Pregenerated sensors for CENPH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045273Ensembl transcript IDs: ENSMUST00000075550.4
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGACCGCCCGCTTCTTTCCAAGGCCTCCACGGCCAGACTCCTGCAGAGGATGCCACTGAAGCAGCAGAGTaGTTCCAAAAACACCATTTA | + |
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Preference number: 2 (lower is better) Translates to: GPPASFQGLHGQTPAEDATEAAE*FQKHHL Trigger: TAAATGGTGTTTTTGGAACCACTCTGCTGCTTCAGT...GGCATCCTCTGCAGGAGTCTGGCCGTGGAGGCCTTGGAAAGAAGCGGGCGGTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| 3UTR CCA 72 bp | TCACGGGGAAACGTTGGCAAGGAGATGCACATCCGGTaGCAGCAGGACCGCCCGCTTCTTTCCAAGGCCTCC | + |
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Preference number: 3 (lower is better) Translates to: SRGNVGKEMHIR*QQDRPLLSKAS Trigger: GGAGGCCTTGGAAAGAAGCGGGCGGTCCTGCTGCCACCGGATGTGCATCTCCTTGCCAACGTTTCCCCGTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS-3UTR GCA 90 bp | GCCCGCTTCTTTCCAAGGCCTCCACGGCCAGACTCCTGCAGAGGATGCCACTTTCGCTCCTCCGCGGCCTaGGACAGACCCCGCTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: ARFFPRPPRPDSCRGCHFRSSAA*DRPRFS Trigger: AGAGAAGCGGGGTCTGTCGCAGGCCGCGGAGGAGCG...AAAGTGGCATCCTCTGCAGGAGTCTGGCCGTGGAGGCCTTGGAAAGAAGCGGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS-3UTR GCA 90 bp | TGGCAGCAGGACCGCCCGCTTCTTTCCAAGGCCTCCACGGCCAGACTCCTGCAGAGGTCCTTCTCCAGCTaGAGCACTGTCTCTCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: WQQDRPLLSKASTARLLQRSFSS*STVSLR Trigger: CCTCAGAGAGACAGTGCTGCAGCTGGAGAAGGACCT...CTGCAGGAGTCTGGCCGTGGAGGCCTTGGAAAGAAGCGGGCGGTCCTGCTGCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS-3UTR CCA 90 bp | TGGCAGCAGGACCGCCCGCTTCTTTCCAAGGCCTCCACGGCCAGACTCCTGCAGTCTGAAGACTCCTCCTaGGACTTCATTATTAACTTT | + |
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Preference number: 4 (lower is better) Translates to: WQQDRPLLSKASTARLLQSEDSS*DFIINF Trigger: AAAGTTAATAATGAAGTCCCAGGAGGAGTCTTCAGA...CTGCAGGAGTCTGGCCGTGGAGGCCTTGGAAAGAAGCGGGCGGTCCTGCTGCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS-3UTR TCA 90 bp | GCCCGCTTCTTTCCAAGGCCTCCACGGCCAGACTCCTGCAGAGGATGCCACTTTGTAGTCTCTTCTTTCTaGCATCAAGCAGCTTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: ARFFPRPPRPDSCRGCHFVVSSF*HQAAFS Trigger: AGAAAAAGCTGCTTGATGTCAGAAAGAAGAGACTAC...AAAGTGGCATCCTCTGCAGGAGTCTGGCCGTGGAGGCCTTGGAAAGAAGCGGGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS-3UTR TCA 90 bp | ACTCCTGCAGAGGATGCCACTTTAATGAGCACAATTAAAACGAAAGGTTCTGTGGCAGCACTGTCTCTCTaGGGGCAGGGTCCTCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: TPAEDATLMSTIKTKGSVAALSL*GQGPLP Trigger: GGGCAGAGGACCCTGCCCTCAGAGAGACAGTGCTGC...CACAGAACCTTTCGTTTTAATTGTGCTCATTAAAGTGGCATCCTCTGCAGGAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS-3UTR GCA 90 bp | CCCGCTTCTTTCCAAGGCCTCCACGGCCAGACTCCTGCAGAGGATGCCACTTTATGTAGCTTTAATATGTaGTTCATGTCATCTGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: PASFQGLHGQTPAEDATLCSFNM*FMSSVS Trigger: GCTCACAGATGACATGAAGCACATATTAAAGCTACA...TAAAGTGGCATCCTCTGCAGGAGTCTGGCCGTGGAGGCCTTGGAAAGAAGCGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS-3UTR TCA 90 bp | AAGCAGCAGAGTGGTTCCAAAAACACCATTTACATTTCCCATGAACTCGGCTATAGCTGCTGTTTTGTCTaGGCTCTCAGCCTGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: KQQSGSKNTIYISHELGYSCCFV*ALSLSS Trigger: GCTGCTCAGGCTGAGAGCTCAGACAAAACAGCAGCT...ATAGCCGAGTTCATGGGAAATGTAAATGGTGTTTTTGGAACCACTCTGCTGCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS-3UTR TCA 90 bp | AGCAGCAGAGTGGTTCCAAAAACACCATTTACATTTCCCATGAACTCGGCTATTGCTTCATGTCATCTGTaGGCACACAATTCTCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: SSRVVPKTPFTFPMNSAIASCHL*AHNSQV Trigger: GACCTGAGAATTGTGTGCTCACAGATGACATGAAGC...AATAGCCGAGTTCATGGGAAATGTAAATGGTGTTTTTGGAACCACTCTGCTGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS-3UTR TCA 90 bp | GAGGATGCCACTTTAATGAGCACAATTAAAACGAAAGGTTCTGTGTCACATCAACTTTTTCTCCAGTTCTaGAGACTCCTCCTGGGACTT | + |
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Preference number: 4 (lower is better) Translates to: EDATLMSTIKTKGSVSHQLFLQF*RLLLGL Trigger: AAGTCCCAGGAGGAGTCTTCAGAACTGGAGAAAAAG...TTGATGTGACACAGAACCTTTCGTTTTAATTGTGCTCATTAAAGTGGCATCCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS-3UTR GCA 90 bp | AGAAGGAGAAAAGAAGACACAACCTTACTTAACACACACAACTTTGCACAGCGTTTACTTCTTGAAGCTTaGTTTAGTTGTAGTCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: RRRKEDTTLLNTHNFAQRLLLEA*FSCSLF Trigger: GAAGAGACTACAACTAAAGCAAGCTTCAAGAAGTAA...ACGCTGTGCAAAGTTGTGTGTGTTAAGTAAGGTTGTGTCTTCTTTTCTCCTTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| 3UTR CAA 72 bp | TACATTTCCCATGAACTCGGCTATTTAAATGACAGATaGGTCACAAAGCCAATTTTAAACTGCGGGATTCTT | + |
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Preference number: 4 (lower is better) Translates to: YISHELGYLNDR*VTKPILNCGIL Trigger: AAGAATCCCGCAGTTTAAAATTGGCTTTGTGACCAATCTGTCATTTAAATAGCCGAGTTCATGGGAAATGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS-3UTR GCA 90 bp | TCCAAAAACACCATTTACATTTCCCATGAACTCGGCTATTTAAATGACAGATTGTCGATCTGTTTTTCTTaGATAATCTGTTCTGGAGTT | + |
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Preference number: 4 (lower is better) Translates to: SKNTIYISHELGYLNDRLSICFS*IICSGV Trigger: AACTCCAGAACAGATTATGCAAGAAAAACAGATCGA...CAATCTGTCATTTAAATAGCCGAGTTCATGGGAAATGTAAATGGTGTTTTTGGA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS GCA 90 bp | GTCCTTCTCCAGCTGCAGCACTGTCTCTCTGAGGGCAGGGTCCTCTaGCCAGTTGGTTTTACTCGCCAAAATAAGGCCCTGGAATGTATG | + |
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Preference number: 5 (lower is better) Translates to: VLLQLQHCLSEGRVL*PVGFTRQNKALECM Trigger: CATACATTCCAGGGCCTTATTTTGGCGAGTAAAACCAACTGGGCAGAGGACCCTGCCCTCAGAGAGACAGTGCTGCAGCTGGAGAAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS-3UTR CAA 90 bp | CCCGCTTCTTTCCAAGGCCTCCACGGCCAGACTCCTGCAGAGGATGCCACTTTATCAGAATTCTCCATCTaGTCAACATCCTCTTTCTGT | + |
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Preference number: 5 (lower is better) Translates to: PASFQGLHGQTPAEDATLSEFSI*STSSFC Trigger: ACAGAAAGAGGATGTTGACAAGATGGAGAATTCTGA...TAAAGTGGCATCCTCTGCAGGAGTCTGGCCGTGGAGGCCTTGGAAAGAAGCGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS TCA 90 bp | TTTGTGTCGATCATGGACTTATATTCTAAGAGCTGCTGTTTTGTCTaGGCTCTCAGCCTGAGCAGCAGGCTGATACGGTCCTCGATACGC | + |
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Preference number: 5 (lower is better) Translates to: FVSIMDLYSKSCCFV*ALSLSSRLIRSSIR Trigger: GCGTATCGAGGACCGTATCAGCCTGCTGCTCAGGCTGAGAGCTCAGACAAAACAGCAGCTCTTAGAATATAAGTCCATGATCGACACAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS-3UTR CAA 90 bp | AAGCAGCAGAGTGGTTCCAAAAACACCATTTACATTTCCCATGAACTCGGCTATGGGTCCTCTGCCCAGTaGGTTTTACTCGCCAAAATA | + |
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Preference number: 5 (lower is better) Translates to: KQQSGSKNTIYISHELGYGSSAQ*VLLAKI Trigger: TATTTTGGCGAGTAAAACCAACTGGGCAGAGGACCC...ATAGCCGAGTTCATGGGAAATGTAAATGGTGTTTTTGGAACCACTCTGCTGCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS GCA 90 bp | GACTCCTCCTGGGACTTCATTATTAACTTTTGTAGCTTTAATATGTaGTTCATGTCATCTGTGAGCACACAATTCTCAGGTCCCATGTTC | + |
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Preference number: 5 (lower is better) Translates to: DSSWDFIINFCSFNM*FMSSVSTQFSGPMF Trigger: GAACATGGGACCTGAGAATTGTGTGCTCACAGATGACATGAAGCACATATTAAAGCTACAAAAGTTAATAATGAAGTCCCAGGAGGAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS-3UTR CAA 90 bp | AGAGAAGGAGAAAAGAAGACACAACCTTACTTAACACACACAACTTTGCACAGCTTCGATCTGTTTTTCTaGCATAATCTGTTCTGGAGT | + |
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Preference number: 5 (lower is better) Translates to: REGEKKTQPYLTHTTLHSFDLFF*HNLFWS Trigger: ACTCCAGAACAGATTATGCAAGAAAAACAGATCGAA...GCTGTGCAAAGTTGTGTGTGTTAAGTAAGGTTGTGTCTTCTTTTCTCCTTCTCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS TCA 90 bp | TCATTATTAACTTTTGTAGCTTTAATATGTGCTTCATGTCATCTGTaGGCACACAATTCTCAGGTCCCATGTTCTCCATGTTATCCCGAA | + |
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Preference number: 5 (lower is better) Translates to: SLLTFVALICASCHL*AHNSQVPCSPCYPE Trigger: TTCGGGATAACATGGAGAACATGGGACCTGAGAATTGTGTGCTCACAGATGACATGAAGCACATATTAAAGCTACAAAAGTTAATAATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS GCA 72 bp | AGGCTGATACGGTCCTCGATACGCTCCTCCGCGGCCTaGGACAGACCCCGCTTCTCTTCGCAGGCCTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: RLIRSSIRSSAA*DRPRFSSQASA Trigger: GGCTGAGGCCTGCGAAGAGAAGCGGGGTCTGTCGCAGGCCGCGGAGGAGCGTATCGAGGACCGTATCAGCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS CAA 72 bp | AGCACTGTCTCTCTGAGGGCAGGGTCCTCTGCCCAGTaGGTTTTACTCGCCAAAATAAGGCCCTGGAATGTA | + |
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Preference number: 6 (lower is better) Translates to: STVSLRAGSSAQ*VLLAKIRPWNV Trigger: TACATTCCAGGGCCTTATTTTGGCGAGTAAAACCAACTGGGCAGAGGACCCTGCCCTCAGAGAGACAGTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS TCA 72 bp | ATCATGGACTTATATTCTAAGAGCTGCTGTTTTGTCTaGGCTCTCAGCCTGAGCAGCAGGCTGATACGGTCC | + |
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Preference number: 6 (lower is better) Translates to: IMDLYSKSCCFV*ALSLSSRLIRS Trigger: GGACCGTATCAGCCTGCTGCTCAGGCTGAGAGCTCAGACAAAACAGCAGCTCTTAGAATATAAGTCCATGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS TCA 72 bp | ACTTTTGTAGCTTTAATATGTGCTTCATGTCATCTGTaGGCACACAATTCTCAGGTCCCATGTTCTCCATGT | + |
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Preference number: 6 (lower is better) Translates to: TFVALICASCHL*AHNSQVPCSPC Trigger: ACATGGAGAACATGGGACCTGAGAATTGTGTGCTCACAGATGACATGAAGCACATATTAAAGCTACAAAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS TCA 72 bp | GTTTTACTCGCCAAAATAAGGCCCTGGAATGTATGTTaGACAACTGTAGTGATCTTTATCTCCGTCTGTAGT | + |
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Preference number: 6 (lower is better) Translates to: VLLAKIRPWNVC*TTVVIFISVCS Trigger: ACTACAGACGGAGATAAAGATCACTACAGTTGTTCAACATACATTCCAGGGCCTTATTTTGGCGAGTAAAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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| CDS CCA 72 bp | TCAAGCAGCTTTTTCTCCAGTTCTGAAGACTCCTCCTaGGACTTCATTATTAACTTTTGTAGCTTTAATATG | + |
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Preference number: 6 (lower is better) Translates to: SSSFFSSSEDSS*DFIINFCSFNM Trigger: CATATTAAAGCTACAAAAGTTAATAATGAAGTCCCAGGAGGAGTCTTCAGAACTGGAGAAAAAGCTGCTTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075550.4 |
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