Pregenerated sensors for CENPS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073705Ensembl transcript IDs: ENSMUST00000030813.10, ENSMUST00000105695.2, ENSMUST00000105696.8, ENSMUST00000177408.2
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCTCATCCCTGCAGACTGCCCTCGTGGCGAGCGCTGCTTCCAGATaGGATGAAGGCCTTAGCTCTCGCTCTGCAGCTCCTCAGCCCCGT | + |
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Preference number: 1 (lower is better) Translates to: SSSLQTALVASAASR*DEGLSSRSAAPQPR Trigger: ACGGGGCTGAGGAGCTGCAGAGCGAGAGCTAAGGCCTTCATCTCATCTGGAAGCAGCGCTCGCCACGAGGGCAGTCTGCAGGGATGAGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177408.2 |
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| 3UTR CCA 90 bp | GGCCGTCCTTCCCATGTCTGTCCTCATCCCTGCAGACTGCCCTCGTaGCGAGCGCTGCTTCCAGATGAGATGAAGGCCTTAGCTCTCGCT | + |
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Preference number: 1 (lower is better) Translates to: GRPSHVCPHPCRLPS*RALLPDEMKALALA Trigger: AGCGAGAGCTAAGGCCTTCATCTCATCTGGAAGCAGCGCTCGCCACGAGGGCAGTCTGCAGGGATGAGGACAGACATGGGAAGGACGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177408.2 |
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| 3UTR CCA 90 bp | GTGCAGAGTCCTGGGGATGCAACTCAGACCTCTGTCAGCCAGAGCTaGGTCACTCGGAGACCCGCAAGAAAACTCAGAAATACCGAGGCG | + |
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Preference number: 1 (lower is better) Translates to: VQSPGDATQTSVSQS*VTRRPARKLRNTEA Trigger: CGCCTCGGTATTTCTGAGTTTTCTTGCGGGTCTCCGAGTGACCCAGCTCTGGCTGACAGAGGTCTGAGTTGCATCCCCAGGACTCTGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105695.2 |
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| 3UTR GCA 90 bp | CTAAGCTCACCCCGACAGCCAGCACAGCTGATTGCTAGCCCACTTTaGCAGTCACTAAGTCACGCTGTGCCACCCAAGTGCAAGCCTTTC | + |
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Preference number: 1 (lower is better) Translates to: LSSPRQPAQLIASPL*QSLSHAVPPKCKPF Trigger: GAAAGGCTTGCACTTGGGTGGCACAGCGTGACTTAGTGACTGGCAAAGTGGGCTAGCAATCAGCTGTGCTGGCTGTCGGGGTGAGCTTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| 3UTR CCA 90 bp | GCAAACACAGCTTTATTTATTCCCAGGGACCACCAGTCACCGCGATaGAGGCTGAGACCTGAAGCCACAGCAGCTGGGCTCAGCAAACAC | + |
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Preference number: 1 (lower is better) Translates to: ANTALFIPRDHQSPR*RLRPEATAAGLSKH Trigger: GTGTTTGCTGAGCCCAGCTGCTGTGGCTTCAGGTCTCAGCCTCCATCGCGGTGACTGGTGGTCCCTGGGAATAAATAAAGCTGTGTTTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| 3UTR TCA 90 bp | CAGCTTTATTTATTCCCAGGGACCACCAGTCACCGCGATGGAGGCTaGGACCTGAAGCCACAGCAGCTGGGCTCAGCAAACACAGCTTTA | + |
|
Preference number: 1 (lower is better) Translates to: QLYLFPGTTSHRDGG*DLKPQQLGSANTAL Trigger: TAAAGCTGTGTTTGCTGAGCCCAGCTGCTGTGGCTTCAGGTCTCAGCCTCCATCGCGGTGACTGGTGGTCCCTGGGAATAAATAAAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| 3UTR GCA 90 bp | ACAGTTTTTAATACAGGCAGCCACACAAGTGCAGAGTCCTGGGGATaGAACTCAGACCTCTGTCAGCCAGAGCTGGGTCACTCGGAGACC | + |
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Preference number: 1 (lower is better) Translates to: TVFNTGSHTSAESWG*NSDLCQPELGHSET Trigger: GGTCTCCGAGTGACCCAGCTCTGGCTGACAGAGGTCTGAGTTGCATCCCCAGGACTCTGCACTTGTGTGGCTGCCTGTATTAAAAACTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105695.2 |
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| 3UTR CCA 90 bp | CAGGGAACAGTTTTTAATACAGGCAGCCACACAAGTGCAGAGTCCTaGGGATGCAACTCAGACCTCTGTCAGCCAGAGCTGGGTCACTCG | + |
|
Preference number: 1 (lower is better) Translates to: QGTVFNTGSHTSAES*GCNSDLCQPELGHS Trigger: CGAGTGACCCAGCTCTGGCTGACAGAGGTCTGAGTTGCATCCCCAGGACTCTGCACTTGTGTGGCTGCCTGTATTAAAAACTGTTCCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105695.2 |
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| 3UTR TCA 90 bp | ACAGCAGCTGGGCTCAGCAAACACAGCTTTATTTATTCACCCTGCTaGGACCCGCATTCGACCTGGGAAATAAACAGTGAAGGACTAAGC | + |
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Preference number: 1 (lower is better) Translates to: TAAGLSKHSFIYSPC*DPHSTWEINSEGLS Trigger: GCTTAGTCCTTCACTGTTTATTTCCCAGGTCGAATGCGGGTCTCAGCAGGGTGAATAAATAAAGCTGTGTTTGCTGAGCCCAGCTGCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| 3UTR-3UTR TCA 90 bp | TTCCCATGTCTGTCCTCATCCCTGCAGACTGCCCTCGTGGCGAGCGCTGCTTCCAGCTTCTGCCGAGAATaGCTTCAAACAGGCAGCACG | + |
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Preference number: 2 (lower is better) Translates to: FPCLSSSLQTALVASAASSFCRE*LQTGST Trigger: CGTGCTGCCTGTTTGAAGTCATTCTCGGCAGAAGCT...GGAAGCAGCGCTCGCCACGAGGGCAGTCTGCAGGGATGAGGACAGACATGGGAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030813.10 ENSMUST00000177408.2 |
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| 3UTR-3UTR TCA 90 bp | TGTCCTCATCCCTGCAGACTGCCCTCGTGGCGAGCGCTGCTTCCAGATGAGATGAGCTTCTGCCGAGAATaGCTTCAAACAGGCAGCACG | + |
|
Preference number: 2 (lower is better) Translates to: CPHPCRLPSWRALLPDEMSFCRE*LQTGST Trigger: CGTGCTGCCTGTTTGAAGTCATTCTCGGCAGAAGCT...CATCTCATCTGGAAGCAGCGCTCGCCACGAGGGCAGTCTGCAGGGATGAGGACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030813.10 ENSMUST00000177408.2 |
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| 3UTR-3UTR CCA 90 bp | GCCGGGCTCAGCAAACACAGCTTTATTTATTCCCAGGGACCACCAGTCACCGCGGACCCGCATTCGACCTaGGAAATAAACAGTGAAGGA | + |
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Preference number: 2 (lower is better) Translates to: AGLSKHSFIYSQGPPVTADPHST*EINSEG Trigger: TCCTTCACTGTTTATTTCCCAGGTCGAATGCGGGTC...CGCGGTGACTGGTGGTCCCTGGGAATAAATAAAGCTGTGTTTGCTGAGCCCGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| 3UTR-3UTR CCA 90 bp | CCAGATGAGATGAAGGCCTTAGCTCTCGCTCTGCAGCTCCTCAGCCCCGTCCAGCCTTTCAGGTTAAGCTaGGCAATCTCTTCATTCTTC | + |
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Preference number: 2 (lower is better) Translates to: PDEMKALALALQLLSPVQPFRLS*AISSFF Trigger: GAAGAATGAAGAGATTGCCCAGCTTAACCTGAAAGG...CTGGACGGGGCTGAGGAGCTGCAGAGCGAGAGCTAAGGCCTTCATCTCATCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177408.2 |
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| 3UTR-3UTR TCA 90 bp | TTTAATACAGGCAGCCACACAAGTGCAGAGTCCTGGGGATGCAACTCAGACCTCAATACCGAGGCGGTCTaGACTGACGTGTTCAGAGCA | + |
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Preference number: 2 (lower is better) Translates to: FNTGSHTSAESWGCNSDLNTEAV*TDVFRA Trigger: TGCTCTGAACACGTCAGTTCAGACCGCCTCGGTATT...GAGGTCTGAGTTGCATCCCCAGGACTCTGCACTTGTGTGGCTGCCTGTATTAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105695.2 |
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| 3UTR-3UTR CCA 90 bp | AATACAGGCAGCCACACAAGTGCAGAGTCCTGGGGATGCAACTCAGACCTCTGTATACACCAACAGATGTaGACAATGATGTCAGTGGAC | + |
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Preference number: 2 (lower is better) Translates to: NTGSHTSAESWGCNSDLCIHQQM*TMMSVD Trigger: GTCCACTGACATCATTGTCCACATCTGTTGGTGTAT...ACAGAGGTCTGAGTTGCATCCCCAGGACTCTGCACTTGTGTGGCTGCCTGTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105695.2 |
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| 3UTR CAA 90 bp | GACTCCCGAGAGCTCCTGCTTTCATCTTCCGGCTTTCTTTTCTTCTaGGCCTTTCCTTTCAGGTTAAGCTGGGCAATCTCTTCATTCTTC | + |
|
Preference number: 2 (lower is better) Translates to: DSRELLLSSSGFLFF*AFPFRLSWAISSFF Trigger: GAAGAATGAAGAGATTGCCCAGCTTAACCTGAAAGGAAAGGCCAAGAAGAAAAGAAAGCCGGAAGATGAAAGCAGGAGCTCTCGGGAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177408.2 |
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| 3UTR TCA 72 bp | CAGGGACCACCAGTCACCGCGATGGAGGCTGAGACCTaGAGCCACAGCAGCCGGGCTCAGCAAACACAGCTT | + |
|
Preference number: 3 (lower is better) Translates to: QGPPVTAMEAET*SHSSRAQQTQL Trigger: AAGCTGTGTTTGCTGAGCCCGGCTGCTGTGGCTTCAGGTCTCAGCCTCCATCGCGGTGACTGGTGGTCCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| 3UTR TCA 72 bp | TCATTCCCAGGGACCACCAGTCACCGCGATGGAGGCTaGGACCTGAAGCCACAGCAGCCGGGCTCAGCAAAC | + |
|
Preference number: 3 (lower is better) Translates to: SFPGTTSHRDGG*DLKPQQPGSAN Trigger: GTTTGCTGAGCCCGGCTGCTGTGGCTTCAGGTCTCAGCCTCCATCGCGGTGACTGGTGGTCCCTGGGAATGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| 3UTR TCA 72 bp | CAGGGACCACCAGTCACCGCGATGGAGGCTGAGACCTaGAGCCACAGCAGCTGGGCTCAGCAAACACAGCTT | + |
|
Preference number: 3 (lower is better) Translates to: QGPPVTAMEAET*SHSSWAQQTQL Trigger: AAGCTGTGTTTGCTGAGCCCAGCTGCTGTGGCTTCAGGTCTCAGCCTCCATCGCGGTGACTGGTGGTCCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| 3UTR CCA 72 bp | AGAGATTTCATTCCCAGGGACCACCAGTCACCGCGATaGAGGCTGAGACCTGAAGCCACAGCAGCCGGGCTC | + |
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Preference number: 3 (lower is better) Translates to: RDFIPRDHQSPR*RLRPEATAAGL Trigger: GAGCCCGGCTGCTGTGGCTTCAGGTCTCAGCCTCCATCGCGGTGACTGGTGGTCCCTGGGAATGAAATCTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| 3UTR-3UTR CAA 90 bp | TGTCCTCATCCCTGCAGACTGCCCTCGTGGCGAGCGCTGCTTCCAGATGAGATGACGCGTGAGGTGGCTTaGCAGGAACTCCCAGCTTCT | + |
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Preference number: 3 (lower is better) Translates to: CPHPCRLPSWRALLPDEMTREVA*QELPAS Trigger: AGAAGCTGGGAGTTCCTGCAAAGCCACCTCACGCGT...CATCTCATCTGGAAGCAGCGCTCGCCACGAGGGCAGTCTGCAGGGATGAGGACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030813.10 ENSMUST00000177408.2 |
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| 3UTR TCA 72 bp | TTATTCCCAGGGACCACCAGTCACCGCGATGGAGGCTaGGACCTGAAGCCACAGCAGCTGGGCTCAGCAAAC | + |
|
Preference number: 3 (lower is better) Translates to: LFPGTTSHRDGG*DLKPQQLGSAN Trigger: GTTTGCTGAGCCCAGCTGCTGTGGCTTCAGGTCTCAGCCTCCATCGCGGTGACTGGTGGTCCCTGGGAATAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| 3UTR GCA 72 bp | CCCCGACAGCCAGCACAGCTGATTGCTAGCCCACTTTaGCAGTCACTAAGTCACGCTGTGCCACCCAAGTGC | + |
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Preference number: 3 (lower is better) Translates to: PRQPAQLIASPL*QSLSHAVPPKC Trigger: GCACTTGGGTGGCACAGCGTGACTTAGTGACTGGCAAAGTGGGCTAGCAATCAGCTGTGCTGGCTGTCGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| 3UTR GCA 72 bp | CTTTGCCAGTCACTAAGTCACGCTGTGCCACCCAAGTaGAAGCCTTTCCTATGCCCCGTGACGCGTGAGGTG | + |
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Preference number: 3 (lower is better) Translates to: LCQSLSHAVPPK*KPFLCPVTREV Trigger: CACCTCACGCGTCACGGGGCATAGGAAAGGCTTGCACTTGGGTGGCACAGCGTGACTTAGTGACTGGCAAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030813.10 ENSMUST00000177408.2 |
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| 3UTR CCA 72 bp | GCTTTATTTATTCCCAGGGACCACCAGTCACCGCGATaGAGGCTGAGACCTGAAGCCACAGCAGCTGGGCTC | + |
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Preference number: 3 (lower is better) Translates to: ALFIPRDHQSPR*RLRPEATAAGL Trigger: GAGCCCAGCTGCTGTGGCTTCAGGTCTCAGCCTCCATCGCGGTGACTGGTGGTCCCTGGGAATAAATAAAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| 3UTR GCA 72 bp | AATACAGGCAGCCACACAAGTGCAGAGTCCTGGGGATaGAACTCAGACCTCTGTCAGCCAGAGCTGGGTCAC | + |
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Preference number: 3 (lower is better) Translates to: NTGSHTSAESWG*NSDLCQPELGH Trigger: GTGACCCAGCTCTGGCTGACAGAGGTCTGAGTTGCATCCCCAGGACTCTGCACTTGTGTGGCTGCCTGTATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105695.2 |
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| 3UTR TCA 72 bp | CTGCTGAGACCCGCATTCGACCTGGGAAATAAACAGTaGAGGACTAAGCTCACCCCGACAGCCAGCACAGCT | + |
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Preference number: 3 (lower is better) Translates to: LLRPAFDLGNKQ*RTKLTPTASTA Trigger: AGCTGTGCTGGCTGTCGGGGTGAGCTTAGTCCTTCACTGTTTATTTCCCAGGTCGAATGCGGGTCTCAGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| 3UTR GCA 72 bp | CGTCCAGCTCCTCAGCCATGGACTCCCGAGAGCTCCTaGTTTCATCTTCCGGCTTTCTTTTCTTCTTGGCCT | + |
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Preference number: 3 (lower is better) Translates to: RPAPQPWTPESS*FHLPAFFSSWP Trigger: AGGCCAAGAAGAAAAGAAAGCCGGAAGATGAAAGCAGGAGCTCTCGGGAGTCCATGGCTGAGGAGCTGGACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177408.2 |
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| 3UTR CCA 72 bp | CCTGGGGATGCAACTCAGACCTCTGTCAGCCAGAGCTaGGTCACTCGGAGACCCGCAAGAAAACTCAGAAAT | + |
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Preference number: 3 (lower is better) Translates to: PGDATQTSVSQS*VTRRPARKLRN Trigger: ATTTCTGAGTTTTCTTGCGGGTCTCCGAGTGACCCAGCTCTGGCTGACAGAGGTCTGAGTTGCATCCCCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105695.2 |
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| 3UTR CCA 72 bp | GTTTTTAATACAGGCAGCCACACAAGTGCAGAGTCCTaGGGATGCAACTCAGACCTCTGTCAGCCAGAGCTG | + |
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Preference number: 3 (lower is better) Translates to: VFNTGSHTSAES*GCNSDLCQPEL Trigger: CAGCTCTGGCTGACAGAGGTCTGAGTTGCATCCCCAGGACTCTGCACTTGTGTGGCTGCCTGTATTAAAAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105695.2 |
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| 3UTR TCA 72 bp | AGACCCGCAAGAAAACTCAGAAATACCGAGGCGGTCTaGACTGACGTGTTCAGAGCAGATGTTAATCCCCAG | + |
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Preference number: 3 (lower is better) Translates to: RPARKLRNTEAV*TDVFRADVNPQ Trigger: CTGGGGATTAACATCTGCTCTGAACACGTCAGTTCAGACCGCCTCGGTATTTCTGAGTTTTCTTGCGGGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105695.2 |
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| 3UTR GCA 72 bp | CTAAAAGCAGGCATGTCTGAATCGGTCAAGTATAGATaGGGATGCAGAAGAGAGACGGGACCAAAGGCCTTC | + |
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Preference number: 3 (lower is better) Translates to: LKAGMSESVKYR*GCRRETGPKAF Trigger: GAAGGCCTTTGGTCCCGTCTCTCTTCTGCATCCGCATCTATACTTGACCGATTCAGACATGCCTGCTTTTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105696.8 |
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| CDS-3UTR CCA 90 bp | TTCCCATGTCTGTCCTCATCCCTGCAGACTGCCCTCGTGGCGAGCGCTGCTTCCCCTTTCAGGTTAAGCTaGGCAATCTCTTCATTCTTC | + |
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Preference number: 4 (lower is better) Translates to: FPCLSSSLQTALVASAASPFRLS*AISSFF Trigger: GAAGAATGAAGAGATTGCCCAGCTTAACCTGAAAGG...GGAAGCAGCGCTCGCCACGAGGGCAGTCTGCAGGGATGAGGACAGACATGGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| CDS-3UTR CCA 90 bp | CTTCTGAAATCAGCCCTGAAGAGTAAGAGATTTCATTCCCAGGGACCACCAGTCCCAGCTCCTCAGCCATaGACTCCCGAGAGCTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: LLKSALKSKRFHSQGPPVPAPQP*TPESSC Trigger: GCAGGAGCTCTCGGGAGTCCATGGCTGAGGAGCTGG...GACTGGTGGTCCCTGGGAATGAAATCTCTTACTCTTCAGGGCTGATTTCAGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| CDS-3UTR CCA 90 bp | CCAGCTCCTCAGCCATGGACTCCCGAGAGCTCCTGCTTTCATCTTCCGGCTTTCTTCTTTTCGCGTGTCTaGCAAACATTTCAAGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: PAPQPWTPESSCFHLPAFFFSRV*QTFQGL Trigger: AAGACCTTGAAATGTTTGCCAGACACGCGAAAAGAA...GAAAGCCGGAAGATGAAAGCAGGAGCTCTCGGGAGTCCATGGCTGAGGAGCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177408.2 |
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| CDS-3UTR CCA 90 bp | GTCAGCCAGAGCTGGGTCACTCGGAGACCCGCAAGAAAACTCAGAAATACCGAGGCTTCTCTACCCACCTaGCAAACATTTCAAGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: VSQSWVTRRPARKLRNTEASLPT*QTFQGL Trigger: AAGACCTTGAAATGTTTGCCAGGTGGGTAGAGAAGC...CTCGGTATTTCTGAGTTTTCTTGCGGGTCTCCGAGTGACCCAGCTCTGGCTGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105695.2 |
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| CDS-3UTR TCA 90 bp | CTAAAAGCAGGCATGTCTGAATCGGTCAAGTATAGATGCGGATGCAGAAGAGAGTCCTGGGCCTCTCAGTaGCATGCACACTTGCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: LKAGMSESVKYRCGCRRESWASQ*HAHLQS Trigger: ACTCTGCAAGTGTGCATGTCACTGAGAGGCCCAGGA...CTCTCTTCTGCATCCGCATCTATACTTGACCGATTCAGACATGCCTGCTTTTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105696.8 |
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| CDS-3UTR CCA 90 bp | GCCGGGCTCAGCAAACACAGCTTTATTTATTCCCAGGGACCACCAGTCACCGCGTTCTTTTCGCGTGTCTaGCAAACATTTCAAGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: AGLSKHSFIYSQGPPVTAFFSRV*QTFQGL Trigger: AAGACCTTGAAATGTTTGCCAGACACGCGAAAAGAA...CGCGGTGACTGGTGGTCCCTGGGAATAAATAAAGCTGTGTTTGCTGAGCCCGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| CDS-3UTR GCA 90 bp | CTAAAAGCAGGCATGTCTGAATCGGTCAAGTATAGATGCGGATGCAGAAGAGAGGGCCTCTCAGTGACATaGACACTTGCAGAGTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: LKAGMSESVKYRCGCRREGLSVT*TLAEFL Trigger: CAGGAACTCTGCAAGTGTGCATGTCACTGAGAGGCC...CTCTCTTCTGCATCCGCATCTATACTTGACCGATTCAGACATGCCTGCTTTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105696.8 |
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| CDS-3UTR CCA 90 bp | AGCCACACAAGTGCAGAGTCCTGGGGATGCAACTCAGACCTCTGTCAGCCAGAGACATTTCAAGGTCTTTaGCAAAATTTTCGCACTGTC | + |
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Preference number: 4 (lower is better) Translates to: SHTSAESWGCNSDLCQPETFQGL*QNFRTV Trigger: GACAGTGCGAAAATTTTGCCAAAGACCTTGAAATGT...CTCTGGCTGACAGAGGTCTGAGTTGCATCCCCAGGACTCTGCACTTGTGTGGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000105695.2 |
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| CDS-3UTR CCA 90 bp | CCAGCTCCTCAGCCATGGACTCCCGAGAGCTCCTGCTTTCATCTTCCGGCTTTCACATTTCAAGGTCTTTaGCAAAATTTTCTCGGAGAT | + |
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Preference number: 4 (lower is better) Translates to: PAPQPWTPESSCFHLPAFTFQGL*QNFLGD Trigger: ATCTCCGAGAAAATTTTGCCAAAGACCTTGAAATGT...GAAAGCCGGAAGATGAAAGCAGGAGCTCTCGGGAGTCCATGGCTGAGGAGCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177408.2 |
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| CDS-3UTR GCA 90 bp | CTAAAAGCAGGCATGTCTGAATCGGTCAAGTATAGATGCGGATGCAGAAGAGAGAGTGACATGCACACTTaGAGAGTTCCTGGTCTAGGG | + |
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Preference number: 4 (lower is better) Translates to: LKAGMSESVKYRCGCRRESDMHT*RVPGLG Trigger: CCCTAGACCAGGAACTCTGCAAGTGTGCATGTCACT...CTCTCTTCTGCATCCGCATCTATACTTGACCGATTCAGACATGCCTGCTTTTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105696.8 |
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| CDS-3UTR CCA 90 bp | AGCCGGGCTCAGCAAACACAGCTTTATTTATTCCCAGGGACCACCAGTCACCGCACATTTCAAGGTCTTTaGCAAAATTTTCGCACTGTC | + |
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Preference number: 4 (lower is better) Translates to: SRAQQTQLYLFPGTTSHRTFQGL*QNFRTV Trigger: GACAGTGCGAAAATTTTGCCAAAGACCTTGAAATGT...GCGGTGACTGGTGGTCCCTGGGAATAAATAAAGCTGTGTTTGCTGAGCCCGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| CDS-3UTR CCA 90 bp | CTAAAAGCAGGCATGTCTGAATCGGTCAAGTATAGATGCGGATGCAGAAGAGAGCACTTGCAGAGTTCCTaGTCTAGGGCTTTCCAAGAT | + |
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Preference number: 4 (lower is better) Translates to: LKAGMSESVKYRCGCRREHLQSS*SRAFQD Trigger: ATCTTGGAAAGCCCTAGACCAGGAACTCTGCAAGTG...CTCTCTTCTGCATCCGCATCTATACTTGACCGATTCAGACATGCCTGCTTTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105696.8 |
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| CDS-3UTR GCA 90 bp | CTAAAAGCAGGCATGTCTGAATCGGTCAAGTATAGATGCGGATGCAGAAGAGAGCCCAGGTCAGCAGTTTaGACATTTCTGGCAAACATT | + |
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Preference number: 4 (lower is better) Translates to: LKAGMSESVKYRCGCRREPRSAV*TFLANI Trigger: AATGTTTGCCAGAAATGTGCAAACTGCTGACCTGGG...CTCTCTTCTGCATCCGCATCTATACTTGACCGATTCAGACATGCCTGCTTTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105696.8 |
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| CDS-3UTR CCA 90 bp | CTAAAAGCAGGCATGTCTGAATCGGTCAAGTATAGATGCGGATGCAGAAGAGAGACATTTCAAGGTCTTTaGCAAAATTTTCGCACTGTC | + |
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Preference number: 4 (lower is better) Translates to: LKAGMSESVKYRCGCRRETFQGL*QNFRTV Trigger: GACAGTGCGAAAATTTTGCCAAAGACCTTGAAATGT...CTCTCTTCTGCATCCGCATCTATACTTGACCGATTCAGACATGCCTGCTTTTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000105696.8 |
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| CDS-3UTR CCA 90 bp | CTAAAAGCAGGCATGTCTGAATCGGTCAAGTATAGATGCGGATGCAGAAGAGAGCAGTTTGCACATTTCTaGCAAACATTTCAAGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: LKAGMSESVKYRCGCRREQFAHF*QTFQGL Trigger: AAGACCTTGAAATGTTTGCCAGAAATGTGCAAACTG...CTCTCTTCTGCATCCGCATCTATACTTGACCGATTCAGACATGCCTGCTTTTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105696.8 |
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| CDS-3UTR CAA 90 bp | TCCTGGGGATGCAACTCAGACCTCTGTCAGCCAGAGCTGGGTCACTCGGAGACCCTGAAGTTCACCTGTTaGTTCAGCGTGACTTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: SWGCNSDLCQPELGHSETLKFTC*FSVTSW Trigger: CCAGGAAGTCACGCTGAACAAACAGGTGAACTTCAG...GGTCTCCGAGTGACCCAGCTCTGGCTGACAGAGGTCTGAGTTGCATCCCCAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105695.2 |
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| CDS-3UTR CAA 90 bp | CCAGATGAGATGAAGGCCTTAGCTCTCGCTCTGCAGCTCCTCAGCCCCGTCCAGCTGAAGTTCACCTGTTaGTTCAGCGTGACTTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: PDEMKALALALQLLSPVQLKFTC*FSVTSW Trigger: CCAGGAAGTCACGCTGAACAAACAGGTGAACTTCAG...CTGGACGGGGCTGAGGAGCTGCAGAGCGAGAGCTAAGGCCTTCATCTCATCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177408.2 |
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| CDS-3UTR CAA 90 bp | CAGCAAACACAGCTTTATTTATTCACCCTGCTGAGACCCGCATTCGACCTGGGACTGAAGTTCACCTGTTaGTTCAGCGTGACTTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: QQTQLYLFTLLRPAFDLGLKFTC*FSVTSW Trigger: CCAGGAAGTCACGCTGAACAAACAGGTGAACTTCAG...TCCCAGGTCGAATGCGGGTCTCAGCAGGGTGAATAAATAAAGCTGTGTTTGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030813.10 |
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| CDS-3UTR CAA 90 bp | CTAAAAGCAGGCATGTCTGAATCGGTCAAGTATAGATGCGGATGCAGAAGAGAGCTGAAGTTCACCTGTTaGTTCAGCGTGACTTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: LKAGMSESVKYRCGCRRELKFTC*FSVTSW Trigger: CCAGGAAGTCACGCTGAACAAACAGGTGAACTTCAG...CTCTCTTCTGCATCCGCATCTATACTTGACCGATTCAGACATGCCTGCTTTTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105696.8 |
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| CDS-3UTR CAA 90 bp | CTAAAAGCAGGCATGTCTGAATCGGTCAAGTATAGATGCGGATGCAGAAGAGAGGCCCAGGTCAGCAGTTaGCACATTTCTGGCAAACAT | + |
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Preference number: 5 (lower is better) Translates to: LKAGMSESVKYRCGCRREAQVSS*HISGKH Trigger: ATGTTTGCCAGAAATGTGCAAACTGCTGACCTGGGC...CTCTCTTCTGCATCCGCATCTATACTTGACCGATTCAGACATGCCTGCTTTTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105696.8 |
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| CDS GCA 90 bp | AGAGTTCCTGGTCTAGGGCTTTCCAAGATGCCCAGGTCAGCAGTTTaGACATTTCTGGCAAACATTTCAAGGTCTTTGGCAAAATTTTCG | + |
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Preference number: 5 (lower is better) Translates to: RVPGLGLSKMPRSAV*TFLANISRSLAKFS Trigger: CGAAAATTTTGCCAAAGACCTTGAAATGTTTGCCAGAAATGTGCAAACTGCTGACCTGGGCATCTTGGAAAGCCCTAGACCAGGAACTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105696.8 |
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| CDS CAA 90 bp | TCGCACTGTCGAAAAGTCACCTCGGAGATCGCCGCGATGGTCTGTTaGCTGAAGTTCACCTGTTTGTTCAGCGTGACTTCCTGGCAGAGA | + |
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Preference number: 6 (lower is better) Translates to: SHCRKVTSEIAAMVC*LKFTCLFSVTSWQR Trigger: TCTCTGCCAGGAAGTCACGCTGAACAAACAGGTGAACTTCAGCAAACAGACCATCGCGGCGATCTCCGAGGTGACTTTTCGACAGTGCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030813.10 ENSMUST00000105695.2 ENSMUST00000105696.8 |
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| CDS CAA 90 bp | AAGGTCTTTGGCAAAATTTTCTCGGAGATCGCCGCGATGGTCTGTTaGCTGAAGTTCACCTGTTTGTTCAGCGTGACTTCCTGGCAGAGA | + |
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Preference number: 6 (lower is better) Translates to: KVFGKIFSEIAAMVC*LKFTCLFSVTSWQR Trigger: TCTCTGCCAGGAAGTCACGCTGAACAAACAGGTGAACTTCAGCAAACAGACCATCGCGGCGATCTCCGAGAAAATTTTGCCAAAGACCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177408.2 |
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| CDS GCA 72 bp | GGTCTAGGGCTTTCCAAGATGCCCAGGTCAGCAGTTTaGACATTTCTGGCAAACATTTCAAGGTCTTTGGCA | + |
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Preference number: 6 (lower is better) Translates to: GLGLSKMPRSAV*TFLANISRSLA Trigger: TGCCAAAGACCTTGAAATGTTTGCCAGAAATGTGCAAACTGCTGACCTGGGCATCTTGGAAAGCCCTAGACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105696.8 |
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