Pregenerated sensors for CENPK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021714Ensembl transcript IDs: ENSMUST00000022227.8, ENSMUST00000070761.10, ENSMUST00000224500.2, ENSMUST00000224857.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGTGTAAAGATTCCGTACTGTGTGAAAACAGGTCATCATTTTACTaGTGGAAAGCTTCTAACCTTATTTGGGATGGATCTTCTGGATGT | + |
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Preference number: 1 (lower is better) Translates to: GCKDSVLCENRSSFY*WKASNLIWDGSSGC Trigger: ACATCCAGAAGATCCATCCCAAATAAGGTTAGAAGCTTTCCATCAGTAAAATGATGACCTGTTTTCACACAGTACGGAATCTTTACACCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224500.2 |
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| 3UTR-3UTR TCA 90 bp | TTATTTGGGATGGATCTTCTGGATGTCTCAAAGCAATTCCGTAACGCAGAAGTAGCAAGAGCTTCTCCTTaGATTCCTTTATCCCACGGA | + |
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Preference number: 2 (lower is better) Translates to: LFGMDLLDVSKQFRNAEVARASP*IPLSHG Trigger: TCCGTGGGATAAAGGAATTCAAGGAGAAGCTCTTGC...TACTTCTGCGTTACGGAATTGCTTTGAGACATCCAGAAGATCCATCCCAAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224500.2 |
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| 3UTR-3UTR GCA 90 bp | CTTCTGGATGTCTCAAAGCAATTCCGTAACGCAGAAGTAGCTCAATATATGGTGGTGTCCAGTATTTGCTaGTGTTCATCCAACCACTGT | + |
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Preference number: 2 (lower is better) Translates to: LLDVSKQFRNAEVAQYMVVSSIC*CSSNHC Trigger: ACAGTGGTTGGATGAACAGCAGCAAATACTGGACAC...CACCATATATTGAGCTACTTCTGCGTTACGGAATTGCTTTGAGACATCCAGAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224500.2 |
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| 3UTR-3UTR GCA 90 bp | CTTCTGGATGTCTCAAAGCAATTCCGTAACGCAGAAGTAGCTCAATATATGGTGTCATCCAACCACTGTTaGTCCCTTTCTAAGTCTTCT | + |
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Preference number: 2 (lower is better) Translates to: LLDVSKQFRNAEVAQYMVSSNHC*SLSKSS Trigger: AGAAGACTTAGAAAGGGAGCAACAGTGGTTGGATGA...CACCATATATTGAGCTACTTCTGCGTTACGGAATTGCTTTGAGACATCCAGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224500.2 |
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| 3UTR-3UTR GCA 90 bp | CATTCGAGTCTTGAATGTTTTTCCTTTTCTTTGGAGTACTTGCTTCAGGCAGAGAGAGTGTCCAGTATTTaGTGCTGTTCATCCAACCAC | + |
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Preference number: 2 (lower is better) Translates to: HSSLECFSFSLEYLLQAERVSSI*CCSSNH Trigger: GTGGTTGGATGAACAGCAGCAAATACTGGACACTCT...CTCTGCCTGAAGCAAGTACTCCAAAGAAAAGGAAAAACATTCAAGACTCGAATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000224500.2 |
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| 3UTR-3UTR GCA 90 bp | CTTCTGGATGTCTCAAAGCAATTCCGTAACGCAGAAGTAGCTCAATATATGGTGTTTCTTTGGAGTACTTaGTTCAGGCAGAGGAAAATG | + |
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Preference number: 2 (lower is better) Translates to: LLDVSKQFRNAEVAQYMVFLWST*FRQRKM Trigger: CATTTTCCTCTGCCTGAAGCAAGTACTCCAAAGAAA...CACCATATATTGAGCTACTTCTGCGTTACGGAATTGCTTTGAGACATCCAGAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224500.2 |
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| 3UTR-3UTR TCA 90 bp | GGTAACTATGATAGGATAAAGGAATATTTGTGTGTATGTCTCATTATGCCACACGCAAGAGCTTCTCCTTaGATTCCTTTATCCCACGGA | + |
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Preference number: 2 (lower is better) Translates to: GNYDRIKEYLCVCLIMPHARASP*IPLSHG Trigger: TCCGTGGGATAAAGGAATTCAAGGAGAAGCTCTTGC...GTGTGGCATAATGAGACATACACACAAATATTCCTTTATCCTATCATAGTTACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224857.2 |
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| 3UTR-3UTR TCA 90 bp | CATTCGAGTCTTGAATGTTTTTCCTTTTCTTTGGAGTACTTGCTTCAGGCAGAGGTTAATGTTACCACCTaGTTTTCCACATCACTGTTT | + |
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Preference number: 2 (lower is better) Translates to: HSSLECFSFSLEYLLQAEVNVTT*FSTSLF Trigger: AAACAGTGATGTGGAAAATCAGGTGGTAACATTAAC...CTCTGCCTGAAGCAAGTACTCCAAAGAAAAGGAAAAACATTCAAGACTCGAATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000224500.2 |
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| 3UTR-3UTR GCA 90 bp | CTTCTCCTTGAATTCCTTTATCCCACGGATCTTAGTTGTCAGTTCATTAAAGATTCATCCAACCACTGTTaGTCCCTTTCTAAGTCTTCT | + |
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Preference number: 2 (lower is better) Translates to: LLLEFLYPTDLSCQFIKDSSNHC*SLSKSS Trigger: AGAAGACTTAGAAAGGGAGCAACAGTGGTTGGATGA...ATCTTTAATGAACTGACAACTAAGATCCGTGGGATAAAGGAATTCAAGGAGAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000224500.2 ENSMUST00000224857.2 |
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| 3UTR-3UTR GCA 90 bp | GGTAACTATGATAGGATAAAGGAATATTTGTGTGTATGTCTCATTATGCCACACGTGTCCAGTATTTGCTaGTGTTCATCCAACCACTGT | + |
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Preference number: 2 (lower is better) Translates to: GNYDRIKEYLCVCLIMPHVSSIC*CSSNHC Trigger: ACAGTGGTTGGATGAACAGCAGCAAATACTGGACAC...GTGTGGCATAATGAGACATACACACAAATATTCCTTTATCCTATCATAGTTACC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224857.2 |
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| 3UTR-3UTR GCA 90 bp | GGTAACTATGATAGGATAAAGGAATATTTGTGTGTATGTCTCATTATGCCACACTTTCTTTGGAGTACTTaGTTCAGGCAGAGGAAAATG | + |
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Preference number: 2 (lower is better) Translates to: GNYDRIKEYLCVCLIMPHFLWST*FRQRKM Trigger: CATTTTCCTCTGCCTGAAGCAAGTACTCCAAAGAAA...GTGTGGCATAATGAGACATACACACAAATATTCCTTTATCCTATCATAGTTACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224857.2 |
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| 3UTR-3UTR TCA 90 bp | GGTAACTATGATAGGATAAAGGAATATTTGTGTGTATGTCTCATTATGCCACACGTTAATGTTACCACCTaGTTTTCCACATCACTGTTT | + |
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Preference number: 2 (lower is better) Translates to: GNYDRIKEYLCVCLIMPHVNVTT*FSTSLF Trigger: AAACAGTGATGTGGAAAATCAGGTGGTAACATTAAC...GTGTGGCATAATGAGACATACACACAAATATTCCTTTATCCTATCATAGTTACC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224857.2 |
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| 3UTR-3UTR CAA 90 bp | AGCTTCTCCTTGAATTCCTTTATCCCACGGATCTTAGTTGTCAGTTCATTAAAGAAGAGTGTCCAGTATTaGCTGCTGTTCATCCAACCA | + |
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Preference number: 3 (lower is better) Translates to: SFSLNSFIPRILVVSSLKKSVQY*LLFIQP Trigger: TGGTTGGATGAACAGCAGCAAATACTGGACACTCTT...CTTTAATGAACTGACAACTAAGATCCGTGGGATAAAGGAATTCAAGGAGAAGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000224500.2 ENSMUST00000224857.2 |
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| 3UTR-3UTR CAA 90 bp | CTTCTCCTTGAATTCCTTTATCCCACGGATCTTAGTTGTCAGTTCATTAAAGATAAGAGTGTCCAGTATTaGCTGCTGTTCATCCAACCA | + |
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Preference number: 3 (lower is better) Translates to: LLLEFLYPTDLSCQFIKDKSVQY*LLFIQP Trigger: TGGTTGGATGAACAGCAGCAAATACTGGACACTCTT...ATCTTTAATGAACTGACAACTAAGATCCGTGGGATAAAGGAATTCAAGGAGAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000224500.2 ENSMUST00000224857.2 |
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| CDS-3UTR CCA 90 bp | CAGAATGATAAACAAATTAGAGGACAATGCTCAGGAATCGGCTCTCCATCCACTCCAACAAAGTCTCCCTaGGAAACCAACAACTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: QNDKQIRGQCSGIGSPSTPTKSP*ETNNSP Trigger: TGGAGAGTTGTTGGTTTCCCAGGGAGACTTTGTTGG...AGTGGATGGAGAGCCGATTCCTGAGCATTGTCCTCTAATTTGTTTATCATTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070761.10 |
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| CDS-3UTR GCA 90 bp | CAGAATGATAAACAAATTAGAGGACAATGCTCAGGAATCGGCTCTCCATCCACTGTGTCCAGTATTTGCTaGTGTTCATCCAACCACTGT | + |
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Preference number: 4 (lower is better) Translates to: QNDKQIRGQCSGIGSPSTVSSIC*CSSNHC Trigger: ACAGTGGTTGGATGAACAGCAGCAAATACTGGACAC...AGTGGATGGAGAGCCGATTCCTGAGCATTGTCCTCTAATTTGTTTATCATTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070761.10 |
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| CDS-3UTR GCA 90 bp | CAGAATGATAAACAAATTAGAGGACAATGCTCAGGAATCGGCTCTCCATCCACTTCATCCAACCACTGTTaGTCCCTTTCTAAGTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: QNDKQIRGQCSGIGSPSTSSNHC*SLSKSS Trigger: AGAAGACTTAGAAAGGGAGCAACAGTGGTTGGATGA...AGTGGATGGAGAGCCGATTCCTGAGCATTGTCCTCTAATTTGTTTATCATTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070761.10 |
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| CDS-3UTR TCA 90 bp | AATTGTGTTTTCTTTATCCATGGGTGTAAAGATTCCGTACTGTGTGAAAACAGGGCAAGAGCTTCTCCTTaGATTCCTTTATCCCACGGA | + |
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Preference number: 4 (lower is better) Translates to: NCVFFIHGCKDSVLCENRARASP*IPLSHG Trigger: TCCGTGGGATAAAGGAATTCAAGGAGAAGCTCTTGC...CCTGTTTTCACACAGTACGGAATCTTTACACCCATGGATAAAGAAAACACAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022227.8 |
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| CDS-3UTR TCA 90 bp | TTAAGTTCTGAAAATACTCTTCTAAATTTACTTGTCCCAGAGCTAGGAGGGAACGCAAGAGCTTCTCCTTaGATTCCTTTATCCCACGGA | + |
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Preference number: 4 (lower is better) Translates to: LSSENTLLNLLVPELGGNARASP*IPLSHG Trigger: TCCGTGGGATAAAGGAATTCAAGGAGAAGCTCTTGC...GTTCCCTCCTAGCTCTGGGACAAGTAAATTTAGAAGAGTATTTTCAGAACTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070761.10 |
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| CDS-3UTR TCA 90 bp | TTAAGTTCTGAAAATACTCTTCTAAATTTACTTGTCCCAGAGCTAGGAGGGAACGGATGCACTTGCCAATaGAAATGCAGCTTCCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: LSSENTLLNLLVPELGGNGCTCQ*KCSFLQ Trigger: TTGGAGGAAGCTGCATTTTCATTGGCAAGTGCATCC...GTTCCCTCCTAGCTCTGGGACAAGTAAATTTAGAAGAGTATTTTCAGAACTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070761.10 |
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| CDS-3UTR GCA 90 bp | AATTGTGTTTTCTTTATCCATGGGTGTAAAGATTCCGTACTGTGTGAAAACAGGGTGTCCAGTATTTGCTaGTGTTCATCCAACCACTGT | + |
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Preference number: 4 (lower is better) Translates to: NCVFFIHGCKDSVLCENRVSSIC*CSSNHC Trigger: ACAGTGGTTGGATGAACAGCAGCAAATACTGGACAC...CCTGTTTTCACACAGTACGGAATCTTTACACCCATGGATAAAGAAAACACAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022227.8 |
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| CDS-3UTR GCA 90 bp | AATTGTGTTTTCTTTATCCATGGGTGTAAAGATTCCGTACTGTGTGAAAACAGGAGAGTGTCCAGTATTTaGTGCTGTTCATCCAACCAC | + |
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Preference number: 4 (lower is better) Translates to: NCVFFIHGCKDSVLCENRRVSSI*CCSSNH Trigger: GTGGTTGGATGAACAGCAGCAAATACTGGACACTCT...CCTGTTTTCACACAGTACGGAATCTTTACACCCATGGATAAAGAAAACACAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022227.8 |
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| CDS-3UTR GCA 90 bp | AATTGTGTTTTCTTTATCCATGGGTGTAAAGATTCCGTACTGTGTGAAAACAGGTCATCCAACCACTGTTaGTCCCTTTCTAAGTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: NCVFFIHGCKDSVLCENRSSNHC*SLSKSS Trigger: AGAAGACTTAGAAAGGGAGCAACAGTGGTTGGATGA...CCTGTTTTCACACAGTACGGAATCTTTACACCCATGGATAAAGAAAACACAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022227.8 |
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| CDS-3UTR GCA 90 bp | AATTGTGTTTTCTTTATCCATGGGTGTAAAGATTCCGTACTGTGTGAAAACAGGTTTCTTTGGAGTACTTaGTTCAGGCAGAGGAAAATG | + |
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Preference number: 4 (lower is better) Translates to: NCVFFIHGCKDSVLCENRFLWST*FRQRKM Trigger: CATTTTCCTCTGCCTGAAGCAAGTACTCCAAAGAAA...CCTGTTTTCACACAGTACGGAATCTTTACACCCATGGATAAAGAAAACACAATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022227.8 |
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| CDS-3UTR GCA 90 bp | TTAAGTTCTGAAAATACTCTTCTAAATTTACTTGTCCCAGAGCTAGGAGGGAACTTTCTTTGGAGTACTTaGTTCAGGCAGAGGAAAATG | + |
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Preference number: 4 (lower is better) Translates to: LSSENTLLNLLVPELGGNFLWST*FRQRKM Trigger: CATTTTCCTCTGCCTGAAGCAAGTACTCCAAAGAAA...GTTCCCTCCTAGCTCTGGGACAAGTAAATTTAGAAGAGTATTTTCAGAACTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070761.10 |
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| CDS-3UTR CCA 90 bp | AATTGTGTTTTCTTTATCCATGGGTGTAAAGATTCCGTACTGTGTGAAAACAGGGCTTCTAACCTTATTTaGGATGGATCTTCTGGATGT | + |
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Preference number: 4 (lower is better) Translates to: NCVFFIHGCKDSVLCENRASNLI*DGSSGC Trigger: ACATCCAGAAGATCCATCCCAAATAAGGTTAGAAGC...CCTGTTTTCACACAGTACGGAATCTTTACACCCATGGATAAAGAAAACACAATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022227.8 |
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| CDS-3UTR TCA 90 bp | AATTGTGTTTTCTTTATCCATGGGTGTAAAGATTCCGTACTGTGTGAAAACAGGTTTCTTTTCTTCCATTaGCCAAGTTCAGCAGTCAAA | + |
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Preference number: 4 (lower is better) Translates to: NCVFFIHGCKDSVLCENRFLFFH*PSSAVK Trigger: TTTGACTGCTGAACTTGGTCAATGGAAGAAAAGAAA...CCTGTTTTCACACAGTACGGAATCTTTACACCCATGGATAAAGAAAACACAATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022227.8 ENSMUST00000224500.2 |
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| CDS-3UTR TCA 90 bp | TTAAGTTCTGAAAATACTCTTCTAAATTTACTTGTCCCAGAGCTAGGAGGGAACTTTCTTTTCTTCCATTaGCCAAGTTCAGCAGTCAAA | + |
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Preference number: 4 (lower is better) Translates to: LSSENTLLNLLVPELGGNFLFFH*PSSAVK Trigger: TTTGACTGCTGAACTTGGTCAATGGAAGAAAAGAAA...GTTCCCTCCTAGCTCTGGGACAAGTAAATTTAGAAGAGTATTTTCAGAACTTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070761.10 |
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| CDS-3UTR TCA 90 bp | CTTCTCCTTGAATTCCTTTATCCCACGGATCTTAGTTGTCAGTTCATTAAAGATTTTCTTTTCTTCCATTaGCCAAGTTCAGCAGTCAAA | + |
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Preference number: 4 (lower is better) Translates to: LLLEFLYPTDLSCQFIKDFLFFH*PSSAVK Trigger: TTTGACTGCTGAACTTGGTCAATGGAAGAAAAGAAA...ATCTTTAATGAACTGACAACTAAGATCCGTGGGATAAAGGAATTCAAGGAGAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000224500.2 ENSMUST00000224857.2 |
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| CDS-3UTR TCA 90 bp | AATTGTGTTTTCTTTATCCATGGGTGTAAAGATTCCGTACTGTGTGAAAACAGGGTTAATGTTACCACCTaGTTTTCCACATCACTGTTT | + |
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Preference number: 4 (lower is better) Translates to: NCVFFIHGCKDSVLCENRVNVTT*FSTSLF Trigger: AAACAGTGATGTGGAAAATCAGGTGGTAACATTAAC...CCTGTTTTCACACAGTACGGAATCTTTACACCCATGGATAAAGAAAACACAATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022227.8 |
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| CDS-3UTR TCA 90 bp | AATATATGGTGGCCAAAAGGAATCACGAATTTTAACATATGGATCATGTGGAACTTTCTTTTCTTCCATTaGCCAAGTTCAGCAGTCAAA | + |
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Preference number: 4 (lower is better) Translates to: NIWWPKGITNFNIWIMWNFLFFH*PSSAVK Trigger: TTTGACTGCTGAACTTGGTCAATGGAAGAAAAGAAA...GTTCCACATGATCCATATGTTAAAATTCGTGATTCCTTTTGGCCACCATATATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000224500.2 |
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| CDS-3UTR CAA 90 bp | CAGAATGATAAACAAATTAGAGGACAATGCTCAGGAATCGGCTCTCCATCCACTATCCAACGGATGCACTaGCCAATGAAAATGCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: QNDKQIRGQCSGIGSPSTIQRMH*PMKMQL Trigger: AAGCTGCATTTTCATTGGCAAGTGCATCCGTTGGAT...AGTGGATGGAGAGCCGATTCCTGAGCATTGTCCTCTAATTTGTTTATCATTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070761.10 |
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| CDS-3UTR CAA 90 bp | CAGAATGATAAACAAATTAGAGGACAATGCTCAGGAATCGGCTCTCCATCCACTTTTTCTTTTCTTCCATaGACCAAGTTCAGCAGTCAA | + |
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Preference number: 5 (lower is better) Translates to: QNDKQIRGQCSGIGSPSTFSFLP*TKFSSQ Trigger: TTGACTGCTGAACTTGGTCAATGGAAGAAAAGAAAA...AGTGGATGGAGAGCCGATTCCTGAGCATTGTCCTCTAATTTGTTTATCATTCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070761.10 |
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| CDS-3UTR CAA 90 bp | AATTGTGTTTTCTTTATCCATGGGTGTAAAGATTCCGTACTGTGTGAAAACAGGAAGAGTGTCCAGTATTaGCTGCTGTTCATCCAACCA | + |
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Preference number: 5 (lower is better) Translates to: NCVFFIHGCKDSVLCENRKSVQY*LLFIQP Trigger: TGGTTGGATGAACAGCAGCAAATACTGGACACTCTT...CCTGTTTTCACACAGTACGGAATCTTTACACCCATGGATAAAGAAAACACAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022227.8 |
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| CDS-3UTR CAA 90 bp | CTGTGCATTCGAGTCTTGAATGTTTTTCCTTTTCTTTGGAGTACTTGCTTCAGGTTTTCTTTTCTTCCATaGACCAAGTTCAGCAGTCAA | + |
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Preference number: 5 (lower is better) Translates to: LCIRVLNVFPFLWSTCFRFSFLP*TKFSSQ Trigger: TTGACTGCTGAACTTGGTCAATGGAAGAAAAGAAAA...CCTGAAGCAAGTACTCCAAAGAAAAGGAAAAACATTCAAGACTCGAATGCACAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000224500.2 |
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| CDS-3UTR CAA 90 bp | AGCTTCTCCTTGAATTCCTTTATCCCACGGATCTTAGTTGTCAGTTCATTAAAGTTTTCTTTTCTTCCATaGACCAAGTTCAGCAGTCAA | + |
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Preference number: 5 (lower is better) Translates to: SFSLNSFIPRILVVSSLKFSFLP*TKFSSQ Trigger: TTGACTGCTGAACTTGGTCAATGGAAGAAAAGAAAA...CTTTAATGAACTGACAACTAAGATCCGTGGGATAAAGGAATTCAAGGAGAAGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000224500.2 ENSMUST00000224857.2 |
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| CDS-3UTR CAA 90 bp | AATTGTGTTTTCTTTATCCATGGGTGTAAAGATTCCGTACTGTGTGAAAACAGGTTTTCTTTTCTTCCATaGACCAAGTTCAGCAGTCAA | + |
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Preference number: 5 (lower is better) Translates to: NCVFFIHGCKDSVLCENRFSFLP*TKFSSQ Trigger: TTGACTGCTGAACTTGGTCAATGGAAGAAAAGAAAA...CCTGTTTTCACACAGTACGGAATCTTTACACCCATGGATAAAGAAAACACAATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000022227.8 ENSMUST00000224500.2 |
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| CDS-3UTR CAA 90 bp | AATTGTGTTTTCTTTATCCATGGGTGTAAAGATTCCGTACTGTGTGAAAACAGGCTGTGCATTCGAGTCTaGAATGTTTTTCCTTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: NCVFFIHGCKDSVLCENRLCIRV*NVFPFL Trigger: AAGAAAAGGAAAAACATTCAAGACTCGAATGCACAG...CCTGTTTTCACACAGTACGGAATCTTTACACCCATGGATAAAGAAAACACAATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000022227.8 |
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| CDS-3UTR CAA 90 bp | TTAAGTTCTGAAAATACTCTTCTAAATTTACTTGTCCCAGAGCTAGGAGGGAACCTGTGCATTCGAGTCTaGAATGTTTTTCCTTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: LSSENTLLNLLVPELGGNLCIRV*NVFPFL Trigger: AAGAAAAGGAAAAACATTCAAGACTCGAATGCACAG...GTTCCCTCCTAGCTCTGGGACAAGTAAATTTAGAAGAGTATTTTCAGAACTTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000070761.10 |
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