RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CEMIP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024754

Ensembl transcript IDs: ENSMUST00000025663.8, ENSMUST00000096194.9, ENSMUST00000237802.2

Found 377 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGCCTTTaGGCAGCACAGCAGCATTCTGATGCCATCTTCCCTCTTGGCTGC +
Preference number: 1 (lower is better)
Translates to: ALNCYRQPGYSATRL*AAQQHSDAIFPLGC
Trigger: GCAGCCAAGAGGGAAGATGGCATCAGAATGCTGCTGTGCTGCCCAAAGGCGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR TCA 90 bp CCCGATGTGCTTGTCAAAGCAAGGGCCACGAGACCAACTGCTCTCTaGACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTACCACCTGCA +
Preference number: 1 (lower is better)
Translates to: PDVLVKARATRPTAL*TQQPQEDKRALPPA
Trigger: TGCAGGTGGTAGAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGGCCCTTGCTTTGACAAGCACATCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR GCA 90 bp AAGCACCCCCGATGTGCTTGTCAAAGCAAGGGCCACGAGACCAACTaGTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTACC +
Preference number: 1 (lower is better)
Translates to: KHPRCACQSKGHETN*SLNAAASGRQKGST
Trigger: GGTAGAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGGCCCTTGCTTTGACAAGCACATCGGGGGTGCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR GCA 90 bp ACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTACCACCTGCACAGTaGCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCT +
Preference number: 1 (lower is better)
Translates to: TQQPQEDKRALPPAQ*QGLQADTQVTAWIP
Trigger: AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGGTGGTAGAGCCCTTTTGTCTTCCTGAGGCTGCTGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR TCA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTGCTCCTGGAGTGCTGTaGTCAAAGGCGTGCACCACC +
Preference number: 2 (lower is better)
Translates to: PLPHVSPLAEERASRSSTAPGVL*SKACTT
Trigger: GGTGGTGCACGCCTTTGATCACAGCACTCCAGGAGC...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR CCA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTAGTTCAAGGAGCCCTTaGACTCCCTGCACCCCACTA +
Preference number: 2 (lower is better)
Translates to: PLPHVSPLAEERASRSSTSSRSP*TPCTPL
Trigger: TAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACT...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR CCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGTGCCATCTTCCCTCTTaGCTGCAGAGCCAGCATCCT +
Preference number: 2 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPCHLPS*LQSQHP
Trigger: AGGATGCTGGCTCTGCAGCCAAGAGGGAAGATGGCA...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR TCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGAGCACAGCAGCATTCTaGTGCCATCTTCCCTCTTGG +
Preference number: 2 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPSTAAF*CHLPSW
Trigger: CCAAGAGGGAAGATGGCATCAGAATGCTGCTGTGCT...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR GCA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTGAAGATCATGTCCATTaGCTCCATGATTCCACCCTA +
Preference number: 2 (lower is better)
Translates to: PLPHVSPLAEERASRSSTEDHVH*LHDSTL
Trigger: TAGGGTGGAATCATGGAGGCAATGGACATGATCTTC...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR TCA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTTCCCTCTTTGAAAGGTaGACCCTCAAAAGTAATCAG +
Preference number: 2 (lower is better)
Translates to: PLPHVSPLAEERASRSSTSLFER*TLKSNQ
Trigger: CTGATTACTTTTGAGGGTTCACCTTTCAAAGAGGGA...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR TCA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGCCAAGGCCTGCAAGCTaGCACTCAGGTAACTGCTTG +
Preference number: 2 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRPRPAS*HSGNCL
Trigger: CAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGG...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR TCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGTGGACTTCAAGTATCTaGAATGCTAGAGCAGCCAGT +
Preference number: 2 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPWTSSI*NARAAS
Trigger: ACTGGCTGCTCTAGCATTTCAGATACTTGAAGTCCA...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR GCA 90 bp CATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATAAGCCCTTGGACTCCCTaGACCCCACTATACAAAAAG +
Preference number: 2 (lower is better)
Translates to: HDQAKRTCAGPELPLKTISPWTP*TPLYKK
Trigger: CTTTTTGTATAGTGGGGTGCAGGGAGTCCAAGGGCT...TATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR GCA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGCACCTGCTCCTGGAGTaGTGTGATCAAAGGCGTGCA +
Preference number: 2 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRHLLLE*CDQRRA
Trigger: TGCACGCCTTTGATCACAGCACTCCAGGAGCAGGTG...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR GCA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTGACAGGTTTCCCTTTTaGAAGTTAGCTTTTGTTGAC +
Preference number: 2 (lower is better)
Translates to: PLPHVSPLAEERASRSSTDRFPF*KLAFVD
Trigger: GTCAACAAAAGCTAACTTGCAAAAGGGAAACCTGTC...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR TCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTCCAAGGCCTGCAAGCTaGCACTCAGGTAACTGCTTG +
Preference number: 2 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPPRPAS*HSGNCL
Trigger: CAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGG...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR GCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTCACCTGCTCCTGGAGTaGTGTGATCAAAGGCGTGCA +
Preference number: 2 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPHLLLE*CDQRRA
Trigger: TGCACGCCTTTGATCACAGCACTCCAGGAGCAGGTG...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR CCA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTAGTTCAAGGAGCCCTTaGACTCCCTGCACCCCACTA +
Preference number: 2 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPSSRSP*TPCTPL
Trigger: TAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACT...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR GCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGAATTCAGTTCCGCTCTaGGTTTTAAAGGTCAAGACA +
Preference number: 2 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPNSVPL*VLKVKT
Trigger: TGTCTTGACCTTTAAAACGCAGAGCGGAACTGAATT...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR GCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTATCTTCCCTCTTGGCTaGAGAGCCAGCATCCTTTGC +
Preference number: 2 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPIFPLG*RASILC
Trigger: GCAAAGGATGCTGGCTCTGCAGCCAAGAGGGAAGAT...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR CCA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTTTACAGTTTAGGAAGTaGCTTGCTGCTTTTAAAGAA +
Preference number: 2 (lower is better)
Translates to: PLPHVSPLAEERASRSSTLQFRK*LAAFKE
Trigger: TTCTTTAAAAGCAGCAAGCCACTTCCTAAACTGTAA...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR GCA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGGTGCTGGGCCTGAGTTaGCACTTAAAACCATATCTA +
Preference number: 2 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRVLGLS*HLKPYL
Trigger: TAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCAC...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR CCA 90 bp AAAGAGCACATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTATATCAAACAGGAAAATaGTTCCATCGGGTTAACAGT +
Preference number: 2 (lower is better)
Translates to: KEHMTRQKGHVLGLSCHLYQTGK*FHRVNS
Trigger: ACTGTTAACCCGATGGAACCATTTTCCTGTTTGATA...TAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATGTGCTCTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR GCA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTGTGCTGGGCCTGAGTTaGCACTTAAAACCATATCTA +
Preference number: 2 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPVLGLS*HLKPYL
Trigger: TAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCAC...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR CCA 90 bp CATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATATCAAACAGGAAAATaGTTCCATCGGGTTAACAGT +
Preference number: 2 (lower is better)
Translates to: HDQAKRTCAGPELPLKTIYQTGK*FHRVNS
Trigger: ACTGTTAACCCGATGGAACCATTTTCCTGTTTGATA...TATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR CCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTAAGCGGGAAACTCTCTaGGATTTTCTGGTAGGACAA +
Preference number: 2 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPKRETL*DFLVGQ
Trigger: TTGTCCTACCAGAAAATCCCAGAGAGTTTCCCGCTT...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR TCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTTCCCTCTTTGAAAGGTaGACCCTCAAAAGTAATCAG +
Preference number: 2 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPSLFER*TLKSNQ
Trigger: CTGATTACTTTTGAGGGTTCACCTTTCAAAGAGGGA...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR TCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTATAAGGTTCCCTCTTTaGAAGGTGAACCCTCAAAAG +
Preference number: 2 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPIRFPL*KVNPQK
Trigger: CTTTTGAGGGTTCACCTTTCAAAGAGGGAACCTTAT...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR GCA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGAATTCAGTTCCGCTCTaGGTTTTAAAGGTCAAGACA +
Preference number: 2 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRNSVPL*VLKVKT
Trigger: TGTCTTGACCTTTAAAACGCAGAGCGGAACTGAATT...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR CCA 72 bp AGGCTAGCCTCAAACTCTCAGAGATCCACCTGCTCCTaGAGTGCTGTGATCAAAGGCGTGCACCACCACACC +
Preference number: 3 (lower is better)
Translates to: RLASNSQRSTCS*SAVIKGVHHHT
Trigger: GGTGTGGTGGTGCACGCCTTTGATCACAGCACTCCAGGAGCAGGTGGATCTCTGAGAGTTTGAGGCTAGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR GCA 72 bp CCTCAGGAAGACAAAAGGGCTCTACCACCTGCACAGTaGCAAGGCCTGCAAGCTGACACTCAGGTAACTGCT +
Preference number: 3 (lower is better)
Translates to: PQEDKRALPPAQ*QGLQADTQVTA
Trigger: AGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGGTGGTAGAGCCCTTTTGTCTTCCTGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR TCA 72 bp ATACAGGCATCAGCCTCGGCCCTCCACGGAGGAAGATaGACTTTTCTGCACTCAATTGCTACCGTCAGCCTG +
Preference number: 3 (lower is better)
Translates to: IQASASALHGGR*TFLHSIATVSL
Trigger: CAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATCTTCCTCCGTGGAGGGCCGAGGCTGATGCCTGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR GCA 72 bp CGATGTGCTTGTCAAAGCAAGGGCCACGAGACCAACTaGTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAG +
Preference number: 3 (lower is better)
Translates to: RCACQSKGHETN*SLNAAASGRQK
Trigger: CTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGGCCCTTGCTTTGACAAGCACATCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR CAA 90 bp CTGTACAGAAATGAGCCCCAGACATCACTGAACAGGGCAGCGACTGGAGTTAGCCACTCAGGTAACTGCTaGGATTCCTTCTCTCCCTTT +
Preference number: 3 (lower is better)
Translates to: LYRNEPQTSLNRAATGVSHSGNC*DSFSPF
Trigger: AAAGGGAGAGAAGGAATCCAAGCAGTTACCTGAGTG...GCTAACTCCAGTCGCTGCCCTGTTCAGTGATGTCTGGGGCTCATTTCTGTACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR CAA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTAAGTTCAAGGAGCCCTaGGACTCCCTGCACCCCACT +
Preference number: 3 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPKFKEP*DSLHPT
Trigger: AGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACTT...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR-3UTR CAA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTCACTCAGGTAACTGCTaGGATTCCTTCTCTCCCTTT +
Preference number: 3 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPHSGNC*DSFSPF
Trigger: AAAGGGAGAGAAGGAATCCAAGCAGTTACCTGAGTG...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR TCA 72 bp GCACCACCACACCTGGCTTTCTTTTGCAAGTTCAAATaGCAAGAGTTTTACAGTTTAGGAAGTGGCTTGCTG +
Preference number: 3 (lower is better)
Translates to: APPHLAFFCKFK*QEFYSLGSGLL
Trigger: CAGCAAGCCACTTCCTAAACTGTAAAACTCTTGTCATTTGAACTTGCAAAAGAAAGCCAGGTGTGGTGGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR GCA 72 bp CCCTCTTTTAAAGGCTACAAAGAAGATCATGTCCATTaGCTCCATGATTCCACCCTAAGAAGGCATCTCCTT +
Preference number: 3 (lower is better)
Translates to: PSFKGYKEDHVH*LHDSTLRRHLL
Trigger: AAGGAGATGCCTTCTTAGGGTGGAATCATGGAGGCAATGGACATGATCTTCTTTGTAGCCTTTAAAAGAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp ACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTACCACCTGCACAGTGCCAAGGCGTCGCTGGGGCGTCTTaGCTCCTGGAGGTCAGTTTG +
Preference number: 4 (lower is better)
Translates to: TQQPQEDKRALPPAQCQGVAGAS*LLEVSL
Trigger: CAAACTGACCTCCAGGAGCCAAGACGCCCCAGCGAC...GCCTTGGCACTGTGCAGGTGGTAGAGCCCTTTTGTCTTCCTGAGGCTGCTGCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTGGCTTCTCCAGGAGCTaGAGCCCACTGGACTCCCCA +
Preference number: 4 (lower is better)
Translates to: PLPHVSPLAEERASRSSTGFSRS*SPLDSP
Trigger: TGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCC...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CTGTACAGAAATGAGCCCCAGACATCACTGAACAGGGCAGCGACTGGAGTTAGCGGGCGTCTTGGCTCCTaGAGGTCAGTTTGGCGGAGG +
Preference number: 4 (lower is better)
Translates to: LYRNEPQTSLNRAATGVSGRLGS*RSVWRR
Trigger: CCTCCGCCAAACTGACCTCCAGGAGCCAAGACGCCC...GCTAACTCCAGTCGCTGCCCTGTTCAGTGATGTCTGGGGCTCATTTCTGTACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTGTCGCTGGGGCGTCTTaGCTCCTGGAGGTCAGTTTG +
Preference number: 4 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPVAGAS*LLEVSL
Trigger: CAAACTGACCTCCAGGAGCCAAGACGCCCCAGCGAC...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTCCCAAAGGGCAAGCCTaGAGAATGCAGAGTCCTCGC +
Preference number: 4 (lower is better)
Translates to: PLPHVSPLAEERASRSSTPKGQA*RMQSPR
Trigger: GCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGG...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp ACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTACCACCTGCACAGTGCCAAGGCACTCCTGCAGCCTCCTaGTCTCATTGTGGTACTCGT +
Preference number: 4 (lower is better)
Translates to: TQQPQEDKRALPPAQCQGTPAAS*SHCGTR
Trigger: ACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGT...GCCTTGGCACTGTGCAGGTGGTAGAGCCCTTTTGTCTTCCTGAGGCTGCTGCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CCACGAGACCAACTGCTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAGGGCTCCCTGTAACAGGCTCTTaGCTGCTGAGTCTCCAACAG +
Preference number: 4 (lower is better)
Translates to: PRDQLLSERSSLRKTKGLPVTGS*LLSLQQ
Trigger: CTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGG...GAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp ACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTACCACCTGCACAGTGCCAAGGCTATTCCAGCATCCTGTaGGCCTGCAGCTGCGTTATT +
Preference number: 4 (lower is better)
Translates to: TQQPQEDKRALPPAQCQGYSSIL*ACSCVI
Trigger: AATAACGCAGCTGCAGGCTCACAGGATGCTGGAATA...GCCTTGGCACTGTGCAGGTGGTAGAGCCCTTTTGTCTTCCTGAGGCTGCTGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp ACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTACCACCTGCACAGTGCCAAGGCGCCAGGAATTCTTCATaGGGAAGCCAATTGCACTGC +
Preference number: 4 (lower is better)
Translates to: TQQPQEDKRALPPAQCQGARNSS*GSQLHC
Trigger: GCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGC...GCCTTGGCACTGTGCAGGTGGTAGAGCCCTTTTGTCTTCCTGAGGCTGCTGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AAAGAGCACATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTATGCAGGCATCCACAATaGGGAGGAGGGCACCCGCAC +
Preference number: 4 (lower is better)
Translates to: KEHMTRQKGHVLGLSCHLCRHPQ*GGGHPH
Trigger: GTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCA...TAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATGTGCTCTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CCACGAGACCAACTGCTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAGGGCTCCGGCCCATATGCTGCTaGCCCATGTGTTTCAATTCC +
Preference number: 4 (lower is better)
Translates to: PRDQLLSERSSLRKTKGLRPICC*PMCFNS
Trigger: GGAATTGAAACACATGGGCCAGCAGCATATGGGCCG...GAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp ACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTACCACCTGCACAGTGCCAAGGCGCGTTATTGATCAGGTaGTTGTTGGGGTGGGCAATC +
Preference number: 4 (lower is better)
Translates to: TQQPQEDKRALPPAQCQGALLIR*LLGWAI
Trigger: GATTGCCCACCCCAACAACCACCTGATCAATAACGC...GCCTTGGCACTGTGCAGGTGGTAGAGCCCTTTTGTCTTCCTGAGGCTGCTGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGGGAGCTGCAGCCCACTaGACTCCCCAGTTGGTTCCT +
Preference number: 4 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPGAAAH*TPQLVP
Trigger: AGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCC...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTGGAAGCTCCCATCACTaGCAAAGGTCAGCCCCTTTC +
Preference number: 4 (lower is better)
Translates to: PLPHVSPLAEERASRSSTGSSHH*QRSAPF
Trigger: GAAAGGGGCTGACCTTTGCCAGTGATGGGAGCTTCC...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CCACGAGACCAACTGCTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAGGGCTCCTGAAAGCCTCGGATTaGGAATGTCCTGTTCCTGGG +
Preference number: 4 (lower is better)
Translates to: PRDQLLSERSSLRKTKGLLKASD*ECPVPG
Trigger: CCCAGGAACAGGACATTCCCAATCCGAGGCTTTCAG...GAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR CAA 72 bp CCCTCCACGGAGGAAGATGAACTTTTCTGCACTCAATaGCTACCGTCAGCCTGGCTATTCAGCCACCCGCCT +
Preference number: 4 (lower is better)
Translates to: PSTEEDELFCTQ*LPSAWLFSHPP
Trigger: AGGCGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATCTTCCTCCGTGGAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AAGGAGCAAGTTCAAGGAGCCCTTGGACTCCCTGCACCCCACTATACAAAAAGCGTCCACCCGGAAGCCTaGGAGGGAGATTCCTTGACT +
Preference number: 4 (lower is better)
Translates to: KEQVQGALGLPAPHYTKSVHPEA*EGDSLT
Trigger: AGTCAAGGAATCTCCCTCTCAGGCTTCCGGGTGGAC...GCTTTTTGTATAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACTTGCTCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCACTTGACAGAGCCCCGTaGGCATGGCCGGCATGCGCT +
Preference number: 4 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLALDRAP*AWPACA
Trigger: AGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAG...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp CCACGAGACCAACTGCTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAGGGCTCGATCGATTCCCCCTGTaGCCATGTACTTGTTTTGGC +
Preference number: 4 (lower is better)
Translates to: PRDQLLSERSSLRKTKGLDRFPL*PCTCFG
Trigger: GCCAAAACAAGTACATGGGCACAGGGGGAATCGATC...GAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CTGTACAGAAATGAGCCCCAGACATCACTGAACAGGGCAGCGACTGGAGTTAGCAGCGCCCCACCATCCTaGATCAGGATGTATCGAGTC +
Preference number: 4 (lower is better)
Translates to: LYRNEPQTSLNRAATGVSSAPPS*IRMYRV
Trigger: GACTCGATACATCCTGATCCAGGATGGTGGGGCGCT...GCTAACTCCAGTCGCTGCCCTGTTCAGTGATGTCTGGGGCTCATTTCTGTACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CCACGAGACCAACTGCTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTCCTCCATCTCTCCTTaGATCACAATGTTGCGGGTG +
Preference number: 4 (lower is better)
Translates to: PRDQLLSERSSLRKTKGLSSISP*ITMLRV
Trigger: CACCCGCAACATTGTGATCCAAGGAGAGATGGAGGA...GAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGTGGCCGTTTCCGTTTTaGGGTTGCAGGAAAGCAGGG +
Preference number: 4 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPWPFPF*GCRKAG
Trigger: CCCTGCTTTCCTGCAACCTCAAAACGGAAACGGCCA...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AAGGAGCAAGTTCAAGGAGCCCTTGGACTCCCTGCACCCCACTATACAAAAAGCTGGCCGTTTCCGTTTTaGGGTTGCAGGAAAGCAGGG +
Preference number: 4 (lower is better)
Translates to: KEQVQGALGLPAPHYTKSWPFPF*GCRKAG
Trigger: CCCTGCTTTCCTGCAACCTCAAAACGGAAACGGCCA...GCTTTTTGTATAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACTTGCTCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp ACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTACCACCTGCACAGTGCCAAGGCCTGAGACGAGGGTTTTaGTCTGGACAATTCTCATCT +
Preference number: 4 (lower is better)
Translates to: TQQPQEDKRALPPAQCQGLRRGF*SGQFSS
Trigger: AGATGAGAATTGTCCAGATCAAAACCCTCGTCTCAG...GCCTTGGCACTGTGCAGGTGGTAGAGCCCTTTTGTCTTCCTGAGGCTGCTGCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CTGTACAGAAATGAGCCCCAGACATCACTGAACAGGGCAGCGACTGGAGTTAGCTTTTCTGCTCCAATATaGAGCGCCCCACCATCCTGG +
Preference number: 4 (lower is better)
Translates to: LYRNEPQTSLNRAATGVSFSAPI*SAPPSW
Trigger: CCAGGATGGTGGGGCGCTTCATATTGGAGCAGAAAA...GCTAACTCCAGTCGCTGCCCTGTTCAGTGATGTCTGGGGCTCATTTCTGTACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTAACTTCCACCATCGATaGCACCAACTAAGGCCCAAG +
Preference number: 4 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPNFHHR*HQLRPK
Trigger: CTTGGGCCTTAGTTGGTGTCATCGATGGTGGAAGTT...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTAACTTCCACCATCGATaGCACCAACTAAGGCCCAAG +
Preference number: 4 (lower is better)
Translates to: PLPHVSPLAEERASRSSTNFHHR*HQLRPK
Trigger: CTTGGGCCTTAGTTGGTGTCATCGATGGTGGAAGTT...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGCAGCTTCCCAAGTGCTaGCGTCGTCCAACAGGTGAA +
Preference number: 4 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPQLPKC*RRPTGE
Trigger: TTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTG...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CTGTACAGAAATGAGCCCCAGACATCACTGAACAGGGCAGCGACTGGAGTTAGCTCACAATGTTGCGGGTaGGAAGTCCAACCTCAGCTC +
Preference number: 4 (lower is better)
Translates to: LYRNEPQTSLNRAATGVSSQCCG*EVQPQL
Trigger: GAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGA...GCTAACTCCAGTCGCTGCCCTGTTCAGTGATGTCTGGGGCTCATTTCTGTACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTGCCAGGAATTCTTCATaGGGAAGCCAATTGCACTGC +
Preference number: 4 (lower is better)
Translates to: PLPHVSPLAEERASRSSTARNSS*GSQLHC
Trigger: GCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGC...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGAGCCCTTCTCCAGCATaGCAACAGGCTGGTACTGTG +
Preference number: 4 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPSPSPA*QQAGTV
Trigger: CACAGTACCAGCCTGTTGTCATGCTGGAGAAGGGCT...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CCACGAGACCAACTGCTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTTGCTGCCTGAATCTTaGCTCTTTCACATCCCTGAG +
Preference number: 4 (lower is better)
Translates to: PRDQLLSERSSLRKTKGLLLPES*LFHIPE
Trigger: CTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAA...GAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTGATGGATCTCCTCGCTaGATTTCTGCTTTCCCAGGT +
Preference number: 4 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPDGSPR*ISAFPG
Trigger: ACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATC...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp CCACGAGACCAACTGCTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAGGGCTCATAGCGGCATTTTTCTaGTCCAATATGAAGCGCCCC +
Preference number: 4 (lower is better)
Translates to: PRDQLLSERSSLRKTKGLIAAFF*SNMKRP
Trigger: GGGGCGCTTCATATTGGAGCAGAAAAATGCCGCTAT...GAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTGCTCTCAAAAACTCCTaGAGCCTCCTGCTCTCATTG +
Preference number: 4 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPALKNS*SLLLSL
Trigger: CAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGC...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTCATGAGGAAGCCAATTaGACTGCTGTACCTGTCTGG +
Preference number: 4 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPHEEAN*TAVPVW
Trigger: CCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATG...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGCTGTGGCCATCTCTGTaGCTGTGGGCTCTGAGATAC +
Preference number: 4 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPLWPSL*LWALRY
Trigger: GTATCTCAGAGCCCACAGCCACAGAGATGGCCACAG...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGCCTGTAACAGGCTCTTaGCTGCTGAGTCTCCAACAG +
Preference number: 4 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPPVTGS*LLSLQQ
Trigger: CTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGG...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTCACGGTGATGCACCTTaGAAAGCTGTGATGAACAGA +
Preference number: 4 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPHGDAP*KAVMNR
Trigger: TCTGTTCATCACAGCTTTTCAAGGTGCATCACCGTG...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AAAGAGCACATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAGACTCTGTCACCTCCTaGCTGGACCCTTCATCGCTT +
Preference number: 4 (lower is better)
Translates to: KEHMTRQKGHVLGLSCHLDSVTS*LDPSSL
Trigger: AAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTC...TAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATGTGCTCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AAAGAGCACATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAGCCCTTCTCCAGCATaGCAACAGGCTGGTACTGTG +
Preference number: 4 (lower is better)
Translates to: KEHMTRQKGHVLGLSCHLSPSPA*QQAGTV
Trigger: CACAGTACCAGCCTGTTGTCATGCTGGAGAAGGGCT...TAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATGTGCTCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTTGTGGCTGTGGGCTCTaGGATACAGAAACAATAACC +
Preference number: 4 (lower is better)
Translates to: PLPHVSPLAEERASRSSTCGCGL*DTETIT
Trigger: GGTTATTGTTTCTGTATCTCAGAGCCCACAGCCACA...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CCACGAGACCAACTGCTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAGGGCTCGAGTCTGTTGCTGCCTaGATCTTGACTCTTTCACAT +
Preference number: 4 (lower is better)
Translates to: PRDQLLSERSSLRKTKGLESVAA*ILTLSH
Trigger: ATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTC...GAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTCTTGACAGAGCCCCGTaGGCATGGCCGGCATGCGCT +
Preference number: 4 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPLDRAP*AWPACA
Trigger: AGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAG...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CTGTACAGAAATGAGCCCCAGACATCACTGAACAGGGCAGCGACTGGAGTTAGCGATGGATCTCCTCGCTaGATTTCTGCTTTCCCAGGT +
Preference number: 4 (lower is better)
Translates to: LYRNEPQTSLNRAATGVSDGSPR*ISAFPG
Trigger: ACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATC...GCTAACTCCAGTCGCTGCCCTGTTCAGTGATGTCTGGGGCTCATTTCTGTACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp AAGGAGCAAGTTCAAGGAGCCCTTGGACTCCCTGCACCCCACTATACAAAAAGCACTCCTGCAGCCTCCTaGTCTCATTGTGGTACTCGT +
Preference number: 4 (lower is better)
Translates to: KEQVQGALGLPAPHYTKSTPAAS*SHCGTR
Trigger: ACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGT...GCTTTTTGTATAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACTTGCTCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp CTGTACAGAAATGAGCCCCAGACATCACTGAACAGGGCAGCGACTGGAGTTAGCTACCGGCCCATATGCTaGTGGCCCATGTGTTTCAAT +
Preference number: 4 (lower is better)
Translates to: LYRNEPQTSLNRAATGVSYRPIC*WPMCFN
Trigger: ATTGAAACACATGGGCCAGCAGCATATGGGCCGGTA...GCTAACTCCAGTCGCTGCCCTGTTCAGTGATGTCTGGGGCTCATTTCTGTACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp AAAGAGCACATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAGCCACTGGTCCCGTaGACGGTGATGCACCTTGAA +
Preference number: 4 (lower is better)
Translates to: KEHMTRQKGHVLGLSCHLKPLVP*TVMHLE
Trigger: TTCAAGGTGCATCACCGTGCACGGGACCAGTGGCTT...TAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATGTGCTCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGATGGGGCCGAAACCTTaGACTGTTATCCAGGCAGAG +
Preference number: 4 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPMGPKP*TVIQAE
Trigger: CTCTGCCTGGATAACAGTGCAAGGTTTCGGCCCCAT...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGGATAATGAGCCGTTCTaGCGCTGCAGAAAGCCAACG +
Preference number: 4 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPDNEPF*RCRKPT
Trigger: CGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATC...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGAGGAAAGCAGGGGAGTaGCCCCTGGAACCAGCGGCA +
Preference number: 4 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRRKAGE*PLEPAA
Trigger: TGCCGCTGGTTCCAGGGGCCACTCCCCTGCTTTCCT...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTCGATCCTGGATCATCTaGATTGTTCCCTGTAACAGG +
Preference number: 4 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPRSWII*IVPCNR
Trigger: CCTGTTACAGGGAACAATCCAGATGATCCAGGATCG...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTCGATCCTGGATCATCTaGATTGTTCCCTGTAACAGG +
Preference number: 4 (lower is better)
Translates to: PLPHVSPLAEERASRSSTRSWII*IVPCNR
Trigger: CCTGTTACAGGGAACAATCCAGATGATCCAGGATCG...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp AAGGAGCAAGTTCAAGGAGCCCTTGGACTCCCTGCACCCCACTATACAAAAAGCCCTCTGCTTGGTACATaGAATAGTCGGTGCTGGCCA +
Preference number: 4 (lower is better)
Translates to: KEQVQGALGLPAPHYTKSPLLGT*NSRCWP
Trigger: TGGCCAGCACCGACTATTCCATGTACCAAGCAGAGG...GCTTTTTGTATAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACTTGCTCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATAGCCATCCACAGACGCTaGCTGGCTGTACCCTCCTTT +
Preference number: 4 (lower is better)
Translates to: HDQAKRTCAGPELPLKTIAIHRR*LAVPSF
Trigger: AAAGGAGGGTACAGCCAGCCAGCGTCTGTGGATGGC...TATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CTGTACAGAAATGAGCCCCAGACATCACTGAACAGGGCAGCGACTGGAGTTAGCGCGTTATTGATCAGGTaGTTGTTGGGGTGGGCAATC +
Preference number: 4 (lower is better)
Translates to: LYRNEPQTSLNRAATGVSALLIR*LLGWAI
Trigger: GATTGCCCACCCCAACAACCACCTGATCAATAACGC...GCTAACTCCAGTCGCTGCCCTGTTCAGTGATGTCTGGGGCTCATTTCTGTACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATACAGCGGAGTGAGTTCTaGCTTCTCCAGGAGCTGCAG +
Preference number: 4 (lower is better)
Translates to: HDQAKRTCAGPELPLKTIQRSEF*LLQELQ
Trigger: CTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTG...TATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCAGTCCACCCGGAAGCCTaGGAGGGAGATTCCTTGACT +
Preference number: 4 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLAVHPEA*EGDSLT
Trigger: AGTCAAGGAATCTCCCTCTCAGGCTTCCGGGTGGAC...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTAATTCTTCTCTATCATaGCGTGTCCCCCAAAGGTGT +
Preference number: 4 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPNSSLS*RVPQRC
Trigger: ACACCTTTGGGGGACACGTCATGATAGAGAAGAATT...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTTCCAAAAAGAAGCAATaGCCTAGTGTGTCGAAGCCA +
Preference number: 4 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPSKKKQ*PSVSKP
Trigger: TGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGA...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATAATATCCCCAGCGGAGTaGGTTCTGGCTTCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: HDQAKRTCAGPELPLKTIISPAE*VLASPG
Trigger: TCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATAT...TATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATAGACTCTGTCACCTCCTaGCTGGACCCTTCATCGCTT +
Preference number: 4 (lower is better)
Translates to: HDQAKRTCAGPELPLKTIDSVTS*LDPSSL
Trigger: AAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTC...TATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp CATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATAGGCAAGCCTGAAGAATaGAGAGTCCTCGCCAGCATC +
Preference number: 4 (lower is better)
Translates to: HDQAKRTCAGPELPLKTIGKPEE*RVLASI
Trigger: GATGCTGGCGAGGACTCTGCATTCTTCAGGCTTGCC...TATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTGGCTTCTCCAGGAGCTaGAGCCCACTGGACTCCCCA +
Preference number: 4 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPGFSRS*SPLDSP
Trigger: TGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCC...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp AAGGAGCAAGTTCAAGGAGCCCTTGGACTCCCTGCACCCCACTATACAAAAAGCGATCGATTCCCCCTGTaGCCATGTACTTGTTTTGGC +
Preference number: 4 (lower is better)
Translates to: KEQVQGALGLPAPHYTKSDRFPL*PCTCFG
Trigger: GCCAAAACAAGTACATGGGCACAGGGGGAATCGATC...GCTTTTTGTATAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACTTGCTCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp AAGGAGCAAGTTCAAGGAGCCCTTGGACTCCCTGCACCCCACTATACAAAAAGCCATGAGGAAGCCAATTaGACTGCTGTACCTGTCTGG +
Preference number: 4 (lower is better)
Translates to: KEQVQGALGLPAPHYTKSHEEAN*TAVPVW
Trigger: CCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATG...GCTTTTTGTATAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACTTGCTCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTAGGAAAGCAGGGGAGTaGCCCCTGGAACCAGCGGCA +
Preference number: 4 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPRKAGE*PLEPAA
Trigger: TGCCGCTGGTTCCAGGGGCCACTCCCCTGCTTTCCT...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp AAGGAGCAAGTTCAAGGAGCCCTTGGACTCCCTGCACCCCACTATACAAAAAGCCTCCTGCTCTCATTGTaGTACTCGTGGGTATCGAAC +
Preference number: 4 (lower is better)
Translates to: KEQVQGALGLPAPHYTKSLLLSL*YSWVSN
Trigger: GTTCGATACCCACGAGTACCACAATGAGAGCAGGAG...GCTTTTTGTATAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACTTGCTCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CTGTACAGAAATGAGCCCCAGACATCACTGAACAGGGCAGCGACTGGAGTTAGCGGGAAACGTTATTCCTaGGTGTTGTCTGCCAGGAAT +
Preference number: 4 (lower is better)
Translates to: LYRNEPQTSLNRAATGVSGKRYS*VLSARN
Trigger: ATTCCTGGCAGACAACACCCAGGAATAACGTTTCCC...GCTAACTCCAGTCGCTGCCCTGTTCAGTGATGTCTGGGGCTCATTTCTGTACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CCACGAGACCAACTGCTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAGGGCTCGAGCCATCAATGTCATaGAAGATGGAGTTCTTATCG +
Preference number: 4 (lower is better)
Translates to: PRDQLLSERSSLRKTKGLEPSMS*KMEFLS
Trigger: CGATAAGAACTCCATCTTCCATGACATTGATGGCTC...GAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATAAGTGGTTCGTGGCGCTaGACCATTCCAGTGGATGGT +
Preference number: 4 (lower is better)
Translates to: HDQAKRTCAGPELPLKTISGSWR*TIPVDG
Trigger: ACCATCCACTGGAATGGTCCAGCGCCACGAACCACT...TATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGCCCAAAGGGCAAGCCTaGAGAATGCAGAGTCCTCGC +
Preference number: 4 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRPKGQA*RMQSPR
Trigger: GCGAGGACTCTGCATTCTTCAGGCTTGCCCTTTGGG...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGTGTGGCTGTGGGCTCTaGGATACAGAAACAATAACC +
Preference number: 4 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPCGCGL*DTETIT
Trigger: GGTTATTGTTTCTGTATCTCAGAGCCCACAGCCACA...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AAGGAGCAAGTTCAAGGAGCCCTTGGACTCCCTGCACCCCACTATACAAAAAGCTTGCTGCCTGAATCTTaGCTCTTTCACATCCCTGAG +
Preference number: 4 (lower is better)
Translates to: KEQVQGALGLPAPHYTKSLLPES*LFHIPE
Trigger: CTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAA...GCTTTTTGTATAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACTTGCTCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTAAATATTCTTCCATGTaGCTGACGTCTGCAGAAAGG +
Preference number: 4 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPKYSSM*LTSAER
Trigger: CCTTTCTGCAGACGTCAGTCACATGGAAGAATATTT...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGATAGCGGCATTTTTCTaGTCCAATATGAAGCGCCCC +
Preference number: 4 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPIAAFF*SNMKRP
Trigger: GGGGCGCTTCATATTGGAGCAGAAAAATGCCGCTAT...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp AAAGAGCACATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAGGAAGCCAATTGCACTaGTGTACCTGTCTGGAGTTG +
Preference number: 4 (lower is better)
Translates to: KEHMTRQKGHVLGLSCHLGSQLH*CTCLEL
Trigger: CAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCC...TAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATGTGCTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp CTGTACAGAAATGAGCCCCAGACATCACTGAACAGGGCAGCGACTGGAGTTAGCATACGACACTACCTTTaGTGTACAGATGTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: LYRNEPQTSLNRAATGVSIRHYL*CTDVLA
Trigger: AGCCAGCACATCTGTACAGCAAAGGTAGTGTCGTAT...GCTAACTCCAGTCGCTGCCCTGTTCAGTGATGTCTGGGGCTCATTTCTGTACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCAAGCGCCCCACCATCCTaGATCAGGATGTATCGAGTC +
Preference number: 4 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLASAPPS*IRMYRV
Trigger: GACTCGATACATCCTGATCCAGGATGGTGGGGCGCT...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATACCTCTGCTTGGTACATaGAATAGTCGGTGCTGGCCA +
Preference number: 4 (lower is better)
Translates to: HDQAKRTCAGPELPLKTIPLLGT*NSRCWP
Trigger: TGGCCAGCACCGACTATTCCATGTACCAAGCAGAGG...TATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATACGGCCCATATGCTGCTaGCCCATGTGTTTCAATTCC +
Preference number: 4 (lower is better)
Translates to: HDQAKRTCAGPELPLKTIRPICC*PMCFNS
Trigger: GGAATTGAAACACATGGGCCAGCAGCATATGGGCCG...TATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTGGAGCTGCAGCCCACTaGACTCCCCAGTTGGTTCCT +
Preference number: 4 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPGAAAH*TPQLVP
Trigger: AGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCC...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCAGGAAGCTCCCATCACTaGCAAAGGTCAGCCCCTTTC +
Preference number: 4 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLAGSSHH*QRSAPF
Trigger: GAAAGGGGCTGACCTTTGCCAGTGATGGGAGCTTCC...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AAAGAGCACATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTATTATGGCGAAGCAGATaGAGGTGTTCTTGTGCCTCT +
Preference number: 4 (lower is better)
Translates to: KEHMTRQKGHVLGLSCHLLWRSR*RCSCAS
Trigger: AGAGGCACAAGAACACCTTCATCTGCTTCGCCATAA...TAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATGTGCTCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AAGGAGCAAGTTCAAGGAGCCCTTGGACTCCCTGCACCCCACTATACAAAAAGCCTGAGACGAGGGTTTTaGTCTGGACAATTCTCATCT +
Preference number: 4 (lower is better)
Translates to: KEQVQGALGLPAPHYTKSLRRGF*SGQFSS
Trigger: AGATGAGAATTGTCCAGATCAAAACCCTCGTCTCAG...GCTTTTTGTATAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACTTGCTCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AAAGAGCACATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAGCAGTCCTCCATCCTaGATGACTATAGAGTCCACT +
Preference number: 4 (lower is better)
Translates to: KEHMTRQKGHVLGLSCHLSSPPS*MTIEST
Trigger: AGTGGACTCTATAGTCATTCAGGATGGAGGACTGCT...TAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATGTGCTCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGCAGCTTCCCAAGTGCTaGCGTCGTCCAACAGGTGAA +
Preference number: 4 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRQLPKC*RRPTGE
Trigger: TTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTG...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CTGTACAGAAATGAGCCCCAGACATCACTGAACAGGGCAGCGACTGGAGTTAGCATTTTCTGCATAGCATaGATCCTCCATCTCTCCTTG +
Preference number: 4 (lower is better)
Translates to: LYRNEPQTSLNRAATGVSIFCIA*ILHLSL
Trigger: CAAGGAGAGATGGAGGATTCATGCTATGCAGAAAAT...GCTAACTCCAGTCGCTGCCCTGTTCAGTGATGTCTGGGGCTCATTTCTGTACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGAATTCTTCTCTATCATaGCGTGTCCCCCAAAGGTGT +
Preference number: 4 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPNSSLS*RVPQRC
Trigger: ACACCTTTGGGGGACACGTCATGATAGAGAAGAATT...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AAAGAGCACATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTACACGGTGATGCACCTTaGAAAGCTGTGATGAACAGA +
Preference number: 4 (lower is better)
Translates to: KEHMTRQKGHVLGLSCHLHGDAP*KAVMNR
Trigger: TCTGTTCATCACAGCTTTTCAAGGTGCATCACCGTG...TAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATGTGCTCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGATATCCCCAGCGGAGTaGGTTCTGGCTTCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRISPAE*VLASPG
Trigger: TCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATAT...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AAGGAGCAAGTTCAAGGAGCCCTTGGACTCCCTGCACCCCACTATACAAAAAGCGAGTCTGTTGCTGCCTaGATCTTGACTCTTTCACAT +
Preference number: 4 (lower is better)
Translates to: KEQVQGALGLPAPHYTKSESVAA*ILTLSH
Trigger: ATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTC...GCTTTTTGTATAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACTTGCTCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTTCCTTGATAACAATGTaGTTCGCAGAATCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: PLPHVSPLAEERASRSSTSLITM*FAESCP
Trigger: AGGACAAGATTCTGCGAAGCACATTGTTATCAAGGA...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTTTCTCACAGATTCATTaGAGGAAGAACTTCCACCAT +
Preference number: 4 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPFSQIH*RKNFHH
Trigger: ATGGTGGAAGTTCTTCCTGCAATGAATCTGTGAGAA...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGAAGCCACTGGTCCCGTaGACGGTGATGCACCTTGAA +
Preference number: 4 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRKPLVP*TVMHLE
Trigger: TTCAAGGTGCATCACCGTGCACGGGACCAGTGGCTT...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp CTGTACAGAAATGAGCCCCAGACATCACTGAACAGGGCAGCGACTGGAGTTAGCCCCGCTACAGATCACTaGATTCCACTTAGTAACATT +
Preference number: 4 (lower is better)
Translates to: LYRNEPQTSLNRAATGVSPATDH*IPLSNI
Trigger: AATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGG...GCTAACTCCAGTCGCTGCCCTGTTCAGTGATGTCTGGGGCTCATTTCTGTACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CCACGAGACCAACTGCTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAGGGCTCCTTCTTGCCAAATATTaGCATACTTTCACGTTCATC +
Preference number: 4 (lower is better)
Translates to: PRDQLLSERSSLRKTKGLLLAKY*HTFTFI
Trigger: GATGAACGTGAAAGTATGCCAATATTTGGCAAGAAG...GAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCACTCCCCAACCGATCCTaGATCATCTGGATTGTTCCC +
Preference number: 4 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLALPNRS*IIWIVP
Trigger: GGGAACAATCCAGATGATCCAGGATCGGTTGGGGAG...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTGCCATCCACAGACGCTaGCTGGCTGTACCCTCCTTT +
Preference number: 4 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPAIHRR*LAVPSF
Trigger: AAAGGAGGGTACAGCCAGCCAGCGTCTGTGGATGGC...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTCAGCGGAGTGAGTTCTaGCTTCTCCAGGAGCTGCAG +
Preference number: 4 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPQRSEF*LLQELQ
Trigger: CTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTG...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTGTACCTGTCTGGAGTTaGCACATACTTTTTGAAAGT +
Preference number: 4 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPVPVWS*HILFES
Trigger: ACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTAC...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp AAAGAGCACATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAGGGAAACGTTATTCCTaGGTGTTGTCTGCCAGGAAT +
Preference number: 4 (lower is better)
Translates to: KEHMTRQKGHVLGLSCHLGKRYS*VLSARN
Trigger: ATTCCTGGCAGACAACACCCAGGAATAACGTTTCCC...TAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATGTGCTCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp AAGGAGCAAGTTCAAGGAGCCCTTGGACTCCCTGCACCCCACTATACAAAAAGCCAATGTCATGGAAGATaGAGTTCTTATCGCCGTCCA +
Preference number: 4 (lower is better)
Translates to: KEQVQGALGLPAPHYTKSQCHGR*SSYRRP
Trigger: TGGACGGCGATAAGAACTCCATCTTCCATGACATTG...GCTTTTTGTATAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACTTGCTCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGCAATGTCATGGAAGATaGAGTTCTTATCGCCGTCCA +
Preference number: 4 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPQCHGR*SSYRRP
Trigger: TGGACGGCGATAAGAACTCCATCTTCCATGACATTG...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CTGTACAGAAATGAGCCCCAGACATCACTGAACAGGGCAGCGACTGGAGTTAGCACTTTCACGTTCATCTaGCTTGCCATACAAGGTAAT +
Preference number: 4 (lower is better)
Translates to: LYRNEPQTSLNRAATGVSTFTFI*LAIQGN
Trigger: ATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGT...GCTAACTCCAGTCGCTGCCCTGTTCAGTGATGTCTGGGGCTCATTTCTGTACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGTCACAATGTTGCGGGTaGGAAGTCCAACCTCAGCTC +
Preference number: 4 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRSQCCG*EVQPQL
Trigger: GAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGA...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGATTTTCTGCATAGCATaGATCCTCCATCTCTCCTTG +
Preference number: 4 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPIFCIA*ILHLSL
Trigger: CAAGGAGAGATGGAGGATTCATGCTATGCAGAAAAT...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTAGAAGCCCCAAGTTATaGTACAAAATATTTCGCTGT +
Preference number: 4 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPRSPKL*YKIFRC
Trigger: ACAGCGAAATATTTTGTATCATAACTTGGGGCTTCT...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCAGCTCTCAAAAACTCCTaGAGCCTCCTGCTCTCATTG +
Preference number: 4 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLAALKNS*SLLLSL
Trigger: CAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGC...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCATACCGGCCCATATGCTaGTGGCCCATGTGTTTCAAT +
Preference number: 4 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLAYRPIC*WPMCFN
Trigger: ATTGAAACACATGGGCCAGCAGCATATGGGCCGGTA...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTTCCTGGAGGTCAGTTTaGCGGAGGCGTGGTTCTTTG +
Preference number: 4 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPSWRSV*RRRGSL
Trigger: CAAAGAACCACGCCTCCGCCAAACTGACCTCCAGGA...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTTCCTGGAGGTCAGTTTaGCGGAGGCGTGGTTCTTTG +
Preference number: 4 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPSWRSV*RRRGSL
Trigger: CAAAGAACCACGCCTCCGCCAAACTGACCTCCAGGA...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCACTCCTGCTCTCATTGTaGTACTCGTGGGTATCGAAC +
Preference number: 4 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLALLLSL*YSWVSN
Trigger: GTTCGATACCCACGAGTACCACAATGAGAGCAGGAG...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCATCCTCCATCTCTCCTTaGATCACAATGTTGCGGGTG +
Preference number: 4 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLASSISP*ITMLRV
Trigger: CACCCGCAACATTGTGATCCAAGGAGAGATGGAGGA...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTCCAGTTGGTTCCTTGTaGAATAAATACCATATTCCA +
Preference number: 4 (lower is better)
Translates to: PLPHVSPLAEERASRSSTPVGSL*NKYHIP
Trigger: TGGAATATGGTATTTATTCCACAAGGAACCAACTGG...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTCCAGTTGGTTCCTTGTaGAATAAATACCATATTCCA +
Preference number: 4 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPPVGSL*NKYHIP
Trigger: TGGAATATGGTATTTATTCCACAAGGAACCAACTGG...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGCTGAAAGCCTCGGATTaGGAATGTCCTGTTCCTGGG +
Preference number: 4 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRLKASD*ECPVPG
Trigger: CCCAGGAACAGGACATTCCCAATCCGAGGCTTTCAG...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGACTGCTGTACCTGTCTaGAGTTGGCACATACTTTTT +
Preference number: 4 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPTAVPV*SWHILF
Trigger: AAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGT...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGGAGCCATCAATGTCATaGAAGATGGAGTTCTTATCG +
Preference number: 4 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPEPSMS*KMEFLS
Trigger: CGATAAGAACTCCATCTTCCATGACATTGATGGCTC...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTAGTGGTTCGTGGCGCTaGACCATTCCAGTGGATGGT +
Preference number: 4 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPSGSWR*TIPVDG
Trigger: ACCATCCACTGGAATGGTCCAGCGCCACGAACCACT...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTCTGTGGCCATCTCTGTaGCTGTGGGCTCTGAGATAC +
Preference number: 4 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPLWPSL*LWALRY
Trigger: GTATCTCAGAGCCCACAGCCACAGAGATGGCCACAG...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCATTATGGCGAAGCAGATaGAGGTGTTCTTGTGCCTCT +
Preference number: 4 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLALWRSR*RCSCAS
Trigger: AGAGGCACAAGAACACCTTCATCTGCTTCGCCATAA...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp AAGGAGCAAGTTCAAGGAGCCCTTGGACTCCCTGCACCCCACTATACAAAAAGCTCCTTGATAACAATGTaGTTCGCAGAATCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: KEQVQGALGLPAPHYTKSSLITM*FAESCP
Trigger: AGGACAAGATTCTGCGAAGCACATTGTTATCAAGGA...GCTTTTTGTATAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACTTGCTCCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTGATAATGAGCCGTTCTaGCGCTGCAGAAAGCCAACG +
Preference number: 4 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPDNEPF*RCRKPT
Trigger: CGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATC...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp CATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATAATACGACACTACCTTTaGTGTACAGATGTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: HDQAKRTCAGPELPLKTIIRHYL*CTDVLA
Trigger: AGCCAGCACATCTGTACAGCAAAGGTAGTGTCGTAT...TATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCAAGGTGGTTGTTGGGGTaGGCAATCCAGAAAGTTGAA +
Preference number: 4 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLARWLLG*AIQKVE
Trigger: TTCAACTTTCTGGATTGCCCACCCCAACAACCACCT...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp AAGGAGCAAGTTCAAGGAGCCCTTGGACTCCCTGCACCCCACTATACAAAAAGCGTACCTGTCTGGAGTTaGCACATACTTTTTGAAAGT +
Preference number: 4 (lower is better)
Translates to: KEQVQGALGLPAPHYTKSVPVWS*HILFES
Trigger: ACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTAC...GCTTTTTGTATAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACTTGCTCCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp AAAGAGCACATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAACTGCTGTACCTGTCTaGAGTTGGCACATACTTTTT +
Preference number: 4 (lower is better)
Translates to: KEHMTRQKGHVLGLSCHLTAVPV*SWHILF
Trigger: AAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGT...TAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATGTGCTCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
3UTR CAA 72 bp ACGTGCCCATCCTGTGAGCACTACAGTCCAAATGGTTaGTCACAGCACTTTGAGGTAGCATGTTCTGTAAAG +
Preference number: 4 (lower is better)
Translates to: TCPSCEHYSPNG*SQHFEVACSVK
Trigger: CTTTACAGAACATGCTACCTCAAAGTGCTGTGACAAACCATTTGGACTGTAGTGCTCACAGGATGGGCACGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGAGCAGTCCTCCATCCTaGATGACTATAGAGTCCACT +
Preference number: 4 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRSSPPS*MTIEST
Trigger: AGTGGACTCTATAGTCATTCAGGATGGAGGACTGCT...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTTATTCCAGCATCCTGTaGGCCTGCAGCTGCGTTATT +
Preference number: 4 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPYSSIL*ACSCVI
Trigger: AATAACGCAGCTGCAGGCTCACAGGATGCTGGAATA...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTGGAAGCCAATTGCACTaGTGTACCTGTCTGGAGTTG +
Preference number: 4 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPGSQLH*CTCLEL
Trigger: CAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCC...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTAGGTGGTTGTTGGGGTaGGCAATCCAGAAAGTTGAA +
Preference number: 4 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPRWLLG*AIQKVE
Trigger: TTCAACTTTCTGGATTGCCCACCCCAACAACCACCT...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTTCCAAAAAGAAGCAATaGCCTAGTGTGTCGAAGCCA +
Preference number: 4 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPSKKKQ*PSVSKP
Trigger: TGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGA...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTATTCTTCCATGTGACTaGCGTCTGCAGAAAGGAACA +
Preference number: 4 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPILPCD*RLQKGT
Trigger: TGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAAT...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp CATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATACTTCTTGCCAAATATTaGCATACTTTCACGTTCATC +
Preference number: 4 (lower is better)
Translates to: HDQAKRTCAGPELPLKTILLAKY*HTFTFI
Trigger: GATGAACGTGAAAGTATGCCAATATTTGGCAAGAAG...TATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTAAATATTCTTCCATGTaGCTGACGTCTGCAGAAAGG +
Preference number: 4 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPKYSSM*LTSAER
Trigger: CCTTTCTGCAGACGTCAGTCACATGGAAGAATATTT...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGTTCTCACAGATTCATTaGAGGAAGAACTTCCACCAT +
Preference number: 4 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRFSQIH*RKNFHH
Trigger: ATGGTGGAAGTTCTTCCTGCAATGAATCTGTGAGAA...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTCCCGCTACAGATCACTaGATTCCACTTAGTAACATT +
Preference number: 4 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPPATDH*IPLSNI
Trigger: AATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGG...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTAACATTGACACAGTTTaGATGGCGGATCAGGTAGTT +
Preference number: 4 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPNIDTV*MADQVV
Trigger: AACTACCTGATCCGCCATCCAAACTGTGTCAATGTT...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTAACATTGACACAGTTTaGATGGCGGATCAGGTAGTT +
Preference number: 4 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPNIDTV*MADQVV
Trigger: AACTACCTGATCCGCCATCCAAACTGTGTCAATGTT...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTATCTGGAGCGTATTTTaGGGATATTCCCAAAATGAC +
Preference number: 4 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPIWSVF*GYSQND
Trigger: GTCATTTTGGGAATATCCTCAAAATACGCTCCAGAT...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGAGAAGCCCCAAGTTATaGTACAAAATATTTCGCTGT +
Preference number: 4 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRRSPKL*YKIFRC
Trigger: ACAGCGAAATATTTTGTATCATAACTTGGGGCTTCT...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR TCA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTGCAAATGCTGAATTCTaGACAATAATATCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPANAEF*TIISPP
Trigger: AGGAGGAGATATTATTGTTCAGAATTCAGCATTTGC...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR GCA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTGAAACAATAACCCTGTaGCAGAGTCAAAATAGAATT +
Preference number: 4 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPETITL*QSQNRI
Trigger: AATTCTATTTTGACTCTGGCACAGGGTTATTGTTTC...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 90 bp GCTCCTCGGGGGAGAAAGCAAAGGTCGCTGGGGCGTCTTGGCTCCTaGAGGTCAGTTTGGCGGAGGCGTGGTTCTTTGGAGGAGGCGCGG +
Preference number: 5 (lower is better)
Translates to: APRGRKQRSLGRLGS*RSVWRRRGSLEEAR
Trigger: CCGCGCCTCCTCCAAAGAACCACGCCTCCGCCAAACTGACCTCCAGGAGCCAAGACGCCCCAGCGACCTTTGCTTTCTCCCCCGAGGAGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS GCA 90 bp GTGTTCTTGTGCCTCTTCCGCTTTCGGCTCTCGCTCGGAGTCCGCTaGTCCTCGGGGGAGAAAGCAAAGGTCGCTGGGGCGTCTTGGCTC +
Preference number: 5 (lower is better)
Translates to: VFLCLFRFRLSLGVR*SSGEKAKVAGASWL
Trigger: GAGCCAAGACGCCCCAGCGACCTTTGCTTTCTCCCCCGAGGAGCAGCGGACTCCGAGCGAGAGCCGAAAGCGGAAGAGGCACAAGAACAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CCA 90 bp GTCCGCTGCTCCTCGGGGGAGAAAGCAAAGGTCGCTGGGGCGTCTTaGCTCCTGGAGGTCAGTTTGGCGGAGGCGTGGTTCTTTGGAGGA +
Preference number: 5 (lower is better)
Translates to: VRCSSGEKAKVAGAS*LLEVSLAEAWFFGG
Trigger: TCCTCCAAAGAACCACGCCTCCGCCAAACTGACCTCCAGGAGCCAAGACGCCCCAGCGACCTTTGCTTTCTCCCCCGAGGAGCAGCGGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CCA 90 bp AGAAAGCAAAGGTCGCTGGGGCGTCTTGGCTCCTGGAGGTCAGTTTaGCGGAGGCGTGGTTCTTTGGAGGAGGCGCGGGACGTAAGGGAA +
Preference number: 5 (lower is better)
Translates to: RKQRSLGRLGSWRSV*RRRGSLEEARDVRE
Trigger: TTCCCTTACGTCCCGCGCCTCCTCCAAAGAACCACGCCTCCGCCAAACTGACCTCCAGGAGCCAAGACGCCCCAGCGACCTTTGCTTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS-3UTR CAA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTCGGAGGCGTGGTTCTTaGGAGGAGGCGCGGGACGTA +
Preference number: 5 (lower is better)
Translates to: PLPHVSPLAEERASRSSTRRRGS*EEARDV
Trigger: TACGTCCCGCGCCTCCTCCAAAGAACCACGCCTCCG...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTATGGCCGGCATGCGCTaGACCGCCGAGGGCTTCTTG +
Preference number: 5 (lower is better)
Translates to: PLPHVSPLAEERASRSSTMAGMR*TAEGFL
Trigger: CAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCAT...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 90 bp TGCACTCGGGGCAGCGGAGAAGAGTTAGCTCCTCTGCTTGGTACATaGAATAGTCGGTGCTGGCCACCACAATTCGGTCTCCAGCTTCCC +
Preference number: 5 (lower is better)
Translates to: CTRGSGEELAPLLGT*NSRCWPPQFGLQLP
Trigger: GGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp ACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTACCACCTGCACAGTGCCAAGGCAGCCTCCTGCTCTCATaGTGGTACTCGTGGGTATCG +
Preference number: 5 (lower is better)
Translates to: TQQPQEDKRALPPAQCQGSLLLS*WYSWVS
Trigger: CGATACCCACGAGTACCACAATGAGAGCAGGAGGCT...GCCTTGGCACTGTGCAGGTGGTAGAGCCCTTTTGTCTTCCTGAGGCTGCTGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 90 bp CCGCAAGCGCCACAAAGAACGAGAAGCTGGTTATGGCGAAGCAGATaGAGGTGTTCTTGTGCCTCTTCCGCTTTCGGCTCTCGCTCGGAG +
Preference number: 5 (lower is better)
Translates to: PQAPQRTRSWLWRSR*RCSCASSAFGSRSE
Trigger: CTCCGAGCGAGAGCCGAAAGCGGAAGAGGCACAAGAACACCTTCATCTGCTTCGCCATAACCAGCTTCTCGTTCTTTGTGGCGCTTGCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS TCA 90 bp ACAATTCGGTCTCCAGCTTCCCAAGTGCTGACGTCGTCCAACAGGTaGAGCTTCACTCCATCCGCAATGTCCACCCGGAAGCCTGAGAGG +
Preference number: 5 (lower is better)
Translates to: TIRSPASQVLTSSNR*SFTPSAMSTRKPER
Trigger: CCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 90 bp AGTCGGTGCTGGCCACCACAATTCGGTCTCCAGCTTCCCAAGTGCTaGCGTCGTCCAACAGGTGAAGCTTCACTCCATCCGCAATGTCCA +
Preference number: 5 (lower is better)
Translates to: SRCWPPQFGLQLPKC*RRPTGEASLHPQCP
Trigger: TGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 90 bp ATCTCACCGACGTGCAGGTACTGGGGGATCTCTTTGACTTTGACCTaGGAACGGCTGCACTCGGGGCAGCGGAGAAGAGTTAGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: ISPTCRYWGISLTLT*ERLHSGQRRRVSSS
Trigger: AGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAGAGATCCCCCAGTACCTGCACGTCGGTGAGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS GCA 90 bp AATGAGCCTGTCGATGATGGCTGCAACGCGTGGCTTCTCAGGGTCTaGATCCTGATGGGGCCGAAACCTTGCACTGTTATCCAGGCAGAG +
Preference number: 5 (lower is better)
Translates to: NEPVDDGCNAWLLRV*ILMGPKPCTVIQAE
Trigger: CTCTGCCTGGATAACAGTGCAAGGTTTCGGCCCCATCAGGATGCAGACCCTGAGAAGCCACGCGTTGCAGCCATCATCGACAGGCTCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp ACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTACCACCTGCACAGTGCCAAGGCTACCCCGAAGCACCATaGGGTGGGATGGGTATTCAT +
Preference number: 5 (lower is better)
Translates to: TQQPQEDKRALPPAQCQGYPEAP*GGMGIH
Trigger: ATGAATACCCATCCCACCCAATGGTGCTTCGGGGTA...GCCTTGGCACTGTGCAGGTGGTAGAGCCCTTTTGTCTTCCTGAGGCTGCTGCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCACGAGACCAACTGCTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTACAGATGTGCTGGCTaGGCCAGTCCCAGAACTGCT +
Preference number: 5 (lower is better)
Translates to: PRDQLLSERSSLRKTKGLYRCAG*ASPRTA
Trigger: AGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTA...GAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 90 bp CACTCCGAGGCCCTGCTCATCGGGACTGGTGAACAGCTTCGTCCATaGCGGTGCGAAGTTTCCGCTGAATCCCAAAAATACGACACTACC +
Preference number: 5 (lower is better)
Translates to: HSEALLIGTGEQLRP*RCEVSAESQKYDTT
Trigger: GGTAGTGTCGTATTTTTGGGATTCAGCGGAAACTTCGCACCGTCATGGACGAAGCTGTTCACCAGTCCCGATGAGCAGGGCCTCGGAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 90 bp CACTCCATCACGCATGACGGTGCACATGGAGCTGTTCCTGTCCGTTaGGAGGAGAGTGCCCGGCTTGGTAAGAAGCCCCAAGTTATGATA +
Preference number: 5 (lower is better)
Translates to: HSITHDGAHGAVPVR*EESARLGKKPQVMI
Trigger: TATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 90 bp GACAAAGAGGGACTCTGTCACCTCCTGACTGGACCCTTCATCGCTTaGGAAGCTCCCATCACTGGCAAAGGTCAGCCCCTTTCCGTTATC +
Preference number: 5 (lower is better)
Translates to: DKEGLCHLLTGPFIA*EAPITGKGQPLSVI
Trigger: GATAACGGAAAGGGGCTGACCTTTGCCAGTGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp ACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTACCACCTGCACAGTGCCAAGGCTTATTGATCAGGTGGTaGTTGGGGTGGGCAATCCAG +
Preference number: 5 (lower is better)
Translates to: TQQPQEDKRALPPAQCQGLLIRW*LGWAIQ
Trigger: CTGGATTGCCCACCCCAACAACCACCTGATCAATAA...GCCTTGGCACTGTGCAGGTGGTAGAGCCCTTTTGTCTTCCTGAGGCTGCTGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTCCTGCAGCTGCGTTATaGATCAGGTGGTTGTTGGGG +
Preference number: 5 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPPAAAL*IRWLLG
Trigger: CCCCAACAACCACCTGATCAATAACGCAGCTGCAGG...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTGAGATGGCCCTCTGGTaGATACCCCGAAGCACCATT +
Preference number: 5 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPEMALW*IPRSTI
Trigger: AATGGTGCTTCGGGGTATCAACCAGAGGGCCATCTC...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGGTGGGTTCCACAGCCTaGACAGAGCCCCGTGAGCAT +
Preference number: 5 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPVGSTA*TEPREH
Trigger: ATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCAC...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS GCA 90 bp CTTTCAAAGCCTGCTGTAACAGGTCAAGGTCTCTTCTGTGGACACTaGCGGTCCGGGAGCACCCATATTCCTCCATCTGCAACGGGAGAA +
Preference number: 5 (lower is better)
Translates to: LSKPAVTGQGLFCGH*RSGSTHIPPSATGE
Trigger: TTCTCCCGTTGCAGATGGAGGAATATGGGTGCTCCCGGACCGGCAGTGTCCACAGAAGAGACCTTGACCTGTTACAGCAGGCTTTGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 90 bp ATGGGGCCGAAACCTTGCACTGTTATCCAGGCAGAGGTACTCCCTTaGGTCAGATGCACTGGCGTTGGTCGTTTTGACACCTTTGTCCAC +
Preference number: 5 (lower is better)
Translates to: MGPKPCTVIQAEVLP*VRCTGVGRFDTFVH
Trigger: GTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAGGTTTCGGCCCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 90 bp AATTCCTACTCTCCCCGACAAAGAGGGACTCTGTCACCTCCTGACTaGACCCTTCATCGCTTGGGAAGCTCCCATCACTGGCAAAGGTCA +
Preference number: 5 (lower is better)
Translates to: NSYSPRQRGTLSPPD*TLHRLGSSHHWQRS
Trigger: TGACCTTTGCCAGTGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 90 bp TTCTCCAGCATGACAACAGGCTGGTACTGTGGAGAGATGGCCCTCTaGTTGATACCCCGAAGCACCATTGGGTGGGATGGGTATTCATCC +
Preference number: 5 (lower is better)
Translates to: FSSMTTGWYCGEMAL*LIPRSTIGWDGYSS
Trigger: GGATGAATACCCATCCCACCCAATGGTGCTTCGGGGTATCAACCAGAGGGCCATCTCTCCACAGTACCAGCCTGTTGTCATGCTGGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 90 bp CTGCCGCTGCAGAAAGCCAACGGTAACCTGAAAGCTCGTGTTGGCTaGGTAACAGAGGCCAACCCGGATCCAGTCATCCTTGTTGAAGTT +
Preference number: 5 (lower is better)
Translates to: LPLQKANGNLKARVG*VTEANPDPVILVEV
Trigger: AACTTCAACAAGGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTGTTTCCGTTTTGAGGTaGCAGGAAAGCAGGGGAGTG +
Preference number: 5 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPVSVLR*QESRGV
Trigger: CACTCCCCTGCTTTCCTGCAACCTCAAAACGGAAAC...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTCCTGTAGCCCAGACCTaGGATCAGTTTACTCCCCAA +
Preference number: 5 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPPVAQT*DQFTPQ
Trigger: TTGGGGAGTAAACTGATCCAAGGTCTGGGCTACAGG...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCACGAGACCAACTGCTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAGGGCTCGGGCAATCCAGAAAGTaGAAACAGCCATGCAGTCTG +
Preference number: 5 (lower is better)
Translates to: PRDQLLSERSSLRKTKGLGQSRK*KQPCSL
Trigger: CAGACTGCATGGCTGTTTCAACTTTCTGGATTGCCC...GAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CTGTACAGAAATGAGCCCCAGACATCACTGAACAGGGCAGCGACTGGAGTTAGCCCTGCAGCTGCGTTATaGATCAGGTGGTTGTTGGGG +
Preference number: 5 (lower is better)
Translates to: LYRNEPQTSLNRAATGVSPAAAL*IRWLLG
Trigger: CCCCAACAACCACCTGATCAATAACGCAGCTGCAGG...GCTAACTCCAGTCGCTGCCCTGTTCAGTGATGTCTGGGGCTCATTTCTGTACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCACGAGACCAACTGCTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTCAGATGCACTGGCGTaGGTCGTTTTGACACCTTTG +
Preference number: 5 (lower is better)
Translates to: PRDQLLSERSSLRKTKGLSDALA*VVLTPL
Trigger: CAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGA...GAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCACGAGACCAACTGCTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTACTGCGGGTACGCTTaGGCCATGCAGTTACTGATA +
Preference number: 5 (lower is better)
Translates to: PRDQLLSERSSLRKTKGLYCGYA*AMQLLI
Trigger: TATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTA...GAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AAAGAGCACATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAGTGGGTTCCACAGCCTaGACAGAGCCCCGTGAGCAT +
Preference number: 5 (lower is better)
Translates to: KEHMTRQKGHVLGLSCHLVGSTA*TEPREH
Trigger: ATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCAC...TAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATGTGCTCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS GCA 90 bp GCATCTGAGGTCAGGCGGAACAAATCCCCCTCCTTGATAACAATGTaGTTCGCAGAATCTTGTCCTGGATCCCAGTTCCTGAGACGAGGG +
Preference number: 5 (lower is better)
Translates to: ASEVRRNKSPSLITM*FAESCPGSQFLRRG
Trigger: CCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS GCA 90 bp CAATCCGGCCGGGCTCCTGAGCTCTCAAAAACTCCTGCAGCCTCCTaGTCTCATTGTGGTACTCGTGGGTATCGAACTTCTCGTTTTCTA +
Preference number: 5 (lower is better)
Translates to: QSGRAPELSKTPAAS*SHCGTRGYRTSRFL
Trigger: TAGAAAACGAGAAGTTCGATACCCACGAGTACCACAATGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCCGGCCGGATTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 90 bp TCCTGTGAGCCTGCAGCTGCGTTATTGATCAGGTGGTTGTTGGGGTaGGCAATCCAGAAAGTTGAAACAGCCATGCAGTCTGTGGTAGGC +
Preference number: 5 (lower is better)
Translates to: SCEPAAALLIRWLLG*AIQKVETAMQSVVG
Trigger: GCCTACCACAGACTGCATGGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGGTGGCCGTTTCCGTTTaGAGGTTGCAGGAAAGCAGG +
Preference number: 5 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPVAVSV*RLQESR
Trigger: CCTGCTTTCCTGCAACCTCAAAACGGAAACGGCCAC...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTATCCTCCATCTCTCCTaGGATCACAATGTTGCGGGT +
Preference number: 5 (lower is better)
Translates to: PLPHVSPLAEERASRSSTILHLS*DHNVAG
Trigger: ACCCGCAACATTGTGATCCAAGGAGAGATGGAGGAT...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AAGGAGCAAGTTCAAGGAGCCCTTGGACTCCCTGCACCCCACTATACAAAAAGCAGGAGAGTGCCCGGCTaGGTAAGAAGCCCCAAGTTA +
Preference number: 5 (lower is better)
Translates to: KEQVQGALGLPAPHYTKSRRVPG*VRSPKL
Trigger: TAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCT...GCTTTTTGTATAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACTTGCTCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTTCAGATGCACTGGCGTaGGTCGTTTTGACACCTTTG +
Preference number: 5 (lower is better)
Translates to: PLPHVSPLAEERASRSSTSDALA*VVLTPL
Trigger: CAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGA...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTTACTGCGGGTACGCTTaGGCCATGCAGTTACTGATA +
Preference number: 5 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPYCGYA*AMQLLI
Trigger: TATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTA...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS GCA 90 bp TCCGTTGTCATTGTTCTTAAAAGCAATGAGCCTGTCGATGATGGCTaGAACGCGTGGCTTCTCAGGGTCTGCATCCTGATGGGGCCGAAA +
Preference number: 5 (lower is better)
Translates to: SVVIVLKSNEPVDDG*NAWLLRVCILMGPK
Trigger: TTTCGGCCCCATCAGGATGCAGACCCTGAGAAGCCACGCGTTGCAGCCATCATCGACAGGCTCATTGCTTTTAAGAACAATGACAACGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 90 bp ATTGTTCTTAAAAGCAATGAGCCTGTCGATGATGGCTGCAACGCGTaGCTTCTCAGGGTCTGCATCCTGATGGGGCCGAAACCTTGCACT +
Preference number: 5 (lower is better)
Translates to: IVLKSNEPVDDGCNA*LLRVCILMGPKPCT
Trigger: AGTGCAAGGTTTCGGCCCCATCAGGATGCAGACCCTGAGAAGCCACGCGTTGCAGCCATCATCGACAGGCTCATTGCTTTTAAGAACAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp ACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTACCACCTGCACAGTGCCAAGGCTCACGTTCATCTGACTaGCCATACAAGGTAATTGTC +
Preference number: 5 (lower is better)
Translates to: TQQPQEDKRALPPAQCQGSRSSD*PYKVIV
Trigger: GACAATTACCTTGTATGGCAAGTCAGATGAACGTGA...GCCTTGGCACTGTGCAGGTGGTAGAGCCCTTTTGTCTTCCTGAGGCTGCTGCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AAAGAGCACATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAGGAGAGTGCCCGGCTaGGTAAGAAGCCCCAAGTTA +
Preference number: 5 (lower is better)
Translates to: KEHMTRQKGHVLGLSCHLRRVPG*VRSPKL
Trigger: TAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCT...TAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATGTGCTCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTCACTGGACTCCCCAGTaGGTTCCTTGTGGAATAAAT +
Preference number: 5 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPHWTPQ*VPCGIN
Trigger: ATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTG...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTATGGCCGGCATGCGCTaGACCGCCGAGGGCTTCTTG +
Preference number: 5 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPMAGMR*TAEGFL
Trigger: CAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCAT...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTAATACGACACTACCTTaGCTGTACAGATGTGCTGGC +
Preference number: 5 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPNTTLP*LYRCAG
Trigger: GCCAGCACATCTGTACAGCAAAGGTAGTGTCGTATT...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCTTTGCCACATGTGTCCCCACTGGCTGAAGAAAGGGCCAGTAGAAGCAGCACTAATACGACACTACCTTaGCTGTACAGATGTGCTGGC +
Preference number: 5 (lower is better)
Translates to: PLPHVSPLAEERASRSSTNTTLP*LYRCAG
Trigger: GCCAGCACATCTGTACAGCAAAGGTAGTGTCGTATT...AGTGCTGCTTCTACTGGCCCTTTCTTCAGCCAGTGGGGACACATGTGGCAAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 90 bp TGCGTTATTGATCAGGTGGTTGTTGGGGTGGGCAATCCAGAAAGTTaGAACAGCCATGCAGTCTGTGGTAGGCACAGGGACGTAGTTTCC +
Preference number: 5 (lower is better)
Translates to: CVIDQVVVGVGNPES*NSHAVCGRHRDVVS
Trigger: GGAAACTACGTCCCTGTGCCTACCACAGACTGCATGGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS GCA 90 bp CCAGGTCTGAACATACACCTGGGCGTAGGTCCCGCTACAGATCACTaGATTCCACTTAGTAACATTGACACAGTTTGGATGGCGGATCAG +
Preference number: 5 (lower is better)
Translates to: PGLNIHLGVGPATDH*IPLSNIDTVWMADQ
Trigger: CTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAGGTGTATGTTCAGACCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 90 bp CCCAGACCTTGGATCAGTTTACTCCCCAACCGATCCTGGATCATCTaGATTGTTCCCTGTAACAGGCTCTTGACTGCTGAGTCTCCAACA +
Preference number: 5 (lower is better)
Translates to: PRPWISLLPNRSWII*IVPCNRLLTAESPT
Trigger: TGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 90 bp CATATTCCAGCATCCTGTGAGCCTGCAGCTGCGTTATTGATCAGGTaGTTGTTGGGGTGGGCAATCCAGAAAGTTGAAACAGCCATGCAG +
Preference number: 5 (lower is better)
Translates to: HIPASCEPAAALLIR*LLGWAIQKVETAMQ
Trigger: CTGCATGGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAGGATGCTGGAATATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 90 bp AGGTGTCCTTGTATCCTGTCACAGAGCCATCAATGTCATGGAAGATaGAGTTCTTATCGCCGTCCAGCTCACAATCCTCAAACCAGGGGC +
Preference number: 5 (lower is better)
Translates to: RCPCILSQSHQCHGR*SSYRRPAHNPQTRG
Trigger: GCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGCCTGGATCATCTGGATaGTTCCCTGTAACAGGCTCT +
Preference number: 5 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPPGSSG*FPVTGS
Trigger: AGAGCCTGTTACAGGGAACAATCCAGATGATCCAGG...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AAAGAGCACATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTACCTTGGATCACAATGTaGCGGGTGAGAAGTCCAACC +
Preference number: 5 (lower is better)
Translates to: KEHMTRQKGHVLGLSCHLPWITM*RVRSPT
Trigger: GGTTGGACTTCTCACCCGCAACATTGTGATCCAAGG...TAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATGTGCTCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGGGGCAATCCAGAAAGTaGAAACAGCCATGCAGTCTG +
Preference number: 5 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPGQSRK*KQPCSL
Trigger: CAGACTGCATGGCTGTTTCAACTTTCTGGATTGCCC...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp ACGCAGCAGCCTCAGGAAGACAAAAGGGCTCTACCACCTGCACAGTGCCAAGGCTCCCCAGTTGGTTCCTaGTGGAATAAATACCATATT +
Preference number: 5 (lower is better)
Translates to: TQQPQEDKRALPPAQCQGSPVGS*WNKYHI
Trigger: AATATGGTATTTATTCCACAAGGAACCAACTGGGGA...GCCTTGGCACTGTGCAGGTGGTAGAGCCCTTTTGTCTTCCTGAGGCTGCTGCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTCAGGCTCCGTTGTCATaGTTCTTAAAAGCAATGAGC +
Preference number: 5 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPQAPLS*FLKAMS
Trigger: GCTCATTGCTTTTAAGAACAATGACAACGGAGCCTG...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AAAGAGCACATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTATCTGAAAGCCTCGGATaGGGAATGTCCTGTTCCTGG +
Preference number: 5 (lower is better)
Translates to: KEHMTRQKGHVLGLSCHLSESLG*GMSCSW
Trigger: CCAGGAACAGGACATTCCCAATCCGAGGCTTTCAGA...TAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATGTGCTCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CTGTACAGAAATGAGCCCCAGACATCACTGAACAGGGCAGCGACTGGAGTTAGCCGTTATTCCTGGGTGTaGTCTGCCAGGAATTCTTCA +
Preference number: 5 (lower is better)
Translates to: LYRNEPQTSLNRAATGVSRYSWV*SARNSS
Trigger: TGAAGAATTCCTGGCAGACAACACCCAGGAATAACG...GCTAACTCCAGTCGCTGCCCTGTTCAGTGATGTCTGGGGCTCATTTCTGTACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTTTTCTCACAGATTCATaGCAGGAAGAACTTCCACCA +
Preference number: 5 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPFLTDS*QEELPP
Trigger: TGGTGGAAGTTCTTCCTGCAATGAATCTGTGAGAAA...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGCTGGCGTTGGTCGTTTaGACACCTTTGTCCACAAAT +
Preference number: 5 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPLALVV*TPLSTN
Trigger: ATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAG...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 90 bp CATAGTTTCTCACAGATTCATTGCAGGAAGAACTTCCACCATCGATaGCACCAACTAAGGCCCAAGCTTGCCTGTAGCCCAGACCTTGGA +
Preference number: 5 (lower is better)
Translates to: HSFSQIHCRKNFHHR*HQLRPKLACSPDLG
Trigger: TCCAAGGTCTGGGCTACAGGCAAGCTTGGGCCTTAGTTGGTGTCATCGATGGTGGAAGTTCTTCCTGCAATGAATCTGTGAGAAACTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 90 bp CAAGGGAAACGTTATTCCTGGGTGTTGTCTGCCAGGAATTCTTCATaGGGAAGCCAATTGCACTGCTGTACCTGTCTGGAGTTGGCACAT +
Preference number: 5 (lower is better)
Translates to: QGKRYSWVLSARNSS*GSQLHCCTCLELAH
Trigger: ATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 90 bp GGAAATAATGGATGGATCTCCTCGCTGAATTTCTGCTTTCCCAGGTaGCTGGAATCGTACAGGGAGGTAGCTTTTGTGAGGGTCACTGGT +
Preference number: 5 (lower is better)
Translates to: GNNGWISSLNFCFPR*LESYREVAFVRVTG
Trigger: ACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 90 bp CCCGCTACAGATCACTGCATTCCACTTAGTAACATTGACACAGTTTaGATGGCGGATCAGGTAGTTGTCCATCCTTCCCACATAGGTGTC +
Preference number: 5 (lower is better)
Translates to: PATDHCIPLSNIDTV*MADQVVVHPSHIGV
Trigger: GACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCAGTTTCCGTTTTGAGGTaGCAGGAAAGCAGGGGAGTG +
Preference number: 5 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLAVSVLR*QESRGV
Trigger: CACTCCCCTGCTTTCCTGCAACCTCAAAACGGAAAC...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCAGTGCTTCGCAGAATCTaGTCCTGGATCCCAGTTCCT +
Preference number: 5 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLAVLRRI*SWIPVP
Trigger: AGGAACTGGGATCCAGGACAAGATTCTGCGAAGCAC...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCACGAGACCAACTGCTCTCTGAACGCAGCAGCCTCAGGAAGACAAAAGGGCTCACGCCAATAAACTTCTaGCCAAATATTGGCATACTT +
Preference number: 5 (lower is better)
Translates to: PRDQLLSERSSLRKTKGLTPINF*PNIGIL
Trigger: AAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGT...GAGCCCTTTTGTCTTCCTGAGGCTGCTGCGTTCAGAGAGCAGTTGGTCTCGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp GATGAACTTTTCTGCACTCAATTGCTACCGTCAGCCTGGCTATTCAGCCACCCGGTCGTTTTGACACCTTaGTCCACAAATAAACCAGCC +
Preference number: 5 (lower is better)
Translates to: DELFCTQLLPSAWLFSHPVVLTP*STNKPA
Trigger: GGCTGGTTTATTTGTGGACAAAGGTGTCAAAACGAC...CGGGTGGCTGAATAGCCAGGCTGACGGTAGCAATTGAGTGCAGAAAAGTTCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AAGGAGCAAGTTCAAGGAGCCCTTGGACTCCCTGCACCCCACTATACAAAAAGCGTCGTTTTGACACCTTaGTCCACAAATAAACCAGCC +
Preference number: 5 (lower is better)
Translates to: KEQVQGALGLPAPHYTKSVVLTP*STNKPA
Trigger: GGCTGGTTTATTTGTGGACAAAGGTGTCAAAACGAC...GCTTTTTGTATAGTGGGGTGCAGGGAGTCCAAGGGCTCCTTGAACTTGCTCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCATCTGAAAGCCTCGGATaGGGAATGTCCTGTTCCTGG +
Preference number: 5 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLASESLG*GMSCSW
Trigger: CCAGGAACAGGACATTCCCAATCCGAGGCTTTCAGA...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCATACCCCGAAGCACCATaGGGTGGGATGGGTATTCAT +
Preference number: 5 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLAYPEAP*GGMGIH
Trigger: ATGAATACCCATCCCACCCAATGGTGCTTCGGGGTA...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGGAGATGGCCCTCTGGTaGATACCCCGAAGCACCATT +
Preference number: 5 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDREMALW*IPRSTI
Trigger: AATGGTGCTTCGGGGTATCAACCAGAGGGCCATCTC...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 90 bp CTGGACAATTCTCATCTGGAGCGTATTTTGAGGATATTCCCAAAATaGCCGCAAGCGCCACAAAGAACGAGAAGCTGGTTATGGCGAAGC +
Preference number: 5 (lower is better)
Translates to: LDNSHLERILRIFPK*PQAPQRTRSWLWRS
Trigger: GCTTCGCCATAACCAGCTTCTCGTTCTTTGTGGCGCTTGCGGTCATTTTGGGAATATCCTCAAAATACGCTCCAGATGAGAATTGTCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS TCA 90 bp AAGCAGTCCTCCATCCTGAATGACTATAGAGTCCACTGTTGCATCTaGGGTCAGGCGGAACAAATCCCCCTCCTTGATAACAATGTGCTT +
Preference number: 5 (lower is better)
Translates to: KQSSILNDYRVHCCI*GQAEQIPLLDNNVL
Trigger: AAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTCTATAGTCATTCAGGATGGAGGACTGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS GCA 90 bp GCCATACAAGGTAATTGTCGCTTTGGATCTATAGCGGCATTTTTCTaGTCCAATATGAAGCGCCCCACCATCCTGGATCAGGATGTATCG +
Preference number: 5 (lower is better)
Translates to: AIQGNCRFGSIAAFF*SNMKRPTILDQDVS
Trigger: CGATACATCCTGATCCAGGATGGTGGGGCGCTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS GCA 90 bp TGTGGACCAAACTTCACAAGGGAAACGTTATTCCTGGGTGTTGTCTaGCAGGAATTCTTCATGAGGAAGCCAATTGCACTGCTGTACCTG +
Preference number: 5 (lower is better)
Translates to: CGPNFTRETLFLGVV*QEFFMRKPIALLYL
Trigger: CAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS GCA 90 bp GGCTTGGCCAGTCCCAGAACTGCTAATGAATCCGAGATATTCAGCTaGTTAATTTCTCCTCTTGTGCTCAACAGAACGATTGACCTTGGG +
Preference number: 5 (lower is better)
Translates to: GLASPRTANESEIFS*LISPLVLNRTIDLG
Trigger: CCCAAGGTCAATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACTGGCCAAGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 90 bp CAAATCCCCCTCCTTGATAACAATGTGCTTCGCAGAATCTTGTCCTaGATCCCAGTTCCTGAGACGAGGGTTTTGATCTGGACAATTCTC +
Preference number: 5 (lower is better)
Translates to: QIPLLDNNVLRRILS*IPVPETRVLIWTIL
Trigger: GAGAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS-3UTR CAA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTGTGGCCGTTTCCGTTTaGAGGTTGCAGGAAAGCAGG +
Preference number: 5 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPVAVSV*RLQESR
Trigger: CCTGCTTTCCTGCAACCTCAAAACGGAAACGGCCAC...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTACGCCAATAAACTTCTaGCCAAATATTGGCATACTT +
Preference number: 5 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPTPINF*PNIGIL
Trigger: AAGTATGCCAATATTTGGCAAGAAGTTTATTGGCGT...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTAGCCTCCTGCTCTCATaGTGGTACTCGTGGGTATCG +
Preference number: 5 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPSLLLS*WYSWVS
Trigger: CGATACCCACGAGTACCACAATGAGAGCAGGAGGCT...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGCCTGTAGCCCAGACCTaGGATCAGTTTACTCCCCAA +
Preference number: 5 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRPVAQT*DQFTPQ
Trigger: TTGGGGAGTAAACTGATCCAAGGTCTGGGCTACAGG...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCAGCCCATGTACTTGTTTaGGCCACCTTGAAAGCCGTA +
Preference number: 5 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLAAHVLV*ATLKAV
Trigger: TACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGC...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CCTGCACAGTGCCAAGGCCTGCAAGCTGACACTCAGGTAACTGCTTGGATTCCTGTTGGCACATACTTTTaGAAAGTACTCTTTGTGAGA +
Preference number: 5 (lower is better)
Translates to: PAQCQGLQADTQVTAWIPVGTYF*KVLFVR
Trigger: TCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAAC...AGGAATCCAAGCAGTTACCTGAGTGTCAGCTTGCAGGCCTTGGCACTGTGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 90 bp ATAAATACCATATTCCAGCATCCTGTGAGCCTGCAGCTGCGTTATTaGTCAGGTGGTTGTTGGGGTGGGCAATCCAGAAAGTTGAAACAG +
Preference number: 5 (lower is better)
Translates to: INTIFQHPVSLQLRY*SGGCWGGQSRKLKQ
Trigger: CTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAGGATGCTGGAATATGGTATTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTGTGCTTCGCAGAATCTaGTCCTGGATCCCAGTTCCT +
Preference number: 5 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPVLRRI*SWIPVP
Trigger: AGGAACTGGGATCCAGGACAAGATTCTGCGAAGCAC...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp CATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATAAACAAATCCCCCTCCTaGATAACAATGTGCTTCGCA +
Preference number: 5 (lower is better)
Translates to: HDQAKRTCAGPELPLKTINKSPS*ITMCFA
Trigger: TGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTT...TATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGCCTGGATCATCTGGATaGTTCCCTGTAACAGGCTCT +
Preference number: 5 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRPGSSG*FPVTGS
Trigger: AGAGCCTGTTACAGGGAACAATCCAGATGATCCAGG...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AAAGAGCACATGACCAGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTATTTCTCACAGATTCATaGCAGGAAGAACTTCCACCA +
Preference number: 5 (lower is better)
Translates to: KEHMTRQKGHVLGLSCHLFLTDS*QEELPP
Trigger: TGGTGGAAGTTCTTCCTGCAATGAATCTGTGAGAAA...TAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCTGGTCATGTGCTCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTCCTTGGATCACAATGTaGCGGGTGAGAAGTCCAACC +
Preference number: 5 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPPWITM*RVRSPT
Trigger: GGTTGGACTTCTCACCCGCAACATTGTGATCCAAGG...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS GCA 90 bp ATTCCTGGGTGTTGTCTGCCAGGAATTCTTCATGAGGAAGCCAATTaGACTGCTGTACCTGTCTGGAGTTGGCACATACTTTTTGAAAGT +
Preference number: 5 (lower is better)
Translates to: IPGCCLPGILHEEAN*TAVPVWSWHILFES
Trigger: ACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGCCTGAGACGAGGGTTTaGATCTGGACAATTCTCATC +
Preference number: 5 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRPETRV*IWTILI
Trigger: GATGAGAATTGTCCAGATCAAAACCCTCGTCTCAGG...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTATCCTCCATCTCTCCTaGGATCACAATGTTGCGGGT +
Preference number: 5 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPILHLS*DHNVAG
Trigger: ACCCGCAACATTGTGATCCAAGGAGAGATGGAGGAT...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGAAGCCAATGGTGTCTTaGATTAGCAAGCCACTGGTC +
Preference number: 5 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRKPMVS*ISKPLV
Trigger: GACCAGTGGCTTGCTAATCAAAGACACCATTGGCTT...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTTTATTGATCAGGTGGTaGTTGGGGTGGGCAATCCAG +
Preference number: 5 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPLLIRW*LGWAIQ
Trigger: CTGGATTGCCCACCCCAACAACCACCTGATCAATAA...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCACAGGCTCCGTTGTCATaGTTCTTAAAAGCAATGAGC +
Preference number: 5 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLAQAPLS*FLKAMS
Trigger: GCTCATTGCTTTTAAGAACAATGACAACGGAGCCTG...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCACTTGTTTTGGCCACCTaGAAAGCCGTAATTCCTACT +
Preference number: 5 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLALVLAT*KAVIPT
Trigger: AGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAG...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp AATCCACACAACAAGACAACAAAGCACAGGTACAAGACCAAAACCAAGGACAGGCGTTATTCCTGGGTGTaGTCTGCCAGGAATTCTTCA +
Preference number: 5 (lower is better)
Translates to: NPHNKTTKHRYKTKTKDRRYSWV*SARNSS
Trigger: TGAAGAATTCCTGGCAGACAACACCCAGGAATAACG...CCTGTCCTTGGTTTTGGTCTTGTACCTGTGCTTTGTTGTCTTGTTGTGTGGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 90 bp AAAGGTGTCATAATCGAAGAACTGGCAGTGATTTTCTGCATAGCATaGATCCTCCATCTCTCCTTGGATCACAATGTTGCGGGTGAGAAG +
Preference number: 5 (lower is better)
Translates to: KGVIIEELAVIFCIA*ILHLSLDHNVAGEK
Trigger: CTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 90 bp CACCATCCTGGATCAGGATGTATCGAGTCCTCAAAGTTATATTCTTaGATCCATCTTTATCATCCCCAAACACAAGCAGTCCTCCATCCT +
Preference number: 5 (lower is better)
Translates to: HHPGSGCIESSKLYS*IHLYHPQTQAVLHP
Trigger: AGGATGGAGGACTGCTTGTGTTTGGGGATGATAAAGATGGATCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCCAGGATGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS-3UTR CAA 90 bp AGGCAAAAAGGACATGTGCTGGGCCTGAGTTGCCACTTAAAACCATATCTAGCATCACGTTCATCTGACTaGCCATACAAGGTAATTGTC +
Preference number: 5 (lower is better)
Translates to: RQKGHVLGLSCHLKPYLASRSSD*PYKVIV
Trigger: GACAATTACCTTGTATGGCAAGTCAGATGAACGTGA...TGCTAGATATGGTTTTAAGTGGCAACTCAGGCCCAGCACATGTCCTTTTTGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTAAGCCAATGGTGTCTTaGATTAGCAAGCCACTGGTC +
Preference number: 5 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPKPMVS*ISKPLV
Trigger: GACCAGTGGCTTGCTAATCAAAGACACCATTGGCTT...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTCACTGGACTCCCCAGTaGGTTCCTTGTGGAATAAAT +
Preference number: 5 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPHWTPQ*VPCGIN
Trigger: ATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTG...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTCTGGCGTTGGTCGTTTaGACACCTTTGTCCACAAAT +
Preference number: 5 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPLALVV*TPLSTN
Trigger: ATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAG...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTAACAAATCCCCCTCCTaGATAACAATGTGCTTCGCA +
Preference number: 5 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPNKSPS*ITMCFA
Trigger: TGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTT...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp ACCCAGAGTCCTTTCTTCTTGTCTTTGAAAGCTACATTCACTAAGAGACTCCCTCTTGTTTTGGCCACCTaGAAAGCCGTAATTCCTACT +
Preference number: 5 (lower is better)
Translates to: TQSPFFLSLKATFTKRLPLVLAT*KAVIPT
Trigger: AGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAG...AGGGAGTCTCTTAGTGAATGTAGCTTTCAAAGACAAGAAGAAAGGACTCTGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 90 bp GCCAATAAACTTCTTGCCAAATATTGGCATACTTTCACGTTCATCTaGCTTGCCATACAAGGTAATTGTCGCTTTGGATCTATAGCGGCA +
Preference number: 5 (lower is better)
Translates to: ANKLLAKYWHTFTFI*LAIQGNCRFGSIAA
Trigger: TGCCGCTATAGATCCAAAGCGACAATTACCTTGTATGGCAAGTCAGATGAACGTGAAAGTATGCCAATATTTGGCAAGAAGTTTATTGGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS-3UTR CAA 90 bp GTAGCATGTTCTGTAAAGTTACACAAGTCACAGAGCTGTCCTAGAATGTCTCCTTCCCCAGTTGGTTCCTaGTGGAATAAATACCATATT +
Preference number: 5 (lower is better)
Translates to: VACSVKLHKSQSCPRMSPSPVGS*WNKYHI
Trigger: AATATGGTATTTATTCCACAAGGAACCAACTGGGGA...AGGAGACATTCTAGGACAGCTCTGTGACTTGTGTAACTTTACAGAACATGCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp AGGTCGCTGGGGCGTCTTGGCTCCTGGAGGTCAGTTTaGCGGAGGCGTGGTTCTTTGGAGGAGGCGCGGGAC +
Preference number: 6 (lower is better)
Translates to: RSLGRLGSWRSV*RRRGSLEEARD
Trigger: GTCCCGCGCCTCCTCCAAAGAACCACGCCTCCGCCAAACTGACCTCCAGGAGCCAAGACGCCCCAGCGACCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CAA 72 bp AAGGTCGCTGGGGCGTCTTGGCTCCTGGAGGTCAGTTaGGCGGAGGCGTGGTTCTTTGGAGGAGGCGCGGGA +
Preference number: 6 (lower is better)
Translates to: KVAGASWLLEVS*AEAWFFGGGAG
Trigger: TCCCGCGCCTCCTCCAAAGAACCACGCCTCCGCCAAACTGACCTCCAGGAGCCAAGACGCCCCAGCGACCTT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CCA 72 bp GCGTCTTGGCTCCTGGAGGTCAGTTTGGCGGAGGCGTaGTTCTTTGGAGGAGGCGCGGGACGTAAGGGAACC +
Preference number: 6 (lower is better)
Translates to: ASWLLEVSLAEA*FFGGGAGRKGT
Trigger: GGTTCCCTTACGTCCCGCGCCTCCTCCAAAGAACCACGCCTCCGCCAAACTGACCTCCAGGAGCCAAGACGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CCA 72 bp TCCTCGGGGGAGAAAGCAAAGGTCGCTGGGGCGTCTTaGCTCCTGGAGGTCAGTTTGGCGGAGGCGTGGTTC +
Preference number: 6 (lower is better)
Translates to: SSGEKAKVAGAS*LLEVSLAEAWF
Trigger: GAACCACGCCTCCGCCAAACTGACCTCCAGGAGCCAAGACGCCCCAGCGACCTTTGCTTTCTCCCCCGAGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CCA 72 bp AGTCCGCTGCTCCTCGGGGGAGAAAGCAAAGGTCGCTaGGGCGTCTTGGCTCCTGGAGGTCAGTTTGGCGGA +
Preference number: 6 (lower is better)
Translates to: SPLLLGGESKGR*GVLAPGGQFGG
Trigger: TCCGCCAAACTGACCTCCAGGAGCCAAGACGCCCCAGCGACCTTTGCTTTCTCCCCCGAGGAGCAGCGGACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CAA 72 bp GGCTCCTGGAGGTCAGTTTGGCGGAGGCGTGGTTCTTaGGAGGAGGCGCGGGACGTAAGGGAACCACCTTCC +
Preference number: 6 (lower is better)
Translates to: GSWRSVWRRRGS*EEARDVREPPS
Trigger: GGAAGGTGGTTCCCTTACGTCCCGCGCCTCCTCCAAAGAACCACGCCTCCGCCAAACTGACCTCCAGGAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CAA 90 bp GGGCGTCTTGGCTCCTGGAGGTCAGTTTGGCGGAGGCGTGGTTCTTaGGAGGAGGCGCGGGACGTAAGGGAACCACCTTCCCGGGAACAT +
Preference number: 6 (lower is better)
Translates to: GRLGSWRSVWRRRGS*EEARDVREPPSREH
Trigger: ATGTTCCCGGGAAGGTGGTTCCCTTACGTCCCGCGCCTCCTCCAAAGAACCACGCCTCCGCCAAACTGACCTCCAGGAGCCAAGACGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CAA 90 bp GAGAAAGCAAAGGTCGCTGGGGCGTCTTGGCTCCTGGAGGTCAGTTaGGCGGAGGCGTGGTTCTTTGGAGGAGGCGCGGGACGTAAGGGA +
Preference number: 6 (lower is better)
Translates to: EKAKVAGASWLLEVS*AEAWFFGGGAGRKG
Trigger: TCCCTTACGTCCCGCGCCTCCTCCAAAGAACCACGCCTCCGCCAAACTGACCTCCAGGAGCCAAGACGCCCCAGCGACCTTTGCTTTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CCA 72 bp GGGAGAAAGCAAAGGTCGCTGGGGCGTCTTGGCTCCTaGAGGTCAGTTTGGCGGAGGCGTGGTTCTTTGGAG +
Preference number: 6 (lower is better)
Translates to: GRKQRSLGRLGS*RSVWRRRGSLE
Trigger: CTCCAAAGAACCACGCCTCCGCCAAACTGACCTCCAGGAGCCAAGACGCCCCAGCGACCTTTGCTTTCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CAA 90 bp TTTGTGAGGGTCACTGGTAAACACCATCTGGTGGGTTCCACAGCCTaGACAGAGCCCCGTGAGCATGGCCGGCATGCGCTTGACCGCCGA +
Preference number: 6 (lower is better)
Translates to: FVRVTGKHHLVGSTA*TEPREHGRHALDRR
Trigger: TCGGCGGTCAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAGATGGTGTTTACCAGTGACCCTCACAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp TCACTGGTAAACACCATCTGGTGGGTTCCACAGCCTTaGCAGAGCCCCGTGAGCATGGCCGGCATGCGCTTG +
Preference number: 6 (lower is better)
Translates to: SLVNTIWWVPQP*QSPVSMAGMRL
Trigger: CAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAGATGGTGTTTACCAGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp ACGCATGACGGTGCACATGGAGCTGTTCCTGTCCGTTaGGAGGAGAGTGCCCGGCTTGGTAAGAAGCCCCAA +
Preference number: 6 (lower is better)
Translates to: THDGAHGAVPVR*EESARLGKKPQ
Trigger: TTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 72 bp GGGACTCTGTCACCTCCTGACTGGACCCTTCATCGCTaGGGAAGCTCCCATCACTGGCAAAGGTCAGCCCCT +
Preference number: 6 (lower is better)
Translates to: GTLSPPDWTLHR*GSSHHWQRSAP
Trigger: AGGGGCTGACCTTTGCCAGTGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 72 bp GTCACTGGTAAACACCATCTGGTGGGTTCCACAGCCTaGACAGAGCCCCGTGAGCATGGCCGGCATGCGCTT +
Preference number: 6 (lower is better)
Translates to: VTGKHHLVGSTA*TEPREHGRHAL
Trigger: AAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAGATGGTGTTTACCAGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp TCTCCCCGACAAAGAGGGACTCTGTCACCTCCTGACTaGACCCTTCATCGCTTGGGAAGCTCCCATCACTGG +
Preference number: 6 (lower is better)
Translates to: SPRQRGTLSPPD*TLHRLGSSHHW
Trigger: CCAGTGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp TCTCCAACAGCAATAGCCACAATCCGGCCGGGCTCCTaGGCTCTCAAAAACTCCTGCAGCCTCCTGCTCTCA +
Preference number: 6 (lower is better)
Translates to: SPTAIATIRPGS*ALKNSCSLLLS
Trigger: TGAGAGCAGGAGGCTGCAGGAGTTTTTGAGAGCTCAGGAGCCCGGCCGGATTGTGGCTATTGCTGTTGGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp CTACTCTCCCCGACAAAGAGGGACTCTGTCACCTCCTaGCTGGACCCTTCATCGCTTGGGAAGCTCCCATCA +
Preference number: 6 (lower is better)
Translates to: LLSPTKRDSVTS*LDPSSLGKLPS
Trigger: TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS GCA 72 bp AAGCTGGTTATGGCGAAGCAGATGAAGGTGTTCTTGTaGCTCTTCCGCTTTCGGCTCTCGCTCGGAGTCCGC +
Preference number: 6 (lower is better)
Translates to: KLVMAKQMKVFL*LFRFRLSLGVR
Trigger: GCGGACTCCGAGCGAGAGCCGAAAGCGGAAGAGGCACAAGAACACCTTCATCTGCTTCGCCATAACCAGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS GCA 72 bp CCTGCTGTAACAGGTCAAGGTCTCTTCTGTGGACACTaGCGGTCCGGGAGCACCCATATTCCTCCATCTGCA +
Preference number: 6 (lower is better)
Translates to: PAVTGQGLFCGH*RSGSTHIPPSA
Trigger: TGCAGATGGAGGAATATGGGTGCTCCCGGACCGGCAGTGTCCACAGAAGAGACCTTGACCTGTTACAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp ATGACAACAGGCTGGTACTGTGGAGAGATGGCCCTCTaGTTGATACCCCGAAGCACCATTGGGTGGGATGGG +
Preference number: 6 (lower is better)
Translates to: MTTGWYCGEMAL*LIPRSTIGWDG
Trigger: CCCATCCCACCCAATGGTGCTTCGGGGTATCAACCAGAGGGCCATCTCTCCACAGTACCAGCCTGTTGTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 90 bp ACAAAGAACGAGAAGCTGGTTATGGCGAAGCAGATGAAGGTGTTCTaGTGCCTCTTCCGCTTTCGGCTCTCGCTCGGAGTCCGCTGCTCC +
Preference number: 6 (lower is better)
Translates to: TKNEKLVMAKQMKVF*CLFRFRLSLGVRCS
Trigger: GGAGCAGCGGACTCCGAGCGAGAGCCGAAAGCGGAAGAGGCACAAGAACACCTTCATCTGCTTCGCCATAACCAGCTTCTCGTTCTTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CAA 90 bp CCCAACCGATCCTGGATCATCTGGATTGTTCCCTGTAACAGGCTCTaGACTGCTGAGTCTCCAACAGCAATAGCCACAATCCGGCCGGGC +
Preference number: 6 (lower is better)
Translates to: PNRSWIIWIVPCNRL*TAESPTAIATIRPG
Trigger: GCCCGGCCGGATTGTGGCTATTGCTGTTGGAGACTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 90 bp CGACAAAGAGGGACTCTGTCACCTCCTGACTGGACCCTTCATCGCTaGGGAAGCTCCCATCACTGGCAAAGGTCAGCCCCTTTCCGTTAT +
Preference number: 6 (lower is better)
Translates to: RQRGTLSPPDWTLHR*GSSHHWQRSAPFRY
Trigger: ATAACGGAAAGGGGCTGACCTTTGCCAGTGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 90 bp TCCAGCATGACAACAGGCTGGTACTGTGGAGAGATGGCCCTCTGGTaGATACCCCGAAGCACCATTGGGTGGGATGGGTATTCATCCCGT +
Preference number: 6 (lower is better)
Translates to: SSMTTGWYCGEMALW*IPRSTIGWDGYSSR
Trigger: ACGGGATGAATACCCATCCCACCCAATGGTGCTTCGGGGTATCAACCAGAGGGCCATCTCTCCACAGTACCAGCCTGTTGTCATGCTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp GCACAGGGACGTAGTTTCCAAACACTCCATCACGCATaGCGGTGCACATGGAGCTGTTCCTGTCCGTTGGGA +
Preference number: 6 (lower is better)
Translates to: AQGRSFQTLHHA*RCTWSCSCPLG
Trigger: TCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp GGGAATGTCCTGTTCCTGGGTAGCGTCCGAGGCTTCTaGTCGATTCCCCCTGTGCCCATGTACTTGTTTTGG +
Preference number: 6 (lower is better)
Translates to: GNVLFLGSVRGF*SIPPVPMYLFW
Trigger: CCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAGGACATTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp CAACAGGCTGGTACTGTGGAGAGATGGCCCTCTGGTTaGTACCCCGAAGCACCATTGGGTGGGATGGGTATT +
Preference number: 6 (lower is better)
Translates to: QQAGTVERWPSG*YPEAPLGGMGI
Trigger: AATACCCATCCCACCCAATGGTGCTTCGGGGTATCAACCAGAGGGCCATCTCTCCACAGTACCAGCCTGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp GGCAGCGGAGAAGAGTTAGCTCCTCTGCTTGGTACATaGAATAGTCGGTGCTGGCCACCACAATTCGGTCTC +
Preference number: 6 (lower is better)
Translates to: GSGEELAPLLGT*NSRCWPPQFGL
Trigger: GAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp AAAAGCAATGAGCCTGTCGATGATGGCTGCAACGCGTaGCTTCTCAGGGTCTGCATCCTGATGGGGCCGAAA +
Preference number: 6 (lower is better)
Translates to: KSNEPVDDGCNA*LLRVCILMGPK
Trigger: TTTCGGCCCCATCAGGATGCAGACCCTGAGAAGCCACGCGTTGCAGCCATCATCGACAGGCTCATTGCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp TTCAAAGCCTGCTGTAACAGGTCAAGGTCTCTTCTGTaGACACTGCCGGTCCGGGAGCACCCATATTCCTCC +
Preference number: 6 (lower is better)
Translates to: FKACCNRSRSLL*TLPVREHPYSS
Trigger: GGAGGAATATGGGTGCTCCCGGACCGGCAGTGTCCACAGAAGAGACCTTGACCTGTTACAGCAGGCTTTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 72 bp ACAACAGGCTGGTACTGTGGAGAGATGGCCCTCTGGTaGATACCCCGAAGCACCATTGGGTGGGATGGGTAT +
Preference number: 6 (lower is better)
Translates to: TTGWYCGEMALW*IPRSTIGWDGY
Trigger: ATACCCATCCCACCCAATGGTGCTTCGGGGTATCAACCAGAGGGCCATCTCTCCACAGTACCAGCCTGTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp AAGCTTCACTCCATCCGCAATGTCCACCCGGAAGCCTaGGAGGGAGATTCCTTGACTCCATTCACTGTAGGC +
Preference number: 6 (lower is better)
Translates to: KLHSIRNVHPEA*EGDSLTPFTVG
Trigger: GCCTACAGTGAATGGAGTCAAGGAATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp GCCCTGCTCATCGGGACTGGTGAACAGCTTCGTCCATaGCGGTGCGAAGTTTCCGCTGAATCCCAAAAATAC +
Preference number: 6 (lower is better)
Translates to: ALLIGTGEQLRP*RCEVSAESQKY
Trigger: GTATTTTTGGGATTCAGCGGAAACTTCGCACCGTCATGGACGAAGCTGTTCACCAGTCCCGATGAGCAGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp TTAGCTCCTCTGCTTGGTACATGGAATAGTCGGTGCTaGCCACCACAATTCGGTCTCCAGCTTCCCAAGTGC +
Preference number: 6 (lower is better)
Translates to: LAPLLGTWNSRC*PPQFGLQLPKC
Trigger: GCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 90 bp CCAGCATCCTGTGAGCCTGCAGCTGCGTTATTGATCAGGTGGTTGTaGGGGTGGGCAATCCAGAAAGTTGAAACAGCCATGCAGTCTGTG +
Preference number: 6 (lower is better)
Translates to: PASCEPAAALLIRWL*GWAIQKVETAMQSV
Trigger: CACAGACTGCATGGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAGGATGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 90 bp CGTCCGAGGCTTCTGATCGATTCCCCCTGTGCCCATGTACTTGTTTaGGCCACCTTGAAAGCCGTAATTCCTACTCTCCCCGACAAAGAG +
Preference number: 6 (lower is better)
Translates to: RPRLLIDSPCAHVLV*ATLKAVIPTLPDKE
Trigger: CTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp GAAGTCCAACCTCAGCTCTCATGTCTATCCCGTCTATaGTCTCACCGACGTGCAGGTACTGGGGGATCTCTT +
Preference number: 6 (lower is better)
Translates to: EVQPQLSCLSRL*SHRRAGTGGSL
Trigger: AAGAGATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp GGTAACAGAGGCCAACCCGGATCCAGTCATCCTTGTTaGAGTTCACGAGGTACAAGAAAGTGGTTCGTGGCG +
Preference number: 6 (lower is better)
Translates to: GNRGQPGSSHPC*SSRGTRKWFVA
Trigger: CGCCACGAACCACTTTCTTGTACCTCGTGAACTTCAACAAGGATGACTGGATCCGGGTTGGCCTCTGTTACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp AAACCTTGCACTGTTATCCAGGCAGAGGTACTCCCTTaGGTCAGATGCACTGGCGTTGGTCGTTTTGACACC +
Preference number: 6 (lower is better)
Translates to: KPCTVIQAEVLP*VRCTGVGRFDT
Trigger: GGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 90 bp GAGTCCACTGTTGCATCTGAGGTCAGGCGGAACAAATCCCCCTCCTaGATAACAATGTGCTTCGCAGAATCTTGTCCTGGATCCCAGTTC +
Preference number: 6 (lower is better)
Translates to: ESTVASEVRRNKSPS*ITMCFAESCPGSQF
Trigger: GAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAACAGTGGACTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CAA 90 bp ATTCCAGCATCCTGTGAGCCTGCAGCTGCGTTATTGATCAGGTGGTaGTTGGGGTGGGCAATCCAGAAAGTTGAAACAGCCATGCAGTCT +
Preference number: 6 (lower is better)
Translates to: IPASCEPAAALLIRW*LGWAIQKVETAMQS
Trigger: AGACTGCATGGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAGGATGCTGGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp CCACAAAGAACGAGAAGCTGGTTATGGCGAAGCAGATaGAGGTGTTCTTGTGCCTCTTCCGCTTTCGGCTCT +
Preference number: 6 (lower is better)
Translates to: PQRTRSWLWRSR*RCSCASSAFGS
Trigger: AGAGCCGAAAGCGGAAGAGGCACAAGAACACCTTCATCTGCTTCGCCATAACCAGCTTCTCGTTCTTTGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS TCA 72 bp GGATGGATCTCCTCGCTGAATTTCTGCTTTCCCAGGTaGCTGGAATCGTACAGGGAGGTAGCTTTTGTGAGG +
Preference number: 6 (lower is better)
Translates to: GWISSLNFCFPR*LESYREVAFVR
Trigger: CCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS GCA 72 bp GTCAGGCGGAACAAATCCCCCTCCTTGATAACAATGTaGTTCGCAGAATCTTGTCCTGGATCCCAGTTCCTG +
Preference number: 6 (lower is better)
Translates to: VRRNKSPSLITM*FAESCPGSQFL
Trigger: CAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CCA 72 bp CCCAGACCTTGGATCAGTTTACTCCCCAACCGATCCTaGATCATCTGGATTGTTCCCTGTAACAGGCTCTTG +
Preference number: 6 (lower is better)
Translates to: PRPWISLLPNRS*IIWIVPCNRLL
Trigger: CAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCAAGGTCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp AAAGCTGTGATGAACAGACAGGCCATCCACAGACGCTaGCTGGCTGTACCCTCCTTTAGAATCTACATCTCC +
Preference number: 6 (lower is better)
Translates to: KAVMNRQAIHRR*LAVPSFRIYIS
Trigger: GGAGATGTAGATTCTAAAGGAGGGTACAGCCAGCCAGCGTCTGTGGATGGCCTGTCTGTTCATCACAGCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp CCTGCAGCTGCGTTATTGATCAGGTGGTTGTTGGGGTaGGCAATCCAGAAAGTTGAAACAGCCATGCAGTCT +
Preference number: 6 (lower is better)
Translates to: PAAALLIRWLLG*AIQKVETAMQS
Trigger: AGACTGCATGGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp GCATCCTGTGAGCCTGCAGCTGCGTTATTGATCAGGTaGTTGTTGGGGTGGGCAATCCAGAAAGTTGAAACA +
Preference number: 6 (lower is better)
Translates to: ASCEPAAALLIR*LLGWAIQKVET
Trigger: TGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAGGATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp CTTGTTGAAGTTCACGAGGTACAAGAAAGTGGTTCGTaGCGCTGGACCATTCCAGTGGATGGTGTAGCCCTT +
Preference number: 6 (lower is better)
Translates to: LVEVHEVQESGS*RWTIPVDGVAL
Trigger: AAGGGCTACACCATCCACTGGAATGGTCCAGCGCCACGAACCACTTTCTTGTACCTCGTGAACTTCAACAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 72 bp TGTGAGCCTGCAGCTGCGTTATTGATCAGGTGGTTGTaGGGGTGGGCAATCCAGAAAGTTGAAACAGCCATG +
Preference number: 6 (lower is better)
Translates to: CEPAAALLIRWL*GWAIQKVETAM
Trigger: CATGGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 72 bp CATATTCCAGCATCCTGTGAGCCTGCAGCTGCGTTATaGATCAGGTGGTTGTTGGGGTGGGCAATCCAGAAA +
Preference number: 6 (lower is better)
Translates to: HIPASCEPAAAL*IRWLLGWAIQK
Trigger: TTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAGGATGCTGGAATATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 90 bp GCGGAACAAATCCCCCTCCTTGATAACAATGTGCTTCGCAGAATCTaGTCCTGGATCCCAGTTCCTGAGACGAGGGTTTTGATCTGGACA +
Preference number: 6 (lower is better)
Translates to: AEQIPLLDNNVLRRI*SWIPVPETRVLIWT
Trigger: TGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CAA 90 bp GACGGTGCGAAGTTTCCGCTGAATCCCAAAAATACGACACTACCTTaGCTGTACAGATGTGCTGGCTTGGCCAGTCCCAGAACTGCTAAT +
Preference number: 6 (lower is better)
Translates to: DGAKFPLNPKNTTLP*LYRCAGLASPRTAN
Trigger: ATTAGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAGGTAGTGTCGTATTTTTGGGATTCAGCGGAAACTTCGCACCGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp TCACAGATTCATTGCAGGAAGAACTTCCACCATCGATaGCACCAACTAAGGCCCAAGCTTGCCTGTAGCCCA +
Preference number: 6 (lower is better)
Translates to: SQIHCRKNFHHR*HQLRPKLACSP
Trigger: TGGGCTACAGGCAAGCTTGGGCCTTAGTTGGTGTCATCGATGGTGGAAGTTCTTCCTGCAATGAATCTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp CGTTATTCCTGGGTGTTGTCTGCCAGGAATTCTTCATaGGGAAGCCAATTGCACTGCTGTACCTGTCTGGAG +
Preference number: 6 (lower is better)
Translates to: RYSWVLSARNSS*GSQLHCCTCLE
Trigger: CTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS GCA 72 bp ATTGTTCTTAAAAGCAATGAGCCTGTCGATGATGGCTaGAACGCGTGGCTTCTCAGGGTCTGCATCCTGATG +
Preference number: 6 (lower is better)
Translates to: IVLKSNEPVDDG*NAWLLRVCILM
Trigger: CATCAGGATGCAGACCCTGAGAAGCCACGCGTTGCAGCCATCATCGACAGGCTCATTGCTTTTAAGAACAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp TGGATCAGTTTACTCCCCAACCGATCCTGGATCATCTaGATTGTTCCCTGTAACAGGCTCTTGACTGCTGAG +
Preference number: 6 (lower is better)
Translates to: WISLLPNRSWII*IVPCNRLLTAE
Trigger: CTCAGCAGTCAAGAGCCTGTTACAGGGAACAATCCAGATGATCCAGGATCGGTTGGGGAGTAAACTGATCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 72 bp ATCCCCCTCCTTGATAACAATGTGCTTCGCAGAATCTaGTCCTGGATCCCAGTTCCTGAGACGAGGGTTTTG +
Preference number: 6 (lower is better)
Translates to: IPLLDNNVLRRI*SWIPVPETRVL
Trigger: CAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CAA 72 bp GTTGCATCTGAGGTCAGGCGGAACAAATCCCCCTCCTaGATAACAATGTGCTTCGCAGAATCTTGTCCTGGA +
Preference number: 6 (lower is better)
Translates to: VASEVRRNKSPS*ITMCFAESCPG
Trigger: TCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAGGGGGATTTGTTCCGCCTGACCTCAGATGCAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CAA 72 bp AGGCAGAGGTACTCCCTTGGGTCAGATGCACTGGCGTaGGTCGTTTTGACACCTTTGTCCACAAATAAACCA +
Preference number: 6 (lower is better)
Translates to: RQRYSLGSDALA*VVLTPLSTNKP
Trigger: TGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp TGTGCTTCGCAGAATCTTGTCCTGGATCCCAGTTCCTaGGACGAGGGTTTTGATCTGGACAATTCTCATCTG +
Preference number: 6 (lower is better)
Translates to: CASQNLVLDPSS*DEGFDLDNSHL
Trigger: CAGATGAGAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS TCA 72 bp GTCAGCCCCTTTCCGTTATCTGCAAATGCTGAATTCTaGACAATAATATCTCCTCCTCTGACCCAGGCTCCG +
Preference number: 6 (lower is better)
Translates to: VSPFPLSANAEF*TIISPPLTQAP
Trigger: CGGAGCCTGGGTCAGAGGAGGAGATATTATTGTTCAGAATTCAGCATTTGCAGATAACGGAAAGGGGCTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS GCA 72 bp GGTAATTGTCGCTTTGGATCTATAGCGGCATTTTTCTaGTCCAATATGAAGCGCCCCACCATCCTGGATCAG +
Preference number: 6 (lower is better)
Translates to: GNCRFGSIAAFF*SNMKRPTILDQ
Trigger: CTGATCCAGGATGGTGGGGCGCTTCATATTGGAGCAGAAAAATGCCGCTATAGATCCAAAGCGACAATTACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp CTCCTTGATAACAATGTGCTTCGCAGAATCTTGTCCTaGATCCCAGTTCCTGAGACGAGGGTTTTGATCTGG +
Preference number: 6 (lower is better)
Translates to: LLDNNVLRRILS*IPVPETRVLIW
Trigger: CCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGATTCTGCGAAGCACATTGTTATCAAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS CCA 72 bp GTGTCCTTGTATCCTGTCACAGAGCCATCAATGTCATaGAAGATGGAGTTCTTATCGCCGTCCAGCTCACAA +
Preference number: 6 (lower is better)
Translates to: VSLYPVTEPSMS*KMEFLSPSSSQ
Trigger: TTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACAC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 72 bp AAGTTTCCGCTGAATCCCAAAAATACGACACTACCTTaGCTGTACAGATGTGCTGGCTTGGCCAGTCCCAGA +
Preference number: 6 (lower is better)
Translates to: KFPLNPKNTTLP*LYRCAGLASPR
Trigger: TCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAGGTAGTGTCGTATTTTTGGGATTCAGCGGAAACTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 90 bp CTGTTATCCAGGCAGAGGTACTCCCTTGGGTCAGATGCACTGGCGTaGGTCGTTTTGACACCTTTGTCCACAAATAAACCAGCCTTAAAA +
Preference number: 6 (lower is better)
Translates to: LLSRQRYSLGSDALA*VVLTPLSTNKPALK
Trigger: TTTTAAGGCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp TCTTGTCCTGGATCCCAGTTCCTGAGACGAGGGTTTTaGTCTGGACAATTCTCATCTGGAGCGTATTTTGAG +
Preference number: 6 (lower is better)
Translates to: SCPGSQFLRRGF*SGQFSSGAYFE
Trigger: CTCAAAATACGCTCCAGATGAGAATTGTCCAGATCAAAACCCTCGTCTCAGGAACTGGGATCCAGGACAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS GCA 72 bp TGTTGTCTGCCAGGAATTCTTCATGAGGAAGCCAATTaGACTGCTGTACCTGTCTGGAGTTGGCACATACTT +
Preference number: 6 (lower is better)
Translates to: CCLPGILHEEAN*TAVPVWSWHIL
Trigger: AAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp TGTATCCTGTCACAGAGCCATCAATGTCATGGAAGATaGAGTTCTTATCGCCGTCCAGCTCACAATCCTCAA +
Preference number: 6 (lower is better)
Translates to: CILSQSHQCHGR*SSYRRPAHNPQ
Trigger: TTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp GATCACTGCATTCCACTTAGTAACATTGACACAGTTTaGATGGCGGATCAGGTAGTTGTCCATCCTTCCCAC +
Preference number: 6 (lower is better)
Translates to: DHCIPLSNIDTV*MADQVVVHPSH
Trigger: GTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp TCTCATCTGGAGCGTATTTTGAGGATATTCCCAAAATaGCCGCAAGCGCCACAAAGAACGAGAAGCTGGTTA +
Preference number: 6 (lower is better)
Translates to: SHLERILRIFPK*PQAPQRTRSWL
Trigger: TAACCAGCTTCTCGTTCTTTGTGGCGCTTGCGGTCATTTTGGGAATATCCTCAAAATACGCTCCAGATGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2
CDS TCA 72 bp AGGAGAGTGCCCGGCTTGGTAAGAAGCCCCAAGTTATaGTACAAAATATTTCGCTGTTCAACACCATCTTCC +
Preference number: 6 (lower is better)
Translates to: RRVPGLVRSPKL*YKIFRCSTPSS
Trigger: GGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp GTACCATTGACGGAAATAATGGATGGATCTCCTCGCTaGATTTCTGCTTTCCCAGGTGACTGGAATCGTACA +
Preference number: 6 (lower is better)
Translates to: VPLTEIMDGSPR*ISAFPGDWNRT
Trigger: TGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCCGTCAATGGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS GCA 72 bp AACTTCACAAGGGAAACGTTATTCCTGGGTGTTGTCTaGCAGGAATTCTTCATGAGGAAGCCAATTGCACTG +
Preference number: 6 (lower is better)
Translates to: NFTRETLFLGVV*QEFFMRKPIAL
Trigger: CAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 72 bp TACTCCCTTGGGTCAGATGCACTGGCGTTGGTCGTTTaGACACCTTTGTCCACAAATAAACCAGCCTTAAAA +
Preference number: 6 (lower is better)
Translates to: YSLGSDALALVV*TPLSTNKPALK
Trigger: TTTTAAGGCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CAA 72 bp ATAATATCTCCTCCTCTGACCCAGGCTCCGTTGTCATaGTTCTTAAAAGCAATGAGCCTGTCGATGATGGCT +
Preference number: 6 (lower is better)
Translates to: IISPPLTQAPLS*FLKAMSLSMMA
Trigger: AGCCATCATCGACAGGCTCATTGCTTTTAAGAACAATGACAACGGAGCCTGGGTCAGAGGAGGAGATATTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS GCA 72 bp TTTGGCCATGCAGTTACTGATATCTTTGGAGTCTGTTaGTGCCTGAATCTTGACTCTTTCACATCCCTGAGA +
Preference number: 6 (lower is better)
Translates to: FGHAVTDIFGVC*CLNLDSFTSLR
Trigger: TCTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAACTGCATGGCCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp ATAATCGAAGAACTGGCAGTGATTTTCTGCATAGCATaGATCCTCCATCTCTCCTTGGATCACAATGTTGCG +
Preference number: 6 (lower is better)
Translates to: IIEELAVIFCIA*ILHLSLDHNVA
Trigger: CGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS TCA 72 bp TTTCGCTGTTCAACACCATCTTCCAAAAAGAAGCAATaGCCTAGTGTGTCGAAGCCAATGGTGTCTTTGATT +
Preference number: 6 (lower is better)
Translates to: FRCSTPSSKKKQ*PSVSKPMVSLI
Trigger: AATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS GCA 72 bp AGTCCCAGAACTGCTAATGAATCCGAGATATTCAGCTaGTTAATTTCTCCTCTTGTGCTCAACAGAACGATT +
Preference number: 6 (lower is better)
Translates to: SPRTANESEIFS*LISPLVLNRTI
Trigger: AATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
CDS CCA 72 bp GGATCAGGATGTATCGAGTCCTCAAAGTTATATTCTTaGATCCATCTTTATCATCCCCAAACACAAGCAGTC +
Preference number: 6 (lower is better)
Translates to: GSGCIESSKLYS*IHLYHPQTQAV
Trigger: GACTGCTTGTGTTTGGGGATGATAAAGATGGATCCAAGAATATAACTTTGAGGACTCGATACATCCTGATCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025663.8
ENSMUST00000096194.9
ENSMUST00000237802.2