Pregenerated sensors for CENPA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029177Ensembl transcript IDs: ENSMUST00000031073.10, ENSMUST00000133316.8, ENSMUST00000134846.8, ENSMUST00000144742.6, ENSMUST00000149759.2, ENSMUST00000199320.5, ENSMUST00000199617.2
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCCTCGGATTCTCCTGGTCAACTGAATGTCTTTGGGGAAAAGCGTaGCCCGACCAGCATGTAAGGAGAGGAGGTAGGCGTCCTCAAAGA | + |
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Preference number: 1 (lower is better) Translates to: SLGFSWSTECLWGKA*PDQHVRRGGRRPQR Trigger: TCTTTGAGGACGCCTACCTCCTCTCCTTACATGCTGGTCGGGTCACGCTTTTCCCCAAAGACATTCAGTTGACCAGGAGAATCCGAGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR GCA 90 bp | GGAGCTCAAGGCAGGAATCTGGAGGCAGAATCCTTGGAGGAATGCTaGTTACGGCCTGCTCCCCTATCTTTAAATCCAGATAGGAGGTGG | + |
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Preference number: 1 (lower is better) Translates to: GAQGRNLEAESLEEC*LRPAPLSLNPDRRW Trigger: CCACCTCCTATCTGGATTTAAAGATAGGGGAGCAGGCCGTAAGCAGCATTCCTCCAAGGATTCTGCCTCCAGATTCCTGCCTTGAGCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134846.8 |
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| 3UTR TCA 90 bp | TTGATTTCCTTAAGCCACATGAATTTCTGTCTTCTGCGCAGTGTCTaGGAGCCGTCCATCAGCAGAAGCCAGGGCAGGAGCTCAAGGCAG | + |
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Preference number: 1 (lower is better) Translates to: LISLSHMNFCLLRSV*EPSISRSQGRSSRQ Trigger: CTGCCTTGAGCTCCTGCCCTGGCTTCTGCTGATGGACGGCTCTCAGACACTGCGCAGAAGACAGAAATTCATGTGGCTTAAGGAAATCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR TCA 90 bp | AGAGCTGCATGTTTGCTGACTGACAGACAAACATGGATGACAGGATaGGGTCACTCTGGAAGGCAGGCATTTATATGGCGGGACTGCCAC | + |
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Preference number: 1 (lower is better) Translates to: RAACLLTDRQTWMTG*GHSGRQAFIWRDCH Trigger: GTGGCAGTCCCGCCATATAAATGCCTGCCTTCCAGAGTGACCTCATCCTGTCATCCATGTTTGTCTGTCAGTCAGCAAACATGCAGCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144742.6 |
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| 3UTR-3UTR TCA 90 bp | TCGAGTCCATGGGAGCGAGTGGGCAGACCTCTGTGTCGGGGGAAGGCCACAGTCCCTCAAAGAGGTGGATaGGGAAAGCTTCTGCTGCCT | + |
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Preference number: 2 (lower is better) Translates to: SSPWERVGRPLCRGKATVPQRGG*GKLLLP Trigger: AGGCAGCAGAAGCTTTCCTCATCCACCTCTTTGAGG...GACTGTGGCCTTCCCCCGACACAGAGGTCTGCCCACTCGCTCCCATGGACTCGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR CCA 90 bp | TGGGAGCGAGTGGGCAGACCTCTGTGTCGGGGGAAGGCCACAGTCTTCTCCTTCAGGGCCAACAAGGCCTaGGCTTGCCACCAAAAATCC | + |
|
Preference number: 2 (lower is better) Translates to: WERVGRPLCRGKATVFSFRANKA*ACHQKS Trigger: GGATTTTTGGTGGCAAGCCCAGGCCTTGTTGGCCCT...GAAGGAGAAGACTGTGGCCTTCCCCCGACACAGAGGTCTGCCCACTCGCTCCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR GCA 90 bp | TGGGAGCGAGTGGGCAGACCTCTGTGTCGGGGGAAGGCCACAGTCTTCTCCTTCAACAAGGCCTGGGCTTaGCACCAAAAATCCACACCA | + |
|
Preference number: 2 (lower is better) Translates to: WERVGRPLCRGKATVFSFNKAWA*HQKSTP Trigger: TGGTGTGGATTTTTGGTGGCAAGCCCAGGCCTTGTT...GAAGGAGAAGACTGTGGCCTTCCCCCGACACAGAGGTCTGCCCACTCGCTCCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR CCA 90 bp | GAGGTGGATGAGGAAAGCTTCTGCTGCCTCCTGAAGGGCCAACAAGGCCTGGGCCTCAAGGCAGGAATCTaGAGGCAGAATCCTTGGAGG | + |
|
Preference number: 2 (lower is better) Translates to: EVDEESFCCLLKGQQGLGLKAGI*RQNPWR Trigger: CCTCCAAGGATTCTGCCTCCAGATTCCTGCCTTGAG...GCCCAGGCCTTGTTGGCCCTTCAGGAGGCAGCAGAAGCTTTCCTCATCCACCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR TCA 90 bp | CAACTCCAAAAGCTTCCAGGTAATGTACATTCCACTGGCAGCTTAGGGGAGTCCGCTTCTGCTGCCTCCTaGAGGGCCAACAAGGCCTGG | + |
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Preference number: 2 (lower is better) Translates to: QLQKLPGNVHSTGSLGESASAAS*RANKAW Trigger: CCAGGCCTTGTTGGCCCTTCAGGAGGCAGCAGAAGC...GGACTCCCCTAAGCTGCCAGTGGAATGTACATTACCTGGAAGCTTTTGGAGTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR TCA 90 bp | AGGCCACAGTCTTCTCCTTCAGAGACAGTTTTAAGGGCACCGTGTAGCCAGTATCTTCTGCGCAGTGTCTaGGAGCCGTCCATCAGCAGA | + |
|
Preference number: 2 (lower is better) Translates to: RPQSSPSETVLRAPCSQYLLRSV*EPSISR Trigger: TCTGCTGATGGACGGCTCTCAGACACTGCGCAGAAG...ATACTGGCTACACGGTGCCCTTAAAACTGTCTCTGAAGGAGAAGACTGTGGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR CCA 90 bp | CCAGTATTTAAAAACAGCAAAACCCAGCCAGCTCCTCCGACACCACTGTCAAGCAGGGCCAACAAGGCCTaGGCTTGCCACCAAAAATCC | + |
|
Preference number: 2 (lower is better) Translates to: PVFKNSKTQPAPPTPLSSRANKA*ACHQKS Trigger: GGATTTTTGGTGGCAAGCCCAGGCCTTGTTGGCCCT...GCTTGACAGTGGTGTCGGAGGAGCTGGCTGGGTTTTGCTGTTTTTAAATACTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR TCA 90 bp | CAACTCCAAAAGCTTCCAGGTAATGTACATTCCACTGGCAGCTTAGGGGAGTCCCCTCAAAGAGGTGGATaGGGAAAGCTTCTGCTGCCT | + |
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Preference number: 2 (lower is better) Translates to: QLQKLPGNVHSTGSLGESPQRGG*GKLLLP Trigger: AGGCAGCAGAAGCTTTCCTCATCCACCTCTTTGAGG...GGACTCCCCTAAGCTGCCAGTGGAATGTACATTACCTGGAAGCTTTTGGAGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR GCA 90 bp | ACTGTCAAGCTGCAACTCCAAAAGCTTCCAGGTAATGTACATTCCACTGGCAGCGAGGAAAGCTTCTGCTaGCTCCTGAAGGGCCAACAA | + |
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Preference number: 2 (lower is better) Translates to: TVKLQLQKLPGNVHSTGSEESFC*LLKGQQ Trigger: TTGTTGGCCCTTCAGGAGGCAGCAGAAGCTTTCCTC...GCTGCCAGTGGAATGTACATTACCTGGAAGCTTTTGGAGTTGCAGCTTGACAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR GCA 90 bp | CCGACACCACTGTCAAGCTGCAACTCCAAAAGCTTCCAGGTAATGTACATTCCAGAGGAAAGCTTCTGCTaGCTCCTGAAGGGCCAACAA | + |
|
Preference number: 2 (lower is better) Translates to: PTPLSSCNSKSFQVMYIPEESFC*LLKGQQ Trigger: TTGTTGGCCCTTCAGGAGGCAGCAGAAGCTTTCCTC...TGGAATGTACATTACCTGGAAGCTTTTGGAGTTGCAGCTTGACAGTGGTGTCGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR CCA 90 bp | CCAGTATTTAAAAACAGCAAAACCCAGCCAGCTCCTCCGACACCACTGTCAAGCGCGTCCTCAAAGAGGTaGATGAGGAAAGCTTCTGCT | + |
|
Preference number: 2 (lower is better) Translates to: PVFKNSKTQPAPPTPLSSASSKR*MRKASA Trigger: AGCAGAAGCTTTCCTCATCCACCTCTTTGAGGACGC...GCTTGACAGTGGTGTCGGAGGAGCTGGCTGGGTTTTGCTGTTTTTAAATACTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR CCA 90 bp | CCGACACCACTGTCAAGCTGCAACTCCAAAAGCTTCCAGGTAATGTACATTCCAGCGTCCTCAAAGAGGTaGATGAGGAAAGCTTCTGCT | + |
|
Preference number: 2 (lower is better) Translates to: PTPLSSCNSKSFQVMYIPASSKR*MRKASA Trigger: AGCAGAAGCTTTCCTCATCCACCTCTTTGAGGACGC...TGGAATGTACATTACCTGGAAGCTTTTGGAGTTGCAGCTTGACAGTGGTGTCGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR TCA 90 bp | CTGAACTTCTCACATATTTCTCTAACAACCATGCTGAAAGGCTTCTTCCTGAACCTTCTGCGCAGTGTCTaGGAGCCGTCCATCAGCAGA | + |
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Preference number: 2 (lower is better) Translates to: LNFSHISLTTMLKGFFLNLLRSV*EPSISR Trigger: TCTGCTGATGGACGGCTCTCAGACACTGCGCAGAAG...GTTCAGGAAGAAGCCTTTCAGCATGGTTGTTAGAGAAATATGTGAGAAGTTCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR CCA 90 bp | ACATATTTCTCTAACAACCATGCTGAAAGGCTTCTTCCTGAACAAGAGGTCTGTCCAGATAGGAGGTGGTaGGCTACAGTGGACTTGGCC | + |
|
Preference number: 2 (lower is better) Translates to: TYFSNNHAERLLPEQEVCPDRRW*ATVDLA Trigger: GGCCAAGTCCACTGTAGCCCACCACCTCCTATCTGG...ACAGACCTCTTGTTCAGGAAGAAGCCTTTCAGCATGGTTGTTAGAGAAATATGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134846.8 |
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| 3UTR-3UTR CCA 90 bp | CCAAAAATCCACACCACGGCTGAACTTCTCACATATTTCTCTAACAACCATGCTCTCAAGGCAGGAATCTaGAGGCAGAATCCTTGGAGG | + |
|
Preference number: 2 (lower is better) Translates to: PKIHTTAELLTYFSNNHALKAGI*RQNPWR Trigger: CCTCCAAGGATTCTGCCTCCAGATTCCTGCCTTGAG...AGCATGGTTGTTAGAGAAATATGTGAGAAGTTCAGCCGTGGTGTGGATTTTTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR CCA 90 bp | ACACCACTGTCAAGCTGCAACTCCAAAAGCTTCCAGGTAATGTACATTCCACTGAGCCTCGGATTCTCCTaGTCAACTGAATGTCTTTGG | + |
|
Preference number: 2 (lower is better) Translates to: TPLSSCNSKSFQVMYIPLSLGFS*STECLW Trigger: CCAAAGACATTCAGTTGACCAGGAGAATCCGAGGCT...CAGTGGAATGTACATTACCTGGAAGCTTTTGGAGTTGCAGCTTGACAGTGGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR CCA 90 bp | AAATCCACACCACGGCTGAACTTCTCACATATTTCTCTAACAACCATGCTGAAACTCAAGGCAGGAATCTaGAGGCAGAATCCTTGGAGG | + |
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Preference number: 2 (lower is better) Translates to: KSTPRLNFSHISLTTMLKLKAGI*RQNPWR Trigger: CCTCCAAGGATTCTGCCTCCAGATTCCTGCCTTGAG...TTTCAGCATGGTTGTTAGAGAAATATGTGAGAAGTTCAGCCGTGGTGTGGATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR TCA 90 bp | CAGTCTTCTCCTTCAGAGACAGTTTTAAGGGCACCGTGTAGCCAGTATTTAAAAGAGCTGCATGTTTGCTaGCTGACAGACAAACATGGA | + |
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Preference number: 2 (lower is better) Translates to: QSSPSETVLRAPCSQYLKELHVC*LTDKHG Trigger: TCCATGTTTGTCTGTCAGTCAGCAAACATGCAGCTC...TTTTAAATACTGGCTACACGGTGCCCTTAAAACTGTCTCTGAAGGAGAAGACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144742.6 |
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| 3UTR-3UTR TCA 90 bp | CAGTCTTCTCCTTCAGAGACAGTTTTAAGGGCACCGTGTAGCCAGTATTTAAAATGCATGTTTGCTGACTaGCAGACAAACATGGATGAC | + |
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Preference number: 2 (lower is better) Translates to: QSSPSETVLRAPCSQYLKCMFAD*QTNMDD Trigger: GTCATCCATGTTTGTCTGTCAGTCAGCAAACATGCA...TTTTAAATACTGGCTACACGGTGCCCTTAAAACTGTCTCTGAAGGAGAAGACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144742.6 |
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| 3UTR-3UTR GCA 90 bp | AAATCCACACCACGGCTGAACTTCTCACATATTTCTCTAACAACCATGCTGAAAAGGTCTGTGCTCTTCTaGAGGGTCTTGATTTCCTTA | + |
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Preference number: 2 (lower is better) Translates to: KSTPRLNFSHISLTTMLKRSVLF*RVLISL Trigger: TAAGGAAATCAAGACCCTGCAGAAGAGCACAGACCT...TTTCAGCATGGTTGTTAGAGAAATATGTGAGAAGTTCAGCCGTGGTGTGGATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR CAA 90 bp | GGGGGAAGGCCACAGTCTTCTCCTTCAGAGACAGTTTTAAGGGCACCGTGTAGCCTGGAGGCAGAATCCTaGGAGGAATGCTGCTTACGG | + |
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Preference number: 3 (lower is better) Translates to: GGRPQSSPSETVLRAPCSLEAES*EECCLR Trigger: CCGTAAGCAGCATTCCTCCAAGGATTCTGCCTCCAG...GCTACACGGTGCCCTTAAAACTGTCTCTGAAGGAGAAGACTGTGGCCTTCCCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR CAA 90 bp | TCGAGTCCATGGGAGCGAGTGGGCAGACCTCTGTGTCGGGGGAAGGCCACAGTCATTCGAGCCCCAGTCTaGAAGAGAAGAAAAGATTTT | + |
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Preference number: 3 (lower is better) Translates to: SSPWERVGRPLCRGKATVIRAPV*KRRKDF Trigger: AAAATCTTTTCTTCTCTTCAAGACTGGGGCTCGAAT...GACTGTGGCCTTCCCCCGACACAGAGGTCTGCCCACTCGCTCCCATGGACTCGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000144742.6 |
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| 3UTR GCA 72 bp | GGCAGGAATCTGGAGGCAGAATCCTTGGAGGAATGCTaGTTACGGCCTGCTCCCCTATACACTAAAGCTCTC | + |
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Preference number: 3 (lower is better) Translates to: GRNLEAESLEEC*LRPAPLYTKAL Trigger: GAGAGCTTTAGTGTATAGGGGAGCAGGCCGTAAGCAGCATTCCTCCAAGGATTCTGCCTCCAGATTCCTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031073.10 |
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| 3UTR-3UTR CAA 90 bp | CCAGTATTTAAAAACAGCAAAACCCAGCCAGCTCCTCCGACACCACTGTCAAGCCAACAAGGCCTGGGCTaGCCACCAAAAATCCACACC | + |
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Preference number: 3 (lower is better) Translates to: PVFKNSKTQPAPPTPLSSQQGLG*PPKIHT Trigger: GGTGTGGATTTTTGGTGGCAAGCCCAGGCCTTGTTG...GCTTGACAGTGGTGTCGGAGGAGCTGGCTGGGTTTTGCTGTTTTTAAATACTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR CAA 90 bp | CCGACACCACTGTCAAGCTGCAACTCCAAAAGCTTCCAGGTAATGTACATTCCACAACAAGGCCTGGGCTaGCCACCAAAAATCCACACC | + |
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Preference number: 3 (lower is better) Translates to: PTPLSSCNSKSFQVMYIPQQGLG*PPKIHT Trigger: GGTGTGGATTTTTGGTGGCAAGCCCAGGCCTTGTTG...TGGAATGTACATTACCTGGAAGCTTTTGGAGTTGCAGCTTGACAGTGGTGTCGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR GCA 72 bp | GGCAGGAATCTGGAGGCAGAATCCTTGGAGGAATGCTaGTTACGGCCTGCTCCCCTATCTTTAAATCCAGAT | + |
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Preference number: 3 (lower is better) Translates to: GRNLEAESLEEC*LRPAPLSLNPD Trigger: ATCTGGATTTAAAGATAGGGGAGCAGGCCGTAAGCAGCATTCCTCCAAGGATTCTGCCTCCAGATTCCTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134846.8 |
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| 3UTR-3UTR CAA 90 bp | CCACAGTCTTCTCCTTCAGAGACAGTTTTAAGGGCACCGTGTAGCCAGTATTTACTGGAGGCAGAATCCTaGGAGGAATGCTGCTTACGG | + |
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Preference number: 3 (lower is better) Translates to: PQSSPSETVLRAPCSQYLLEAES*EECCLR Trigger: CCGTAAGCAGCATTCCTCCAAGGATTCTGCCTCCAG...TAAATACTGGCTACACGGTGCCCTTAAAACTGTCTCTGAAGGAGAAGACTGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR GCA 72 bp | AAAACCCAGCCAGCTCCTCCGACACCACTGTCAAGCTaGAACTCCAAAAGCTTCCAGGTAATGTACATTCCA | + |
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Preference number: 3 (lower is better) Translates to: KTQPAPPTPLSS*NSKSFQVMYIP Trigger: TGGAATGTACATTACCTGGAAGCTTTTGGAGTTGCAGCTTGACAGTGGTGTCGGAGGAGCTGGCTGGGTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 ENSMUST00000144742.6 ENSMUST00000199617.2 |
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| 3UTR CCA 72 bp | CATAGGGCTGAGCAATTCACAAACCAAATTGACCTTTaGTCTGCAAACACTCGAGTCCATGGGAGCGAGTGG | + |
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Preference number: 3 (lower is better) Translates to: HRAEQFTNQIDL*SANTRVHGSEW Trigger: CCACTCGCTCCCATGGACTCGAGTGTTTGCAGACCAAAGGTCAATTTGGTTTGTGAATTGCTCAGCCCTATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 ENSMUST00000144742.6 ENSMUST00000199617.2 |
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| 3UTR TCA 72 bp | TGTTTGCTGACTGACAGACAAACATGGATGACAGGATaGGGTCACTCTGGAAGGCAGGCATTTATATGGCGG | + |
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Preference number: 3 (lower is better) Translates to: CLLTDRQTWMTG*GHSGRQAFIWR Trigger: CCGCCATATAAATGCCTGCCTTCCAGAGTGACCTCATCCTGTCATCCATGTTTGTCTGTCAGTCAGCAAACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144742.6 |
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| 3UTR-3UTR CAA 90 bp | CTGAACTTCTCACATATTTCTCTAACAACCATGCTGAAAGGCTTCTTCCTGAACCTGGAGGCAGAATCCTaGGAGGAATGCTGCTTACGG | + |
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Preference number: 3 (lower is better) Translates to: LNFSHISLTTMLKGFFLNLEAES*EECCLR Trigger: CCGTAAGCAGCATTCCTCCAAGGATTCTGCCTCCAG...GTTCAGGAAGAAGCCTTTCAGCATGGTTGTTAGAGAAATATGTGAGAAGTTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| 3UTR-3UTR CAA 90 bp | TGCAAACAGAGCAGTAAGAGTGAAATAACCATACCATGGCAGGTATCGGGTGTCAATTCACAAACCAAATaGACCTTTGGTCTGCAAACA | + |
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Preference number: 3 (lower is better) Translates to: CKQSSKSEITIPWQVSGVNSQTK*TFGLQT Trigger: TGTTTGCAGACCAAAGGTCAATTTGGTTTGTGAATT...GACACCCGATACCTGCCATGGTATGGTTATTTCACTCTTACTGCTCTGTTTGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000144742.6 ENSMUST00000199617.2 |
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| 3UTR TCA 72 bp | CAGCATTATAGTCCATGCTTGGCATGTACAAATCTTTaGATTCGAGCCCCAGTCTTGAAGAGAAGAAAAGAT | + |
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Preference number: 3 (lower is better) Translates to: QHYSPCLACTNL*IRAPVLKRRKD Trigger: ATCTTTTCTTCTCTTCAAGACTGGGGCTCGAATTCAAAGATTTGTACATGCCAAGCATGGACTATAATGCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144742.6 |
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| CDS-3UTR CCA 90 bp | TCGAGTCCATGGGAGCGAGTGGGCAGACCTCTGTGTCGGGGGAAGGCCACAGTCAGGGCCAACAAGGCCTaGGCTTGCCACCAAAAATCC | + |
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Preference number: 4 (lower is better) Translates to: SSPWERVGRPLCRGKATVRANKA*ACHQKS Trigger: GGATTTTTGGTGGCAAGCCCAGGCCTTGTTGGCCCT...GACTGTGGCCTTCCCCCGACACAGAGGTCTGCCCACTCGCTCCCATGGACTCGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000144742.6 ENSMUST00000199617.2 |
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| CDS-3UTR TCA 90 bp | GTCCATGGGAGCGAGTGGGCAGACCTCTGTGTCGGGGGAAGGCCACAGTCTTCTCCTCAAAGAGGTGGATaGGGAAAGCTTCTGCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: VHGSEWADLCVGGRPQSSPQRGG*GKLLLP Trigger: AGGCAGCAGAAGCTTTCCTCATCCACCTCTTTGAGG...AGAAGACTGTGGCCTTCCCCCGACACAGAGGTCTGCCCACTCGCTCCCATGGAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000144742.6 ENSMUST00000199617.2 |
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| CDS-3UTR GCA 90 bp | ACACTCGAGTCCATGGGAGCGAGTGGGCAGACCTCTGTGTCGGGGGAAGGCCACGATGAGGAAAGCTTCTaGTGCCTGGGCAGAAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: TLESMGASGQTSVSGEGHDEESF*CLGRRE Trigger: TTCTCTTCTGCCCAGGCAGCAGAAGCTTTCCTCATC...GTGGCCTTCCCCCGACACAGAGGTCTGCCCACTCGCTCCCATGGACTCGAGTGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000199617.2 |
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| CDS-3UTR CCA 90 bp | TCGAGTCCATGGGAGCGAGTGGGCAGACCTCTGTGTCGGGGGAAGGCCACAGTCGCGTCCTCAAAGAGGTaGATGAGGAAAGCTTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: SSPWERVGRPLCRGKATVASSKR*MRKASA Trigger: AGCAGAAGCTTTCCTCATCCACCTCTTTGAGGACGC...GACTGTGGCCTTCCCCCGACACAGAGGTCTGCCCACTCGCTCCCATGGACTCGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000144742.6 ENSMUST00000199617.2 |
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| CDS-3UTR CCA 90 bp | CCATGGGAGCGAGTGGGCAGACCTCTGTGTCGGGGGAAGGCCACAGTCTTCTCCAGCCTCGGATTCTCCTaGTCAACTGAATGTCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: PWERVGRPLCRGKATVFSSLGFS*STECLW Trigger: CCAAAGACATTCAGTTGACCAGGAGAATCCGAGGCT...GGAGAAGACTGTGGCCTTCCCCCGACACAGAGGTCTGCCCACTCGCTCCCATGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000144742.6 |
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| 3UTR CAA 72 bp | GCAGGAGCTCAAGGCAGGAATCTGGAGGCAGAATCCTaGGAGGAATGCTGCTTACGGCCTGCTCCCCTATAC | + |
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Preference number: 4 (lower is better) Translates to: AGAQGRNLEAES*EECCLRPAPLY Trigger: GTATAGGGGAGCAGGCCGTAAGCAGCATTCCTCCAAGGATTCTGCCTCCAGATTCCTGCCTTGAGCTCCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031073.10 |
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| 3UTR CAA 72 bp | GCAGGAGCTCAAGGCAGGAATCTGGAGGCAGAATCCTaGGAGGAATGCTGCTTACGGCCTGCTCCCCTATCT | + |
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Preference number: 4 (lower is better) Translates to: AGAQGRNLEAES*EECCLRPAPLS Trigger: AGATAGGGGAGCAGGCCGTAAGCAGCATTCCTCCAAGGATTCTGCCTCCAGATTCCTGCCTTGAGCTCCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| CDS-3UTR GCA 90 bp | GTCCATGGGAGCGAGTGGGCAGACCTCTGTGTCGGGGGAAGGCCACAGTCTTCTAGGTCTGTGCTCTTCTaGAGGGTCTTGATTTCCTTA | + |
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Preference number: 4 (lower is better) Translates to: VHGSEWADLCVGGRPQSSRSVLF*RVLISL Trigger: TAAGGAAATCAAGACCCTGCAGAAGAGCACAGACCT...AGAAGACTGTGGCCTTCCCCCGACACAGAGGTCTGCCCACTCGCTCCCATGGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000144742.6 ENSMUST00000199617.2 |
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| CDS-3UTR CCA 90 bp | GATTTCCTTAAGCCACATGAATTTCTGTCTTCTGCGCAGTGTCTGAGAGCCGTCGGAGGGTCTCCTCCTTaGGGTCTGCGGTTTGCGACG | + |
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Preference number: 4 (lower is better) Translates to: DFLKPHEFLSSAQCLRAVGGSPP*GLRFAT Trigger: CGTCGCAAACCGCAGACCCCAAGGAGGAGACCCTCC...GACGGCTCTCAGACACTGCGCAGAAGACAGAAATTCATGTGGCTTAAGGAAATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| CDS-3UTR CCA 90 bp | CTCTGTGTCGGGGGAAGGCCACAGTCTTCTCCTTCAGAGACAGTTTTAAGGGCAAGGGCCAACAAGGCCTaGGCTTGCCACCAAAAATCC | + |
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Preference number: 4 (lower is better) Translates to: LCVGGRPQSSPSETVLRARANKA*ACHQKS Trigger: GGATTTTTGGTGGCAAGCCCAGGCCTTGTTGGCCCT...TGCCCTTAAAACTGTCTCTGAAGGAGAAGACTGTGGCCTTCCCCCGACACAGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000144742.6 ENSMUST00000199617.2 |
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| CDS-3UTR TCA 90 bp | GTATTTAAAAACAGCAAAACCCAGCCAGCTCCTCCGACACCACTGTCAAGCTGCCTTCTGCGCAGTGTCTaGGAGCCTACACTGGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: VFKNSKTQPAPPTPLSSCLLRSV*EPTLEL Trigger: GAGCTCCAGTGTAGGCTCTCAGACACTGCGCAGAAG...GCAGCTTGACAGTGGTGTCGGAGGAGCTGGCTGGGTTTTGCTGTTTTTAAATAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000144742.6 ENSMUST00000199617.2 |
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| CDS-3UTR TCA 90 bp | CAACTCCAAAAGCTTCCAGGTAATGTACATTCCACTGGCAGCTTAGGGGAGTCCCTTCTGCGCAGTGTCTaGGAGCCTACACTGGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: QLQKLPGNVHSTGSLGESLLRSV*EPTLEL Trigger: GAGCTCCAGTGTAGGCTCTCAGACACTGCGCAGAAG...GGACTCCCCTAAGCTGCCAGTGGAATGTACATTACCTGGAAGCTTTTGGAGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199617.2 |
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| CDS-3UTR TCA 90 bp | CCACAGTCTTCTCCTTCAGAGACAGTTTTAAGGGCACCGTGTAGCCAGTATTTAGCTTCTGCTGCCTCCTaGAGGGCCAACAAGGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: PQSSPSETVLRAPCSQYLASAAS*RANKAW Trigger: CCAGGCCTTGTTGGCCCTTCAGGAGGCAGCAGAAGC...TAAATACTGGCTACACGGTGCCCTTAAAACTGTCTCTGAAGGAGAAGACTGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144742.6 |
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| CDS-3UTR CCA 90 bp | TGCAAACAGAGCAGTAAGAGTGAAATAACCATACCATGGCAGGTATCGGGTGTCGGAGGGTCTCCTCCTTaGGGTCTGCGGTTTGCGACG | + |
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Preference number: 4 (lower is better) Translates to: CKQSSKSEITIPWQVSGVGGSPP*GLRFAT Trigger: CGTCGCAAACCGCAGACCCCAAGGAGGAGACCCTCC...GACACCCGATACCTGCCATGGTATGGTTATTTCACTCTTACTGCTCTGTTTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000144742.6 ENSMUST00000199617.2 |
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| CDS-3UTR CCA 90 bp | CTAACAACCATGCTGAAAGGCTTCTTCCTGAACAAGAGGTCTGTGCTCTTCTGCCCAGATAGGAGGTGGTaGGCTACAGTGGACTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: LTTMLKGFFLNKRSVLFCPDRRW*ATVDLA Trigger: GGCCAAGTCCACTGTAGCCCACCACCTCCTATCTGG...GCAGAAGAGCACAGACCTCTTGTTCAGGAAGAAGCCTTTCAGCATGGTTGTTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133316.8 |
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| CDS-3UTR CCA 90 bp | CATATTTCTCTAACAACCATGCTGAAAGGCTTCTTCCTGAACAAGAGGTCTGTGGGAGGGTCTCCTCCTTaGGGTCTGCGGTTTGCGACG | + |
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Preference number: 4 (lower is better) Translates to: HISLTTMLKGFFLNKRSVGGSPP*GLRFAT Trigger: CGTCGCAAACCGCAGACCCCAAGGAGGAGACCCTCC...CACAGACCTCTTGTTCAGGAAGAAGCCTTTCAGCATGGTTGTTAGAGAAATATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031073.10 ENSMUST00000133316.8 ENSMUST00000134846.8 |
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| CDS-3UTR CCA 90 bp | GTATTTAAAAACAGCAAAACCCAGCCAGCTCCTCCGACACCACTGTCAAGCTGCGCGTCCTCAAAGAGGTaGATGAGGAAAGCTTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: VFKNSKTQPAPPTPLSSCASSKR*MRKASA Trigger: AGCAGAAGCTTTCCTCATCCACCTCTTTGAGGACGC...GCAGCTTGACAGTGGTGTCGGAGGAGCTGGCTGGGTTTTGCTGTTTTTAAATAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000144742.6 ENSMUST00000199617.2 |
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| CDS-3UTR TCA 90 bp | CCAGAAAGACATCTACTTCAGGCTGTGGATGTAGTTCAGCATTATAGTCCATGCCCTCAAAGAGGTGGATaGGGAAAGCTTCTGCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: PERHLLQAVDVVQHYSPCPQRGG*GKLLLP Trigger: AGGCAGCAGAAGCTTTCCTCATCCACCTCTTTGAGG...GCATGGACTATAATGCTGAACTACATCCACAGCCTGAAGTAGATGTCTTTCTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144742.6 |
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| CDS-3UTR GCA 90 bp | ACACCACTGTCAAGCTGCAACTCCAAAAGCTTCCAGGTAATGTACATTCCACTGAACAAGGCCTGGGCTTaGCACCAAAAATCCACACCA | + |
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Preference number: 4 (lower is better) Translates to: TPLSSCNSKSFQVMYIPLNKAWA*HQKSTP Trigger: TGGTGTGGATTTTTGGTGGCAAGCCCAGGCCTTGTT...CAGTGGAATGTACATTACCTGGAAGCTTTTGGAGTTGCAGCTTGACAGTGGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000144742.6 ENSMUST00000199617.2 |
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| CDS-3UTR CCA 90 bp | ACGGCTCACATACAACAGATTCAAGCGCTTTATTCAGGTTTTTCTTCCTTATATGGAGGGTCTCCTCCTTaGGGTCTGCGGTTTGCGACG | + |
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Preference number: 4 (lower is better) Translates to: TAHIQQIQALYSGFSSLYGGSPP*GLRFAT Trigger: CGTCGCAAACCGCAGACCCCAAGGAGGAGACCCTCC...ATATAAGGAAGAAAAACCTGAATAAAGCGCTTGAATCTGTTGTATGTGAGCCGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000144742.6 |
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| CDS-3UTR GCA 90 bp | ACTGTCAAGCTGCAACTCCAAAAGCTTCCAGGTAATGTACATTCCACTGGCAGCAGGTCTGTGCTCTTCTaGAGGGTCTTGATTTCCTTA | + |
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Preference number: 4 (lower is better) Translates to: TVKLQLQKLPGNVHSTGSRSVLF*RVLISL Trigger: TAAGGAAATCAAGACCCTGCAGAAGAGCACAGACCT...GCTGCCAGTGGAATGTACATTACCTGGAAGCTTTTGGAGTTGCAGCTTGACAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000144742.6 ENSMUST00000199617.2 |
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| CDS-3UTR GCA 90 bp | TCTCCTTCAGAGACAGTTTTAAGGGCACCGTGTAGCCAGTATTTAAAAACAGCAGAGGAAAGCTTCTGCTaGCTCCTGAAGGGCCAACAA | + |
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Preference number: 4 (lower is better) Translates to: SPSETVLRAPCSQYLKTAEESFC*LLKGQQ Trigger: TTGTTGGCCCTTCAGGAGGCAGCAGAAGCTTTCCTC...TGCTGTTTTTAAATACTGGCTACACGGTGCCCTTAAAACTGTCTCTGAAGGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144742.6 |
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| CDS-3UTR GCA 90 bp | CAGTCTTCTCCTTCAGAGACAGTTTTAAGGGCACCGTGTAGCCAGTATTTAAAAAACAAGGCCTGGGCTTaGCACCAAAAATCCACACCA | + |
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Preference number: 4 (lower is better) Translates to: QSSPSETVLRAPCSQYLKNKAWA*HQKSTP Trigger: TGGTGTGGATTTTTGGTGGCAAGCCCAGGCCTTGTT...TTTTAAATACTGGCTACACGGTGCCCTTAAAACTGTCTCTGAAGGAGAAGACTG 46% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000144742.6 ENSMUST00000199617.2 |
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| CDS-3UTR TCA 90 bp | TGCCACGGCTCACATACAACAGATTCAAGCGCTTTATTCAGGTTTTTCTTCCTTATTCTCCTGGTCAACTaGATGTCTTTGGGGAAAAGC | + |
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Preference number: 4 (lower is better) Translates to: CHGSHTTDSSALFRFFFLILLVN*MSLGKS Trigger: GCTTTTCCCCAAAGACATTCAGTTGACCAGGAGAAT...AAGGAAGAAAAACCTGAATAAAGCGCTTGAATCTGTTGTATGTGAGCCGTGGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000144742.6 |
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| CDS CCA 90 bp | GGCCCTCTACACTGGAGCTCTGTCGCGAGGGTCCAGGCGCCGGGCTaGAGGGTCTCCTCCTTGGGGTCTGCGGTTTGCGACGCGGGCCCA | + |
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Preference number: 5 (lower is better) Translates to: GPLHWSSVARVQAPG*RVSSLGSAVCDAGP Trigger: TGGGCCCGCGTCGCAAACCGCAGACCCCAAGGAGGAGACCCTCCAGCCCGGCGCCTGGACCCTCGCGACAGAGCTCCAGTGTAGAGGGCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133316.8 |
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| CDS CCA 90 bp | GAGAGCCTACACTGGAGCTCTGTCGCGAGGGTCCAGGCGCCGGGCTaGAGGGTCTCCTCCTTGGGGTCTGCGGTTTGCGACGCGGGCCCA | + |
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Preference number: 5 (lower is better) Translates to: ESLHWSSVARVQAPG*RVSSLGSAVCDAGP Trigger: TGGGCCCGCGTCGCAAACCGCAGACCCCAAGGAGGAGACCCTCCAGCCCGGCGCCTGGACCCTCGCGACAGAGCTCCAGTGTAGGCTCTC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000144742.6 ENSMUST00000199320.5 ENSMUST00000199617.2 |
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| CDS CCA 90 bp | CAACACCTACACTGGAGCTCTGTCGCGAGGGTCCAGGCGCCGGGCTaGAGGGTCTCCTCCTTGGGGTCTGCGGTTTGCGACGCGGGCCCA | + |
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Preference number: 5 (lower is better) Translates to: QHLHWSSVARVQAPG*RVSSLGSAVCDAGP Trigger: TGGGCCCGCGTCGCAAACCGCAGACCCCAAGGAGGAGACCCTCCAGCCCGGCGCCTGGACCCTCGCGACAGAGCTCCAGTGTAGGTGTTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031073.10 ENSMUST00000134846.8 |
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| CDS CCA 90 bp | CTAGTGCTACACTGGAGCTCTGTCGCGAGGGTCCAGGCGCCGGGCTaGAGGGTCTCCTCCTTGGGGTCTGCGGTTTGCGACGCGGGCCCA | + |
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Preference number: 5 (lower is better) Translates to: LVLHWSSVARVQAPG*RVSSLGSAVCDAGP Trigger: TGGGCCCGCGTCGCAAACCGCAGACCCCAAGGAGGAGACCCTCCAGCCCGGCGCCTGGACCCTCGCGACAGAGCTCCAGTGTAGCACTAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149759.2 |
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| CDS-3UTR CAA 90 bp | TGGGAGCGAGTGGGCAGACCTCTGTGTCGGGGGAAGGCCACAGTCTTCTCCTTCCAACAAGGCCTGGGCTaGCCACCAAAAATCCACACC | + |
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Preference number: 5 (lower is better) Translates to: WERVGRPLCRGKATVFSFQQGLG*PPKIHT Trigger: GGTGTGGATTTTTGGTGGCAAGCCCAGGCCTTGTTG...GAAGGAGAAGACTGTGGCCTTCCCCCGACACAGAGGTCTGCCCACTCGCTCCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000144742.6 ENSMUST00000199617.2 |
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| CDS TCA 90 bp | TTGATTTCCTTAAGCCACATGAATTTCTGTCTTCTGCGCAGTGTCTaGGAGCCTACACTGGAGCTCTGTCGCGAGGGTCCAGGCGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: LISLSHMNFCLLRSV*EPTLELCREGPGAG Trigger: CCCGGCGCCTGGACCCTCGCGACAGAGCTCCAGTGTAGGCTCTCAGACACTGCGCAGAAGACAGAAATTCATGTGGCTTAAGGAAATCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000144742.6 ENSMUST00000199320.5 ENSMUST00000199617.2 |
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| CDS-3UTR CAA 90 bp | GGCCTGGGCTTGCCACCAAAAATCCACACCACGGCTGAACTTCTCACATATTTCTGGGCTACAGTGGACTaGGCCCTCTACACTGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: GLGLPPKIHTTAELLTYFWATVD*ALYTGA Trigger: AGCTCCAGTGTAGAGGGCCAAGTCCACTGTAGCCCA...GAAATATGTGAGAAGTTCAGCCGTGGTGTGGATTTTTGGTGGCAAGCCCAGGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000133316.8 |
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| CDS-3UTR CAA 90 bp | AAAAGATGCAAACAGAGCAGTAAGAGTGAAATAACCATACCATGGCAGGTATCGCAACAAGGCCTGGGCTaGCCACCAAAAATCCACACC | + |
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Preference number: 5 (lower is better) Translates to: KRCKQSSKSEITIPWQVSQQGLG*PPKIHT Trigger: GGTGTGGATTTTTGGTGGCAAGCCCAGGCCTTGTTG...CGATACCTGCCATGGTATGGTTATTTCACTCTTACTGCTCTGTTTGCATCTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000144742.6 ENSMUST00000199617.2 |
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