCTCTGGGTCTGTCTGTGGGATACATTTCTCATTCAGACTACATTTTCTAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp TTTAGAAAATGTAGTCTGAATGAGAAATGTATCCCACAGACAGACCCAGAGACTCTTTGGGTAGTCAGTTaGCTTTCTGAGAGATTTAGC +
Preference number: 5 (lower is better)
Translates to: FRKCSLNEKCIPQTDPETLWVVS*LSERFS
Trigger: GCTAAATCTCTCAGAAAGCAAACTGACTACCCAAAG...AGTCTCTGGGTCTGTCTGTGGGATACATTTCTCATTCAGACTACATTTTCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp GCACGAAACCTAAATAGTGCAAGAATCCTTCCATGCATATATTATGGTTCACTAGGTTCACAACTTCAGTaGTCACTGTTTCCTTGGTTT +
Preference number: 5 (lower is better)
Translates to: ARNLNSARILPCIYYGSLGSQLQ*SLFPWF
Trigger: AAACCAAGGAAACAGTGACAACTGAAGTTGTGAACC...TAGTGAACCATAATATATGCATGGAAGGATTCTTGCACTATTTAGGTTTCGTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp TCAACCATAATGAAATCTAGTTATAAAAGAGGGGTTTCTTCAAACGCGAACAGTAGCTTCTCGTTTCTGTaGCTGAGGTTCACAACTTCA +
Preference number: 5 (lower is better)
Translates to: STIMKSSYKRGVSSNANSSFSFL*LRFTTS
Trigger: TGAAGTTGTGAACCTCAGCAACAGAAACGAGAAGCT...ACTGTTCGCGTTTGAAGAAACCCCTCTTTTATAACTAGATTTCATTATGGTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp TTTAGAAAATGTAGTCTGAATGAGAAATGTATCCCACAGACAGACCCAGAGACTAAGTCTTTGCTTTTCTaGTTCGAGCTGATGAACAAC +
Preference number: 5 (lower is better)
Translates to: FRKCSLNEKCIPQTDPETKSLLF*FELMNN
Trigger: GTTGTTCATCAGCTCGAACAAGAAAAGCAAAGACTT...AGTCTCTGGGTCTGTCTGTGGGATACATTTCTCATTCAGACTACATTTTCTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp ACACACGGCGATAACTATTTTATCCAGATGAGATCACTAGGCACATTTATTTCCAAGTCTTTGCTTTTCTaGTTCGAGCTGATGAACAAC +
Preference number: 5 (lower is better)
Translates to: THGDNYFIQMRSLGTFISKSLLF*FELMNN
Trigger: GTTGTTCATCAGCTCGAACAAGAAAAGCAAAGACTT...GGAAATAAATGTGCCTAGTGATCTCATCTGGATAAAATAGTTATCGCCGTGTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp ACACACGGCGATAACTATTTTATCCAGATGAGATCACTAGGCACATTTATTTCCCTTTTTGCTAAGTCTTaGCTTTTCTTGTTCGAGCTG +
Preference number: 5 (lower is better)
Translates to: THGDNYFIQMRSLGTFISLFAKS*LFLFEL
Trigger: CAGCTCGAACAAGAAAAGCAAAGACTTAGCAAAAAG...GGAAATAAATGTGCCTAGTGATCTCATCTGGATAAAATAGTTATCGCCGTGTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp GCACGAAACCTAAATAGTGCAAGAATCCTTCCATGCATATATTATGGTTCACTAGCAATGAGTTTCTCATaGGTTTTATTTCTGGTCTCC +
Preference number: 5 (lower is better)
Translates to: ARNLNSARILPCIYYGSLAMSFS*VLFLVS
Trigger: GGAGACCAGAAATAAAACCAATGAGAAACTCATTGC...TAGTGAACCATAATATATGCATGGAAGGATTCTTGCACTATTTAGGTTTCGTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS-3UTR CAA 90 bp ACACACGGCGATAACTATTTTATCCAGATGAGATCACTAGGCACATTTATTTCCAAACTCTGCAGCTTTTaGCTAAGTCTTTGCTTTTCT +
Preference number: 5 (lower is better)
Translates to: THGDNYFIQMRSLGTFISKLCSF*LSLCFS
Trigger: AGAAAAGCAAAGACTTAGCAAAAAGCTGCAGAGTTT...GGAAATAAATGTGCCTAGTGATCTCATCTGGATAAAATAGTTATCGCCGTGTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 72 bp GGACTGAGCTGTTCTCCCCTTCCGCTTGCTGAGCCTTaGCCTCCCAGTCCTCAGCACGGCTGTGGAGCATCT +
Preference number: 6 (lower is better)
Translates to: GLSCSPLPLAEP*PPSPQHGCGAS
Trigger: AGATGCTCCACAGCCGTGCTGAGGACTGGGAGGTCAAGGCTCAGCAAGCGGAAGGGGAGAACAGCTCAGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CCA 72 bp GTCTCCAGCACTTGCTCCTTGTGCCTTTCCAGCCGCTaGGCTAACTGGTCGATCTCGGTTAGCTCCTGGCAG +
Preference number: 6 (lower is better)
Translates to: VSSTCSLCLSSR*ANWSISVSSWQ
Trigger: CTGCCAGGAGCTAACCGAGATCGACCAGTTAGCCCAGCGGCTGGAAAGGCACAAGGAGCAAGTGCTGGAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CAA 72 bp CCGAGCTCCTTGTCTGCTGTCTCCAGCACTTGCTCCTaGTGCCTTTCCAGCCGCTGGGCTAACTGGTCGATC +
Preference number: 6 (lower is better)
Translates to: PSSLSAVSSTCS*CLSSRWANWSI
Trigger: GATCGACCAGTTAGCCCAGCGGCTGGAAAGGCACAAGGAGCAAGTGCTGGAGACAGCAGACAAGGAGCTCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CAA 90 bp CTGCTGGACCTCCTCCTGCAGCTCCTGAATCCTGTTGTCAGCCACTaGCAGGAGGTCCGCAATGTATGGGTCTTCTGGTTGAGGAACCGG +
Preference number: 6 (lower is better)
Translates to: LLDLLLQLLNPVVSH*QEVRNVWVFWLRNR
Trigger: CCGGTTCCTCAACCAGAAGACCCATACATTGCGGACCTCCTGCAAGTGGCTGACAACAGGATTCAGGAGCTGCAGGAGGAGGTCCAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 72 bp AGCTCCTTGTCTGCTGTCTCCAGCACTTGCTCCTTGTaGCTTTCCAGCCGCTGGGCTAACTGGTCGATCTCG +
Preference number: 6 (lower is better)
Translates to: SSLSAVSSTCSL*LSSRWANWSIS
Trigger: CGAGATCGACCAGTTAGCCCAGCGGCTGGAAAGGCACAAGGAGCAAGTGCTGGAGACAGCAGACAAGGAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 72 bp GTCTTCTGGTTGAGGAACCGGGTATGCGCTGACTTCTaGGGGTGGGGCTGGTTCATCGATTTGCATCCGCTG +
Preference number: 6 (lower is better)
Translates to: VFWLRNRVCADF*GWGWFIDLHPL
Trigger: CAGCGGATGCAAATCGATGAACCAGCCCCACCCTCAGAAGTCAGCGCATACCCGGTTCCTCAACCAGAAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 72 bp ATCTCCTTCTCCAGGAGGTCCACTCGTTCCCGCAGATaGCTTCTCTCTGTGTCGATAGACAGCAGCTCCAGG +
Preference number: 6 (lower is better)
Translates to: ISFSRRSTRSRR*LLSVSIDSSSR
Trigger: CCTGGAGCTGCTGTCTATCGACACAGAGAGAAGGCATCTGCGGGAACGAGTGGACCTCCTGGAGAAGGAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 72 bp ACCGCCCGCTCCAGCTCTAGGCTTTTGGAATTCAGCTaGTGGGTCATGACGTCTTTGCCTGAGTCGAGCTTG +
Preference number: 6 (lower is better)
Translates to: TARSSSRLLEFS*WVMTSLPESSL
Trigger: CAAGCTCGACTCAGGCAAAGACGTCATGACCCAGCAGCTGAATTCCAAAAGCCTAGAGCTGGAGCGGGCGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CCA 72 bp CCTGTTGTCAGCCACTTGCAGGAGGTCCGCAATGTATaGGTCTTCTGGTTGAGGAACCGGGTATGCGCTGAC +
Preference number: 6 (lower is better)
Translates to: PVVSHLQEVRNV*VFWLRNRVCAD
Trigger: GTCAGCGCATACCCGGTTCCTCAACCAGAAGACCCATACATTGCGGACCTCCTGCAAGTGGCTGACAACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CAA 72 bp AGCTGCTGGGTCATGACGTCTTTGCCTGAGTCGAGCTaGATGCACAGTTCTCGGAGAGACGACACGTCACCT +
Preference number: 6 (lower is better)
Translates to: SCWVMTSLPESS*MHSSRRDDTSP
Trigger: AGGTGACGTGTCGTCTCTCCGAGAACTGTGCATCAAGCTCGACTCAGGCAAAGACGTCATGACCCAGCAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CAA 90 bp TCCTCAGCACGGCTGTGGAGCATCTGGAATCTATCCAGCAAGTCTTaGTTTTCTTTTTCCTTGGCGGCCATCAGGCTCTCCCACCGCGAC +
Preference number: 6 (lower is better)
Translates to: SSARLWSIWNLSSKS*FSFSLAAIRLSHRD
Trigger: GTCGCGGTGGGAGAGCCTGATGGCCGCCAAGGAAAAAGAAAACAAAGACTTGCTGGATAGATTCCAGATGCTCCACAGCCGTGCTGAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 72 bp TGTATGGGTCTTCTGGTTGAGGAACCGGGTATGCGCTaGCTTCTGAGGGTGGGGCTGGTTCATCGATTTGCA +
Preference number: 6 (lower is better)
Translates to: CMGLLVEEPGMR*LLRVGLVHRFA
Trigger: TGCAAATCGATGAACCAGCCCCACCCTCAGAAGTCAGCGCATACCCGGTTCCTCAACCAGAAGACCCATACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 72 bp TGGCGGCCATCAGGCTCTCCCACCGCGACACCTCAGTaGTGTACTTATGGACTCTGCTCTTCATCTCTTCTT +
Preference number: 6 (lower is better)
Translates to: WRPSGSPTATPQ*CTYGLCSSSLL
Trigger: AAGAAGAGATGAAGAGCAGAGTCCATAAGTACATCACTGAGGTGTCGCGGTGGGAGAGCCTGATGGCCGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 72 bp GGCTGGTTCATCGATTTGCATCCGCTGGCGCCTAAATaGAATGTTTCTTTTCCTGCCACCAGGGGTCTGCAC +
Preference number: 6 (lower is better)
Translates to: GWFIDLHPLAPK*NVSFPATRGLH
Trigger: GTGCAGACCCCTGGTGGCAGGAAAAGAAACATTGCATTTAGGCGCCAGCGGATGCAAATCGATGAACCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 72 bp GCGCTGACTTCTGAGGGTGGGGCTGGTTCATCGATTTaGATCCGCTGGCGCCTAAATGCAATGTTTCTTTTC +
Preference number: 6 (lower is better)
Translates to: ALTSEGGAGSSI*IRWRLNAMFLF
Trigger: GAAAAGAAACATTGCATTTAGGCGCCAGCGGATGCAAATCGATGAACCAGCCCCACCCTCAGAAGTCAGCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CCA 72 bp TCTGAGGGTGGGGCTGGTTCATCGATTTGCATCCGCTaGCGCCTAAATGCAATGTTTCTTTTCCTGCCACCA +
Preference number: 6 (lower is better)
Translates to: SEGGAGSSICIR*RLNAMFLFLPP
Trigger: TGGTGGCAGGAAAAGAAACATTGCATTTAGGCGCCAGCGGATGCAAATCGATGAACCAGCCCCACCCTCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CAA 72 bp ACCAGGGGTCTGCACCACAGCACGCAGGTTCTTCTCTaGAAGCTGCTGGATCTTTTCATCCTTGGCTTTGCT +
Preference number: 6 (lower is better)
Translates to: TRGLHHSTQVLL*KLLDLFILGFA
Trigger: AGCAAAGCCAAGGATGAAAAGATCCAGCAGCTTCAAGAGAAGAACCTGCGTGCTGTGGTGCAGACCCCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CAA 90 bp TTGGAATTCAGCTGCTGGGTCATGACGTCTTTGCCTGAGTCGAGCTaGATGCACAGTTCTCGGAGAGACGACACGTCACCTAACATGGTG +
Preference number: 6 (lower is better)
Translates to: LEFSCWVMTSLPESS*MHSSRRDDTSPNMV
Trigger: CACCATGTTAGGTGACGTGTCGTCTCTCCGAGAACTGTGCATCAAGCTCGACTCAGGCAAAGACGTCATGACCCAGCAGCTGAATTCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CAA 90 bp TGGAGCATCTGGAATCTATCCAGCAAGTCTTTGTTTTCTTTTTCCTaGGCGGCCATCAGGCTCTCCCACCGCGACACCTCAGTGATGTAC +
Preference number: 6 (lower is better)
Translates to: WSIWNLSSKSLFSFS*AAIRLSHRDTSVMY
Trigger: GTACATCACTGAGGTGTCGCGGTGGGAGAGCCTGATGGCCGCCAAGGAAAAAGAAAACAAAGACTTGCTGGATAGATTCCAGATGCTCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CAA 90 bp TTTACATTCTCTAATTCTGCTACCGCCCGCTCCAGCTCTAGGCTTTaGGAATTCAGCTGCTGGGTCATGACGTCTTTGCCTGAGTCGAGC +
Preference number: 6 (lower is better)
Translates to: FTFSNSATARSSSRL*EFSCWVMTSLPESS
Trigger: GCTCGACTCAGGCAAAGACGTCATGACCCAGCAGCTGAATTCCAAAAGCCTAGAGCTGGAGCGGGCGGTAGCAGAATTAGAGAATGTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 72 bp TCTCCAGCATGCGCTGAAGTTCATCCCTTTCTCTTGTaGTCAGGTGAACGTCCGTGCTGCAGTCACCCTTTT +
Preference number: 6 (lower is better)
Translates to: SPACAEVHPFLL*SGERPCCSHPF
Trigger: AAAAGGGTGACTGCAGCACGGACGTTCACCTGATCACAAGAGAAAGGGATGAACTTCAGCGCATGCTGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 72 bp TTGACGAGATCTGAGACTCGTATGCGTGATGTGCATTaGTGTGCTCCTGGATCTCCTTCTCCAGGAGGTCCA +
Preference number: 6 (lower is better)
Translates to: LTRSETRMRDVH*CAPGSPSPGGP
Trigger: TGGACCTCCTGGAGAAGGAGATCCAGGAGCACATCAATGCACATCACGCATACGAGTCTCAGATCTCGTCAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CAA 72 bp TGGAATCTATCCAGCAAGTCTTTGTTTTCTTTTTCCTaGGCGGCCATCAGGCTCTCCCACCGCGACACCTCA +
Preference number: 6 (lower is better)
Translates to: WNLSSKSLFSFS*AAIRLSHRDTS
Trigger: TGAGGTGTCGCGGTGGGAGAGCCTGATGGCCGCCAAGGAAAAAGAAAACAAAGACTTGCTGGATAGATTCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CAA 90 bp TCTTCCTCTATGCCTTTCAGAAATGTGTCCAGACGAGAGGGTGACTaGTCCCGACGCTTTATCCCATGTTCTAGCCTCATCCTCTCAACC +
Preference number: 6 (lower is better)
Translates to: SSSMPFRNVSRREGD*SRRFIPCSSLILST
Trigger: GGTTGAGAGGATGAGGCTAGAACATGGGATAAAGCGTCGGGACAAGTCACCCTCTCGTCTGGACACATTTCTGAAAGGCATAGAGGAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 72 bp GAGGACAACCTGCACTGCCGCAGGCTTTCTGTCGTATaGACGAGGTCACTGAAAAGTTTTTCTACCAAAGGC +
Preference number: 6 (lower is better)
Translates to: EDNLHCRRLSVV*TRSLKSFSTKG
Trigger: GCCTTTGGTAGAAAAACTTTTCAGTGACCTCGTTCATACGACAGAAAGCCTGCGGCAGTGCAGGTTGTCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 72 bp CAGGACATCAGGGGAACAACCGCCATCCAACGCAAGTaGCAGTCGCTGTATTTCTCGTTCTCTCAGTTCAAT +
Preference number: 6 (lower is better)
Translates to: QDIRGTTAIQRK*QSLYFSFSQFN
Trigger: ATTGAACTGAGAGAACGAGAAATACAGCGACTGTCACTTGCGTTGGATGGCGGTTGTTCCCCTGATGTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 72 bp CGGTTAGCTCCTGGCAGAGCTTCTCGTTTCTGTTGCTaGGGTTCACAACTTCAGTTGTCACTGTTTCCTTGG +
Preference number: 6 (lower is better)
Translates to: RLAPGRASRFCC*GSQLQLSLFPW
Trigger: CCAAGGAAACAGTGACAACTGAAGTTGTGAACCTCAGCAACAGAAACGAGAAGCTCTGCCAGGAGCTAACCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 72 bp TCTAGATTTCCCAACATCATCAAGCTCCTTGTGAGATaGATCAAGCTGGCGCCGGAGGCTGTTTATCTCTCG +
Preference number: 6 (lower is better)
Translates to: SRFPNIIKLLVR*IKLAPEAVYLS
Trigger: CGAGAGATAAACAGCCTCCGGCGCCAGCTTGATGCATCTCACAAGGAGCTTGATGATGTTGGGAAATCTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CAA 72 bp TTCAGCTTGTCCCTTTCCGCCGTCAGCAGCTTCACGTaGGACTGTATGTCCTCCATGTATTTCTCGAATCTC +
Preference number: 6 (lower is better)
Translates to: FSLSLSAVSSFT*DCMSSMYFSNL
Trigger: GAGATTCGAGAAATACATGGAGGACATACAGTCCAACGTGAAGCTGCTGACGGCGGAAAGGGACAAGCTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CAA 90 bp AGTGTAGACAACTCTTCCTTTGCTTCCTTATACAGGACATTCAGCTaGTCCCTTTCCGCCGTCAGCAGCTTCACGTTGGACTGTATGTCC +
Preference number: 6 (lower is better)
Translates to: SVDNSSFASLYRTFS*SLSAVSSFTLDCMS
Trigger: GGACATACAGTCCAACGTGAAGCTGCTGACGGCGGAAAGGGACAAGCTGAATGTCCTGTATAAGGAAGCAAAGGAAGAGTTGTCTACACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 72 bp ACTGCCGCAGGCTTTCTGTCGTATGAACGAGGTCACTaGAAAGTTTTTCTACCAAAGGCAGACTGTCCACTG +
Preference number: 6 (lower is better)
Translates to: TAAGFLSYERGH*KVFLPKADCPL
Trigger: CAGTGGACAGTCTGCCTTTGGTAGAAAAACTTTTCAGTGACCTCGTTCATACGACAGAAAGCCTGCGGCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 72 bp ATCTCTCTAGATTTCCCAACATCATCAAGCTCCTTGTaGGATGCATCAAGCTGGCGCCGGAGGCTGTTTATC +
Preference number: 6 (lower is better)
Translates to: ISLDFPTSSSSL*DASSWRRRLFI
Trigger: GATAAACAGCCTCCGGCGCCAGCTTGATGCATCTCACAAGGAGCTTGATGATGTTGGGAAATCTAGAGAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CAA 72 bp CGAAGCATGGAGGTTTCTCGGCTTTGGGTAGTCAGTTaGCTTTCTGAGAGATTTAGCTTCTCCTTCAGCAGC +
Preference number: 6 (lower is better)
Translates to: RSMEVSRLWVVS*LSERFSFSFSS
Trigger: GCTGCTGAAGGAGAAGCTAAATCTCTCAGAAAGCAAACTGACTACCCAAAGCCGAGAAACCTCCATGCTTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 72 bp GATTCAAGTTCACCTCTTTTTATGGAAAGTCGGTGCTaGCAGTCATCAAGTGAGCGCTGTAGCTGCTCACTG +
Preference number: 6 (lower is better)
Translates to: DSSSPLFMESRC*QSSSERCSCSL
Trigger: CAGTGAGCAGCTACAGCGCTCACTTGATGACTGTCAGCACCGACTTTCCATAAAAAGAGGTGAACTTGAATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 72 bp GTCGCTGTATTTCTCGTTCTCTCAGTTCAATCTGCTTaGTGTAGTCCAGCACTCCTTTCTCCATCTGTGCTA +
Preference number: 6 (lower is better)
Translates to: VAVFLVLSVQSA*CSPALLSPSVL
Trigger: TAGCACAGATGGAGAAAGGAGTGCTGGACTACAGCAAGCAGATTGAACTGAGAGAACGAGAAATACAGCGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 72 bp GATCCTAAGGGAGGTCATCTCTGTTTTCTGATGAGATaGGTCACCAGTCACATGGCTAAGCTTTTGAGCTTG +
Preference number: 6 (lower is better)
Translates to: DPKGGHLCFLMR*VTSHMAKLLSL
Trigger: CAAGCTCAAAAGCTTAGCCATGTGACTGGTGACTCATCTCATCAGAAAACAGAGATGACCTCCCTTAGGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CCA 72 bp GCGCGTTCTTTCTCCTTTTCTACACAACTAACAAGATaGTTGGGGGATGTCGAATTAGTGGACTCCTTCCTT +
Preference number: 6 (lower is better)
Translates to: ARSFSFSTQLTR*LGDVELVDSFL
Trigger: AAGGAAGGAGTCCACTAATTCGACATCCCCCAACCATCTTGTTAGTTGTGTAGAAAAGGAGAAAGAACGCGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CCA 72 bp TTTGCTCTTGGGCTGATTCAAGTTCACCTCTTTTTATaGAAAGTCGGTGCTGACAGTCATCAAGTGAGCGCT +
Preference number: 6 (lower is better)
Translates to: FALGLIQVHLFL*KVGADSHQVSA
Trigger: AGCGCTCACTTGATGACTGTCAGCACCGACTTTCCATAAAAAGAGGTGAACTTGAATCAGCCCAAGAGCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 72 bp CTCTTGGATTGCTCGCTCTCGTTCGTACTTCTCGTTTaGCATCTGCCTCTTCAGATTATCATAATCTGTCTG +
Preference number: 6 (lower is better)
Translates to: LLDCSLSFVLLV*HLPLQIIIICL
Trigger: CAGACAGATTATGATAATCTGAAGAGGCAGATGTCAAACGAGAAGTACGAACGAGAGCGAGCAATCCAAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 72 bp TGGGCAATGACTTTTTCTTTACTAAGGAGGCTTTCCTaGAGGTTGGCGATCTTTTCTGTCTTCTCATCCACA +
Preference number: 6 (lower is better)
Translates to: WAMTFSLLRRLS*RLAIFSVFSST
Trigger: TGTGGATGAGAAGACAGAAAAGATCGCCAACCTGCAGGAAAGCCTCCTTAGTAAAGAAAAAGTCATTGCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CCA 72 bp AGCTGGATTTCTGTGTCCTTCTCGTGGGAGGTTAAATaGGACTGGAACTCTTTATCTCTGTTTGTAGCTAAC +
Preference number: 6 (lower is better)
Translates to: SWISVSFSWEVK*DWNSLSLFVAN
Trigger: GTTAGCTACAAACAGAGATAAAGAGTTCCAGTCCCATTTAACCTCCCACGAGAAGGACACAGAAATCCAGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CCA 72 bp GTCACTTTAGTTCGAAGCATGGAGGTTTCTCGGCTTTaGGTAGTCAGTTTGCTTTCTGAGAGATTTAGCTTC +
Preference number: 6 (lower is better)
Translates to: VTLVRSMEVSRL*VVSLLSERFSF
Trigger: GAAGCTAAATCTCTCAGAAAGCAAACTGACTACCCAAAGCCGAGAAACCTCCATGCTTCGAACTAAAGTGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CCA 72 bp AAAAGCAGCTCACTGTTCAGTCTCTCCTTCTCCTTATaGCTTAAGTCCAATTCCCACTGCAGTTTTGACATT +
Preference number: 6 (lower is better)
Translates to: KSSSLFSLSFSL*LKSNSHCSFDI
Trigger: AATGTCAAAACTGCAGTGGGAATTGGACTTAAGCCATAAGGAGAAGGAGAGACTGAACAGTGAGCTGCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CCA 72 bp ATTTCTGTGTCCTTCTCGTGGGAGGTTAAATGGGACTaGAACTCTTTATCTCTGTTTGTAGCTAACAACGAC +
Preference number: 6 (lower is better)
Translates to: ISVSFSWEVKWD*NSLSLFVANND
Trigger: GTCGTTGTTAGCTACAAACAGAGATAAAGAGTTCCAGTCCCATTTAACCTCCCACGAGAAGGACACAGAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CAA 72 bp CGTTCTTTCTCCTTTTCTACACAACTAACAAGATGGTaGGGGGATGTCGAATTAGTGGACTCCTTCCTTAGT +
Preference number: 6 (lower is better)
Translates to: RSFSFSTQLTRW*GDVELVDSFLS
Trigger: ACTAAGGAAGGAGTCCACTAATTCGACATCCCCCAACCATCTTGTTAGTTGTGTAGAAAAGGAGAAAGAACG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS TCA 72 bp TTTCATCCTTGGCTTTGCTCTCTTTCTCCAGGACTTTaGCCTTGTGAACATACTGGTTGTTCAGAAACTTCA +
Preference number: 6 (lower is better)
Translates to: FHPWLCSLSPGL*PCEHTGCSETS
Trigger: TGAAGTTTCTGAACAACCAGTATGTTCACAAGGTCAAAGTCCTGGAGAAAGAGAGCAAAGCCAAGGATGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CCA 72 bp AGTGATGTTTCATACTCTGCAACTGTGACCTTCAACTaGGCAATGACTTTTTCTTTACTAAGGAGGCTTTCC +
Preference number: 6 (lower is better)
Translates to: SDVSYSATVTFN*AMTFSLLRRLS
Trigger: GGAAAGCCTCCTTAGTAAAGAAAAAGTCATTGCCCAGTTGAAGGTCACAGTTGCAGAGTATGAAACATCACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CAA 90 bp TCACGGGAACATTTCTTCAGTGTCGTCTTCAAGTCTTTAATGTGCTaGTCTGAGCATTCTCTGAGCTTCATTAACTCCAGATACAATTCA +
Preference number: 6 (lower is better)
Translates to: SREHFFSVVFKSLMC*SEHSLSFINSRYNS
Trigger: TGAATTGTATCTGGAGTTAATGAAGCTCAGAGAATGCTCAGACAAGCACATTAAAGACTTGAAGACGACACTGAAGAAATGTTCCCGTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS GCA 72 bp GAACATTTCTTCAGTGTCGTCTTCAAGTCTTTAATGTaGTTGTCTGAGCATTCTCTGAGCTTCATTAACTCC +
Preference number: 6 (lower is better)
Translates to: EHFFSVVFKSLM*LSEHSLSFINS
Trigger: GGAGTTAATGAAGCTCAGAGAATGCTCAGACAAGCACATTAAAGACTTGAAGACGACACTGAAGAAATGTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8
CDS CAA 72 bp CATTTCTTCAGTGTCGTCTTCAAGTCTTTAATGTGCTaGTCTGAGCATTCTCTGAGCTTCATTAACTCCAGA +
Preference number: 6 (lower is better)
Translates to: HFFSVVFKSLMC*SEHSLSFINSR
Trigger: TCTGGAGTTAATGAAGCTCAGAGAATGCTCAGACAAGCACATTAAAGACTTGAAGACGACACTGAAGAAATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049060.8
ENSMUST00000121979.8