Pregenerated sensors for CENPP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021391Ensembl transcript IDs: ENSMUST00000021818.9
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATGGTTTCTAATTGGAAAAGAGAAATGCTCATAGTCAACATATTTTaGATGTTCCTCAGCCCAGCAATGTTCCTGTGTGTTTGCCAGCGG | + |
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Preference number: 1 (lower is better) Translates to: MVSNWKREMLIVNIF*MFLSPAMFLCVCQR Trigger: CCGCTGGCAAACACACAGGAACATTGCTGGGCTGAGGAACATTCAAAATATGTTGACTATGAGCATTTCTCTTTTCCAATTAGAAACCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS-3UTR GCA 90 bp | ACATATTTTGAATGTTCCTCAGCCCAGCAATGTTCCTGTGTGTTTGCCAGCGGGCTGGCTGTCTGGTACTaGGGATCTCCATGCAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: TYFECSSAQQCSCVFASGLAVWY*GSPCSG Trigger: CCCACTGCATGGAGATCCGCAGTACCAGACAGCCAG...CCCGCTGGCAAACACACAGGAACATTGCTGGGCTGAGGAACATTCAAAATATGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS-3UTR CCA 90 bp | ACATATTTTGAATGTTCCTCAGCCCAGCAATGTTCCTGTGTGTTTGCCAGCGGGGAGGTATACAGTATCTaGGTATTTCTCCTTGAAATG | + |
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Preference number: 4 (lower is better) Translates to: TYFECSSAQQCSCVFASGEVYSI*VFLLEM Trigger: CATTTCAAGGAGAAATACCCAGATACTGTATACCTC...CCCGCTGGCAAACACACAGGAACATTGCTGGGCTGAGGAACATTCAAAATATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS-3UTR CCA 90 bp | AAGAGAAATGCTCATAGTCAACATATTTTGAATGTTCCTCAGCCCAGCAATGTTCACCAGTTCAAACCCTaGCTGTCTGGTACTGCGGAT | + |
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Preference number: 4 (lower is better) Translates to: KRNAHSQHILNVPQPSNVHQFKP*LSGTAD Trigger: ATCCGCAGTACCAGACAGCCAGGGTTTGAACTGGTG...AACATTGCTGGGCTGAGGAACATTCAAAATATGTTGACTATGAGCATTTCTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS-3UTR TCA 90 bp | AAGAGAAATGCTCATAGTCAACATATTTTGAATGTTCCTCAGCCCAGCAATGTTGAGGAGCAGTTTCTATaGCTCTGTTCTTGTCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: KRNAHSQHILNVPQPSNVEEQFL*LCSCPV Trigger: GACTGGACAAGAACAGAGTCATAGAAACTGCTCCTC...AACATTGCTGGGCTGAGGAACATTCAAAATATGTTGACTATGAGCATTTCTCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS-3UTR CCA 90 bp | AAGAGAAATGCTCATAGTCAACATATTTTGAATGTTCCTCAGCCCAGCAATGTTGAGAAGATCCAGCTTTaGAAAAACCATCCCTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: KRNAHSQHILNVPQPSNVEKIQL*KNHPFL Trigger: GAGGAAGGGATGGTTTTTCCAAAGCTGGATCTTCTC...AACATTGCTGGGCTGAGGAACATTCAAAATATGTTGACTATGAGCATTTCTCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS-3UTR GCA 90 bp | AAGAGAAATGCTCATAGTCAACATATTTTGAATGTTCCTCAGCCCAGCAATGTTGAAATGTCACCATGTTaGAATTTCCTGATAATCTGT | + |
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Preference number: 4 (lower is better) Translates to: KRNAHSQHILNVPQPSNVEMSPC*NFLIIC Trigger: ACAGATTATCAGGAAATTGCAACATGGTGACATTTC...AACATTGCTGGGCTGAGGAACATTCAAAATATGTTGACTATGAGCATTTCTCTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS GCA 90 bp | CTTCTCCCCAGCGTTTTGCAGCATTCTGCACTCTCGCTGCAGCGCTaGGACCTCCGCCTCCAGGGCGCGCAGTTCGCGGGTCTCGGAATC | + |
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Preference number: 5 (lower is better) Translates to: LLPSVLQHSALSLQR*DLRLQGAQFAGLGI Trigger: GATTCCGAGACCCGCGAACTGCGCGCCCTGGAGGCGGAGGTCGCAGCGCTGCAGCGAGAGTGCAGAATGCTGCAAAACGCTGGGGAGAAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS-3UTR CAA 90 bp | AGAAATGCTCATAGTCAACATATTTTGAATGTTCCTCAGCCCAGCAATGTTCCTGCTCGCTCTGGGACTTaGGTGAGAAGATCCAGCTTT | + |
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Preference number: 5 (lower is better) Translates to: RNAHSQHILNVPQPSNVPARSGT*VRRSSF Trigger: AAAGCTGGATCTTCTCACCAAAGTCCCAGAGCGAGC...AGGAACATTGCTGGGCTGAGGAACATTCAAAATATGTTGACTATGAGCATTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS-3UTR CAA 90 bp | AGAAATGCTCATAGTCAACATATTTTGAATGTTCCTCAGCCCAGCAATGTTCCTTCTGGGTATTTCTCCTaGAAATGCTTAAATGTGTTC | + |
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Preference number: 5 (lower is better) Translates to: RNAHSQHILNVPQPSNVPSGYFS*KCLNVF Trigger: GAACACATTTAAGCATTTCAAGGAGAAATACCCAGA...AGGAACATTGCTGGGCTGAGGAACATTCAAAATATGTTGACTATGAGCATTTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS TCA 90 bp | GTAAGTTTACTTAGAAATGAGTGCTCAGATCTTAAATGTTCAAGCTaGCTTCTCAAGTCTTTCAAAGATTCCCACTCCTCAGAATCTGAT | + |
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Preference number: 5 (lower is better) Translates to: VSLLRNECSDLKCSS*LLKSFKDSHSSESD Trigger: ATCAGATTCTGAGGAGTGGGAATCTTTGAAAGACTTGAGAAGTCAGCTTGAACATTTAAGATCTGAGCACTCATTTCTAAGTAAACTTAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS GCA 72 bp | AGCGTTTTGCAGCATTCTGCACTCTCGCTGCAGCGCTaGGACCTCCGCCTCCAGGGCGCGCAGTTCGCGGGT | + |
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Preference number: 6 (lower is better) Translates to: SVLQHSALSLQR*DLRLQGAQFAG Trigger: ACCCGCGAACTGCGCGCCCTGGAGGCGGAGGTCGCAGCGCTGCAGCGAGAGTGCAGAATGCTGCAAAACGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS GCA 72 bp | TTCTCCCCAGCGTTTTGCAGCATTCTGCACTCTCGCTaGAGCGCTGCGACCTCCGCCTCCAGGGCGCGCAGT | + |
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Preference number: 6 (lower is better) Translates to: FSPAFCSILHSR*SAATSASRARS Trigger: ACTGCGCGCCCTGGAGGCGGAGGTCGCAGCGCTGCAGCGAGAGTGCAGAATGCTGCAAAACGCTGGGGAGAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS GCA 72 bp | CTCCGGACGCCTTCTCCCCAGCGTTTTGCAGCATTCTaGACTCTCGCTGCAGCGCTGCGACCTCCGCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: LRTPSPQRFAAF*TLAAALRPPPP Trigger: TGGAGGCGGAGGTCGCAGCGCTGCAGCGAGAGTGCAGAATGCTGCAAAACGCTGGGGAGAAGGCGTCCGGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS GCA 72 bp | AGACAATCACCAGTTCAAACCCTGGCTGTCTGGTACTaGGGATCTCCATGCAGTGGGAACAGGTACCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: RQSPVQTLAVWY*GSPCSGNRYPP Trigger: TGGAGGGTACCTGTTCCCACTGCATGGAGATCCGCAGTACCAGACAGCCAGGGTTTGAACTGGTGATTGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS CAA 72 bp | CGGAAACTGAGAGGAGCAGTTTCTATGACTCTGTTCTaGTCCAGTCCTAGGGCTCGCTCTGGGACTTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: RKLRGAVSMTLF*SSPRARSGTLV Trigger: CACCAAAGTCCCAGAGCGAGCCCTAGGACTGGACAAGAACAGAGTCATAGAAACTGCTCCTCTCAGTTTCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS TCA 72 bp | TCTTGTCCAGTCCTAGGGCTCGCTCTGGGACTTTGGTaGGAAGATCCAGCTTTGGAAAAACCATCCCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: SCPVLGLALGLW*EDPALEKPSLP Trigger: AGGAAGGGATGGTTTTTCCAAAGCTGGATCTTCTCACCAAAGTCCCAGAGCGAGCCCTAGGACTGGACAAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS CAA 72 bp | CTGTTCTTGTCCAGTCCTAGGGCTCGCTCTGGGACTTaGGTGAGAAGATCCAGCTTTGGAAAAACCATCCCT | + |
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Preference number: 6 (lower is better) Translates to: LFLSSPRARSGT*VRRSSFGKTIP Trigger: AGGGATGGTTTTTCCAAAGCTGGATCTTCTCACCAAAGTCCCAGAGCGAGCCCTAGGACTGGACAAGAACAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS CAA 90 bp | GGTGAGAAGATCCAGCTTTGGAAAAACCATCCCTTCCTCATCGATTaGTATCTTCCAGACAATCACCAGTTCAAACCCTGGCTGTCTGGT | + |
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Preference number: 6 (lower is better) Translates to: GEKIQLWKNHPFLID*YLPDNHQFKPWLSG Trigger: ACCAGACAGCCAGGGTTTGAACTGGTGATTGTCTGGAAGATACAAATCGATGAGGAAGGGATGGTTTTTCCAAAGCTGGATCTTCTCACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS CCA 72 bp | GGCTCGCTCTGGGACTTTGGTGAGAAGATCCAGCTTTaGAAAAACCATCCCTTCCTCATCGATTTGTATCTT | + |
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Preference number: 6 (lower is better) Translates to: GSLWDFGEKIQL*KNHPFLIDLYL Trigger: AAGATACAAATCGATGAGGAAGGGATGGTTTTTCCAAAGCTGGATCTTCTCACCAAAGTCCCAGAGCGAGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS CCA 72 bp | GTGGGAACAGGTACCCTCCAAGAGGTATACAGTATCTaGGTATTTCTCCTTGAAATGCTTAAATGTGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: VGTGTLQEVYSI*VFLLEMLKCVL Trigger: GAGAACACATTTAAGCATTTCAAGGAGAAATACCCAGATACTGTATACCTCTTGGAGGGTACCTGTTCCCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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| CDS CAA 90 bp | GAACAGGTACCCTCCAAGAGGTATACAGTATCTGGGTATTTCTCCTaGAAATGCTTAAATGTGTTCTCACGATATTCACACCACTCCACA | + |
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Preference number: 6 (lower is better) Translates to: EQVPSKRYTVSGYFS*KCLNVFSRYSHHST Trigger: TGTGGAGTGGTGTGAATATCGTGAGAACACATTTAAGCATTTCAAGGAGAAATACCCAGATACTGTATACCTCTTGGAGGGTACCTGTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021818.9 |
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