Pregenerated sensors for CENPW (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075266Ensembl transcript IDs: ENSMUST00000099985.6, ENSMUST00000216853.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGTaGCACTCCCTGGTCCAAGGATATACAAACCACCACAAGGTCAGA | + |
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Preference number: 1 (lower is better) Translates to: PTRSHLFQQGHTFRW*HSLVQGYTNHHKVR Trigger: TCTGACCTTGTGGTGGTTTGTATATCCTTGGACCAGGGAGTGGCACCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR GCA 90 bp | CCTGTGTCTCATCCCACATTGTGGAGAAGACCAACTGCCAAAAGTTaGCCTGACCTCTACAGGTATGCCTTGACAAGTGCACACACACAC | + |
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Preference number: 1 (lower is better) Translates to: PVSHPTLWRRPTAKS*PDLYRYALTSAHTH Trigger: GTGTGTGTGTGCACTTGTCAAGGCATACCTGTAGAGGTCAGGGCAACTTTTGGCAGTTGGTCTTCTCCACAATGTGGGATGAGACACAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR CCA 90 bp | CACACCTATTCCAACAAGGCCACACCTTCAGATGGTGCCACTCCCTaGTCCAAGGATATACAAACCACCACAAGGTCAGAGAACAACTGG | + |
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Preference number: 1 (lower is better) Translates to: HTYSNKATPSDGATP*SKDIQTTTRSENNW Trigger: CCAGTTGTTCTCTGACCTTGTGGTGGTTTGTATATCCTTGGACCAGGGAGTGGCACCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR TCA 90 bp | GTCTCATCCCACATTGTGGAGAAGACCAACTGCCAAAAGTTGCCCTaGCCTCTACAGGTATGCCTTGACAAGTGCACACACACACAAACA | + |
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Preference number: 1 (lower is better) Translates to: VSSHIVEKTNCQKLP*PLQVCLDKCTHTQT Trigger: TGTTTGTGTGTGTGTGCACTTGTCAAGGCATACCTGTAGAGGTCAGGGCAACTTTTGGCAGTTGGTCTTCTCCACAATGTGGGATGAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR GCA 90 bp | TTGTCGTGTTTCTCACTGAAGAGTATTCAGAAGTCTCATAAAAATTaGCAGGGCATGTCCAATGCCTTGGCTTCCCCAAGTAAGGCAGGG | + |
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Preference number: 1 (lower is better) Translates to: LSCFSLKSIQKSHKN*QGMSNALASPSKAG Trigger: CCCTGCCTTACTTGGGGAAGCCAAGGCATTGGACATGCCCTGGCAATTTTTATGAGACTTCTGAATACTCTTCAGTGAGAAACACGACAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR GCA 90 bp | GACACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGAAATTCACCTGCCCTCTaGCTCCCAAATGCTGTGATT | + |
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Preference number: 2 (lower is better) Translates to: DTPIPTRSHLFQQGHTFRNSPAL*LPNAVI Trigger: AATCACAGCATTTGGGAGGCAGAGGGCAGGTGAATT...TCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR CCA 90 bp | ACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGTCTCATCCCACATTGTaGAGAAGACCAACTGCCAAA | + |
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Preference number: 2 (lower is better) Translates to: TPIPTRSHLFQQGHTFRWSHPTL*RRPTAK Trigger: TTTGGCAGTTGGTCTTCTCCACAATGTGGGATGAGA...CCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR CCA 90 bp | GACACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGACTTTGTATACCAGGCTaGCCTCGAACTCAGAAATTC | + |
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Preference number: 2 (lower is better) Translates to: DTPIPTRSHLFQQGHTFRLCIPG*PRTQKF Trigger: GAATTTCTGAGTTCGAGGCCAGCCTGGTATACAAAG...TCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR GCA 90 bp | ACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGAAGTCTCATAAAAATTaGCAGGGCATGTCCAATGCC | + |
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Preference number: 2 (lower is better) Translates to: TPIPTRSHLFQQGHTFRWKSHKN*QGMSNA Trigger: GGCATTGGACATGCCCTGGCAATTTTTATGAGACTT...CCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR GCA 90 bp | GACACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGAACACGCACACATGCATaGAGGCAAATAATAATGGTA | + |
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Preference number: 2 (lower is better) Translates to: DTPIPTRSHLFQQGHTFRTRTHA*RQIIMV Trigger: TACCATTATTATTTGCCTGCATGCATGTGTGCGTGT...TCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGTGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR GCA 90 bp | GACACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGAAGACAAAAGCCACTGTaGAATGTGTGCAAATCTACA | + |
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Preference number: 2 (lower is better) Translates to: DTPIPTRSHLFQQGHTFRRQKPL*NVCKST Trigger: TGTAGATTTGCACACATTGCACAGTGGCTTTTGTCT...TCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR CCA 90 bp | AGAACAACTGGGGAATTAGTTCTCTCCTATTGTAACATGGCTTCTGGGTACCAAGCATGTCCAATGCCTTaGCTTCCCCAAGTAAGGCAG | + |
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Preference number: 2 (lower is better) Translates to: RTTGELVLSYCNMASGYQACPMP*LPQVRQ Trigger: CTGCCTTACTTGGGGAAGCCAAGGCATTGGACATGC...TTGGTACCCAGAAGCCATGTTACAATAGGAGAGAACTAATTCCCCAGTTGTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR TCA 90 bp | ACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGAAGCTTCCAAAAGATTaGCATGGGAAAATGCCTTAT | + |
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Preference number: 2 (lower is better) Translates to: TPIPTRSHLFQQGHTFRWKLPKD*HGKMPY Trigger: ATAAGGCATTTTCCCATGTCAATCTTTTGGAAGCTT...CCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR TCA 90 bp | ACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGTCCAATGCTTATTTCTaGCATGCTTCCATTCTCAAA | + |
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Preference number: 2 (lower is better) Translates to: TPIPTRSHLFQQGHTFRWSNAYF*HASILK Trigger: TTTGAGAATGGAAGCATGTCAGAAATAAGCATTGGA...CCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR TCA 90 bp | ACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGAGCAATCCCCAAATTTaGCAAATCAAAATGCTCTTC | + |
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Preference number: 2 (lower is better) Translates to: TPIPTRSHLFQQGHTFRWSNPQI*QIKMLF Trigger: GAAGAGCATTTTGATTTGTCAAATTTGGGGATTGCT...CCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR TCA 90 bp | GACACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGACATAGATTTGCCATTTaGCCTATCAAGCAAACTTCT | + |
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Preference number: 2 (lower is better) Translates to: DTPIPTRSHLFQQGHTFRHRFAI*PIKQTS Trigger: AGAAGTTTGCTTGATAGGTCAAATGGCAAATCTATG...TCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGTGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR TCA 90 bp | ACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGACCAGGGGTGTAAATTaGAAACACTTTCATATACTC | + |
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Preference number: 2 (lower is better) Translates to: TPIPTRSHLFQQGHTFRWTRGVN*KHFHIL Trigger: GAGTATATGAAAGTGTTTTCAATTTACACCCCTGGT...CCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR GCA 90 bp | ACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGAAACACACGCACACATaGATGCAGGCAAATAATAAT | + |
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Preference number: 2 (lower is better) Translates to: TPIPTRSHLFQQGHTFRWKHTHT*MQANNN Trigger: ATTATTATTTGCCTGCATGCATGTGTGCGTGTGTTT...CCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR GCA 90 bp | AGAACAACTGGGGAATTAGTTCTCTCCTATTGTAACATGGCTTCTGGGTACCAAACTCAGAAATTCACCTaGCCTCTGCCTCCCAAATGC | + |
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Preference number: 2 (lower is better) Translates to: RTTGELVLSYCNMASGYQTQKFT*PLPPKC Trigger: GCATTTGGGAGGCAGAGGGCAGGTGAATTTCTGAGT...TTGGTACCCAGAAGCCATGTTACAATAGGAGAGAACTAATTCCCCAGTTGTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR CCA 90 bp | GACACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGAAGAGGACATGGTAGCTaGATGAGTATAAATCAACAA | + |
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Preference number: 2 (lower is better) Translates to: DTPIPTRSHLFQQGHTFRRGHGS*MSINQQ Trigger: TTGTTGATTTATACTCATCCAGCTACCATGTCCTCT...TCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGTGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR TCA 90 bp | AGAACAACTGGGGAATTAGTTCTCTCCTATTGTAACATGGCTTCTGGGTACCAAGCAGAAGGCTGGCATTaGTGTCTCATACCTGTCTTT | + |
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Preference number: 2 (lower is better) Translates to: RTTGELVLSYCNMASGYQAEGWH*CLIPVF Trigger: AAAGACAGGTATGAGACATCAATGCCAGCCTTCTGC...TTGGTACCCAGAAGCCATGTTACAATAGGAGAGAACTAATTCCCCAGTTGTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR GCA 90 bp | ACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGTCAGAATCACTGATCTaGAAGGTAAATGTTCTACAT | + |
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Preference number: 2 (lower is better) Translates to: TPIPTRSHLFQQGHTFRWSESLI*KVNVLH Trigger: ATGTAGAACATTTACCTTGCAGATCAGTGATTCTGA...CCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR CCA 90 bp | ACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGTCCAAAAGATTGACATaGGAAAATGCCTTATCTACT | + |
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Preference number: 2 (lower is better) Translates to: TPIPTRSHLFQQGHTFRWSKRLT*ENALST Trigger: AGTAGATAAGGCATTTTCCCATGTCAATCTTTTGGA...CCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR CCA 90 bp | AGAACAACTGGGGAATTAGTTCTCTCCTATTGTAACATGGCTTCTGGGTACCAAAACAGCCTTCCTTGCTaGCACATCTCACAGTCTATC | + |
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Preference number: 2 (lower is better) Translates to: RTTGELVLSYCNMASGYQNSLPC*HISQSI Trigger: GATAGACTGTGAGATGTGCCAGCAAGGAAGGCTGTT...TTGGTACCCAGAAGCCATGTTACAATAGGAGAGAACTAATTCCCCAGTTGTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR CCA 90 bp | ACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGTCCGAAGTATCAAACTaGTTGATTTCAAAACAGGTT | + |
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Preference number: 2 (lower is better) Translates to: TPIPTRSHLFQQGHTFRWSEVSN*LISKQV Trigger: AACCTGTTTTGAAATCAACCAGTTTGATACTTCGGA...CCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR TCA 90 bp | AGAACAACTGGGGAATTAGTTCTCTCCTATTGTAACATGGCTTCTGGGTACCAACCTGTCTTTATCTGCTaGGTCATTTCAGCTACCATG | + |
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Preference number: 2 (lower is better) Translates to: RTTGELVLSYCNMASGYQPVFIC*VISATM Trigger: CATGGTAGCTGAAATGACTCAGCAGATAAAGACAGG...TTGGTACCCAGAAGCCATGTTACAATAGGAGAGAACTAATTCCCCAGTTGTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR TCA 90 bp | AGAACAACTGGGGAATTAGTTCTCTCCTATTGTAACATGGCTTCTGGGTACCAATGTCGTGTTTCTCACTaGAGAGTATTCAGAAGTCTC | + |
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Preference number: 2 (lower is better) Translates to: RTTGELVLSYCNMASGYQCRVSH*RVFRSL Trigger: GAGACTTCTGAATACTCTTCAGTGAGAAACACGACA...TTGGTACCCAGAAGCCATGTTACAATAGGAGAGAACTAATTCCCCAGTTGTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR CCA 90 bp | AGAACAACTGGGGAATTAGTTCTCTCCTATTGTAACATGGCTTCTGGGTACCAACAACTATACAAAATATaGTGTATCCACACTCAGCAG | + |
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Preference number: 2 (lower is better) Translates to: RTTGELVLSYCNMASGYQQLYKI*CIHTQQ Trigger: CTGCTGAGTGTGGATACACCATATTTTGTATAGTTG...TTGGTACCCAGAAGCCATGTTACAATAGGAGAGAACTAATTCCCCAGTTGTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR GCA 90 bp | AGAACAACTGGGGAATTAGTTCTCTCCTATTGTAACATGGCTTCTGGGTACCAACATGCTCTTAATCATTaGATTGCTTTCAGAAAAGTC | + |
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Preference number: 2 (lower is better) Translates to: RTTGELVLSYCNMASGYQHALNH*IAFRKV Trigger: GACTTTTCTGAAAGCAATGCAATGATTAAGAGCATG...TTGGTACCCAGAAGCCATGTTACAATAGGAGAGAACTAATTCCCCAGTTGTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR GCA 72 bp | CAGGCTGGCCTCGAACTCAGAAATTCACCTGCCCTCTaGCTCCCAAATGCTGTGATTAAAGGCGTGTGCCAC | + |
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Preference number: 3 (lower is better) Translates to: QAGLELRNSPAL*LPNAVIKGVCH Trigger: GTGGCACACGCCTTTAATCACAGCATTTGGGAGGCAGAGGGCAGGTGAATTTCTGAGTTCGAGGCCAGCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR CAA 90 bp | ACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGGTCCTGGGAATCACTTaGTATACCAGGCTGGCCTCG | + |
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Preference number: 3 (lower is better) Translates to: TPIPTRSHLFQQGHTFRWVLGIT*YTRLAS Trigger: CGAGGCCAGCCTGGTATACAAAGTGATTCCCAGGAC...CCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR TCA 72 bp | ATGGCAGTATCCAGGCAGGCATGGCACAGGAGGAGCTaGGAGTTCTATGTCTTCATCCAAAGGCTGCTAGTG | + |
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Preference number: 3 (lower is better) Translates to: MAVSRQAWHRRS*EFYVFIQRLLV Trigger: CACTAGCAGCCTTTGGATGAAGACATAGAACTCTCAGCTCCTCCTGTGCCATGCCTGCCTGGATACTGCCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR CAA 90 bp | ACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGCTCTACAGGTATGCCTaGACAAGTGCACACACACAC | + |
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Preference number: 3 (lower is better) Translates to: TPIPTRSHLFQQGHTFRWLYRYA*TSAHTH Trigger: GTGTGTGTGTGCACTTGTCAAGGCATACCTGTAGAG...CCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR GCA 72 bp | TCACACCTATTCCAACAAGGCCACACCTTCAGATGGTaGCACTCCCTGGTCCAAGGATATACAAACCACCAC | + |
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Preference number: 3 (lower is better) Translates to: SHLFQQGHTFRW*HSLVQGYTNHH Trigger: GTGGTGGTTTGTATATCCTTGGACCAGGGAGTGGCACCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR CCA 72 bp | AGGTCACACCTATTCCAACAAGGCCACACCTTCAGATaGTGCCACTCCCTGGTCCAAGGATATACAAACCAC | + |
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Preference number: 3 (lower is better) Translates to: RSHLFQQGHTFR*CHSLVQGYTNH Trigger: GTGGTTTGTATATCCTTGGACCAGGGAGTGGCACCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR TCA 72 bp | CACATTGTGGAGAAGACCAACTGCCAAAAGTTGCCCTaGCCTCTACAGGTATGCCTTGACAAGTGCACACAC | + |
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Preference number: 3 (lower is better) Translates to: HIVEKTNCQKLP*PLQVCLDKCTH Trigger: GTGTGTGCACTTGTCAAGGCATACCTGTAGAGGTCAGGGCAACTTTTGGCAGTTGGTCTTCTCCACAATGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR GCA 72 bp | CATCCCACATTGTGGAGAAGACCAACTGCCAAAAGTTaGCCTGACCTCTACAGGTATGCCTTGACAAGTGCA | + |
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Preference number: 3 (lower is better) Translates to: HPTLWRRPTAKS*PDLYRYALTSA Trigger: TGCACTTGTCAAGGCATACCTGTAGAGGTCAGGGCAACTTTTGGCAGTTGGTCTTCTCCACAATGTGGGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR CCA 72 bp | AGTCTCATAAAAATTGCCAGGGCATGTCCAATGCCTTaGCTTCCCCAAGTAAGGCAGGGCCAGCAAAGAGAT | + |
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Preference number: 3 (lower is better) Translates to: SLIKIARACPMP*LPQVRQGQQRD Trigger: ATCTCTTTGCTGGCCCTGCCTTACTTGGGGAAGCCAAGGCATTGGACATGCCCTGGCAATTTTTATGAGACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR CCA 72 bp | TTACAGTTTAAAAAGAAAAATAGACCTCAGGTTCCGTaGGTTGGGTCTGCTAAGGCTGATGACCTGTGTCTC | + |
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Preference number: 3 (lower is better) Translates to: LQFKKKNRPQVP*VGSAKADDLCL Trigger: GAGACACAGGTCATCAGCCTTAGCAGACCCAACCCACGGAACCTGAGGTCTATTTTTCTTTTTAAACTGTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR GCA 72 bp | CATATAATGCTTAAGCACATGCTGACACCTAACCTCTaGTCTTCTTCAGAATTACCTGTAAGGGAGGAAATG | + |
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Preference number: 3 (lower is better) Translates to: HIMLKHMLTPNL*SSSELPVREEM Trigger: CATTTCCTCCCTTACAGGTAATTCTGAAGAAGAGCAGAGGTTAGGTGTCAGCATGTGCTTAAGCATTATATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR CCA 72 bp | CTGTGTATTTTAACAAAGTTCAACAGCCTTCCTTGCTaGCACATCTCACAGTCTATCCTAACTCTTCTAGCA | + |
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Preference number: 3 (lower is better) Translates to: LCILTKFNSLPC*HISQSILTLLA Trigger: TGCTAGAAGAGTTAGGATAGACTGTGAGATGTGCCAGCAAGGAAGGCTGTTGAACTTTGTTAAAATACACAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR-3UTR CAA 90 bp | AGAACAACTGGGGAATTAGTTCTCTCCTATTGTAACATGGCTTCTGGGTACCAAGCTATTAGACTGTGGTaGTTCCTTGTTTTGTTTTGT | + |
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Preference number: 3 (lower is better) Translates to: RTTGELVLSYCNMASGYQAIRLW*FLVLFC Trigger: ACAAAACAAAACAAGGAACAACCACAGTCTAATAGC...TTGGTACCCAGAAGCCATGTTACAATAGGAGAGAACTAATTCCCCAGTTGTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR TCA 72 bp | ATGCAAGTGGAGGTCTGTCTTAGGGTTTTACTGCTGTaGACAGATACCATGACTAAGGCAAGTCTTATAAAA | + |
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Preference number: 3 (lower is better) Translates to: MQVEVCLRVLLL*TDTMTKASLIK Trigger: TTTTATAAGACTTGCCTTAGTCATGGTATCTGTTCACAGCAGTAAAACCCTAAGACAGACCTCCACTTGCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR TCA 72 bp | AATGACTGGGACAGATCACAAGAGTATTACACTGAGTaGAAAACATCTCCAATGCTTATTTCTGACATGCTT | + |
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Preference number: 3 (lower is better) Translates to: NDWDRSQEYYTE*KTSPMLISDML Trigger: AAGCATGTCAGAAATAAGCATTGGAGATGTTTTTCACTCAGTGTAATACTCTTGTGATCTGTCCCAGTCATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000099985.6 ENSMUST00000216853.2 |
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| 3UTR TCA 72 bp | AACTTTGCCAATTATAATCCGAAGTATCAAACTGGTTaGTTTCAAAACAGGTTTTGGGTATCATGTCATGTC | + |
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Preference number: 3 (lower is better) Translates to: NFANYNPKYQTG*FQNRFWVSCHV Trigger: GACATGACATGATACCCAAAACCTGTTTTGAAATCAACCAGTTTGATACTTCGGATTATAATTGGCAAAGTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| CDS-3UTR TCA 90 bp | GACACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGACTCCCCAGACCTAGGTaGGGCTTCTTCTGCTTTAAG | + |
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Preference number: 4 (lower is better) Translates to: DTPIPTRSHLFQQGHTFRLPRPR*GFFCFK Trigger: CTTAAAGCAGAAGAAGCCTCACCTAGGTCTGGGGAG...TCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGTGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR CAA 72 bp | AAGTCTCATAAAAATTGCCAGGGCATGTCCAATGCCTaGGCTTCCCCAAGTAAGGCAGGGCCAGCAAAGAGA | + |
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Preference number: 4 (lower is better) Translates to: KSHKNCQGMSNA*ASPSKAGPAKR Trigger: TCTCTTTGCTGGCCCTGCCTTACTTGGGGAAGCCAAGGCATTGGACATGCCCTGGCAATTTTTATGAGACTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR CAA 72 bp | ACTGCCAAAAGTTGCCCTGACCTCTACAGGTATGCCTaGACAAGTGCACACACACACAAACACACGCACACA | + |
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Preference number: 4 (lower is better) Translates to: TAKSCPDLYRYA*TSAHTHKHTHT Trigger: TGTGTGCGTGTGTTTGTGTGTGTGTGCACTTGTCAAGGCATACCTGTAGAGGTCAGGGCAACTTTTGGCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| CDS-3UTR TCA 90 bp | ACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGCCTGCAGCCAGTACATaGTCCTTTTTGATAACTCTA | + |
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Preference number: 4 (lower is better) Translates to: TPIPTRSHLFQQGHTFRWPAAST*SFLITL Trigger: TAGAGTTATCAAAAAGGATCATGTACTGGCTGCAGG...CCATCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| CDS-3UTR GCA 90 bp | GACACACCCATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGTCCTGGACTCTTCTaGCAATCGCTGAATAAAAAG | + |
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Preference number: 4 (lower is better) Translates to: DTPIPTRSHLFQQGHTFRCPGLF*QSLNKK Trigger: CTTTTTATTCAGCGATTGGCAGAAGAGTCCAGGACA...TCTGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGTGTGTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR CAA 72 bp | GCTTCTGGGTACCAAACTCAAGGCAGAAGGCTGGCATaGATGTCTCATACCTGTCTTTATCTGCTGAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: ASGYQTQGRRLA*MSHTCLYLLSH Trigger: ATGACTCAGCAGATAAAGACAGGTATGAGACATCAATGCCAGCCTTCTGCCTTGAGTTTGGTACCCAGAAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| CDS-3UTR CCA 90 bp | AGAACAACTGGGGAATTAGTTCTCTCCTATTGTAACATGGCTTCTGGGTACCAAAGTAGGCAATTCAAATaGATCAGGAGGTCGCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: RTTGELVLSYCNMASGYQSRQFK*IRRSQH Trigger: GTGCTGCGACCTCCTGATCCATTTGAATTGCCTACT...TTGGTACCCAGAAGCCATGTTACAATAGGAGAGAACTAATTCCCCAGTTGTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| CDS-3UTR TCA 90 bp | AGAACAACTGGGGAATTAGTTCTCTCCTATTGTAACATGGCTTCTGGGTACCAATCTTCTGCCAATCGCTaGATAAAAAGTAGGCAATTC | + |
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Preference number: 4 (lower is better) Translates to: RTTGELVLSYCNMASGYQSSANR*IKSRQF Trigger: GAATTGCCTACTTTTTATTCAGCGATTGGCAGAAGA...TTGGTACCCAGAAGCCATGTTACAATAGGAGAGAACTAATTCCCCAGTTGTTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| CDS-3UTR GCA 90 bp | AGAACAACTGGGGAATTAGTTCTCTCCTATTGTAACATGGCTTCTGGGTACCAAATATTTTACCTTTCCTaGAGCCAGTACATGATCCTT | + |
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Preference number: 4 (lower is better) Translates to: RTTGELVLSYCNMASGYQIFYLS*SQYMIL Trigger: AAGGATCATGTACTGGCTGCAGGAAAGGTAAAATAT...TTGGTACCCAGAAGCCATGTTACAATAGGAGAGAACTAATTCCCCAGTTGTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| 3UTR CAA 72 bp | TATGCTGTGTATTTTAACAAAGTTCAACAGCCTTCCTaGCTGGCACATCTCACAGTCTATCCTAACTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: YAVYFNKVQQPS*LAHLTVYPNSS Trigger: AGAAGAGTTAGGATAGACTGTGAGATGTGCCAGCAAGGAAGGCTGTTGAACTTTGTTAAAATACACAGCATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216853.2 |
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| CDS TCA 90 bp | CAATTCAAATGGATCAGGAGGTCGCAGCACCTCCCCAGACCTAGGTaGGGCTTCTTCTGCTTTAAGGTGCGCTTGAGGAAGGCGCGGGGC | + |
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Preference number: 5 (lower is better) Translates to: QFKWIRRSQHLPRPR*GFFCFKVRLRKARG Trigger: GCCCCGCGCCTTCCTCAAGCGCACCTTAAAGCAGAAGAAGCCTCACCTAGGTCTGGGGAGGTGCTGCGACCTCCTGATCCATTTGAATTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000099985.6 ENSMUST00000216853.2 |
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| CDS TCA 72 bp | GACCTAGGTGAGGCTTCTTCTGCTTTAAGGTGCGCTTaGGGAAGGCGCGGGGCGCCTTGCGCTTTACCCGCC | + |
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Preference number: 6 (lower is better) Translates to: DLGEASSALRCA*GRRGAPCALPA Trigger: GGCGGGTAAAGCGCAAGGCGCCCCGCGCCTTCCTCAAGCGCACCTTAAAGCAGAAGAAGCCTCACCTAGGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000099985.6 ENSMUST00000216853.2 |
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| CDS TCA 72 bp | TGGATCAGGAGGTCGCAGCACCTCCCCAGACCTAGGTaGGGCTTCTTCTGCTTTAAGGTGCGCTTGAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: WIRRSQHLPRPR*GFFCFKVRLRK Trigger: CTTCCTCAAGCGCACCTTAAAGCAGAAGAAGCCTCACCTAGGTCTGGGGAGGTGCTGCGACCTCCTGATCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000099985.6 ENSMUST00000216853.2 |
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