Pregenerated sensors for CENPQ (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023919Ensembl transcript IDs: ENSMUST00000087114.5, ENSMUST00000239430.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGATTGCTGGGAGTTCAAGGCCAAATGGGAGAAAGAATAAGTGCTaGGCCAGCCTAGGCTACAAACAGAGTGAGAGACTATTACTAAAA | + |
|
Preference number: 1 (lower is better) Translates to: RIAGSSRPNGRKNKC*ASLGYKQSERLLLK Trigger: TTTTAGTAATAGTCTCTCACTCTGTTTGTAGCCTAGGCTGGCTCAGCACTTATTCTTTCTCCCATTTGGCCTTGAACTCCCAGCAATCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087114.5 ENSMUST00000239430.2 |
||
| 3UTR CAA 90 bp | GAAGCTCGCCCCGGTAATCCCAGCACTCAGGATGCTGAGGCAGGATaGCTGGGAGTTCAAGGCCAAATGGGAGAAAGAATAAGTGCTGAG | + |
|
Preference number: 2 (lower is better) Translates to: EARPGNPSTQDAEAG*LGVQGQMGERISAE Trigger: CTCAGCACTTATTCTTTCTCCCATTTGGCCTTGAACTCCCAGCAATCCTGCCTCAGCATCCTGAGTGCTGGGATTACCGGGGCGAGCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087114.5 ENSMUST00000239430.2 |
||
| 3UTR-3UTR TCA 90 bp | TGGGCCAGATGTGAAGCTCGCCCCGGTAATCCCAGCACTCAGGATGCTGAGGCAAGGCTACAAACAGAGTaGGAGACTATTACTAAAAGA | + |
|
Preference number: 2 (lower is better) Translates to: WARCEARPGNPSTQDAEARLQTE*ETITKR Trigger: TCTTTTAGTAATAGTCTCTCACTCTGTTTGTAGCCT...TGCCTCAGCATCCTGAGTGCTGGGATTACCGGGGCGAGCTTCACATCTGGCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000087114.5 ENSMUST00000239430.2 |
||
| 3UTR-3UTR TCA 90 bp | GCTGAGGCAGGATTGCTGGGAGTTCAAGGCCAAATGGGAGAAAGAATAAGTGCTAGGCTACAAACAGAGTaGGAGACTATTACTAAAAGA | + |
|
Preference number: 2 (lower is better) Translates to: AEAGLLGVQGQMGERISARLQTE*ETITKR Trigger: TCTTTTAGTAATAGTCTCTCACTCTGTTTGTAGCCT...AGCACTTATTCTTTCTCCCATTTGGCCTTGAACTCCCAGCAATCCTGCCTCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087114.5 ENSMUST00000239430.2 |
||
| 3UTR TCA 72 bp | GGGAGTTCAAGGCCAAATGGGAGAAAGAATAAGTGCTaGGCCAGCCTAGGCTACAAACAGAGTGAGAGACTA | + |
|
Preference number: 3 (lower is better) Translates to: GSSRPNGRKNKC*ASLGYKQSERL Trigger: TAGTCTCTCACTCTGTTTGTAGCCTAGGCTGGCTCAGCACTTATTCTTTCTCCCATTTGGCCTTGAACTCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087114.5 ENSMUST00000239430.2 |
||
| CDS-3UTR GCA 90 bp | GCTCGCCCCGGTAATCCCAGCACTCAGGATGCTGAGGCAGGATTGCTGGGAGTTCAGGCTCTCTTCATTTaGTCTTTCCTGTGCCTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: ARPGNPSTQDAEAGLLGVQALFI*SFLCLF Trigger: GAAAAGGCACAGGAAAGAGCAAATGAAGAGAGCCTG...AACTCCCAGCAATCCTGCCTCAGCATCCTGAGTGCTGGGATTACCGGGGCGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR CCA 90 bp | GCTCGCCCCGGTAATCCCAGCACTCAGGATGCTGAGGCAGGATTGCTGGGAGTTCTCTTCAGTATCCTTTaGAAGAGGTTGCCAGGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: ARPGNPSTQDAEAGLLGVLFSIL*KRLPGC Trigger: ACAACCTGGCAACCTCTTCCAAAGGATACTGAAGAG...AACTCCCAGCAATCCTGCCTCAGCATCCTGAGTGCTGGGATTACCGGGGCGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR CCA 90 bp | TGGGCCAGATGTGAAGCTCGCCCCGGTAATCCCAGCACTCAGGATGCTGAGGCATCCAACCTCATTCTCTaGCAAATCCGCTTCCTTATT | + |
|
Preference number: 4 (lower is better) Translates to: WARCEARPGNPSTQDAEASNLIL*QIRFLI Trigger: AATAAGGAAGCGGATTTGCCAGAGAATGAGGTTGGA...TGCCTCAGCATCCTGAGTGCTGGGATTACCGGGGCGAGCTTCACATCTGGCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| 3UTR CAA 72 bp | CCCGGTAATCCCAGCACTCAGGATGCTGAGGCAGGATaGCTGGGAGTTCAAGGCCAAATGGGAGAAAGAATA | + |
|
Preference number: 4 (lower is better) Translates to: PGNPSTQDAEAG*LGVQGQMGERI Trigger: TATTCTTTCTCCCATTTGGCCTTGAACTCCCAGCAATCCTGCCTCAGCATCCTGAGTGCTGGGATTACCGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087114.5 ENSMUST00000239430.2 |
||
| CDS-3UTR TCA 90 bp | GCTCGCCCCGGTAATCCCAGCACTCAGGATGCTGAGGCAGGATTGCTGGGAGTTAATACTCTCAGTCATTaGCTCTGTGGTCTCTACTAT | + |
|
Preference number: 4 (lower is better) Translates to: ARPGNPSTQDAEAGLLGVNTLSH*LCGLYY Trigger: ATAGTAGAGACCACAGAGTCAATGACTGAGAGTATT...AACTCCCAGCAATCCTGCCTCAGCATCCTGAGTGCTGGGATTACCGGGGCGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR TCA 90 bp | TGGGCCAGATGTGAAGCTCGCCCCGGTAATCCCAGCACTCAGGATGCTGAGGCAGCTTTAAGACTTTTCTaGGAAAGTTCTGGAAGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: WARCEARPGNPSTQDAEAALRLF*ESSGRA Trigger: TGCTCTTCCAGAACTTTCTCAGAAAAGTCTTAAAGC...TGCCTCAGCATCCTGAGTGCTGGGATTACCGGGGCGAGCTTCACATCTGGCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR TCA 90 bp | TGGGCCAGATGTGAAGCTCGCCCCGGTAATCCCAGCACTCAGGATGCTGAGGCAGCCAAAATTTCTTCTTaGAGTATGGGTGCTTTAAGA | + |
|
Preference number: 4 (lower is better) Translates to: WARCEARPGNPSTQDAEAAKISS*SMGALR Trigger: TCTTAAAGCACCCATACTTCAAGAAGAAATTTTGGC...TGCCTCAGCATCCTGAGTGCTGGGATTACCGGGGCGAGCTTCACATCTGGCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR GCA 90 bp | TCTCCAGTTAAGTTGCACACCTTTGGGCCAGATGTGAAGCTCGCCCCGGTAATCGCCAGGTTGTTCTCTTaGTGGATGATATTTTTACCC | + |
|
Preference number: 4 (lower is better) Translates to: SPVKLHTFGPDVKLAPVIARLFS*WMIFLP Trigger: GGGTAAAAATATCATCCAGCAAGAGAACAACCTGGC...GATTACCGGGGCGAGCTTCACATCTGGCCCAAAGGTGTGCAACTTAACTGGAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR GCA 90 bp | GCTGAGGCAGGATTGCTGGGAGTTCAAGGCCAAATGGGAGAAAGAATAAGTGCTTCCTTTGGAAGAGGTTaGCAGGTTGTTCTCTTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: AEAGLLGVQGQMGERISASFGRG*QVVLLL Trigger: CAGCAAGAGAACAACCTGGCAACCTCTTCCAAAGGA...AGCACTTATTCTTTCTCCCATTTGGCCTTGAACTCCCAGCAATCCTGCCTCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR TCA 90 bp | TCTCCAGTTAAGTTGCACACCTTTGGGCCAGATGTGAAGCTCGCCCCGGTAATCTTATTGCTATCTATGTaGAATACCTGTTTCACCTCC | + |
|
Preference number: 4 (lower is better) Translates to: SPVKLHTFGPDVKLAPVILLLSM*NTCFTS Trigger: GGAGGTGAAACAGGTATTTCACATAGATAGCAATAA...GATTACCGGGGCGAGCTTCACATCTGGCCCAAAGGTGTGCAACTTAACTGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR GCA 90 bp | TCTCCAGTTAAGTTGCACACCTTTGGGCCAGATGTGAAGCTCGCCCCGGTAATCAGAGGACAGATGCTTTaGATGACTTCTGTTTCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: SPVKLHTFGPDVKLAPVIRGQML*MTSVSF Trigger: AAAAGAAACAGAAGTCATGCAAAGCATCTGTCCTCT...GATTACCGGGGCGAGCTTCACATCTGGCCCAAAGGTGTGCAACTTAACTGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| 3UTR CAA 72 bp | AAGGTTAATTGTTTTGAAGAAAGATCTCCAGTTAAGTaGCACACCTTTGGGCCAGATGTGAAGCTCGCCCCG | + |
|
Preference number: 4 (lower is better) Translates to: KVNCFEERSPVK*HTFGPDVKLAP Trigger: CGGGGCGAGCTTCACATCTGGCCCAAAGGTGTGCAACTTAACTGGAGATCTTTCTTCAAAACAATTAACCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000087114.5 ENSMUST00000239430.2 |
||
| CDS-3UTR GCA 90 bp | GCTGAGGCAGGATTGCTGGGAGTTCAAGGCCAAATGGGAGAAAGAATAAGTGCTGACTCCATCATACTTTaGAAATACTCTTCAGTATCC | + |
|
Preference number: 4 (lower is better) Translates to: AEAGLLGVQGQMGERISADSIIL*KYSSVS Trigger: GGATACTGAAGAGTATTTGCAAAGTATGATGGAGTC...AGCACTTATTCTTTCTCCCATTTGGCCTTGAACTCCCAGCAATCCTGCCTCAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR CCA 90 bp | GCTGAGGCAGGATTGCTGGGAGTTCAAGGCCAAATGGGAGAAAGAATAAGTGCTAGGTTGTTCTCTTGCTaGATGATATTTTTACCCGTT | + |
|
Preference number: 4 (lower is better) Translates to: AEAGLLGVQGQMGERISARLFSC*MIFLPV Trigger: AACGGGTAAAAATATCATCCAGCAAGAGAACAACCT...AGCACTTATTCTTTCTCCCATTTGGCCTTGAACTCCCAGCAATCCTGCCTCAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR TCA 90 bp | AATTGTTTTGAAGAAAGATCTCCAGTTAAGTTGCACACCTTTGGGCCAGATGTGTATTTCTTCCTGCAGTaGAGCCAGGCTCTCTTCATT | + |
|
Preference number: 4 (lower is better) Translates to: NCFEERSPVKLHTFGPDVYFFLQ*SQALFI Trigger: AATGAAGAGAGCCTGGCTTCACTGCAGGAAGAAATA...CACATCTGGCCCAAAGGTGTGCAACTTAACTGGAGATCTTTCTTCAAAACAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR TCA 90 bp | AATTGTTTTGAAGAAAGATCTCCAGTTAAGTTGCACACCTTTGGGCCAGATGTGAATTCCAAGAATGACTaGCTCCATCATACTTTGCAA | + |
|
Preference number: 4 (lower is better) Translates to: NCFEERSPVKLHTFGPDVNSKND*LHHTLQ Trigger: TTGCAAAGTATGATGGAGTCAGTCATTCTTGGAATT...CACATCTGGCCCAAAGGTGTGCAACTTAACTGGAGATCTTTCTTCAAAACAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR CCA 90 bp | AATTGTTTTGAAGAAAGATCTCCAGTTAAGTTGCACACCTTTGGGCCAGATGTGAATCCGCTTCCTTATTaGCTCTTTGTTTCAAACTTC | + |
|
Preference number: 4 (lower is better) Translates to: NCFEERSPVKLHTFGPDVNPLPY*LFVSNF Trigger: GAAGTTTGAAACAAAGAGCCAATAAGGAAGCGGATT...CACATCTGGCCCAAAGGTGTGCAACTTAACTGGAGATCTTTCTTCAAAACAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR CAA 90 bp | TGGGCCAGATGTGAAGCTCGCCCCGGTAATCCCAGCACTCAGGATGCTGAGGCAACTCTTCAGTATCCTTaGGAAGAGGTTGCCAGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: WARCEARPGNPSTQDAEATLQYP*EEVARL Trigger: CAACCTGGCAACCTCTTCCAAAGGATACTGAAGAGT...TGCCTCAGCATCCTGAGTGCTGGGATTACCGGGGCGAGCTTCACATCTGGCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR CAA 90 bp | AGATGTGAAGCTCGCCCCGGTAATCCCAGCACTCAGGATGCTGAGGCAGGATTGTGCCAGGTTGTTCTCTaGCTGGATGATATTTTTACC | + |
|
Preference number: 5 (lower is better) Translates to: RCEARPGNPSTQDAEAGLCQVVL*LDDIFT Trigger: GGTAAAAATATCATCCAGCAAGAGAACAACCTGGCA...CAATCCTGCCTCAGCATCCTGAGTGCTGGGATTACCGGGGCGAGCTTCACATCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR CAA 90 bp | GCTCGCCCCGGTAATCCCAGCACTCAGGATGCTGAGGCAGGATTGCTGGGAGTTTGCCAAAATTTCTTCTaGAAGTATGGGTGCTTTAAG | + |
|
Preference number: 5 (lower is better) Translates to: ARPGNPSTQDAEAGLLGVCQNFF*KYGCFK Trigger: CTTAAAGCACCCATACTTCAAGAAGAAATTTTGGCA...AACTCCCAGCAATCCTGCCTCAGCATCCTGAGTGCTGGGATTACCGGGGCGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR CAA 90 bp | AGATGTGAAGCTCGCCCCGGTAATCCCAGCACTCAGGATGCTGAGGCAGGATTGGTGGTCTCTACTATTTaGTCTATTTCTTCCTGCAGT | + |
|
Preference number: 5 (lower is better) Translates to: RCEARPGNPSTQDAEAGLVVSTI*SISSCS Trigger: ACTGCAGGAAGAAATAGACAAAATAGTAGAGACCAC...CAATCCTGCCTCAGCATCCTGAGTGCTGGGATTACCGGGGCGAGCTTCACATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR CAA 90 bp | TCTCCAGTTAAGTTGCACACCTTTGGGCCAGATGTGAAGCTCGCCCCGGTAATCGACTTCTGTTTCTTTTaGCTGTGTTTCCAACCTCAT | + |
|
Preference number: 5 (lower is better) Translates to: SPVKLHTFGPDVKLAPVIDFCFF*LCFQPH Trigger: ATGAGGTTGGAAACACAGCAAAAAGAAACAGAAGTC...GATTACCGGGGCGAGCTTCACATCTGGCCCAAAGGTGTGCAACTTAACTGGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR CAA 90 bp | GCTGAGGCAGGATTGCTGGGAGTTCAAGGCCAAATGGGAGAAAGAATAAGTGCTGAGGGACTTTCAGTGTaGCACATTGTTGTAGTAGTC | + |
|
Preference number: 5 (lower is better) Translates to: AEAGLLGVQGQMGERISAEGLSV*HIVVVV Trigger: GACTACTACAACAATGTGCAACACTGAAAGTCCCTC...AGCACTTATTCTTTCTCCCATTTGGCCTTGAACTCCCAGCAATCCTGCCTCAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR CAA 90 bp | TCTCCAGTTAAGTTGCACACCTTTGGGCCAGATGTGAAGCTCGCCCCGGTAATCAAATCCGCTTCCTTATaGGCTCTTTGTTTCAAACTT | + |
|
Preference number: 5 (lower is better) Translates to: SPVKLHTFGPDVKLAPVIKSASL*ALCFKL Trigger: AAGTTTGAAACAAAGAGCCAATAAGGAAGCGGATTT...GATTACCGGGGCGAGCTTCACATCTGGCCCAAAGGTGTGCAACTTAACTGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR CAA 90 bp | TTTGAAGAAAGATCTCCAGTTAAGTTGCACACCTTTGGGCCAGATGTGAAGCTCATCCTTTGGAAGAGGTaGCCAGGTTGTTCTCTTGCT | + |
|
Preference number: 5 (lower is better) Translates to: FEERSPVKLHTFGPDVKLILWKR*PGCSLA Trigger: AGCAAGAGAACAACCTGGCAACCTCTTCCAAAGGAT...GAGCTTCACATCTGGCCCAAAGGTGTGCAACTTAACTGGAGATCTTTCTTCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR CAA 90 bp | TTTGAAGAAAGATCTCCAGTTAAGTTGCACACCTTTGGGCCAGATGTGAAGCTCCCAGGCTCTCTTCATTaGCTCTTTCCTGTGCCTTTT | + |
|
Preference number: 5 (lower is better) Translates to: FEERSPVKLHTFGPDVKLPGSLH*LFPVPF Trigger: AAAAGGCACAGGAAAGAGCAAATGAAGAGAGCCTGG...GAGCTTCACATCTGGCCCAAAGGTGTGCAACTTAACTGGAGATCTTTCTTCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS GCA 90 bp | TCAGTCATTGACTCTGTGGTCTCTACTATTTTGTCTATTTCTTCCTaGAGTGAAGCCAGGCTCTCTTCATTTGCTCTTTCCTGTGCCTTT | + |
|
Preference number: 5 (lower is better) Translates to: SVIDSVVSTILSISS*SEARLSSFALSCAF Trigger: AAAGGCACAGGAAAGAGCAAATGAAGAGAGCCTGGCTTCACTGCAGGAAGAAATAGACAAAATAGTAGAGACCACAGAGTCAATGACTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR CAA 90 bp | AGGTTAATTGTTTTGAAGAAAGATCTCCAGTTAAGTTGCACACCTTTGGGCCAGGAAGAGGTTGCCAGGTaGTTCTCTTGCTGGATGATA | + |
|
Preference number: 5 (lower is better) Translates to: RLIVLKKDLQLSCTPLGQEEVAR*FSCWMI Trigger: TATCATCCAGCAAGAGAACAACCTGGCAACCTCTTC...CTGGCCCAAAGGTGTGCAACTTAACTGGAGATCTTTCTTCAAAACAATTAACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS TCA 90 bp | ACATACGTTGCTTGTCCTGTTACTTTAGAGGACAGATGCTTTGCATaGCTTCTGTTTCTTTTTGCTGTGTTTCCAACCTCATTCTCTGGC | + |
|
Preference number: 5 (lower is better) Translates to: TYVACPVTLEDRCFA*LLFLFAVFPTSFSG Trigger: GCCAGAGAATGAGGTTGGAAACACAGCAAAAAGAAACAGAAGTCATGCAAAGCATCTGTCCTCTAAAGTAACAGGACAAGCAACGTATGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS TCA 90 bp | GCTTCTTCAATGAATGCTGACACATTCTTCACTGGGGCTGAATCATaGAGAACATCCAAGTCCTTCAGAAGAGCATTCTGGTTTGGAATT | + |
|
Preference number: 5 (lower is better) Translates to: ASSMNADTFFTGAES*RTSKSFRRAFWFGI Trigger: AATTCCAAACCAGAATGCTCTTCTGAAGGACTTGGATGTTCTTCATGATTCAGCCCCAGTGAAGAATGTGTCAGCATTCATTGAAGAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR CAA 90 bp | AATTGTTTTGAAGAAAGATCTCCAGTTAAGTTGCACACCTTTGGGCCAGATGTGGAATACTCTCAGTCATaGACTCTGTGGTCTCTACTA | + |
|
Preference number: 5 (lower is better) Translates to: NCFEERSPVKLHTFGPDVEYSQS*TLWSLL Trigger: TAGTAGAGACCACAGAGTCAATGACTGAGAGTATTC...CACATCTGGCCCAAAGGTGTGCAACTTAACTGGAGATCTTTCTTCAAAACAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS TCA 90 bp | TGCCAGGTTGTTCTCTTGCTGGATGATATTTTTACCCGTTTTAGATaGACATACGTTGCTTGTCCTGTTACTTTAGAGGACAGATGCTTT | + |
|
Preference number: 5 (lower is better) Translates to: CQVVLLLDDIFTRFR*TYVACPVTLEDRCF Trigger: AAAGCATCTGTCCTCTAAAGTAACAGGACAAGCAACGTATGTTCATCTAAAACGGGTAAAAATATCATCCAGCAAGAGAACAACCTGGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS GCA 90 bp | ATGAACATACGTTGCTTGTCCTGTTACTTTAGAGGACAGATGCTTTaGATGACTTCTGTTTCTTTTTGCTGTGTTTCCAACCTCATTCTC | + |
|
Preference number: 5 (lower is better) Translates to: MNIRCLSCYFRGQML*MTSVSFCCVSNLIL Trigger: GAGAATGAGGTTGGAAACACAGCAAAAAGAAACAGAAGTCATGCAAAGCATCTGTCCTCTAAAGTAACAGGACAAGCAACGTATGTTCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS GCA 90 bp | AATACTCTTCAGTATCCTTTGGAAGAGGTTGCCAGGTTGTTCTCTTaGTGGATGATATTTTTACCCGTTTTAGATGAACATACGTTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: NTLQYPLEEVARLFS*WMIFLPVLDEHTLL Trigger: AAGCAACGTATGTTCATCTAAAACGGGTAAAAATATCATCCAGCAAGAGAACAACCTGGCAACCTCTTCCAAAGGATACTGAAGAGTATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS CCA 90 bp | GAATTTTATTCTTTAGGCTTTGAATACTCTCAGTCATTGACTCTGTaGTCTCTACTATTTTGTCTATTTCTTCCTGCAGTGAAGCCAGGC | + |
|
Preference number: 5 (lower is better) Translates to: EFYSLGFEYSQSLTL*SLLFCLFLPAVKPG Trigger: GCCTGGCTTCACTGCAGGAAGAAATAGACAAAATAGTAGAGACCACAGAGTCAATGACTGAGAGTATTCAAAGCCTAAAGAATAAAATTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS-3UTR CAA 90 bp | AATTGTTTTGAAGAAAGATCTCCAGTTAAGTTGCACACCTTTGGGCCAGATGTGGAAGAGCATTCTGGTTaGGAATTAGTGCCAAAATTT | + |
|
Preference number: 5 (lower is better) Translates to: NCFEERSPVKLHTFGPDVEEHSG*ELVPKF Trigger: AAATTTTGGCACTAATTCCAAACCAGAATGCTCTTC...CACATCTGGCCCAAAGGTGTGCAACTTAACTGGAGATCTTTCTTCAAAACAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS GCA 90 bp | TTTATGTTGAATAAAATTCCAAGAATGACTGACTCCATCATACTTTaGAAATACTCTTCAGTATCCTTTGGAAGAGGTTGCCAGGTTGTT | + |
|
Preference number: 5 (lower is better) Translates to: FMLNKIPRMTDSIIL*KYSSVSFGRGCQVV Trigger: AACAACCTGGCAACCTCTTCCAAAGGATACTGAAGAGTATTTGCAAAGTATGATGGAGTCAGTCATTCTTGGAATTTTATTCAACATAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS TCA 72 bp | ATGAATGCTGACACATTCTTCACTGGGGCTGAATCATaGAGAACATCCAAGTCCTTCAGAAGAGCATTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: MNADTFFTGAES*RTSKSFRRAFW Trigger: CCAGAATGCTCTTCTGAAGGACTTGGATGTTCTTCATGATTCAGCCCCAGTGAAGAATGTGTCAGCATTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS CAA 72 bp | ATACTCTCAGTCATTGACTCTGTGGTCTCTACTATTTaGTCTATTTCTTCCTGCAGTGAAGCCAGGCTCTCT | + |
|
Preference number: 6 (lower is better) Translates to: ILSVIDSVVSTI*SISSCSEARLS Trigger: AGAGAGCCTGGCTTCACTGCAGGAAGAAATAGACAAAATAGTAGAGACCACAGAGTCAATGACTGAGAGTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS GCA 72 bp | CAGTATCCTTTGGAAGAGGTTGCCAGGTTGTTCTCTTaGTGGATGATATTTTTACCCGTTTTAGATGAACAT | + |
|
Preference number: 6 (lower is better) Translates to: QYPLEEVARLFS*WMIFLPVLDEH Trigger: ATGTTCATCTAAAACGGGTAAAAATATCATCCAGCAAGAGAACAACCTGGCAACCTCTTCCAAAGGATACTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS CCA 72 bp | TCTGTTTCTTTTTGCTGTGTTTCCAACCTCATTCTCTaGCAAATCCGCTTCCTTATTGGCTCTTTGTTTCAA | + |
|
Preference number: 6 (lower is better) Translates to: SVSFCCVSNLIL*QIRFLIGSLFQ Trigger: TTGAAACAAAGAGCCAATAAGGAAGCGGATTTGCCAGAGAATGAGGTTGGAAACACAGCAAAAAGAAACAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS TCA 72 bp | GTTCTCTTGCTGGATGATATTTTTACCCGTTTTAGATaGACATACGTTGCTTGTCCTGTTACTTTAGAGGAC | + |
|
Preference number: 6 (lower is better) Translates to: VLLLDDIFTRFR*TYVACPVTLED Trigger: GTCCTCTAAAGTAACAGGACAAGCAACGTATGTTCATCTAAAACGGGTAAAAATATCATCCAGCAAGAGAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS TCA 72 bp | AGTTCTGGAAGAGCAAGTACTTTATTGCTATCTATGTaGAATACCTGTTTCACCTCCTGTTCCTCTTCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: SSGRASTLLLSM*NTCFTSCSSSS Trigger: AGAAGAAGAGGAACAGGAGGTGAAACAGGTATTTCACATAGATAGCAATAAAGTACTTGCTCTTCCAGAACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS CCA 72 bp | TCTTTAGGCTTTGAATACTCTCAGTCATTGACTCTGTaGTCTCTACTATTTTGTCTATTTCTTCCTGCAGTG | + |
|
Preference number: 6 (lower is better) Translates to: SLGFEYSQSLTL*SLLFCLFLPAV Trigger: CACTGCAGGAAGAAATAGACAAAATAGTAGAGACCACAGAGTCAATGACTGAGAGTATTCAAAGCCTAAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS CAA 72 bp | AATACTCTTCAGTATCCTTTGGAAGAGGTTGCCAGGTaGTTCTCTTGCTGGATGATATTTTTACCCGTTTTA | + |
|
Preference number: 6 (lower is better) Translates to: NTLQYPLEEVAR*FSCWMIFLPVL Trigger: TAAAACGGGTAAAAATATCATCCAGCAAGAGAACAACCTGGCAACCTCTTCCAAAGGATACTGAAGAGTATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS CAA 72 bp | GAAGAACATCCAAGTCCTTCAGAAGAGCATTCTGGTTaGGAATTAGTGCCAAAATTTCTTCTTGAAGTATGG | + |
|
Preference number: 6 (lower is better) Translates to: EEHPSPSEEHSG*ELVPKFLLEVW Trigger: CCATACTTCAAGAAGAAATTTTGGCACTAATTCCAAACCAGAATGCTCTTCTGAAGGACTTGGATGTTCTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS CAA 90 bp | TACTTTGCAAATACTCTTCAGTATCCTTTGGAAGAGGTTGCCAGGTaGTTCTCTTGCTGGATGATATTTTTACCCGTTTTAGATGAACAT | + |
|
Preference number: 6 (lower is better) Translates to: YFANTLQYPLEEVAR*FSCWMIFLPVLDEH Trigger: ATGTTCATCTAAAACGGGTAAAAATATCATCCAGCAAGAGAACAACCTGGCAACCTCTTCCAAAGGATACTGAAGAGTATTTGCAAAGTA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS GCA 72 bp | AATAAAATTCCAAGAATGACTGACTCCATCATACTTTaGAAATACTCTTCAGTATCCTTTGGAAGAGGTTGC | + |
|
Preference number: 6 (lower is better) Translates to: NKIPRMTDSIIL*KYSSVSFGRGC Trigger: GCAACCTCTTCCAAAGGATACTGAAGAGTATTTGCAAAGTATGATGGAGTCAGTCATTCTTGGAATTTTATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS CAA 72 bp | TTAAATAGTTCAACTTTCTTGGAGGGACTTTCAGTGTaGCACATTGTTGTAGTAGTCTTTTCTTCAACTGGT | + |
|
Preference number: 6 (lower is better) Translates to: LNSSTFLEGLSV*HIVVVVFSSTG Trigger: ACCAGTTGAAGAAAAGACTACTACAACAATGTGCAACACTGAAAGTCCCTCCAAGAAAGTTGAACTATTTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||
| CDS CAA 72 bp | GCATTTTTGACACATCCTTTAAATAGTTCAACTTTCTaGGAGGGACTTTCAGTGTTGCACATTGTTGTAGTA | + |
|
Preference number: 6 (lower is better) Translates to: AFLTHPLNSSTF*EGLSVLHIVVV Trigger: TACTACAACAATGTGCAACACTGAAAGTCCCTCCAAGAAAGTTGAACTATTTAAAGGATGTGTCAAAAATGC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087114.5 |
||