RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CELF2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002107

Ensembl transcript IDs: ENSMUST00000002176.13, ENSMUST00000100429.11, ENSMUST00000114923.3, ENSMUST00000114924.10, ENSMUST00000114927.9, ENSMUST00000114934.11, ENSMUST00000123142.3, ENSMUST00000137733.9, ENSMUST00000142941.8, ENSMUST00000150624.9, ENSMUST00000170438.8, ENSMUST00000182404.8, ENSMUST00000182706.8, ENSMUST00000182851.8, ENSMUST00000182879.8, ENSMUST00000183091.8, ENSMUST00000183209.8, ENSMUST00000183984.8

Found 1027 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGGGTGGGCAGCCAGAGCTTTCGCTGACACCAGCTCAGGTGTCCTaGCACGGGCGAGAAGAGAAGGGAGCAGATAGCCATGGGAAATAC +
Preference number: 1 (lower is better)
Translates to: EGGQPELSLTPAQVS*HGREEKGADSHGKY
Trigger: GTATTTCCCATGGCTATCTGCTCCCTTCTCTTCTCGCCCGTGCCAGGACACCTGAGCTGGTGTCAGCGAAAGCTCTGGCTGCCCACCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR TCA 90 bp GCTGTACAAAGTGGGCAGTGCAGCTGCCGCATACTGCTGAATTCCTaGGTAGGCCTGGGTCAGGGCGTCCATGGTGCCAGCCGTACCATT +
Preference number: 1 (lower is better)
Translates to: AVQSGQCSCRILLNS*VGLGQGVHGASRTI
Trigger: AATGGTACGGCTGGCACCATGGACGCCCTGACCCAGGCCTACTCAGGAATTCAGCAGTATGCGGCAGCTGCACTGCCCACTTTGTACAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
3UTR GCA 90 bp CTTGGTCGCCTGCAAAATCAGAAACCGAGCTCAACAGAAAGTACCTaGCTGACCCGAGCCTCTGCGGGGGCCGCAGGTGGGTTAAGAGGA +
Preference number: 1 (lower is better)
Translates to: LGRLQNQKPSSTEST*LTRASAGAAGGLRG
Trigger: TCCTCTTAACCCACCTGCGGCCCCCGCAGAGGCTCGGGTCAGGCAGGTACTTTCTGTTGAGCTCGGTTTCTGATTTTGCAGGCGACCAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR CCA 90 bp AGGGAGCTGAGACCAGAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTaGGTGTGTGTTTGGACTGTAGGCATGACATTGGGGTCTGTCAGA +
Preference number: 1 (lower is better)
Translates to: RELRPEACRVCFPRG*VCVWTVGMTLGSVR
Trigger: TCTGACAGACCCCAATGTCATGCCTACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTCTGGTCTCAGCTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR CCA 90 bp CCAGAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTaGACTGTAGGCATGACATTGGGGTCTGTCAGAACAAGACATCTG +
Preference number: 1 (lower is better)
Translates to: PEACRVCFPRGWVCV*TVGMTLGSVRTRHL
Trigger: CAGATGTCTTGTTCTGACAGACCCCAATGTCATGCCTACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR TCA 90 bp AGTAGCACAAGCCAAGGAACTAGAACCCCTGCGGTGAAGGAAAGATaGACTTGTCACACCGTGGAGGTGCCATCTGATCAGAGTTCTCTG +
Preference number: 1 (lower is better)
Translates to: SSTSQGTRTPAVKER*TCHTVEVPSDQSSL
Trigger: CAGAGAACTCTGATCAGATGGCACCTCCACGGTGTGACAAGTTCATCTTTCCTTCACCGCAGGGGTTCTAGTTCCTTGGCTTGTGCTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR TCA 90 bp AATGATTCCAGAGTAGCACAAGCCAAGGAACTAGAACCCCTGCGGTaGAGGAAAGATGAACTTGTCACACCGTGGAGGTGCCATCTGATC +
Preference number: 1 (lower is better)
Translates to: NDSRVAQAKELEPLR*RKDELVTPWRCHLI
Trigger: GATCAGATGGCACCTCCACGGTGTGACAAGTTCATCTTTCCTTCACCGCAGGGGTTCTAGTTCCTTGGCTTGTGCTACTCTGGAATCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR CCA 90 bp CAGGGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCTaGGGAGAAAACAAGGGAGAGTCAGAAGTTACACAGAGTCTACGC +
Preference number: 1 (lower is better)
Translates to: QGHARQTMTNGHEDV*GENKGESEVTQSLR
Trigger: GCGTAGACTCTGTGTAACTTCTGACTCTCCCTTGTTTTCTCCCCAGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR CCA 90 bp AATGGAGGCCTTATTGTAAAAATAACCGTCTCTCTTGGTAAAAGTTaGCATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTG +
Preference number: 1 (lower is better)
Translates to: NGGLIVKITVSLGKS*HRGPSSAFPVQNRL
Trigger: CAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTACAATAAGGCCTCCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
3UTR GCA 90 bp AGAAGTTACACAGAGTCTACGCAGCAGCAACGTCACTTTCAAGGGTaGGGGAGAAAACTAATGCAAATCTTGGGTCTTCAGGGAGTCTAT +
Preference number: 1 (lower is better)
Translates to: RSYTESTQQQRHFQG*GRKLMQILGLQGVY
Trigger: ATAGACTCCCTGAAGACCCAAGATTTGCATTAGTTTTCTCCCGCACCCTTGAAAGTGACGTTGCTGCTGCGTAGACTCTGTGTAACTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR TCA 90 bp AGGAGAACCAAATATGATGTGAGGTCAGAAAGACATCAGAAACAATaGCGGGACGATGAAACTGTTTTTGAGACGCCACAGGGACATGCT +
Preference number: 1 (lower is better)
Translates to: RRTKYDVRSERHQKQ*RDDETVFETPQGHA
Trigger: AGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGTCCCGTCATTGTTTCTGATGTCTTTCTGACCTCACATCATATTTGGTTCTCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR CCA 90 bp TGTCAGAACAAGACATCTGCTCATATGAAGCCAGACTCAGGAATATaGCACTTTCGAGAGCAACAGCAGGAACTAGTCCTAGTATTTGGT +
Preference number: 1 (lower is better)
Translates to: CQNKTSAHMKPDSGI*HFREQQQELVLVFG
Trigger: ACCAAATACTAGGACTAGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTCATATGAGCAGATGTCTTGTTCTGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR TCA 90 bp GTTAAAAGTTCAGGACTTTCTCACCTTAGAGGTTTCCAGATATTATaGAGAGAATACATTGTGAGGGCTGCCGTCACAGCATTGACGTGG +
Preference number: 1 (lower is better)
Translates to: VKSSGLSHLRGFQIL*REYIVRAAVTALTW
Trigger: CCACGTCAATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTCATAATATCTGGAAACCTCTAAGGTGAGAAAGTCCTGAACTTTTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR TCA 90 bp ACGACAAGAGGGAAAAGCATGAACTTTAGGTCTAGGGTTCAACGGTaGAAAAAGCCCATTCCTAGAACAATTCCTCTGGAGACTACTTCA +
Preference number: 1 (lower is better)
Translates to: TTRGKSMNFRSRVQR*KKPIPRTIPLETTS
Trigger: TGAAGTAGTCTCCAGAGGAATTGTTCTAGGAATGGGCTTTTTTCACCGTTGAACCCTAGACCTAAAGTTCATGCTTTTCCCTCTTGTCGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR GCA 90 bp TCTTCGGTAGAAAAGCCCAGTTTGTCTTTCAGTGCGCGAACATCATaGCCTGTGCTGAATGGTGGTCATATTAGGATTTCAAAAAGAAAC +
Preference number: 1 (lower is better)
Translates to: SSVEKPSLSFSARTS*PVLNGGHIRISKRN
Trigger: GTTTCTTTTTGAAATCCTAATATGACCACCATTCAGCACAGGGCATGATGTTCGCGCACTGAAAGACAAACTGGGCTTTTCTACCGAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR TCA 90 bp AAAAGCCCAGTTTGTCTTTCAGTGCGCGAACATCATGCCCTGTGCTaGATGGTGGTCATATTAGGATTTCAAAAAGAAACACATCTTGGA +
Preference number: 1 (lower is better)
Translates to: KSPVCLSVREHHALC*MVVILGFQKETHLG
Trigger: TCCAAGATGTGTTTCTTTTTGAAATCCTAATATGACCACCATTCAGCACAGGGCATGATGTTCGCGCACTGAAAGACAAACTGGGCTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR TCA 90 bp AGGTCAAAACTAGATCAAAGGTCAGTAGGAGAACCAAATATGATGTaGGGTCAGAAAGACATCAGAAACAATGACGGGACGATGAAACTG +
Preference number: 1 (lower is better)
Translates to: RSKLDQRSVGEPNMM*GQKDIRNNDGTMKL
Trigger: CAGTTTCATCGTCCCGTCATTGTTTCTGATGTCTTTCTGACCTCACATCATATTTGGTTCTCCTACTGACCTTTGATCTAGTTTTGACCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR TCA 90 bp ATACGTGCAACAGTGAGGTTGTGTAGATGTGTCACCAACACAGAATaGTTACCAACAATACAACACGCAGAGAGAGAAACAAGTATTAGG +
Preference number: 1 (lower is better)
Translates to: IRATVRLCRCVTNTE*LPTIQHAERETSIR
Trigger: CCTAATACTTGTTTCTCTCTCTGCGTGTTGTATTGTTGGTAATCATTCTGTGTTGGTGACACATCTACACAACCTCACTGTTGCACGTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR CCA 90 bp GGGATGTGTAGTTTCTTCGTGTCCCAAATCAGATATTCACTTAGGTaGAATCGACTGTATCTTTTTACACAACATAAAGAAAAGAACAGA +
Preference number: 1 (lower is better)
Translates to: GMCSFFVSQIRYSLR*NRLYLFTQHKEKNR
Trigger: TCTGTTCTTTTCTTTATGTTGTGTAAAAAGATACAGTCGATTCCACCTAAGTGAATATCTGATTTGGGACACGAAGAAACTACACATCCC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR TCA 90 bp TATCTTTTTACACAACATAAAGAAAAGAACAGATACGTGCAACAGTaGGGTTGTGTAGATGTGTCACCAACACAGAATGATTACCAACAA +
Preference number: 1 (lower is better)
Translates to: YLFTQHKEKNRYVQQ*GCVDVSPTQNDYQQ
Trigger: TTGTTGGTAATCATTCTGTGTTGGTGACACATCTACACAACCTCACTGTTGCACGTATCTGTTCTTTTCTTTATGTTGTGTAAAAAGATA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp GGGCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGGCTTCTCCCTCTGCTaGGCCACCACATCATCTCTA +
Preference number: 2 (lower is better)
Translates to: GRAGRRVSSPGSALGAPVGFSLC*ATTSSL
Trigger: TAGAGATGATGTGGTGGCCCAGCAGAGGGAGAAGCC...CACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
3UTR-3UTR CCA 90 bp GGGCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGACAAAGAGAATACAGTaGCACAACCGGAGGAGGGGT +
Preference number: 2 (lower is better)
Translates to: GRAGRRVSSPGSALGAPVTKRIQ*HNRRRG
Trigger: ACCCCTCCTCCGGTTGTGCCACTGTATTCTCTTTGT...CACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR GCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGTCGTGGTCCCTCCTCTaGCTTCCCTGTTCAGAACAG +
Preference number: 2 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQSWSLL*LPCSEQ
Trigger: CTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGA...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR GCA 90 bp GGGCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGTTGTGGAGTTTTAAGTaGTTCTCCTGGCTTCTCCCT +
Preference number: 2 (lower is better)
Translates to: GRAGRRVSSPGSALGAPVLWSFK*FSWLLP
Trigger: AGGGAGAAGCCAGGAGAAGCACTTAAAACTCCACAA...CACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
3UTR-3UTR CCA 90 bp GCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCTCTTGGTAAAAGTTaGCATCGTGGTCCCTCCTCT +
Preference number: 2 (lower is better)
Translates to: AGGQEGEFSRQCSRGTSGSLGKS*HRGPSS
Trigger: AGAGGAGGGACCACGATGCCAACTTTTACCAAGAGA...ACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR CCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGACAAAGAGAATACAGTaGCACAACCGGAGGAGGGGT +
Preference number: 2 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQTKRIQ*HNRRRG
Trigger: ACCCCTCCTCCGGTTGTGCCACTGTATTCTCTTTGT...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR GCA 90 bp GGGCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGCTGCACATTAGTGTTTaGTTGCCTTTCACATTCTCA +
Preference number: 2 (lower is better)
Translates to: GRAGRRVSSPGSALGAPVLHISV*LPFTFS
Trigger: TGAGAATGTGAAAGGCAAGCAAACACTAATGTGCAG...CACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
3UTR-3UTR GCA 90 bp CCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGGAGTTCTCCAGGCAGTaGTCTCGGGGCACCAGTGGT +
Preference number: 2 (lower is better)
Translates to: PSSAFPVQNRLACGTYPKEFSRQ*SRGTSG
Trigger: ACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTC...CTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR TCA 90 bp AGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGAGGCCTTTCAGAGGCAACTaGGCAAGCAGGCCCCGCCCT +
Preference number: 2 (lower is better)
Translates to: RRIVLEASVRGRLWMNQRPFRGN*ASRPRP
Trigger: AGGGCGGGGCCTGCTTGCTCAGTTGCCTCTGAAAGG...CCTCTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGTTGTGGAGTTTTAAGTaGTTCTCCTGGCTTCTCCCT +
Preference number: 2 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQLWSFK*FSWLLP
Trigger: AGGGAGAAGCCAGGAGAAGCACTTAAAACTCCACAA...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
3UTR-3UTR GCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTTCCTTCTGGCTGCCTaGAGCACTCTGCTGTTGCAG +
Preference number: 2 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTFLLAA*STLLLQ
Trigger: CTGCAACAGCAGAGTGCTGCAGGCAGCCAGAAGGAA...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
3UTR-3UTR TCA 90 bp CCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGATACTGCTGAATTCCTaGGTAGGCCTGGGTCAGGGC +
Preference number: 2 (lower is better)
Translates to: PSSAFPVQNRLACGTYPKILLNS*VGLGQG
Trigger: GCCCTGACCCAGGCCTACTCAGGAATTCAGCAGTAT...CTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
3UTR-3UTR GCA 90 bp CAGGCCCTGCGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACACCTGGCTTCTCCCTCTaGTGGGCCACCACATCATCT +
Preference number: 2 (lower is better)
Translates to: QALRTLAAFPFDTERGRTPGFSL*WATTSS
Trigger: AGATGATGTGGTGGCCCAGCAGAGGGAGAAGCCAGG...TGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCGCAGGGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp TCTGGCTGCCTGCAGCACTCTGCTGTTGCAGCAAGCTCTGGCTGTACAAAGTGGTCGTGGTCCCTCCTCTaGCTTCCCTGTTCAGAACAG +
Preference number: 2 (lower is better)
Translates to: SGCLQHSAVAASSGCTKWSWSLL*LPCSEQ
Trigger: CTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGA...CCACTTTGTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAGCCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
3UTR-3UTR CCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTCTCTCGGGGCACCAGTaGTTCAGAGTTAGAACTGCA +
Preference number: 2 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTLSGHQ*FRVRTA
Trigger: TGCAGTTCTAACTCTGAACCACTGGTGCCCCGAGAG...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR CCA 90 bp CCCTCTGGACCTTCCTTCTGGCTGCCTGCAGCACTCTGCTGTTGCAGCAAGCTCCTGTTCAGAACAGGCTaGCTTGTGGGACTTACCCTA +
Preference number: 2 (lower is better)
Translates to: PSGPSFWLPAALCCCSKLLFRTG*LVGLTL
Trigger: TAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAG...GAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTCCAGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
3UTR-3UTR TCA 90 bp AGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGAGGAATAGCCCTCAAGGATaGAGGAAGGCCCCGGCAGTG +
Preference number: 2 (lower is better)
Translates to: RRIVLEASVRGRLWMNQRNSPQG*RKAPAV
Trigger: CACTGCCGGGGCCTTCCTTCATCCTTGAGGGCTATT...CCTCTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp AACCAATGTAGTGGGAGGGTGTTTTGTGGAGTTTTAAGTGCTTCTCCTGGCTTCGGGCGGGCAGGAGGGTaGGTTCTCCAGGCAGTGCTC +
Preference number: 2 (lower is better)
Translates to: NQCSGRVFCGVLSASPGFGRAGG*VLQAVL
Trigger: GAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCC...GAAGCCAGGAGAAGCACTTAAAACTCCACAAAACACCCTCCCACTACATTGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
3UTR-3UTR GCA 90 bp CAGGCCCTGCGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACATCAACAGAAAGTACCTaGCTGACCCGAGCCTCTGCG +
Preference number: 2 (lower is better)
Translates to: QALRTLAAFPFDTERGRTSTEST*LTRASA
Trigger: CGCAGAGGCTCGGGTCAGGCAGGTACTTTCTGTTGA...TGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCGCAGGGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp AGTGAGAGGTTTGGCCTAGGGAAAGAGCCACCTTTCTTCTGTTTGGTAGGCCCATCCGGAAACAGGCCCTaGGCACCCTTGCAGCGTTTC +
Preference number: 2 (lower is better)
Translates to: SERFGLGKEPPFFCLVGPSGNRP*APLQRF
Trigger: GAAACGCTGCAAGGGTGCGCAGGGCCTGTTTCCGGA...TGGGCCTACCAAACAGAAGAAAGGTGGCTCTTTCCCTAGGCCAAACCTCTCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp CCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGATCGTGGTCCCTCCTCTaGCTTCCCTGTTCAGAACAG +
Preference number: 2 (lower is better)
Translates to: PPLPSLFRTGWLVGLTLRSWSLL*LPCSEQ
Trigger: CTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGA...TCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
3UTR-3UTR CCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTCTGTTCAGAACAGGCTaGCTTGTGGGACTTACCCTA +
Preference number: 2 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTLFRTG*LVGLTL
Trigger: TAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAG...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
3UTR-3UTR TCA 90 bp GAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTAGGCTGCTATTGTCACCAGTaGCCGGGCAGAATGCCAATC +
Preference number: 2 (lower is better)
Translates to: EACRVCFPRGWVCVWTVGCYCHQ*PGRMPI
Trigger: GATTGGCATTCTGCCCGGTCACTGGTGACAATAGCA...GCCTACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp ACCAGTGACCGGGCAGAATGCCAATCCCTGTGTAATACTTTCAAGTCTGTTTTAGGGCGGGCAGGAGGGTaGGTTCTCCAGGCAGTGCTC +
Preference number: 2 (lower is better)
Translates to: TSDRAECQSLCNTFKSVLGRAGG*VLQAVL
Trigger: GAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCC...TAAAACAGACTTGAAAGTATTACACAGGGATTGGCATTCTGCCCGGTCACTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR GCA 90 bp TCTGGGGAGAAAACAAGGGAGAGTCAGAAGTTACACAGAGTCTACGCAGCAGCAGAGTTCTCCAGGCAGTaGTCTCGGGGCACCAGTGGT +
Preference number: 2 (lower is better)
Translates to: SGEKTRESQKLHRVYAAAEFSRQ*SRGTSG
Trigger: ACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTC...TGCTGCTGCGTAGACTCTGTGTAACTTCTGACTCTCCCTTGTTTTCTCCCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR CCA 90 bp ACCAGAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTGGCTTCTCCCTCTGCTaGGCCACCACATCATCTCTA +
Preference number: 2 (lower is better)
Translates to: TRSLQGVFSQRLGVCLDCGFSLC*ATTSSL
Trigger: TAGAGATGATGTGGTGGCCCAGCAGAGGGAGAAGCC...ACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp GAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTAGGCTTTAAGTGCTTCTCCTaGCTTCTCCCTCTGCTGGGC +
Preference number: 2 (lower is better)
Translates to: EACRVCFPRGWVCVWTVGFKCFS*LLPLLG
Trigger: GCCCAGCAGAGGGAGAAGCCAGGAGAAGCACTTAAA...GCCTACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp GTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTGCCGGGTCAGGGCGTCCATaGTGCCAGCCGTACCATTCG +
Preference number: 2 (lower is better)
Translates to: VKITVSLGKSWHRGPSSAGSGRP*CQPYHS
Trigger: CGAATGGTACGGCTGGCACCATGGACGCCCTGACCC...GGCAGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
3UTR CAA 90 bp CTTGTCACAGCATGGGCAGTGGGGCAGTTCTTCTCTGATCAGGGGTaGGGTACAGTGAGAGCACATCTCCTTCCTATCCTGTGTCTACTG +
Preference number: 2 (lower is better)
Translates to: LVTAWAVGQFFSDQG*GTVRAHLLPILCLL
Trigger: CAGTAGACACAGGATAGGAAGGAGATGTGCTCTCACTGTACCCAACCCCTGATCAGAGAAGAACTGCCCCACTGCCCATGCTGTGACAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp TCGGTAGAAAAGCCCAGTTTGTCTTTCAGTGCGCGAACATCATGCCCTGTGCTGGAAGGAAAAGGGAGCTaGGACCAGAAGCTTGCAGGG +
Preference number: 2 (lower is better)
Translates to: SVEKPSLSFSARTSCPVLEGKGS*DQKLAG
Trigger: CCCTGCAAGCTTCTGGTCTCAGCTCCCTTTTCCTTC...CAGCACAGGGCATGATGTTCGCGCACTGAAAGACAAACTGGGCTTTTCTACCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp GAAAGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGGAACCTCATGCCCAGTaGGAGGTTTGGCCTAGGGAA +
Preference number: 2 (lower is better)
Translates to: ERRIVLEASVRGRLWMNQEPHAQ*EVWPRE
Trigger: TTCCCTAGGCCAAACCTCTCACTGGGCATGAGGTTC...CTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp GAACAAATTTTACCATCCTCTTTCCCAGGCCTTCCCTCCCTGATGCCGCCCATTGAACCTCATGCCCAGTaGGAGGTTTGGCCTAGGGAA +
Preference number: 2 (lower is better)
Translates to: EQILPSSFPGLPSLMPPIEPHAQ*EVWPRE
Trigger: TTCCCTAGGCCAAACCTCTCACTGGGCATGAGGTTC...AATGGGCGGCATCAGGGAGGGAAGGCCTGGGAAAGAGGATGGTAAAATTTGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp ATTGTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTGGGCGGGCAGGAGGGTaGGTTCTCCAGGCAGTGCTC +
Preference number: 2 (lower is better)
Translates to: IVKITVSLGKSWHRGPSSGRAGG*VLQAVL
Trigger: GAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCC...AGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTACAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR TCA 90 bp CAAACAAAGAGAATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACGGGCGGGCAGGAGGGTaGGTTCTCCAGGCAGTGCTC +
Preference number: 2 (lower is better)
Translates to: QTKRIQWHNRRRGLLNKNGRAGG*VLQAVL
Trigger: GAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCC...GTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTATTCTCTTTGTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR GCA 90 bp ATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACAAGGTAGCCCAGGAGTTCTCCAGGCAGTaGTCTCGGGGCACCAGTGGT +
Preference number: 2 (lower is better)
Translates to: IQWHNRRRGLLNKNKVAQEFSRQ*SRGTSG
Trigger: ACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTC...CTGGGCTACCTTGTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR CCA 90 bp AGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGAGGCTCTCGGGGCACCAGTaGTTCAGAGTTAGAACTGCA +
Preference number: 2 (lower is better)
Translates to: RRIVLEASVRGRLWMNQRLSGHQ*FRVRTA
Trigger: TGCAGTTCTAACTCTGAACCACTGGTGCCCCGAGAG...CCTCTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTGGGAGGGTGTTTTGTaGAGTTTTAAGTGCTTCTCC +
Preference number: 2 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTWEGVL*SFKCFS
Trigger: GGAGAAGCACTTAAAACTCCACAAAACACCCTCCCA...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR CCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTTAATTATGGCAGATTaGGTGGGGTGTGAGTGGAAG +
Preference number: 2 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTLIMAD*VGCEWK
Trigger: CTTCCACTCACACCCCACCCAATCTGCCATAATTAA...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
3UTR CAA 90 bp ATTCACTTATCAGGAACGATGCATGGTCCGCTTGTGTTCACTGCATaGCCTAGCCTGCTAGCTACGAGCCTGCAGATCACACCCCATTGC +
Preference number: 2 (lower is better)
Translates to: IHLSGTMHGPLVFTA*PSLLATSLQITPHC
Trigger: GCAATGGGGTGTGATCTGCAGGCTCGTAGCTAGCAGGCTAGGCAATGCAGTGAACACAAGCGGACCATGCATCGTTCCTGATAAGTGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp GATCAGGGGTTGGGTACAGTGAGAGCACATCTCCTTCCTATCCTGTGTCTACTGGCTTCCATCAGCCAGTaGATGCTGACAGTTGTCTGG +
Preference number: 2 (lower is better)
Translates to: DQGLGTVRAHLLPILCLLASISQ*MLTVVW
Trigger: CCAGACAACTGTCAGCATTCACTGGCTGATGGAAGC...CAGTAGACACAGGATAGGAAGGAGATGTGCTCTCACTGTACCCAACCCCTGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp AACCAATGTAGTGGGAGGGTGTTTTGTGGAGTTTTAAGTGCTTCTCCTGGCTTCGAGTTCTCCAGGCAGTaGTCTCGGGGCACCAGTGGT +
Preference number: 2 (lower is better)
Translates to: NQCSGRVFCGVLSASPGFEFSRQ*SRGTSG
Trigger: ACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTC...GAAGCCAGGAGAAGCACTTAAAACTCCACAAAACACCCTCCCACTACATTGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
3UTR-3UTR GCA 90 bp TTAAAAATGCAGTTTCCCTGTGTTTTGTCTTCCGGAAACAGGCCCTGCGCACCCTCGTGGTCCCTCCTCTaGCTTCCCTGTTCAGAACAG +
Preference number: 2 (lower is better)
Translates to: LKMQFPCVLSSGNRPCAPSWSLL*LPCSEQ
Trigger: CTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGA...GGGTGCGCAGGGCCTGTTTCCGGAAGACAAAACACAGGGAAACTGCATTTTTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp CAGGCCCTGCGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACACTCAATGGACGGTCTTaGTCGCCTGCAAAATCAGAA +
Preference number: 2 (lower is better)
Translates to: QALRTLAAFPFDTERGRTLNGRS*SPAKSE
Trigger: TTCTGATTTTGCAGGCGACCAAGACCGTCCATTGAG...TGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCGCAGGGCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp GAACAAATTTTACCATCCTCTTTCCCAGGCCTTCCCTCCCTGATGCCGCCCATTCCGCTGTTGGCCAGCTaGCTTTATTTTACCTCTCCC +
Preference number: 2 (lower is better)
Translates to: EQILPSSFPGLPSLMPPIPLLAS*LYFTSP
Trigger: GGGAGAGGTAAAATAAAGCCAGCTGGCCAACAGCGG...AATGGGCGGCATCAGGGAGGGAAGGCCTGGGAAAGAGGATGGTAAAATTTGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp CCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGATCTCTTGGTAAAAGTTaGCATCGTGGTCCCTCCTCT +
Preference number: 2 (lower is better)
Translates to: PPLPSLFRTGWLVGLTLRSLGKS*HRGPSS
Trigger: AGAGGAGGGACCACGATGCCAACTTTTACCAAGAGA...TCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
3UTR-3UTR CCA 90 bp CCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGTTATGGCAGATTGGGTaGGGTGTGAGTGGAAGAAAT +
Preference number: 2 (lower is better)
Translates to: PSSAFPVQNRLACGTYPKLWQIG*GVSGRN
Trigger: ATTTCTTCCACTCACACCCCACCCAATCTGCCATAA...CTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
3UTR-3UTR TCA 90 bp TTAAAAATGCAGTTTCCCTGTGTTTTGTCTTCCGGAAACAGGCCCTGCGCACCCTGCTATTGTCACCAGTaGCCGGGCAGAATGCCAATC +
Preference number: 2 (lower is better)
Translates to: LKMQFPCVLSSGNRPCAPCYCHQ*PGRMPI
Trigger: GATTGGCATTCTGCCCGGTCACTGGTGACAATAGCA...GGGTGCGCAGGGCCTGTTTCCGGAAGACAAAACACAGGGAAACTGCATTTTTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp TGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATTGCTATTGTCACCAGTaGCCGGGCAGAATGCCAATC +
Preference number: 2 (lower is better)
Translates to: CVPGHILLLSPVTGQNANCYCHQ*PGRMPI
Trigger: GATTGGCATTCTGCCCGGTCACTGGTGACAATAGCA...ATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp AGTGAGAGGTTTGGCCTAGGGAAAGAGCCACCTTTCTTCTGTTTGGTAGGCCCAGAAGAGAATACATTGTaGGGGCTGCCGTCACAGCAT +
Preference number: 2 (lower is better)
Translates to: SERFGLGKEPPFFCLVGPEENTL*GLPSQH
Trigger: ATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTC...TGGGCCTACCAAACAGAAGAAAGGTGGCTCTTTCCCTAGGCCAAACCTCTCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp AGTGAGAGGTTTGGCCTAGGGAAAGAGCCACCTTTCTTCTGTTTGGTAGGCCCACTAGAACCCCTGCGGTaGAGGAAAGATGAACTTGTC +
Preference number: 2 (lower is better)
Translates to: SERFGLGKEPPFFCLVGPLEPLR*RKDELV
Trigger: GACAAGTTCATCTTTCCTTCACCGCAGGGGTTCTAG...TGGGCCTACCAAACAGAAGAAAGGTGGCTCTTTCCCTAGGCCAAACCTCTCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp TCGGTAGAAAAGCCCAGTTTGTCTTTCAGTGCGCGAACATCATGCCCTGTGCTGCTAGAACCCCTGCGGTaGAGGAAAGATGAACTTGTC +
Preference number: 2 (lower is better)
Translates to: SVEKPSLSFSARTSCPVLLEPLR*RKDELV
Trigger: GACAAGTTCATCTTTCCTTCACCGCAGGGGTTCTAG...CAGCACAGGGCATGATGTTCGCGCACTGAAAGACAAACTGGGCTTTTCTACCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp AGTGAGAGGTTTGGCCTAGGGAAAGAGCCACCTTTCTTCTGTTTGGTAGGCCCAGTACCTGAAGGTAGATaGAGAAGCCCTGGGTCTACT +
Preference number: 2 (lower is better)
Translates to: SERFGLGKEPPFFCLVGPVPEGR*RSPGST
Trigger: AGTAGACCCAGGGCTTCTTCATCTACCTTCAGGTAC...TGGGCCTACCAAACAGAAGAAAGGTGGCTCTTTCCCTAGGCCAAACCTCTCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp GAAAGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGGTACCTGAAGGTAGATaGAGAAGCCCTGGGTCTACT +
Preference number: 2 (lower is better)
Translates to: ERRIVLEASVRGRLWMNQVPEGR*RSPGST
Trigger: AGTAGACCCAGGGCTTCTTCATCTACCTTCAGGTAC...CTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp AGTGAGAGGTTTGGCCTAGGGAAAGAGCCACCTTTCTTCTGTTTGGTAGGCCCAGGACCTATGGCATTCTaGGCTCCCCTTTGTAAACAG +
Preference number: 2 (lower is better)
Translates to: SERFGLGKEPPFFCLVGPGPMAF*APLCKQ
Trigger: CTGTTTACAAAGGGGAGCTCAGAATGCCATAGGTCC...TGGGCCTACCAAACAGAAGAAAGGTGGCTCTTTCCCTAGGCCAAACCTCTCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp AGAAAGCCAGCACAGGTGTCACTAGGAATCAGCTTTTGTCAGAGTAGGAGCAGGGCTTCCATCAGCCAGTaGATGCTGACAGTTGTCTGG +
Preference number: 2 (lower is better)
Translates to: RKPAQVSLGISFCQSRSRASISQ*MLTVVW
Trigger: CCAGACAACTGTCAGCATTCACTGGCTGATGGAAGC...CCTGCTCCTACTCTGACAAAAGCTGATTCCTAGTGACACCTGTGCTGGCTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp ACTTATCAGGAACGATGCATGGTCCGCTTGTGTTCACTGCATTGCCTAGCCTGCCTGAGACCAGAAGCTTaGAGGGTGTGTTTTCCCAGA +
Preference number: 2 (lower is better)
Translates to: TYQERCMVRLCSLHCLACLRPEA*RVCFPR
Trigger: TCTGGGAAAACACACCCTGCAAGCTTCTGGTCTCAG...GCAGGCTAGGCAATGCAGTGAACACAAGCGGACCATGCATCGTTCCTGATAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTCTGCACATTAGTGTTTaGTTGCCTTTCACATTCTCA +
Preference number: 2 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTLHISV*LPFTFS
Trigger: TGAGAATGTGAAAGGCAAGCAAACACTAATGTGCAG...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR GCA 90 bp GCAACGTCACTTTCAAGGGTGCGGGAGAAAACTAATGCAAATCTTGGGTCTTCACCTGGCTTCTCCCTCTaGTGGGCCACCACATCATCT +
Preference number: 2 (lower is better)
Translates to: ATSLSRVREKTNANLGSSPGFSL*WATTSS
Trigger: AGATGATGTGGTGGCCCAGCAGAGGGAGAAGCCAGG...TGAAGACCCAAGATTTGCATTAGTTTTCTCCCGCACCCTTGAAAGTGACGTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR GCA 90 bp CCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGATTGTGGAGTTTTAAGTaGTTCTCCTGGCTTCTCCCT +
Preference number: 2 (lower is better)
Translates to: PPLPSLFRTGWLVGLTLRLWSFK*FSWLLP
Trigger: AGGGAGAAGCCAGGAGAAGCACTTAAAACTCCACAA...TCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR GCA 90 bp GAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTAGGCTTGTGGAGTTTTAAGTaGTTCTCCTGGCTTCTCCCT +
Preference number: 2 (lower is better)
Translates to: EACRVCFPRGWVCVWTVGLWSFK*FSWLLP
Trigger: AGGGAGAAGCCAGGAGAAGCACTTAAAACTCCACAA...GCCTACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp GCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCTAAATTTAAGTGCTTCTCCTaGCTTCTCCCTCTGCTGGGC +
Preference number: 2 (lower is better)
Translates to: AFPVQNRLACGTYPKKAKFKCFS*LLPLLG
Trigger: GCCCAGCAGAGGGAGAAGCCAGGAGAAGCACTTAAA...TTTAGCTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR TCA 90 bp TGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATGAAGAGAATACATTGTaGGGGCTGCCGTCACAGCAT +
Preference number: 2 (lower is better)
Translates to: CVPGHILLLSPVTGQNANEENTL*GLPSQH
Trigger: ATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTC...ATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp TCGGTAGAAAAGCCCAGTTTGTCTTTCAGTGCGCGAACATCATGCCCTGTGCTGACATGGCCAACCACTTaGAATGTGTGGGCTTTTCAG +
Preference number: 2 (lower is better)
Translates to: SVEKPSLSFSARTSCPVLTWPTT*NVWAFQ
Trigger: CTGAAAAGCCCACACATTTCAAGTGGTTGGCCATGT...CAGCACAGGGCATGATGTTCGCGCACTGAAAGACAAACTGGGCTTTTCTACCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp AAGGACAGTCTGTCTCTGAGGAAGGCTAACTTTCTAACAATGAAACATGCAAAACAGAAAGTACCTGCCTaGCCCGAGCCTCTGCGGGGG +
Preference number: 2 (lower is better)
Translates to: KDSLSLRKANFLTMKHAKQKVPA*PEPLRG
Trigger: CCCCCGCAGAGGCTCGGGTCAGGCAGGTACTTTCTG...TTTTGCATGTTTCATTGTTAGAAAGTTAGCCTTCCTCAGAGACAGACTGTCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp AGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGAGGCGGTTATGTTCACAATaGGGACAGAAGGGTCAGAAA +
Preference number: 2 (lower is better)
Translates to: RRIVLEASVRGRLWMNQRRLCSQ*GQKGQK
Trigger: TTTCTGACCCTTCTGTCCTCATTGTGAACATAACCG...CCTCTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp AGCAAGGGACAGCGGAGAGGGTCCAGTTTGAACAAAGGTGACATATGGGGAAGTAGTGACCGGGCAGAATaGCAATCCCTGTGTAATACT +
Preference number: 2 (lower is better)
Translates to: SKGQRRGSSLNKGDIWGSSDRAE*QSLCNT
Trigger: AGTATTACACAGGGATTGGCATTCTGCCCGGTCACT...ACTTCCCCATATGTCACCTTTGTTCAAACTGGACCCTCTCCGCTGTCCCTTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR GCA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCGAGTTCTCCAGGCAGTaGTCTCGGGGCACCAGTGGT +
Preference number: 2 (lower is better)
Translates to: SLLETNILCPWTHIAIVTEFSRQ*SRGTSG
Trigger: ACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTC...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR CCA 90 bp AGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGAGGAAAGGCGTATTGTCTTaGAAGCATCAGTCAGGGGTA +
Preference number: 2 (lower is better)
Translates to: RRIVLEASVRGRLWMNQRKGVLS*KHQSGV
Trigger: TACCCCTGACTGATGCTTCCAAGACAATACGCCTTT...CCTCTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp AGAAAGCCAGCACAGGTGTCACTAGGAATCAGCTTTTGTCAGAGTAGGAGCAGGATGCTGACAGTTGTCTaGCTTCTCATGGTGGCCTGT +
Preference number: 2 (lower is better)
Translates to: RKPAQVSLGISFCQSRSRMLTVV*LLMVAC
Trigger: ACAGGCCACCATGAGAAGCCAGACAACTGTCAGCAT...CCTGCTCCTACTCTGACAAAAGCTGATTCCTAGTGACACCTGTGCTGGCTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTGGCTTCTCCCTCTGCTaGGCCACCACATCATCTCTA +
Preference number: 2 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSGFSLC*ATTSSL
Trigger: TAGAGATGATGTGGTGGCCCAGCAGAGGGAGAAGCC...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR CCA 90 bp GCAACGTCACTTTCAAGGGTGCGGGAGAAAACTAATGCAAATCTTGGGTCTTCAGGCTTCTCCCTCTGCTaGGCCACCACATCATCTCTA +
Preference number: 2 (lower is better)
Translates to: ATSLSRVREKTNANLGSSGFSLC*ATTSSL
Trigger: TAGAGATGATGTGGTGGCCCAGCAGAGGGAGAAGCC...TGAAGACCCAAGATTTGCATTAGTTTTCTCCCGCACCCTTGAAAGTGACGTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR CCA 90 bp ATTATGAAGAGAATACATTGTGAGGGCTGCCGTCACAGCATTGACGTGGAGAGGGAGAGTGAGAGGGGATaGATTCTGGGTGTTTTGGGG +
Preference number: 2 (lower is better)
Translates to: IMKRIHCEGCRHSIDVERESERG*ILGVLG
Trigger: CCCCAAAACACCCAGAATCCATCCCCTCTCACTCTC...CCTCTCCACGTCAATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTCATAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp GCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCTAAACTGTTCAGAACAGGCTaGCTTGTGGGACTTACCCTA +
Preference number: 2 (lower is better)
Translates to: AFPVQNRLACGTYPKKAKLFRTG*LVGLTL
Trigger: TAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAG...TTTAGCTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
3UTR-3UTR CCA 90 bp GAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTAGTCCTTGGGTGGGGTGTGAGTaGAAGAAATGGAGGCCTTAT +
Preference number: 2 (lower is better)
Translates to: EARLRNMALSRATAGTSPWVGCE*KKWRPY
Trigger: ATAAGGCCTCCATTTCTTCCACTCACACCCCACCCA...AGGACTAGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp ATTATGAAGAGAATACATTGTGAGGGCTGCCGTCACAGCATTGACGTGGAGAGGGAAGAGAATACATTGTaGGGGCTGCCGTCACAGCAT +
Preference number: 2 (lower is better)
Translates to: IMKRIHCEGCRHSIDVEREENTL*GLPSQH
Trigger: ATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTC...CCTCTCCACGTCAATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTCATAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp GGATGTGTAGTTTCTTCGTGTCCCAAATCAGATATTCACTTAGGTGGAATCGACAGCCAGAGCTTTCGCTaGCACCAGCTCAGGTGTCCT +
Preference number: 2 (lower is better)
Translates to: GCVVSSCPKSDIHLGGIDSQSFR*HQLRCP
Trigger: AGGACACCTGAGCTGGTGTCAGCGAAAGCTCTGGCT...GTCGATTCCACCTAAGTGAATATCTGATTTGGGACACGAAGAAACTACACATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp GAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTAGTCCTAGTGACCGGGCAGAATaGCAATCCCTGTGTAATACT +
Preference number: 2 (lower is better)
Translates to: EARLRNMALSRATAGTSPSDRAE*QSLCNT
Trigger: AGTATTACACAGGGATTGGCATTCTGCCCGGTCACT...AGGACTAGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR GCA 90 bp AGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGAGGATACCCATTGATCAGTaGAGCACACACCTAAGCTTA +
Preference number: 2 (lower is better)
Translates to: RRIVLEASVRGRLWMNQRIPIDQ*STHLSL
Trigger: TAAGCTTAGGTGTGTGCTGCACTGATCAATGGGTAT...CCTCTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp CCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGACTGCACATTAGTGTTTaGTTGCCTTTCACATTCTCA +
Preference number: 2 (lower is better)
Translates to: PPLPSLFRTGWLVGLTLRLHISV*LPFTFS
Trigger: TGAGAATGTGAAAGGCAAGCAAACACTAATGTGCAG...TCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR GCA 90 bp ATTGTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTCCTGGCTTCTCCCTCTaGTGGGCCACCACATCATCT +
Preference number: 2 (lower is better)
Translates to: IVKITVSLGKSWHRGPSSPGFSL*WATTSS
Trigger: AGATGATGTGGTGGCCCAGCAGAGGGAGAAGCCAGG...AGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTACAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR GCA 90 bp TTAGGATCAGTAAGGTTTGCTGTCGTTTTTGGAGCGTTTCAGCTGCACCTTCAAGCAGCACTCTGCTGTTaGAGCAAGCTCTGGCTGTAC +
Preference number: 2 (lower is better)
Translates to: LGSVRFAVVFGAFQLHLQAALCC*SKLWLY
Trigger: GTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGC...TTGAAGGTGCAGCTGAAACGCTCCAAAAACGACAGCAAACCTTACTGATCCTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
3UTR-3UTR CCA 90 bp TTAAAAATGCAGTTTCCCTGTGTTTTGTCTTCCGGAAACAGGCCCTGCGCACCCCTCAATGGACGGTCTTaGTCGCCTGCAAAATCAGAA +
Preference number: 2 (lower is better)
Translates to: LKMQFPCVLSSGNRPCAPLNGRS*SPAKSE
Trigger: TTCTGATTTTGCAGGCGACCAAGACCGTCCATTGAG...GGGTGCGCAGGGCCTGTTTCCGGAAGACAAAACACAGGGAAACTGCATTTTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp AACCAATGTAGTGGGAGGGTGTTTTGTGGAGTTTTAAGTGCTTCTCCTGGCTTCCTCTCGGGGCACCAGTaGTTCAGAGTTAGAACTGCA +
Preference number: 2 (lower is better)
Translates to: NQCSGRVFCGVLSASPGFLSGHQ*FRVRTA
Trigger: TGCAGTTCTAACTCTGAACCACTGGTGCCCCGAGAG...GAAGCCAGGAGAAGCACTTAAAACTCCACAAAACACCCTCCCACTACATTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
3UTR-3UTR CCA 90 bp GCAACGTCACTTTCAAGGGTGCGGGAGAAAACTAATGCAAATCTTGGGTCTTCAGAGAGTGAGAGGGGATaGATTCTGGGTGTTTTGGGG +
Preference number: 2 (lower is better)
Translates to: ATSLSRVREKTNANLGSSESERG*ILGVLG
Trigger: CCCCAAAACACCCAGAATCCATCCCCTCTCACTCTC...TGAAGACCCAAGATTTGCATTAGTTTTCTCCCGCACCCTTGAAAGTGACGTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR CCA 90 bp GCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCTAAATCTCTTGGTAAAAGTTaGCATCGTGGTCCCTCCTCT +
Preference number: 2 (lower is better)
Translates to: AFPVQNRLACGTYPKKAKSLGKS*HRGPSS
Trigger: AGAGGAGGGACCACGATGCCAACTTTTACCAAGAGA...TTTAGCTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
3UTR-3UTR CCA 90 bp TCTGGGGAGAAAACAAGGGAGAGTCAGAAGTTACACAGAGTCTACGCAGCAGCATCTCTTGGTAAAAGTTaGCATCGTGGTCCCTCCTCT +
Preference number: 2 (lower is better)
Translates to: SGEKTRESQKLHRVYAAASLGKS*HRGPSS
Trigger: AGAGGAGGGACCACGATGCCAACTTTTACCAAGAGA...TGCTGCTGCGTAGACTCTGTGTAACTTCTGACTCTCCCTTGTTTTCTCCCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp AGCAAGGGACAGCGGAGAGGGTCCAGTTTGAACAAAGGTGACATATGGGGAAGTTTAATTATGGCAGATTaGGTGGGGTGTGAGTGGAAG +
Preference number: 2 (lower is better)
Translates to: SKGQRRGSSLNKGDIWGSLIMAD*VGCEWK
Trigger: CTTCCACTCACACCCCACCCAATCTGCCATAATTAA...ACTTCCCCATATGTCACCTTTGTTCAAACTGGACCCTCTCCGCTGTCCCTTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp GAAAGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGAGACATCAGAAACAATaGCGGGACGATGAAACTGTT +
Preference number: 2 (lower is better)
Translates to: ERRIVLEASVRGRLWMNQRHQKQ*RDDETV
Trigger: AACAGTTTCATCGTCCCGTCATTGTTTCTGATGTCT...CTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp TCGGTAGAAAAGCCCAGTTTGTCTTTCAGTGCGCGAACATCATGCCCTGTGCTGGAGAGGTTAGAAAAGTaGCACACGGCACTTATACAA +
Preference number: 2 (lower is better)
Translates to: SVEKPSLSFSARTSCPVLERLEK*HTALIQ
Trigger: TTGTATAAGTGCCGTGTGTCACTTTTCTAACCTCTC...CAGCACAGGGCATGATGTTCGCGCACTGAAAGACAAACTGGGCTTTTCTACCGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp GAAATCAAACTTGAAATCAGTCATTGTCAGGGGGCCCACAAGAGTAAGCCACAAAATGGAGGGAGGGTGTaGAGGAAAAGGGAGCTGAGA +
Preference number: 2 (lower is better)
Translates to: EIKLEISHCQGAHKSKPQNGGRV*RKRELR
Trigger: TCTCAGCTCCCTTTTCCTTCACACCCTCCCTCCATT...TTGTGGCTTACTCTTGTGGGCCCCCTGACAATGACTGATTTCAAGTTTGATTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp AGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGAGGGAACGAGATGGTCTATaGAATACAACTGGTATTCTC +
Preference number: 2 (lower is better)
Translates to: RRIVLEASVRGRLWMNQRERDGL*NTTGIL
Trigger: GAGAATACCAGTTGTATTTCATAGACCATCTCGTTC...CCTCTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp GGATGTGTAGTTTCTTCGTGTCCCAAATCAGATATTCACTTAGGTGGAATCGACGAACCTCATGCCCAGTaGGAGGTTTGGCCTAGGGAA +
Preference number: 2 (lower is better)
Translates to: GCVVSSCPKSDIHLGGIDEPHAQ*EVWPRE
Trigger: TTCCCTAGGCCAAACCTCTCACTGGGCATGAGGTTC...GTCGATTCCACCTAAGTGAATATCTGATTTGGGACACGAAGAAACTACACATCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp AGAAAGCCAGCACAGGTGTCACTAGGAATCAGCTTTTGTCAGAGTAGGAGCAGGCAAGAGGGAAAAGCATaGACTTTAGGTCTAGGGTTC +
Preference number: 2 (lower is better)
Translates to: RKPAQVSLGISFCQSRSRQEGKA*TLGLGF
Trigger: GAACCCTAGACCTAAAGTTCATGCTTTTCCCTCTTG...CCTGCTCCTACTCTGACAAAAGCTGATTCCTAGTGACACCTGTGCTGGCTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp ATTATGAAGAGAATACATTGTGAGGGCTGCCGTCACAGCATTGACGTGGAGAGGAGTGACCGGGCAGAATaGCAATCCCTGTGTAATACT +
Preference number: 2 (lower is better)
Translates to: IMKRIHCEGCRHSIDVERSDRAE*QSLCNT
Trigger: AGTATTACACAGGGATTGGCATTCTGCCCGGTCACT...CCTCTCCACGTCAATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTCATAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR GCA 90 bp GGATGTGTAGTTTCTTCGTGTCCCAAATCAGATATTCACTTAGGTGGAATCGACTCAACAGAAAGTACCTaGCTGACCCGAGCCTCTGCG +
Preference number: 2 (lower is better)
Translates to: GCVVSSCPKSDIHLGGIDSTEST*LTRASA
Trigger: CGCAGAGGCTCGGGTCAGGCAGGTACTTTCTGTTGA...GTCGATTCCACCTAAGTGAATATCTGATTTGGGACACGAAGAAACTACACATCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp GATCAGGGGTTGGGTACAGTGAGAGCACATCTCCTTCCTATCCTGTGTCTACTGATACCCATTGATCAGTaGAGCACACACCTAAGCTTA +
Preference number: 2 (lower is better)
Translates to: DQGLGTVRAHLLPILCLLIPIDQ*STHLSL
Trigger: TAAGCTTAGGTGTGTGCTGCACTGATCAATGGGTAT...CAGTAGACACAGGATAGGAAGGAGATGTGCTCTCACTGTACCCAACCCCTGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp AGGGAGGGTGTGAAGGAAAAGGGAGCTGAGACCAGAAGCTTGCAGGGTGTGTTTCTGCACATTAGTGTTTaGTTGCCTTTCACATTCTCA +
Preference number: 2 (lower is better)
Translates to: REGVKEKGAETRSLQGVFLHISV*LPFTFS
Trigger: TGAGAATGTGAAAGGCAAGCAAACACTAATGTGCAG...AAACACACCCTGCAAGCTTCTGGTCTCAGCTCCCTTTTCCTTCACACCCTCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp TGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATTTGTGGAGTTTTAAGTaGTTCTCCTGGCTTCTCCCT +
Preference number: 2 (lower is better)
Translates to: CVPGHILLLSPVTGQNANLWSFK*FSWLLP
Trigger: AGGGAGAAGCCAGGAGAAGCACTTAAAACTCCACAA...ATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR GCA 90 bp CAAACAAAGAGAATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACTCGTGGTCCCTCCTCTaGCTTCCCTGTTCAGAACAG +
Preference number: 2 (lower is better)
Translates to: QTKRIQWHNRRRGLLNKNSWSLL*LPCSEQ
Trigger: CTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGA...GTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTATTCTCTTTGTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR CCA 90 bp GGGACGACAATGGACCTATGGCATTCTGAGCTCCCCTTTGTAAACAGACAGCAAAAAGGCGTATTGTCTTaGAAGCATCAGTCAGGGGTA +
Preference number: 2 (lower is better)
Translates to: GTTMDLWHSELPFVNRQQKGVLS*KHQSGV
Trigger: TACCCCTGACTGATGCTTCCAAGACAATACGCCTTT...TTGCTGTCTGTTTACAAAGGGGAGCTCAGAATGCCATAGGTCCATTGTCGTCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp ACCAGTGACCGGGCAGAATGCCAATCCCTGTGTAATACTTTCAAGTCTGTTTTACTCTCGGGGCACCAGTaGTTCAGAGTTAGAACTGCA +
Preference number: 2 (lower is better)
Translates to: TSDRAECQSLCNTFKSVLLSGHQ*FRVRTA
Trigger: TGCAGTTCTAACTCTGAACCACTGGTGCCCCGAGAG...TAAAACAGACTTGAAAGTATTACACAGGGATTGGCATTCTGCCCGGTCACTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR CCA 90 bp ATGAAGATGTCTGGGGAGAAAACAAGGGAGAGTCAGAAGTTACACAGAGTCTACTTTAAGTGCTTCTCCTaGCTTCTCCCTCTGCTGGGC +
Preference number: 2 (lower is better)
Translates to: MKMSGEKTRESQKLHRVYFKCFS*LLPLLG
Trigger: GCCCAGCAGAGGGAGAAGCCAGGAGAAGCACTTAAA...GTAGACTCTGTGTAACTTCTGACTCTCCCTTGTTTTCTCCCCAGACATCTTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR CCA 90 bp GCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCTAAATGGGAGGGTGTTTTGTaGAGTTTTAAGTGCTTCTCC +
Preference number: 2 (lower is better)
Translates to: AFPVQNRLACGTYPKKAKWEGVL*SFKCFS
Trigger: GGAGAAGCACTTAAAACTCCACAAAACACCCTCCCA...TTTAGCTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR CCA 90 bp GCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCTAAATTATGGCAGATTGGGTaGGGTGTGAGTGGAAGAAAT +
Preference number: 2 (lower is better)
Translates to: AFPVQNRLACGTYPKKAKLWQIG*GVSGRN
Trigger: ATTTCTTCCACTCACACCCCACCCAATCTGCCATAA...TTTAGCTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
3UTR-3UTR TCA 90 bp GAAATCAAACTTGAAATCAGTCATTGTCAGGGGGCCCACAAGAGTAAGCCACAAGAAGAGAATACATTGTaGGGGCTGCCGTCACAGCAT +
Preference number: 2 (lower is better)
Translates to: EIKLEISHCQGAHKSKPQEENTL*GLPSQH
Trigger: ATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTC...TTGTGGCTTACTCTTGTGGGCCCCCTGACAATGACTGATTTCAAGTTTGATTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp GGGACGACAATGGACCTATGGCATTCTGAGCTCCCCTTTGTAAACAGACAGCAAAGACATCTGCTCATATaGAGCCAGACTCAGGAATAT +
Preference number: 2 (lower is better)
Translates to: GTTMDLWHSELPFVNRQQRHLLI*SQTQEY
Trigger: ATATTCCTGAGTCTGGCTTCATATGAGCAGATGTCT...TTGCTGTCTGTTTACAAAGGGGAGCTCAGAATGCCATAGGTCCATTGTCGTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp ACTTATCAGGAACGATGCATGGTCCGCTTGTGTTCACTGCATTGCCTAGCCTGCGAACGAGATGGTCTATaGAATACAACTGGTATTCTC +
Preference number: 2 (lower is better)
Translates to: TYQERCMVRLCSLHCLACERDGL*NTTGIL
Trigger: GAGAATACCAGTTGTATTTCATAGACCATCTCGTTC...GCAGGCTAGGCAATGCAGTGAACACAAGCGGACCATGCATCGTTCCTGATAAGT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTAGTGACCGGGCAGAATaGCAATCCCTGTGTAATACT +
Preference number: 2 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSSDRAE*QSLCNT
Trigger: AGTATTACACAGGGATTGGCATTCTGCCCGGTCACT...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR GCA 90 bp GAACAAATTTTACCATCCTCTTTCCCAGGCCTTCCCTCCCTGATGCCGCCCATTCTGCACATTAGTGTTTaGTTGCCTTTCACATTCTCA +
Preference number: 2 (lower is better)
Translates to: EQILPSSFPGLPSLMPPILHISV*LPFTFS
Trigger: TGAGAATGTGAAAGGCAAGCAAACACTAATGTGCAG...AATGGGCGGCATCAGGGAGGGAAGGCCTGGGAAAGAGGATGGTAAAATTTGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp AAGGACAGTCTGTCTCTGAGGAAGGCTAACTTTCTAACAATGAAACATGCAAAACCTGGCTTCTCCCTCTaGTGGGCCACCACATCATCT +
Preference number: 2 (lower is better)
Translates to: KDSLSLRKANFLTMKHAKPGFSL*WATTSS
Trigger: AGATGATGTGGTGGCCCAGCAGAGGGAGAAGCCAGG...TTTTGCATGTTTCATTGTTAGAAAGTTAGCCTTCCTCAGAGACAGACTGTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp AGGATCAGTAAGGTTTGCTGTCGTTTTTGGAGCGTTTCAGCTGCACCTTCAAGCCTGGATTGCAGCTTGTaGAGAGACTGGATTGTCATA +
Preference number: 2 (lower is better)
Translates to: RISKVCCRFWSVSAAPSSLDCSL*RDWIVI
Trigger: TATGACAATCCAGTCTCTGCACAAGCTGCAATCCAG...GCTTGAAGGTGCAGCTGAAACGCTCCAAAAACGACAGCAAACCTTACTGATCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
3UTR-3UTR CCA 90 bp AGTGAGAGGTTTGGCCTAGGGAAAGAGCCACCTTTCTTCTGTTTGGTAGGCCCAAACATTCTGTGTCCCTaGACACATATTGCTATTGTC +
Preference number: 2 (lower is better)
Translates to: SERFGLGKEPPFFCLVGPNILCP*THIAIV
Trigger: GACAATAGCAATATGTGTCCAGGGACACAGAATGTT...TGGGCCTACCAAACAGAAGAAAGGTGGCTCTTTCCCTAGGCCAAACCTCTCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp TGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATGGGAGGAAGTACCTTTaGAATTTGGCACTAGATAGT +
Preference number: 2 (lower is better)
Translates to: CVPGHILLLSPVTGQNANGRKYL*NLALDS
Trigger: ACTATCTAGTGCCAAATTCCAAAGGTACTTCCTCCC...ATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CCA 90 bp ATTGTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTTTTAAGTGCTTCTCCTaGCTTCTCCCTCTGCTGGGC +
Preference number: 2 (lower is better)
Translates to: IVKITVSLGKSWHRGPSSFKCFS*LLPLLG
Trigger: GCCCAGCAGAGGGAGAAGCCAGGAGAAGCACTTAAA...AGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTACAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR CCA 90 bp ATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACAAGGTAGCCCAGTTATGGCAGATTGGGTaGGGTGTGAGTGGAAGAAAT +
Preference number: 2 (lower is better)
Translates to: IQWHNRRRGLLNKNKVAQLWQIG*GVSGRN
Trigger: ATTTCTTCCACTCACACCCCACCCAATCTGCCATAA...CTGGGCTACCTTGTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR TCA 90 bp CAAGGGAGAGTCAGAAGTTACACAGAGTCTACGCAGCAGCAACGTCACTTTCAAAGACATCAGAAACAATaGCGGGACGATGAAACTGTT +
Preference number: 2 (lower is better)
Translates to: QGRVRSYTESTQQQRHFQRHQKQ*RDDETV
Trigger: AACAGTTTCATCGTCCCGTCATTGTTTCTGATGTCT...TTGAAAGTGACGTTGCTGCTGCGTAGACTCTGTGTAACTTCTGACTCTCCCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR TCA 90 bp GACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATAAAATATAGGTGCTATTGTCACCAGTaGCCGGGCAGAATGCCAATC +
Preference number: 2 (lower is better)
Translates to: DAAYSSLSPVHWNSIKYRCYCHQ*PGRMPI
Trigger: GATTGGCATTCTGCCCGGTCACTGGTGACAATAGCA...CCTATATTTTATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp ATGGTCTATGAAATACAACTGGTATTCTCTTGTGTTTCTACACGTGTACCTACAAATAGCCCTCAAGGATaGAGGAAGGCCCCGGCAGTG +
Preference number: 2 (lower is better)
Translates to: MVYEIQLVFSCVSTRVPTNSPQG*RKAPAV
Trigger: CACTGCCGGGGCCTTCCTTCATCCTTGAGGGCTATT...TGTAGGTACACGTGTAGAAACACAAGAGAATACCAGTTGTATTTCATAGACCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp CAAGGGAGAGTCAGAAGTTACACAGAGTCTACGCAGCAGCAACGTCACTTTCAATTTTCCACAGCACAATaGAACCCCAAGAGAATCCAT +
Preference number: 2 (lower is better)
Translates to: QGRVRSYTESTQQQRHFQFSTAQ*NPKRIH
Trigger: ATGGATTCTCTTGGGGTTTCATTGTGCTGTGGAAAA...TTGAAAGTGACGTTGCTGCTGCGTAGACTCTGTGTAACTTCTGACTCTCCCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR GCA 90 bp TCGGTAGAAAAGCCCAGTTTGTCTTTCAGTGCGCGAACATCATGCCCTGTGCTGCAGTTTCCACTAGGTTaGATTAACTTTGGCTTTTCT +
Preference number: 2 (lower is better)
Translates to: SVEKPSLSFSARTSCPVLQFPLG*INFGFS
Trigger: AGAAAAGCCAAAGTTAATGCAACCTAGTGGAAACTG...CAGCACAGGGCATGATGTTCGCGCACTGAAAGACAAACTGGGCTTTTCTACCGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp TTAAAAATGCAGTTTCCCTGTGTTTTGTCTTCCGGAAACAGGCCCTGCGCACCCAACATTCTGTGTCCCTaGACACATATTGCTATTGTC +
Preference number: 2 (lower is better)
Translates to: LKMQFPCVLSSGNRPCAPNILCP*THIAIV
Trigger: GACAATAGCAATATGTGTCCAGGGACACAGAATGTT...GGGTGCGCAGGGCCTGTTTCCGGAAGACAAAACACAGGGAAACTGCATTTTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp AGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGAGGAGGAAAGAACATGTGTaGTCAAAAGACCATAAAATG +
Preference number: 2 (lower is better)
Translates to: RRIVLEASVRGRLWMNQRRKEHV*SKDHKM
Trigger: CATTTTATGGTCTTTTGACCACACATGTTCTTTCCT...CCTCTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp ATTGTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTCTGTTCAGAACAGGCTaGCTTGTGGGACTTACCCTA +
Preference number: 2 (lower is better)
Translates to: IVKITVSLGKSWHRGPSSLFRTG*LVGLTL
Trigger: TAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAG...AGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTACAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
3UTR-3UTR CCA 90 bp GGATGTGTAGTTTCTTCGTGTCCCAAATCAGATATTCACTTAGGTGGAATCGACCTGTTCAGAACAGGCTaGCTTGTGGGACTTACCCTA +
Preference number: 2 (lower is better)
Translates to: GCVVSSCPKSDIHLGGIDLFRTG*LVGLTL
Trigger: TAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAG...GTCGATTCCACCTAAGTGAATATCTGATTTGGGACACGAAGAAACTACACATCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp ATTGTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTTGGGTGGGGTGTGAGTaGAAGAAATGGAGGCCTTAT +
Preference number: 2 (lower is better)
Translates to: IVKITVSLGKSWHRGPSSWVGCE*KKWRPY
Trigger: ATAAGGCCTCCATTTCTTCCACTCACACCCCACCCA...AGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTACAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
3UTR-3UTR TCA 90 bp TTAAAAATGCAGTTTCCCTGTGTTTTGTCTTCCGGAAACAGGCCCTGCGCACCCGAATTCATAGCTAGATaGGGTCACATGCAAATTTCA +
Preference number: 2 (lower is better)
Translates to: LKMQFPCVLSSGNRPCAPEFIAR*GHMQIS
Trigger: TGAAATTTGCATGTGACCTCATCTAGCTATGAATTC...GGGTGCGCAGGGCCTGTTTCCGGAAGACAAAACACAGGGAAACTGCATTTTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp GAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTAGTCCTAAACAAACCCAAGGATaGCAGTATAAAAAGTCACCA +
Preference number: 2 (lower is better)
Translates to: EARLRNMALSRATAGTSPKQTQG*QYKKSP
Trigger: TGGTGACTTTTTATACTGTCATCCTTGGGTTTGTTT...AGGACTAGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp AGAAAGCCAGCACAGGTGTCACTAGGAATCAGCTTTTGTCAGAGTAGGAGCAGGAAACAAACCCAAGGATaGCAGTATAAAAAGTCACCA +
Preference number: 2 (lower is better)
Translates to: RKPAQVSLGISFCQSRSRKQTQG*QYKKSP
Trigger: TGGTGACTTTTTATACTGTCATCCTTGGGTTTGTTT...CCTGCTCCTACTCTGACAAAAGCTGATTCCTAGTGACACCTGTGCTGGCTTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp CCCAAATCAGATATTCACTTAGGTGGAATCGACTGTATCTTTTTACACAACATAAATAGCCCTCAAGGATaGAGGAAGGCCCCGGCAGTG +
Preference number: 2 (lower is better)
Translates to: PKSDIHLGGIDCIFLHNINSPQG*RKAPAV
Trigger: CACTGCCGGGGCCTTCCTTCATCCTTGAGGGCTATT...TATGTTGTGTAAAAAGATACAGTCGATTCCACCTAAGTGAATATCTGATTTGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTTTTTCCACAGCACAATaGAACCCCAAGAGAATCCAT +
Preference number: 2 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSFSTAQ*NPKRIH
Trigger: ATGGATTCTCTTGGGGTTTCATTGTGCTGTGGAAAA...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR TCA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTTCTTCAGGGAGTCTATaGGCCATTCACATAATTTGC +
Preference number: 2 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSSSGSL*AIHIIC
Trigger: GCAAATTATGTGAATGGCTCATAGACTCCCTGAAGA...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR GCA 90 bp GAAAGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGCTAGATGAGGTCACATaGAAATTTCAAAGGTCAAAA +
Preference number: 2 (lower is better)
Translates to: ERRIVLEASVRGRLWMNQLDEVT*KFQRSK
Trigger: TTTTGACCTTTGAAATTTGCATGTGACCTCATCTAG...CTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp CACTTTCGAGAGCAACAGCAGGAACTAGTCCTAGTATTTGGTAGTAATTGTGGTAGTGACCGGGCAGAATaGCAATCCCTGTGTAATACT +
Preference number: 2 (lower is better)
Translates to: HFREQQQELVLVFGSNCGSDRAE*QSLCNT
Trigger: AGTATTACACAGGGATTGGCATTCTGCCCGGTCACT...ACCACAATTACTACCAAATACTAGGACTAGTTCCTGCTGTTGCTCTCGAAAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR GCA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATaGCAATCCCTGTGTAATACT +
Preference number: 2 (lower is better)
Translates to: SLLETNILCPWTHIAIVTSDRAE*QSLCNT
Trigger: AGTATTACACAGGGATTGGCATTCTGCCCGGTCACT...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR GCA 90 bp GAGCTTCTGGGGTTAGGATCAGTAAGGTTTGCTGTCGTTTTTGGAGCGTTTCAGCAAAACCAAAGCACTTaGTCAGATTGGTCTGTTTGT +
Preference number: 2 (lower is better)
Translates to: ELLGLGSVRFAVVFGAFQQNQST*SDWSVC
Trigger: ACAAACAGACCAATCTGAGCAAGTGCTTTGGTTTTG...CTGAAACGCTCCAAAAACGACAGCAAACCTTACTGATCCTAACCCCAGAAGCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
3UTR-3UTR CCA 90 bp TCATATGAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTGGGAGGAAGTACCTTTaGAATTTGGCACTAGATAGT +
Preference number: 2 (lower is better)
Translates to: SYEARLRNMALSRATAGTGRKYL*NLALDS
Trigger: ACTATCTAGTGCCAAATTCCAAAGGTACTTCCTCCC...AGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTCATATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CCA 90 bp GAAAGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGAACTTCTTGAAAGATTaGACCACCAAAAAGCCATTT +
Preference number: 2 (lower is better)
Translates to: ERRIVLEASVRGRLWMNQNFLKD*TTKKPF
Trigger: AAATGGCTTTTTGGTGGTCCAATCTTTCAAGAAGTT...CTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp TCTAACTGTGAGTCAGTTCAGCAAAAGGTGACACAAATAGGTAGCATTTGCCCCTGGGAGGGTGTTTTGTaGAGTTTTAAGTGCTTCTCC +
Preference number: 2 (lower is better)
Translates to: SNCESVQQKVTQIGSICPWEGVL*SFKCFS
Trigger: GGAGAAGCACTTAAAACTCCACAAAACACCCTCCCA...GGGGCAAATGCTACCTATTTGTGTCACCTTTTGCTGAACTGACTCACAGTTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR TCA 90 bp ACCAGTGACCGGGCAGAATGCCAATCCCTGTGTAATACTTTCAAGTCTGTTTTAAGACATCAGAAACAATaGCGGGACGATGAAACTGTT +
Preference number: 2 (lower is better)
Translates to: TSDRAECQSLCNTFKSVLRHQKQ*RDDETV
Trigger: AACAGTTTCATCGTCCCGTCATTGTTTCTGATGTCT...TAAAACAGACTTGAAAGTATTACACAGGGATTGGCATTCTGCCCGGTCACTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp CACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATAAGACATCAGAAACAATaGCGGGACGATGAAACTGTT +
Preference number: 2 (lower is better)
Translates to: HQHDAAYSSLSPVHWNSIRHQKQ*RDDETV
Trigger: AACAGTTTCATCGTCCCGTCATTGTTTCTGATGTCT...TATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp ATTGGACCACCAAAAAGCCATTTAACTCCAGGGTGTATAAAAATATTGTACACGTGCTATTGTCACCAGTaGCCGGGCAGAATGCCAATC +
Preference number: 2 (lower is better)
Translates to: IGPPKSHLTPGCIKILYTCYCHQ*PGRMPI
Trigger: GATTGGCATTCTGCCCGGTCACTGGTGACAATAGCA...CGTGTACAATATTTTTATACACCCTGGAGTTAAATGGCTTTTTGGTGGTCCAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR GCA 90 bp AGAAAGCCAGCACAGGTGTCACTAGGAATCAGCTTTTGTCAGAGTAGGAGCAGGCTAGATGAGGTCACATaGAAATTTCAAAGGTCAAAA +
Preference number: 2 (lower is better)
Translates to: RKPAQVSLGISFCQSRSRLDEVT*KFQRSK
Trigger: TTTTGACCTTTGAAATTTGCATGTGACCTCATCTAG...CCTGCTCCTACTCTGACAAAAGCTGATTCCTAGTGACACCTGTGCTGGCTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp GGGACGACAATGGACCTATGGCATTCTGAGCTCCCCTTTGTAAACAGACAGCAATCAGTCTTGCATGAATaGAGCAATGTTTTTCACATT +
Preference number: 2 (lower is better)
Translates to: GTTMDLWHSELPFVNRQQSVLHE*SNVFHI
Trigger: AATGTGAAAAACATTGCTGCATTCATGCAAGACTGA...TTGCTGTCTGTTTACAAAGGGGAGCTCAGAATGCCATAGGTCCATTGTCGTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp TGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATTCAGTCTTGCATGAATaGAGCAATGTTTTTCACATT +
Preference number: 2 (lower is better)
Translates to: CVPGHILLLSPVTGQNANSVLHE*SNVFHI
Trigger: AATGTGAAAAACATTGCTGCATTCATGCAAGACTGA...ATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR GCA 90 bp ATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCTCAGTCTTGCATGAATaGAGCAATGTTTTTCACATT +
Preference number: 2 (lower is better)
Translates to: ILCPWTHIAIVTSDRAECSVLHE*SNVFHI
Trigger: AATGTGAAAAACATTGCTGCATTCATGCAAGACTGA...GCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR CCA 90 bp GCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCTAAATGTGAGTGGAAGAAATaGAGGCCTTATTGTAAAAAT +
Preference number: 2 (lower is better)
Translates to: AFPVQNRLACGTYPKKAKCEWKK*RPYCKN
Trigger: ATTTTTACAATAAGGCCTCCATTTCTTCCACTCACA...TTTAGCTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
3UTR-3UTR CCA 90 bp CAAACAAAGAGAATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACTTATGGCAGATTGGGTaGGGTGTGAGTGGAAGAAAT +
Preference number: 2 (lower is better)
Translates to: QTKRIQWHNRRRGLLNKNLWQIG*GVSGRN
Trigger: ATTTCTTCCACTCACACCCCACCCAATCTGCCATAA...GTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTATTCTCTTTGTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR TCA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCGAGAGGTTAGAAAAGTaGCACACGGCACTTATACAA +
Preference number: 2 (lower is better)
Translates to: SLLETNILCPWTHIAIVTERLEK*HTALIQ
Trigger: TTGTATAAGTGCCGTGTGTCACTTTTCTAACCTCTC...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp TTGTACACGAGGGCATACCATGAAACCCTTATCAAAAAGCAGACACGGTCTTTATTTTCCACAGCACAATaGAACCCCAAGAGAATCCAT +
Preference number: 2 (lower is better)
Translates to: LYTRAYHETLIKKQTRSLFSTAQ*NPKRIH
Trigger: ATGGATTCTCTTGGGGTTTCATTGTGCTGTGGAAAA...TAAAGACCGTGTCTGCTTTTTGATAAGGGTTTCATGGTATGCCCTCGTGTACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp CAAGGGAGAGTCAGAAGTTACACAGAGTCTACGCAGCAGCAACGTCACTTTCAACTAGATGAGGTCACATaGAAATTTCAAAGGTCAAAA +
Preference number: 2 (lower is better)
Translates to: QGRVRSYTESTQQQRHFQLDEVT*KFQRSK
Trigger: TTTTGACCTTTGAAATTTGCATGTGACCTCATCTAG...TTGAAAGTGACGTTGCTGCTGCGTAGACTCTGTGTAACTTCTGACTCTCCCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR CCA 90 bp TTCTTGAAAGATTGGACCACCAAAAAGCCATTTAACTCCAGGGTGTATAAAAATCTCTCGGGGCACCAGTaGTTCAGAGTTAGAACTGCA +
Preference number: 2 (lower is better)
Translates to: FLKDWTTKKPFNSRVYKNLSGHQ*FRVRTA
Trigger: TGCAGTTCTAACTCTGAACCACTGGTGCCCCGAGAG...ATTTTTATACACCCTGGAGTTAAATGGCTTTTTGGTGGTCCAATCTTTCAAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp GACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATAAAATATAGGTGGGAGGGTGTTTTGTaGAGTTTTAAGTGCTTCTCC +
Preference number: 2 (lower is better)
Translates to: DAAYSSLSPVHWNSIKYRWEGVL*SFKCFS
Trigger: GGAGAAGCACTTAAAACTCCACAAAACACCCTCCCA...CCTATATTTTATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR CCA 90 bp ATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACAAGGTAGCCCAGTGTGAGTGGAAGAAATaGAGGCCTTATTGTAAAAAT +
Preference number: 2 (lower is better)
Translates to: IQWHNRRRGLLNKNKVAQCEWKK*RPYCKN
Trigger: ATTTTTACAATAAGGCCTCCATTTCTTCCACTCACA...CTGGGCTACCTTGTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR CCA 90 bp GAGCTTCTGGGGTTAGGATCAGTAAGGTTTGCTGTCGTTTTTGGAGCGTTTCAGTGTGAGTGGAAGAAATaGAGGCCTTATTGTAAAAAT +
Preference number: 2 (lower is better)
Translates to: ELLGLGSVRFAVVFGAFQCEWKK*RPYCKN
Trigger: ATTTTTACAATAAGGCCTCCATTTCTTCCACTCACA...CTGAAACGCTCCAAAAACGACAGCAAACCTTACTGATCCTAACCCCAGAAGCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
3UTR-3UTR TCA 90 bp TCTAACTGTGAGTCAGTTCAGCAAAAGGTGACACAAATAGGTAGCATTTGCCCCGAATTCATAGCTAGATaGGGTCACATGCAAATTTCA +
Preference number: 2 (lower is better)
Translates to: SNCESVQQKVTQIGSICPEFIAR*GHMQIS
Trigger: TGAAATTTGCATGTGACCTCATCTAGCTATGAATTC...GGGGCAAATGCTACCTATTTGTGTCACCTTTTGCTGAACTGACTCACAGTTAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp ACCAGTGACCGGGCAGAATGCCAATCCCTGTGTAATACTTTCAAGTCTGTTTTAGAATTCATAGCTAGATaGGGTCACATGCAAATTTCA +
Preference number: 2 (lower is better)
Translates to: TSDRAECQSLCNTFKSVLEFIAR*GHMQIS
Trigger: TGAAATTTGCATGTGACCTCATCTAGCTATGAATTC...TAAAACAGACTTGAAAGTATTACACAGGGATTGGCATTCTGCCCGGTCACTGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp CCCAAATCAGATATTCACTTAGGTGGAATCGACTGTATCTTTTTACACAACATAGAAGAGAATACATTGTaGGGGCTGCCGTCACAGCAT +
Preference number: 2 (lower is better)
Translates to: PKSDIHLGGIDCIFLHNIEENTL*GLPSQH
Trigger: ATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTC...TATGTTGTGTAAAAAGATACAGTCGATTCCACCTAAGTGAATATCTGATTTGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp TCATATGAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTCTAGATGAGGTCACATaGAAATTTCAAAGGTCAAAA +
Preference number: 2 (lower is better)
Translates to: SYEARLRNMALSRATAGTLDEVT*KFQRSK
Trigger: TTTTGACCTTTGAAATTTGCATGTGACCTCATCTAG...AGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTCATATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CCA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAACATTCTGTGTCCCTaGACACATATTGCTATTGTC +
Preference number: 2 (lower is better)
Translates to: SLLETNILCPWTHIAIVTNILCP*THIAIV
Trigger: GACAATAGCAATATGTGTCCAGGGACACAGAATGTT...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR CCA 90 bp CCCAAATCAGATATTCACTTAGGTGGAATCGACTGTATCTTTTTACACAACATAGAACTTGTCACACCGTaGAGGTGCCATCTGATCAGA +
Preference number: 2 (lower is better)
Translates to: PKSDIHLGGIDCIFLHNIELVTP*RCHLIR
Trigger: TCTGATCAGATGGCACCTCCACGGTGTGACAAGTTC...TATGTTGTGTAAAAAGATACAGTCGATTCCACCTAAGTGAATATCTGATTTGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp ACAAATAACATTAAGACCTTAAGACTTGTGATGAGAGCACAACTTAATCCACAGGGATTCTGGGTGTTTTaGGGTGAAGGACTAGCAAGG +
Preference number: 2 (lower is better)
Translates to: TNNIKTLRLVMRAQLNPQGFWVF*GEGLAR
Trigger: CCTTGCTAGTCCTTCACCCCAAAACACCCAGAATCC...CTGTGGATTAAGTTGTGCTCTCATCACAAGTCTTAAGGTCTTAATGTTATTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR TCA 90 bp TTGTACACGAGGGCATACCATGAAACCCTTATCAAAAAGCAGACACGGTCTTTAGAATTCATAGCTAGATaGGGTCACATGCAAATTTCA +
Preference number: 2 (lower is better)
Translates to: LYTRAYHETLIKKQTRSLEFIAR*GHMQIS
Trigger: TGAAATTTGCATGTGACCTCATCTAGCTATGAATTC...TAAAGACCGTGTCTGCTTTTTGATAAGGGTTTCATGGTATGCCCTCGTGTACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCGAATTCATAGCTAGATaGGGTCACATGCAAATTTCA +
Preference number: 2 (lower is better)
Translates to: SLLETNILCPWTHIAIVTEFIAR*GHMQIS
Trigger: TGAAATTTGCATGTGACCTCATCTAGCTATGAATTC...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp ATGGTCTATGAAATACAACTGGTATTCTCTTGTGTTTCTACACGTGTACCTACACGGTTATGTTCACAATaGGGACAGAAGGGTCAGAAA +
Preference number: 2 (lower is better)
Translates to: MVYEIQLVFSCVSTRVPTRLCSQ*GQKGQK
Trigger: TTTCTGACCCTTCTGTCCTCATTGTGAACATAACCG...TGTAGGTACACGTGTAGAAACACAAGAGAATACCAGTTGTATTTCATAGACCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp GAAATCAAACTTGAAATCAGTCATTGTCAGGGGGCCCACAAGAGTAAGCCACAACTAGATGAGGTCACATaGAAATTTCAAAGGTCAAAA +
Preference number: 2 (lower is better)
Translates to: EIKLEISHCQGAHKSKPQLDEVT*KFQRSK
Trigger: TTTTGACCTTTGAAATTTGCATGTGACCTCATCTAG...TTGTGGCTTACTCTTGTGGGCCCCCTGACAATGACTGATTTCAAGTTTGATTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp CACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATATCAGTCTTGCATGAATaGAGCAATGTTTTTCACATT +
Preference number: 2 (lower is better)
Translates to: HQHDAAYSSLSPVHWNSISVLHE*SNVFHI
Trigger: AATGTGAAAAACATTGCTGCATTCATGCAAGACTGA...TATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR GCA 90 bp TTCTTGAAAGATTGGACCACCAAAAAGCCATTTAACTCCAGGGTGTATAAAAATAGTGACCGGGCAGAATaGCAATCCCTGTGTAATACT +
Preference number: 2 (lower is better)
Translates to: FLKDWTTKKPFNSRVYKNSDRAE*QSLCNT
Trigger: AGTATTACACAGGGATTGGCATTCTGCCCGGTCACT...ATTTTTATACACCCTGGAGTTAAATGGCTTTTTGGTGGTCCAATCTTTCAAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CCA 90 bp GACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATAAAATATAGGAACATTCTGTGTCCCTaGACACATATTGCTATTGTC +
Preference number: 2 (lower is better)
Translates to: DAAYSSLSPVHWNSIKYRNILCP*THIAIV
Trigger: GACAATAGCAATATGTGTCCAGGGACACAGAATGTT...CCTATATTTTATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR CCA 90 bp ACCAGTGACCGGGCAGAATGCCAATCCCTGTGTAATACTTTCAAGTCTGTTTTATGTGAGTGGAAGAAATaGAGGCCTTATTGTAAAAAT +
Preference number: 2 (lower is better)
Translates to: TSDRAECQSLCNTFKSVLCEWKK*RPYCKN
Trigger: ATTTTTACAATAAGGCCTCCATTTCTTCCACTCACA...TAAAACAGACTTGAAAGTATTACACAGGGATTGGCATTCTGCCCGGTCACTGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp ATTGGACCACCAAAAAGCCATTTAACTCCAGGGTGTATAAAAATATTGTACACGGAGAGGTTAGAAAAGTaGCACACGGCACTTATACAA +
Preference number: 2 (lower is better)
Translates to: IGPPKSHLTPGCIKILYTERLEK*HTALIQ
Trigger: TTGTATAAGTGCCGTGTGTCACTTTTCTAACCTCTC...CGTGTACAATATTTTTATACACCCTGGAGTTAAATGGCTTTTTGGTGGTCCAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp ATTGGACCACCAAAAAGCCATTTAACTCCAGGGTGTATAAAAATATTGTACACGCAGTTTGAACAAAGGTaGCATATGGGGAAGTCAAGA +
Preference number: 2 (lower is better)
Translates to: IGPPKSHLTPGCIKILYTQFEQR*HMGKSR
Trigger: TCTTGACTTCCCCATATGTCACCTTTGTTCAAACTG...CGTGTACAATATTTTTATACACCCTGGAGTTAAATGGCTTTTTGGTGGTCCAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCTCAGTCTTGCATGAATaGAGCAATGTTTTTCACATT +
Preference number: 2 (lower is better)
Translates to: SLLETNILCPWTHIAIVTSVLHE*SNVFHI
Trigger: AATGTGAAAAACATTGCTGCATTCATGCAAGACTGA...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR CCA 90 bp GGATGTGTAGTTTCTTCGTGTCCCAAATCAGATATTCACTTAGGTGGAATCGACAACTTCTTGAAAGATTaGACCACCAAAAAGCCATTT +
Preference number: 2 (lower is better)
Translates to: GCVVSSCPKSDIHLGGIDNFLKD*TTKKPF
Trigger: AAATGGCTTTTTGGTGGTCCAATCTTTCAAGAAGTT...GTCGATTCCACCTAAGTGAATATCTGATTTGGGACACGAAGAAACTACACATCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp ACAAATAACATTAAGACCTTAAGACTTGTGATGAGAGCACAACTTAATCCACAGAGACATCAGAAACAATaGCGGGACGATGAAACTGTT +
Preference number: 2 (lower is better)
Translates to: TNNIKTLRLVMRAQLNPQRHQKQ*RDDETV
Trigger: AACAGTTTCATCGTCCCGTCATTGTTTCTGATGTCT...CTGTGGATTAAGTTGTGCTCTCATCACAAGTCTTAAGGTCTTAATGTTATTTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp ATGGTCTATGAAATACAACTGGTATTCTCTTGTGTTTCTACACGTGTACCTACAACCAGAAATCAAACTTaGAATCAGTCATTGTCAGGG +
Preference number: 2 (lower is better)
Translates to: MVYEIQLVFSCVSTRVPTTRNQT*NQSLSG
Trigger: CCCTGACAATGACTGATTTCAAGTTTGATTTCTGGT...TGTAGGTACACGTGTAGAAACACAAGAGAATACCAGTTGTATTTCATAGACCAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp CATAGAGAAATAACAAACAATAACAATTTCAGGCAACAAGACCACGGAATAGCATCTTCAGGGAGTCTATaGGCCATTCACATAATTTGC +
Preference number: 2 (lower is better)
Translates to: HREITNNNNFRQQDHGIASSGSL*AIHIIC
Trigger: GCAAATTATGTGAATGGCTCATAGACTCCCTGAAGA...TGCTATTCCGTGGTCTTGTTGCCTGAAATTGTTATTGTTTGTTATTTCTCTATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp GACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATAAAATATAGGTCAGTCTTGCATGAATaGAGCAATGTTTTTCACATT +
Preference number: 2 (lower is better)
Translates to: DAAYSSLSPVHWNSIKYRSVLHE*SNVFHI
Trigger: AATGTGAAAAACATTGCTGCATTCATGCAAGACTGA...CCTATATTTTATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR GCA 90 bp CCCAAATCAGATATTCACTTAGGTGGAATCGACTGTATCTTTTTACACAACATATCTAACAATGAAACATaGAAAACCAAGCCCTCGCCT +
Preference number: 2 (lower is better)
Translates to: PKSDIHLGGIDCIFLHNISNNET*KTKPSP
Trigger: AGGCGAGGGCTTGGTTTTGCATGTTTCATTGTTAGA...TATGTTGTGTAAAAAGATACAGTCGATTCCACCTAAGTGAATATCTGATTTGGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp ATGGTCTATGAAATACAACTGGTATTCTCTTGTGTTTCTACACGTGTACCTACAGGTTTCCAGATATTATaGAGAGAATACATTGTGAGG +
Preference number: 2 (lower is better)
Translates to: MVYEIQLVFSCVSTRVPTGFQIL*REYIVR
Trigger: CCTCACAATGTATTCTCTTCATAATATCTGGAAACC...TGTAGGTACACGTGTAGAAACACAAGAGAATACCAGTTGTATTTCATAGACCAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp ATGGTCTATGAAATACAACTGGTATTCTCTTGTGTTTCTACACGTGTACCTACAAAACAAACCCAAGGATaGCAGTATAAAAAGTCACCA +
Preference number: 2 (lower is better)
Translates to: MVYEIQLVFSCVSTRVPTKQTQG*QYKKSP
Trigger: TGGTGACTTTTTATACTGTCATCCTTGGGTTTGTTT...TGTAGGTACACGTGTAGAAACACAAGAGAATACCAGTTGTATTTCATAGACCAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR GCA 90 bp ATGGTCTATGAAATACAACTGGTATTCTCTTGTGTTTCTACACGTGTACCTACACAGTTTCCACTAGGTTaGATTAACTTTGGCTTTTCT +
Preference number: 2 (lower is better)
Translates to: MVYEIQLVFSCVSTRVPTQFPLG*INFGFS
Trigger: AGAAAAGCCAAAGTTAATGCAACCTAGTGGAAACTG...TGTAGGTACACGTGTAGAAACACAAGAGAATACCAGTTGTATTTCATAGACCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR CCA 90 bp ACAAATAACATTAAGACCTTAAGACTTGTGATGAGAGCACAACTTAATCCACAGAACATTCTGTGTCCCTaGACACATATTGCTATTGTC +
Preference number: 2 (lower is better)
Translates to: TNNIKTLRLVMRAQLNPQNILCP*THIAIV
Trigger: GACAATAGCAATATGTGTCCAGGGACACAGAATGTT...CTGTGGATTAAGTTGTGCTCTCATCACAAGTCTTAAGGTCTTAATGTTATTTGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR CCA 90 bp AAGGACAGTCTGTCTCTGAGGAAGGCTAACTTTCTAACAATGAAACATGCAAAAAACTTCTTGAAAGATTaGACCACCAAAAAGCCATTT +
Preference number: 2 (lower is better)
Translates to: KDSLSLRKANFLTMKHAKNFLKD*TTKKPF
Trigger: AAATGGCTTTTTGGTGGTCCAATCTTTCAAGAAGTT...TTTTGCATGTTTCATTGTTAGAAAGTTAGCCTTCCTCAGAGACAGACTGTCCTT
37% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR TCA 90 bp ACAAATAACATTAAGACCTTAAGACTTGTGATGAGAGCACAACTTAATCCACAGGAATTCATAGCTAGATaGGGTCACATGCAAATTTCA +
Preference number: 2 (lower is better)
Translates to: TNNIKTLRLVMRAQLNPQEFIAR*GHMQIS
Trigger: TGAAATTTGCATGTGACCTCATCTAGCTATGAATTC...CTGTGGATTAAGTTGTGCTCTCATCACAAGTCTTAAGGTCTTAATGTTATTTGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp TTCTTGAAAGATTGGACCACCAAAAAGCCATTTAACTCCAGGGTGTATAAAAATGGTTTCCAGATATTATaGAGAGAATACATTGTGAGG +
Preference number: 2 (lower is better)
Translates to: FLKDWTTKKPFNSRVYKNGFQIL*REYIVR
Trigger: CCTCACAATGTATTCTCTTCATAATATCTGGAAACC...ATTTTTATACACCCTGGAGTTAAATGGCTTTTTGGTGGTCCAATCTTTCAAGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR TCA 90 bp ACAAATAACATTAAGACCTTAAGACTTGTGATGAGAGCACAACTTAATCCACAGGGTTTCCAGATATTATaGAGAGAATACATTGTGAGG +
Preference number: 2 (lower is better)
Translates to: TNNIKTLRLVMRAQLNPQGFQIL*REYIVR
Trigger: CCTCACAATGTATTCTCTTCATAATATCTGGAAACC...CTGTGGATTAAGTTGTGCTCTCATCACAAGTCTTAAGGTCTTAATGTTATTTGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR GCA 90 bp ACAAATAACATTAAGACCTTAAGACTTGTGATGAGAGCACAACTTAATCCACAGTCAGTCTTGCATGAATaGAGCAATGTTTTTCACATT +
Preference number: 2 (lower is better)
Translates to: TNNIKTLRLVMRAQLNPQSVLHE*SNVFHI
Trigger: AATGTGAAAAACATTGCTGCATTCATGCAAGACTGA...CTGTGGATTAAGTTGTGCTCTCATCACAAGTCTTAAGGTCTTAATGTTATTTGT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR TCA 72 bp GGGGCGGGCGGGCGGGCGGGCGGGCGGGCAGGAGGGTaGGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGG +
Preference number: 3 (lower is better)
Translates to: GAGGRAGGRAGG*VLQAVLSGHQW
Trigger: CCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGCCCGCCCGCCCGCCCGCCCC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
3UTR TCA 72 bp CTGGGCCACCACATCATCTCTAACCGTGGGGCCCTCTaGGGGGCGGGCGGGCGGGCGGGCGGGCGGGCAGGA +
Preference number: 3 (lower is better)
Translates to: LGHHIISNRGAL*GAGGRAGGRAG
Trigger: TCCTGCCCGCCCGCCCGCCCGCCCGCCCGCCCCTCAGAGGGCCCCACGGTTAGAGATGATGTGGTGGCCCAG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
3UTR GCA 72 bp CGGGCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTaGTCTCGGGGCACCAGTGGTTCAGAGTTAGAACTG +
Preference number: 3 (lower is better)
Translates to: RAGGQEGEFSRQ*SRGTSGSELEL
Trigger: CAGTTCTAACTCTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGCCCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
3UTR CCA 72 bp TACCTGCCTGACCCGAGCCTCTGCGGGGGCCGCAGGTaGGTTAAGAGGAAGGAGGGCAGTTGGCTTCCATGG +
Preference number: 3 (lower is better)
Translates to: YLPDPSLCGGRR*VKRKEGSWLPW
Trigger: CCATGGAAGCCAACTGCCCTCCTTCCTCTTAACCCACCTGCGGCCCCCGCAGAGGCTCGGGTCAGGCAGGTA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR GCA 72 bp CTGCAAAATCAGAAACCGAGCTCAACAGAAAGTACCTaGCTGACCCGAGCCTCTGCGGGGGCCGCAGGTGGG +
Preference number: 3 (lower is better)
Translates to: LQNQKPSSTEST*LTRASAGAAGG
Trigger: CCCACCTGCGGCCCCCGCAGAGGCTCGGGTCAGGCAGGTACTTTCTGTTGAGCTCGGTTTCTGATTTTGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR CCA 72 bp CAGCCAGAGCTTTCGCTGACACCAGCTCAGGTGTCCTaGCACGGGCGAGAAGAGAAGGGAGCAGATAGCCAT +
Preference number: 3 (lower is better)
Translates to: QPELSLTPAQVS*HGREEKGADSH
Trigger: ATGGCTATCTGCTCCCTTCTCTTCTCGCCCGTGCCAGGACACCTGAGCTGGTGTCAGCGAAAGCTCTGGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR CCA 72 bp TGGCTGCCTGCAGCACTCTGCTGTTGCAGCAAGCTCTaGCTGTACAAAGTGGGCAGTGCAGCTGCCGCATAC +
Preference number: 3 (lower is better)
Translates to: WLPAALCCCSKL*LYKVGSAAAAY
Trigger: GTATGCGGCAGCTGCACTGCCCACTTTGTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
3UTR CCA 72 bp CTGGAGAGAGTGAGAGGGGATGGATTCTGGGTGTTTTaGGGTGAAGGACTAGCAAGGGACAGCGGAGAGGGT +
Preference number: 3 (lower is better)
Translates to: LERVRGDGFWVF*GEGLARDSGEG
Trigger: ACCCTCTCCGCTGTCCCTTGCTAGTCCTTCACCCCAAAACACCCAGAATCCATCCCCTCTCACTCTCTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR CAA 90 bp CCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGGGTTTGCTGTCGTTTTaGGAGCGTTTCAGCTGCACC +
Preference number: 3 (lower is better)
Translates to: PSSAFPVQNRLACGTYPKGLLSF*ERFSCT
Trigger: GGTGCAGCTGAAACGCTCCAAAAACGACAGCAAACC...CTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
3UTR-3UTR CAA 90 bp CAGGCCCTGCGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACACAGTTTCCCTGTGTTTaGTCTTCCGGAAACAGGCCC +
Preference number: 3 (lower is better)
Translates to: QALRTLAAFPFDTERGRTQFPCV*SSGNRP
Trigger: GGGCCTGTTTCCGGAAGACAAAACACAGGGAAACTG...TGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCGCAGGGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR TCA 72 bp CTGGCAGGCATATGGCTTCCATCAGCCAGTGAATGCTaGCAGTTGTCTGGCTTCTCATGGTGGCCTGTGCAT +
Preference number: 3 (lower is better)
Translates to: LAGIWLPSASEC*QLSGFSWWPVH
Trigger: ATGCACAGGCCACCATGAGAAGCCAGACAACTGTCAGCATTCACTGGCTGATGGAAGCCATATGCCTGCCAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR CCA 72 bp AGACCAGAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTaGGTGTGTGTTTGGACTGTAGGCATGACATTGGGG +
Preference number: 3 (lower is better)
Translates to: RPEACRVCFPRG*VCVWTVGMTLG
Trigger: CCCCAATGTCATGCCTACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTCTGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR CCA 72 bp TCAAGGATGAAGGAAGGCCCCGGCAGTGGTAAACAGTaGGCTAACACCAATCATGTCACTGGAAGTGCGCGT +
Preference number: 3 (lower is better)
Translates to: SRMKEGPGSGKQ*ANTNHVTGSAR
Trigger: ACGCGCACTTCCAGTGACATGATTGGTGTTAGCCCACTGTTTACCACTGCCGGGGCCTTCCTTCATCCTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp GAACAAATTTTACCATCCTCTTTCCCAGGCCTTCCCTCCCTGATGCCGCCCATTGCTGAGACCAGAAGCTaGCAGGGTGTGTTTTCCCAG +
Preference number: 3 (lower is better)
Translates to: EQILPSSFPGLPSLMPPIAETRS*QGVFSQ
Trigger: CTGGGAAAACACACCCTGCAAGCTTCTGGTCTCAGC...AATGGGCGGCATCAGGGAGGGAAGGCCTGGGAAAGAGGATGGTAAAATTTGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR TCA 72 bp AGAGTAGCACAAGCCAAGGAACTAGAACCCCTGCGGTaGAGGAAAGATGAACTTGTCACACCGTGGAGGTGC +
Preference number: 3 (lower is better)
Translates to: RVAQAKELEPLR*RKDELVTPWRC
Trigger: GCACCTCCACGGTGTGACAAGTTCATCTTTCCTTCACCGCAGGGGTTCTAGTTCCTTGGCTTGTGCTACTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR TCA 72 bp TGGGGCAGTTCTTCTCTGATCAGGGGTTGGGTACAGTaGGAGCACATCTCCTTCCTATCCTGTGTCTACTGC +
Preference number: 3 (lower is better)
Translates to: WGSSSLIRGWVQ*EHISFLSCVYC
Trigger: GCAGTAGACACAGGATAGGAAGGAGATGTGCTCTCACTGTACCCAACCCCTGATCAGAGAAGAACTGCCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp GAACAAATTTTACCATCCTCTTTCCCAGGCCTTCCCTCCCTGATGCCGCCCATTGGACACATATTGCTATaGTCACCAGTGACCGGGCAG +
Preference number: 3 (lower is better)
Translates to: EQILPSSFPGLPSLMPPIGHILL*SPVTGQ
Trigger: CTGCCCGGTCACTGGTGACAATAGCAATATGTGTCC...AATGGGCGGCATCAGGGAGGGAAGGCCTGGGAAAGAGGATGGTAAAATTTGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp AGTGAGAGGTTTGGCCTAGGGAAAGAGCCACCTTTCTTCTGTTTGGTAGGCCCAGGACACATATTGCTATaGTCACCAGTGACCGGGCAG +
Preference number: 3 (lower is better)
Translates to: SERFGLGKEPPFFCLVGPGHILL*SPVTGQ
Trigger: CTGCCCGGTCACTGGTGACAATAGCAATATGTGTCC...TGGGCCTACCAAACAGAAGAAAGGTGGCTCTTTCCCTAGGCCAAACCTCTCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp AGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGAGGGTCCCTGGACACATATaGCTATTGTCACCAGTGACC +
Preference number: 3 (lower is better)
Translates to: RRIVLEASVRGRLWMNQRVPGHI*LLSPVT
Trigger: GGTCACTGGTGACAATAGCAATATGTGTCCAGGGAC...CCTCTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp GATCAGGGGTTGGGTACAGTGAGAGCACATCTCCTTCCTATCCTGTGTCTACTGCATGGGAAATACTCTTaGAGGGCAGCCAGACTCCTG +
Preference number: 3 (lower is better)
Translates to: DQGLGTVRAHLLPILCLLHGKYS*RAARLL
Trigger: CAGGAGTCTGGCTGCCCTCAAAGAGTATTTCCCATG...CAGTAGACACAGGATAGGAAGGAGATGTGCTCTCACTGTACCCAACCCCTGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp ACCAGAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTACGATGAAACTGTTTTaGAGACGCCACAGGGACATG +
Preference number: 3 (lower is better)
Translates to: TRSLQGVFSQRLGVCLDCTMKLF*RRHRDM
Trigger: CATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGT...ACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp TCGGTAGAAAAGCCCAGTTTGTCTTTCAGTGCGCGAACATCATGCCCTGTGCTGGTCCCTGGACACATATaGCTATTGTCACCAGTGACC +
Preference number: 3 (lower is better)
Translates to: SVEKPSLSFSARTSCPVLVPGHI*LLSPVT
Trigger: GGTCACTGGTGACAATAGCAATATGTGTCCAGGGAC...CAGCACAGGGCATGATGTTCGCGCACTGAAAGACAAACTGGGCTTTTCTACCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp ACTTATCAGGAACGATGCATGGTCCGCTTGTGTTCACTGCATTGCCTAGCCTGCCGTGCAACAGTGAGGTaGTGTAGATGTGTCACCAAC +
Preference number: 3 (lower is better)
Translates to: TYQERCMVRLCSLHCLACRATVR*CRCVTN
Trigger: GTTGGTGACACATCTACACAACCTCACTGTTGCACG...GCAGGCTAGGCAATGCAGTGAACACAAGCGGACCATGCATCGTTCCTGATAAGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp GATCAGGGGTTGGGTACAGTGAGAGCACATCTCCTTCCTATCCTGTGTCTACTGCGTGCAACAGTGAGGTaGTGTAGATGTGTCACCAAC +
Preference number: 3 (lower is better)
Translates to: DQGLGTVRAHLLPILCLLRATVR*CRCVTN
Trigger: GTTGGTGACACATCTACACAACCTCACTGTTGCACG...CAGTAGACACAGGATAGGAAGGAGATGTGCTCTCACTGTACCCAACCCCTGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp TCGGTAGAAAAGCCCAGTTTGTCTTTCAGTGCGCGAACATCATGCCCTGTGCTGGAAAGGCGTATTGTCTaGGAAGCATCAGTCAGGGGT +
Preference number: 3 (lower is better)
Translates to: SVEKPSLSFSARTSCPVLERRIV*EASVRG
Trigger: ACCCCTGACTGATGCTTCCAAGACAATACGCCTTTC...CAGCACAGGGCATGATGTTCGCGCACTGAAAGACAAACTGGGCTTTTCTACCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp AGAAAGCCAGCACAGGTGTCACTAGGAATCAGCTTTTGTCAGAGTAGGAGCAGGCTTGTGTTCACTGCATaGCCTAGCCTGCTAGCTACG +
Preference number: 3 (lower is better)
Translates to: RKPAQVSLGISFCQSRSRLVFTA*PSLLAT
Trigger: CGTAGCTAGCAGGCTAGGCAATGCAGTGAACACAAG...CCTGCTCCTACTCTGACAAAAGCTGATTCCTAGTGACACCTGTGCTGGCTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR TCA 72 bp TTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATaGACCAGAGGTGGGATGTGTAGTTTCTTCGTGTCC +
Preference number: 3 (lower is better)
Translates to: LSWKHQSGVGCG*TRGGMCSFFVS
Trigger: GGACACGAAGAAACTACACATCCCACCTCTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR GCA 72 bp CAGTTTCCCTGTGTTTTGTCTTCCGGAAACAGGCCCTaGGCACCCTTGCAGCGTTTCCTTTTGATACTGAGA +
Preference number: 3 (lower is better)
Translates to: QFPCVLSSGNRP*APLQRFLLILR
Trigger: TCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCGCAGGGCCTGTTTCCGGAAGACAAAACACAGGGAAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp TCTGGGGAGAAAACAAGGGAGAGTCAGAAGTTACACAGAGTCTACGCAGCAGCAGTCCCTGGACACATATaGCTATTGTCACCAGTGACC +
Preference number: 3 (lower is better)
Translates to: SGEKTRESQKLHRVYAAAVPGHI*LLSPVT
Trigger: GGTCACTGGTGACAATAGCAATATGTGTCCAGGGAC...TGCTGCTGCGTAGACTCTGTGTAACTTCTGACTCTCCCTTGTTTTCTCCCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR CAA 90 bp AGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGAGGTACATGGCCAACCACTaGAAATGTGTGGGCTTTTCA +
Preference number: 3 (lower is better)
Translates to: RRIVLEASVRGRLWMNQRYMANH*KCVGFS
Trigger: TGAAAAGCCCACACATTTCAAGTGGTTGGCCATGTA...CCTCTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp AGGGAGGGTGTGAAGGAAAAGGGAGCTGAGACCAGAAGCTTGCAGGGTGTGTTTTACATGGCCAACCACTaGAAATGTGTGGGCTTTTCA +
Preference number: 3 (lower is better)
Translates to: REGVKEKGAETRSLQGVFYMANH*KCVGFS
Trigger: TGAAAAGCCCACACATTTCAAGTGGTTGGCCATGTA...AAACACACCCTGCAAGCTTCTGGTCTCAGCTCCCTTTTCCTTCACACCCTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTGGACACATATTGCTATaGTCACCAGTGACCGGGCAG +
Preference number: 3 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSGHILL*SPVTGQ
Trigger: CTGCCCGGTCACTGGTGACAATAGCAATATGTGTCC...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp GCAACGTCACTTTCAAGGGTGCGGGAGAAAACTAATGCAAATCTTGGGTCTTCAGGACACATATTGCTATaGTCACCAGTGACCGGGCAG +
Preference number: 3 (lower is better)
Translates to: ATSLSRVREKTNANLGSSGHILL*SPVTGQ
Trigger: CTGCCCGGTCACTGGTGACAATAGCAATATGTGTCC...TGAAGACCCAAGATTTGCATTAGTTTTCTCCCGCACCCTTGAAAGTGACGTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR CAA 90 bp TCGGTAGAAAAGCCCAGTTTGTCTTTCAGTGCGCGAACATCATGCCCTGTGCTGTTTCAGGAAGACACCTaGCATATTCAGGTGTCCACA +
Preference number: 3 (lower is better)
Translates to: SVEKPSLSFSARTSCPVLFQEDT*HIQVST
Trigger: TGTGGACACCTGAATATGCAAGGTGTCTTCCTGAAA...CAGCACAGGGCATGATGTTCGCGCACTGAAAGACAAACTGGGCTTTTCTACCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR GCA 72 bp CCACTTGAAATGTGTGGGCTTTTCAGGAAGACACCTTaGATATTCAGGTGTCCACATGCGTCTGAGAATCCC +
Preference number: 3 (lower is better)
Translates to: PLEMCGLFRKTP*IFRCPHASENP
Trigger: GGGATTCTCAGACGCATGTGGACACCTGAATATGCAAGGTGTCTTCCTGAAAAGCCCACACATTTCAAGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR GCA 72 bp CAGTGCAGCACACACCTAAGCTTAATGGTTTTTAGCTaGCCGCTGTTGGCCAGCTGGCTTTATTTTACCTCT +
Preference number: 3 (lower is better)
Translates to: QCSTHLSLMVFS*PLLASWLYFTS
Trigger: AGAGGTAAAATAAAGCCAGCTGGCCAACAGCGGGCAGCTAAAAACCATTAAGCTTAGGTGTGTGCTGCACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR CCA 72 bp GCTAGGCAAACGATGACTAACGGGCATGAAGATGTCTaGGGAGAAAACAAGGGAGAGTCAGAAGTTACACAG +
Preference number: 3 (lower is better)
Translates to: ARQTMTNGHEDV*GENKGESEVTQ
Trigger: CTGTGTAACTTCTGACTCTCCCTTGTTTTCTCCCCAGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR CCA 72 bp TCTGGGGTTAGGATCAGTAAGGTTTGCTGTCGTTTTTaGAGCGTTTCAGCTGCACCTTCAAGCGTTTCATGC +
Preference number: 3 (lower is better)
Translates to: SGVRISKVCCRF*SVSAAPSSVSC
Trigger: GCATGAAACGCTTGAAGGTGCAGCTGAAACGCTCCAAAAACGACAGCAAACCTTACTGATCCTAACCCCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
3UTR-3UTR CAA 90 bp CAAGGGAGAGTCAGAAGTTACACAGAGTCTACGCAGCAGCAACGTCACTTTCAAACGATGAAACTGTTTTaGAGACGCCACAGGGACATG +
Preference number: 3 (lower is better)
Translates to: QGRVRSYTESTQQQRHFQTMKLF*RRHRDM
Trigger: CATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGT...TTGAAAGTGACGTTGCTGCTGCGTAGACTCTGTGTAACTTCTGACTCTCCCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR CAA 90 bp CACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATAGGACACATATTGCTATaGTCACCAGTGACCGGGCAG +
Preference number: 3 (lower is better)
Translates to: HQHDAAYSSLSPVHWNSIGHILL*SPVTGQ
Trigger: CTGCCCGGTCACTGGTGACAATAGCAATATGTGTCC...TATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp AGGGAGGGTGTGAAGGAAAAGGGAGCTGAGACCAGAAGCTTGCAGGGTGTGTTTGCATTAAACCATGGATaGTCTAACTGTGAGTCAGTT +
Preference number: 3 (lower is better)
Translates to: REGVKEKGAETRSLQGVFALNHG*SNCESV
Trigger: AACTGACTCACAGTTAGACAATCCATGGTTTAATGC...AAACACACCCTGCAAGCTTCTGGTCTCAGCTCCCTTTTCCTTCACACCCTCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp ACTTATCAGGAACGATGCATGGTCCGCTTGTGTTCACTGCATTGCCTAGCCTGCAGACTTAAGGGTTTTTaGGGAAGGTGTGTGACTCAA +
Preference number: 3 (lower is better)
Translates to: TYQERCMVRLCSLHCLACRLKGF*GRCVTQ
Trigger: TTGAGTCACACACCTTCCCAAAAAACCCTTAAGTCT...GCAGGCTAGGCAATGCAGTGAACACAAGCGGACCATGCATCGTTCCTGATAAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp AGAAAGCCAGCACAGGTGTCACTAGGAATCAGCTTTTGTCAGAGTAGGAGCAGGTACATGGCCAACCACTaGAAATGTGTGGGCTTTTCA +
Preference number: 3 (lower is better)
Translates to: RKPAQVSLGISFCQSRSRYMANH*KCVGFS
Trigger: TGAAAAGCCCACACATTTCAAGTGGTTGGCCATGTA...CCTGCTCCTACTCTGACAAAAGCTGATTCCTAGTGACACCTGTGCTGGCTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp CGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACAGTCTGTCTCACAACTGGTATTCTCTaGTGTTTCTACACGTGTACC +
Preference number: 3 (lower is better)
Translates to: RTLAAFPFDTERGRTVCLTTGIL*CFYTCT
Trigger: GGTACACGTGTAGAAACACAAGAGAATACCAGTTGT...GAGACAGACTGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp CACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATAGTCCCTGGACACATATaGCTATTGTCACCAGTGACC +
Preference number: 3 (lower is better)
Translates to: HQHDAAYSSLSPVHWNSIVPGHI*LLSPVT
Trigger: GGTCACTGGTGACAATAGCAATATGTGTCCAGGGAC...TATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp CGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACAGTCTGTCTCGCATTAAACCATGGATaGTCTAACTGTGAGTCAGTT +
Preference number: 3 (lower is better)
Translates to: RTLAAFPFDTERGRTVCLALNHG*SNCESV
Trigger: AACTGACTCACAGTTAGACAATCCATGGTTTAATGC...GAGACAGACTGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp ACCAGAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTAAGTACCTTTGGAATTaGGCACTAGATAGTTTTCAC +
Preference number: 3 (lower is better)
Translates to: TRSLQGVFSQRLGVCLDCKYLWN*ALDSFH
Trigger: GTGAAAACTATCTAGTGCCAAATTCCAAAGGTACTT...ACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp TTAAAAATGCAGTTTCCCTGTGTTTTGTCTTCCGGAAACAGGCCCTGCGCACCCAGACTTAAGGGTTTTTaGGGAAGGTGTGTGACTCAA +
Preference number: 3 (lower is better)
Translates to: LKMQFPCVLSSGNRPCAPRLKGF*GRCVTQ
Trigger: TTGAGTCACACACCTTCCCAAAAAACCCTTAAGTCT...GGGTGCGCAGGGCCTGTTTCCGGAAGACAAAACACAGGGAAACTGCATTTTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp GAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTAGTCCTAGACTTAAGGGTTTTTaGGGAAGGTGTGTGACTCAA +
Preference number: 3 (lower is better)
Translates to: EARLRNMALSRATAGTSPRLKGF*GRCVTQ
Trigger: TTGAGTCACACACCTTCCCAAAAAACCCTTAAGTCT...AGGACTAGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp AGAAAGCCAGCACAGGTGTCACTAGGAATCAGCTTTTGTCAGAGTAGGAGCAGGACAACTGGTATTCTCTaGTGTTTCTACACGTGTACC +
Preference number: 3 (lower is better)
Translates to: RKPAQVSLGISFCQSRSRTTGIL*CFYTCT
Trigger: GGTACACGTGTAGAAACACAAGAGAATACCAGTTGT...CCTGCTCCTACTCTGACAAAAGCTGATTCCTAGTGACACCTGTGCTGGCTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR TCA 72 bp ATTCACACACACATTAAATCAAATGGAGGGAGGGTGTaGAGGAAAAGGGAGCTGAGACCAGAAGCTTGCAGG +
Preference number: 3 (lower is better)
Translates to: IHTHIKSNGGRV*RKRELRPEACR
Trigger: CCTGCAAGCTTCTGGTCTCAGCTCCCTTTTCCTTCACACCCTCCCTCCATTTGATTTAATGTGTGTGTGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR TCA 72 bp CAAGGGACAGCGGAGAGGGTCCAGTTTGAACAAAGGTaGCATATGGGGAAGTCAAGACAACTGAATCGTAAA +
Preference number: 3 (lower is better)
Translates to: QGTAERVQFEQR*HMGKSRQLNRK
Trigger: TTTACGATTCAGTTGTCTTGACTTCCCCATATGTCACCTTTGTTCAAACTGGACCCTCTCCGCTGTCCCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR CCA 72 bp GGAAGTAGTCTGTTAGAAACCAACATTCTGTGTCCCTaGACACATATTGCTATTGTCACCAGTGACCGGGCA +
Preference number: 3 (lower is better)
Translates to: GSSLLETNILCP*THIAIVTSDRA
Trigger: TGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACTACTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp ACCAGTGACCGGGCAGAATGCCAATCCCTGTGTAATACTTTCAAGTCTGTTTTAACGATGAAACTGTTTTaGAGACGCCACAGGGACATG +
Preference number: 3 (lower is better)
Translates to: TSDRAECQSLCNTFKSVLTMKLF*RRHRDM
Trigger: CATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGT...TAAAACAGACTTGAAAGTATTACACAGGGATTGGCATTCTGCCCGGTCACTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCGTCCCTGGACACATATaGCTATTGTCACCAGTGACC +
Preference number: 3 (lower is better)
Translates to: SLLETNILCPWTHIAIVTVPGHI*LLSPVT
Trigger: GGTCACTGGTGACAATAGCAATATGTGTCCAGGGAC...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp TGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATGCATTAAACCATGGATaGTCTAACTGTGAGTCAGTT +
Preference number: 3 (lower is better)
Translates to: CVPGHILLLSPVTGQNANALNHG*SNCESV
Trigger: AACTGACTCACAGTTAGACAATCCATGGTTTAATGC...ATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp CGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACAGTCTGTCTCAAACTTCTTGAAAGATaGGACCACCAAAAAGCCATT +
Preference number: 3 (lower is better)
Translates to: RTLAAFPFDTERGRTVCLKLLER*DHQKAI
Trigger: AATGGCTTTTTGGTGGTCCAATCTTTCAAGAAGTTT...GAGACAGACTGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp ACTTATCAGGAACGATGCATGGTCCGCTTGTGTTCACTGCATTGCCTAGCCTGCCTTAAAGACACTGCTTaGAGAAAGAATCACATTCAC +
Preference number: 3 (lower is better)
Translates to: TYQERCMVRLCSLHCLACLKDTA*RKNHIH
Trigger: GTGAATGTGATTCTTTCTCAAAGCAGTGTCTTTAAG...GCAGGCTAGGCAATGCAGTGAACACAAGCGGACCATGCATCGTTCCTGATAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp AGGATCAGTAAGGTTTGCTGTCGTTTTTGGAGCGTTTCAGCTGCACCTTCAAGCACAAAACCAAAGCACTaGCTCAGATTGGTCTGTTTG +
Preference number: 3 (lower is better)
Translates to: RISKVCCRFWSVSAAPSSTKPKH*LRLVCL
Trigger: CAAACAGACCAATCTGAGCAAGTGCTTTGGTTTTGT...GCTTGAAGGTGCAGCTGAAACGCTCCAAAAACGACAGCAAACCTTACTGATCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
3UTR GCA 72 bp GAAAAGCCCAGTTTGTCTTTCAGTGCGCGAACATCATaGCCTGTGCTGAATGGTGGTCATATTAGGATTTCA +
Preference number: 3 (lower is better)
Translates to: EKPSLSFSARTS*PVLNGGHIRIS
Trigger: TGAAATCCTAATATGACCACCATTCAGCACAGGGCATGATGTTCGCGCACTGAAAGACAAACTGGGCTTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR CCA 72 bp AAGACATCTGCTCATATGAAGCCAGACTCAGGAATATaGCACTTTCGAGAGCAACAGCAGGAACTAGTCCTA +
Preference number: 3 (lower is better)
Translates to: KTSAHMKPDSGI*HFREQQQELVL
Trigger: TAGGACTAGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTCATATGAGCAGATGTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp GAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTAGTCCTAAGTACCTTTGGAATTaGGCACTAGATAGTTTTCAC +
Preference number: 3 (lower is better)
Translates to: EARLRNMALSRATAGTSPKYLWN*ALDSFH
Trigger: GTGAAAACTATCTAGTGCCAAATTCCAAAGGTACTT...AGGACTAGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp TCATATGAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTAGACTTAAGGGTTTTTaGGGAAGGTGTGTGACTCAA +
Preference number: 3 (lower is better)
Translates to: SYEARLRNMALSRATAGTRLKGF*GRCVTQ
Trigger: TTGAGTCACACACCTTCCCAAAAAACCCTTAAGTCT...AGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTCATATGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp GGATGTGTAGTTTCTTCGTGTCCCAAATCAGATATTCACTTAGGTGGAATCGACGTAGAAAAGCCCAGTTaGTCTTTCAGTGCGCGAACA +
Preference number: 3 (lower is better)
Translates to: GCVVSSCPKSDIHLGGIDVEKPS*SFSART
Trigger: TGTTCGCGCACTGAAAGACAAACTGGGCTTTTCTAC...GTCGATTCCACCTAAGTGAATATCTGATTTGGGACACGAAGAAACTACACATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp ATTATGAAGAGAATACATTGTGAGGGCTGCCGTCACAGCATTGACGTGGAGAGGAAACTAATGCAAATCTaGGGTCTTCAGGGAGTCTAT +
Preference number: 3 (lower is better)
Translates to: IMKRIHCEGCRHSIDVERKLMQI*GLQGVY
Trigger: ATAGACTCCCTGAAGACCCAAGATTTGCATTAGTTT...CCTCTCCACGTCAATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTCATAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR TCA 72 bp TCAGGACTTTCTCACCTTAGAGGTTTCCAGATATTATaGAGAGAATACATTGTGAGGGCTGCCGTCACAGCA +
Preference number: 3 (lower is better)
Translates to: SGLSHLRGFQIL*REYIVRAAVTA
Trigger: TGCTGTGACGGCAGCCCTCACAATGTATTCTCTTCATAATATCTGGAAACCTCTAAGGTGAGAAAGTCCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR TCA 72 bp GGGAAAAGCATGAACTTTAGGTCTAGGGTTCAACGGTaGAAAAAGCCCATTCCTAGAACAATTCCTCTGGAG +
Preference number: 3 (lower is better)
Translates to: GKSMNFRSRVQR*KKPIPRTIPLE
Trigger: CTCCAGAGGAATTGTTCTAGGAATGGGCTTTTTTCACCGTTGAACCCTAGACCTAAAGTTCATGCTTTTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
3UTR-3UTR CAA 90 bp ATTATGAAGAGAATACATTGTGAGGGCTGCCGTCACAGCATTGACGTGGAGAGGAAACTTCTTGAAAGATaGGACCACCAAAAAGCCATT +
Preference number: 3 (lower is better)
Translates to: IMKRIHCEGCRHSIDVERKLLER*DHQKAI
Trigger: AATGGCTTTTTGGTGGTCCAATCTTTCAAGAAGTTT...CCTCTCCACGTCAATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTCATAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp GGATGTGTAGTTTCTTCGTGTCCCAAATCAGATATTCACTTAGGTGGAATCGACTTTCAGGAAGACACCTaGCATATTCAGGTGTCCACA +
Preference number: 3 (lower is better)
Translates to: GCVVSSCPKSDIHLGGIDFQEDT*HIQVST
Trigger: TGTGGACACCTGAATATGCAAGGTGTCTTCCTGAAA...GTCGATTCCACCTAAGTGAATATCTGATTTGGGACACGAAGAAACTACACATCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp CACTTTCGAGAGCAACAGCAGGAACTAGTCCTAGTATTTGGTAGTAATTGTGGTTACATGGCCAACCACTaGAAATGTGTGGGCTTTTCA +
Preference number: 3 (lower is better)
Translates to: HFREQQQELVLVFGSNCGYMANH*KCVGFS
Trigger: TGAAAAGCCCACACATTTCAAGTGGTTGGCCATGTA...ACCACAATTACTACCAAATACTAGGACTAGTTCCTGCTGTTGCTCTCGAAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR GCA 72 bp TTTCCAGATATTATGAAGAGAATACATTGTGAGGGCTaGCGTCACAGCATTGACGTGGAGAGGTTAGAAAAG +
Preference number: 3 (lower is better)
Translates to: FPDIMKRIHCEG*RHSIDVERLEK
Trigger: CTTTTCTAACCTCTCCACGTCAATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTCATAATATCTGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp TTCTTGAAAGATTGGACCACCAAAAAGCCATTTAACTCCAGGGTGTATAAAAATGGACACATATTGCTATaGTCACCAGTGACCGGGCAG +
Preference number: 3 (lower is better)
Translates to: FLKDWTTKKPFNSRVYKNGHILL*SPVTGQ
Trigger: CTGCCCGGTCACTGGTGACAATAGCAATATGTGTCC...ATTTTTATACACCCTGGAGTTAAATGGCTTTTTGGTGGTCCAATCTTTCAAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTAAGTACCTTTGGAATTaGGCACTAGATAGTTTTCAC +
Preference number: 3 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSKYLWN*ALDSFH
Trigger: GTGAAAACTATCTAGTGCCAAATTCCAAAGGTACTT...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp GGATGTGTAGTTTCTTCGTGTCCCAAATCAGATATTCACTTAGGTGGAATCGACAGACTTAAGGGTTTTTaGGGAAGGTGTGTGACTCAA +
Preference number: 3 (lower is better)
Translates to: GCVVSSCPKSDIHLGGIDRLKGF*GRCVTQ
Trigger: TTGAGTCACACACCTTCCCAAAAAACCCTTAAGTCT...GTCGATTCCACCTAAGTGAATATCTGATTTGGGACACGAAGAAACTACACATCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR TCA 72 bp ACAGTGAGGTTGTGTAGATGTGTCACCAACACAGAATaGTTACCAACAATACAACACGCAGAGAGAGAAACA +
Preference number: 3 (lower is better)
Translates to: TVRLCRCVTNTE*LPTIQHAERET
Trigger: TGTTTCTCTCTCTGCGTGTTGTATTGTTGGTAATCATTCTGTGTTGGTGACACATCTACACAACCTCACTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp TTCTTGAAAGATTGGACCACCAAAAAGCCATTTAACTCCAGGGTGTATAAAAATGTCCCTGGACACATATaGCTATTGTCACCAGTGACC +
Preference number: 3 (lower is better)
Translates to: FLKDWTTKKPFNSRVYKNVPGHI*LLSPVT
Trigger: GGTCACTGGTGACAATAGCAATATGTGTCCAGGGAC...ATTTTTATACACCCTGGAGTTAAATGGCTTTTTGGTGGTCCAATCTTTCAAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCGCATTAAACCATGGATaGTCTAACTGTGAGTCAGTT +
Preference number: 3 (lower is better)
Translates to: SLLETNILCPWTHIAIVTALNHG*SNCESV
Trigger: AACTGACTCACAGTTAGACAATCCATGGTTTAATGC...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp ACAAATAACATTAAGACCTTAAGACTTGTGATGAGAGCACAACTTAATCCACAGACGATGAAACTGTTTTaGAGACGCCACAGGGACATG +
Preference number: 3 (lower is better)
Translates to: TNNIKTLRLVMRAQLNPQTMKLF*RRHRDM
Trigger: CATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGT...CTGTGGATTAAGTTGTGCTCTCATCACAAGTCTTAAGGTCTTAATGTTATTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR-3UTR CAA 90 bp CATAGAGAAATAACAAACAATAACAATTTCAGGCAACAAGACCACGGAATAGCAACGATGAAACTGTTTTaGAGACGCCACAGGGACATG +
Preference number: 3 (lower is better)
Translates to: HREITNNNNFRQQDHGIATMKLF*RRHRDM
Trigger: CATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGT...TGCTATTCCGTGGTCTTGTTGCCTGAAATTGTTATTGTTTGTTATTTCTCTATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR TCA 72 bp ACACAACATAAAGAAAAGAACAGATACGTGCAACAGTaGGGTTGTGTAGATGTGTCACCAACACAGAATGAT +
Preference number: 3 (lower is better)
Translates to: TQHKEKNRYVQQ*GCVDVSPTQND
Trigger: ATCATTCTGTGTTGGTGACACATCTACACAACCTCACTGTTGCACGTATCTGTTCTTTTCTTTATGTTGTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR GCA 72 bp AATAGAAATGCACTTCTATACATACCCATTGATCAGTaGAGCACACACCTAAGCTTAATGGTTTTTAGCTGC +
Preference number: 3 (lower is better)
Translates to: NRNALLYIPIDQ*STHLSLMVFSC
Trigger: GCAGCTAAAAACCATTAAGCTTAGGTGTGTGCTGCACTGATCAATGGGTATGTATAGAAGTGCATTTCTATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR CCA 72 bp GGTGGTCATATTAGGATTTCAAAAAGAAACACATCTTaGAACAAATTTTACCATCCTCTTTCCCAGGCCTTC +
Preference number: 3 (lower is better)
Translates to: GGHIRISKRNTS*NKFYHPLSQAF
Trigger: GAAGGCCTGGGAAAGAGGATGGTAAAATTTGTTCCAAGATGTGTTTCTTTTTGAAATCCTAATATGACCACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR CCA 72 bp GTTAAGATACCATTTTCACTCGATAGAAACGGTTCATaGTCACATGAAGGTAATATCTCCAGTGAATTTGCC +
Preference number: 3 (lower is better)
Translates to: VKIPFSLDRNGS*SHEGNISSEFA
Trigger: GGCAAATTCACTGGAGATATTACCTTCATGTGACCATGAACCGTTTCTATCGAGTGAAAATGGTATCTTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR CCA 72 bp GTAAGGATATTCAAATTGCAAACAAAGAGAATACAGTaGCACAACCGGAGGAGGGGTTTACTCAATAAAAAC +
Preference number: 3 (lower is better)
Translates to: VRIFKLQTKRIQ*HNRRRGLLNKN
Trigger: GTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTATTCTCTTTGTTTGCAATTTGAATATCCTTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
3UTR-3UTR CAA 90 bp ATGGTCTATGAAATACAACTGGTATTCTCTTGTGTTTCTACACGTGTACCTACAGCATTAAACCATGGATaGTCTAACTGTGAGTCAGTT +
Preference number: 3 (lower is better)
Translates to: MVYEIQLVFSCVSTRVPTALNHG*SNCESV
Trigger: AACTGACTCACAGTTAGACAATCCATGGTTTAATGC...TGTAGGTACACGTGTAGAAACACAAGAGAATACCAGTTGTATTTCATAGACCAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp ATGGTCTATGAAATACAACTGGTATTCTCTTGTGTTTCTACACGTGTACCTACAAAGTACCTTTGGAATTaGGCACTAGATAGTTTTCAC +
Preference number: 3 (lower is better)
Translates to: MVYEIQLVFSCVSTRVPTKYLWN*ALDSFH
Trigger: GTGAAAACTATCTAGTGCCAAATTCCAAAGGTACTT...TGTAGGTACACGTGTAGAAACACAAGAGAATACCAGTTGTATTTCATAGACCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR-3UTR CAA 90 bp CATAGAGAAATAACAAACAATAACAATTTCAGGCAACAAGACCACGGAATAGCAAAGTACCTTTGGAATTaGGCACTAGATAGTTTTCAC +
Preference number: 3 (lower is better)
Translates to: HREITNNNNFRQQDHGIAKYLWN*ALDSFH
Trigger: GTGAAAACTATCTAGTGCCAAATTCCAAAGGTACTT...TGCTATTCCGTGGTCTTGTTGCCTGAAATTGTTATTGTTTGTTATTTCTCTATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR CCA 72 bp AGTTTCTTCGTGTCCCAAATCAGATATTCACTTAGGTaGAATCGACTGTATCTTTTTACACAACATAAAGAA +
Preference number: 3 (lower is better)
Translates to: SFFVSQIRYSLR*NRLYLFTQHKE
Trigger: TTCTTTATGTTGTGTAAAAAGATACAGTCGATTCCACCTAAGTGAATATCTGATTTGGGACACGAAGAAACT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR TCA 90 bp GGGCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGCTCTGGGGAGGGTTCTaGCTCCGGTCCCGGAGGACG +
Preference number: 4 (lower is better)
Translates to: GRAGRRVSSPGSALGAPVLWGGF*LRSRRT
Trigger: CGTCCTCCGGGACCGGAGTCAGAACCCTCCCCAGAG...CACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp GGGCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGGTTGCTGGAGGAGGTaGCCTGCTGCAGAAGCGCCA +
Preference number: 4 (lower is better)
Translates to: GRAGRRVSSPGSALGAPVGCWRR*PAAEAP
Trigger: TGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAACC...CACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGCTCTGGGGAGGGTTCTaGCTCCGGTCCCGGAGGACG +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQLWGGF*LRSRRT
Trigger: CGTCCTCCGGGACCGGAGTCAGAACCCTCCCCAGAG...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp GCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTGGGTCAGGGCGTCCATaGTGCCAGCCGTACCATTCG +
Preference number: 4 (lower is better)
Translates to: AGGQEGEFSRQCSRGTSGGSGRP*CQPYHS
Trigger: CGAATGGTACGGCTGGCACCATGGACGCCCTGACCC...ACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp GGGCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGGTTTGAGCAGCAGCTaGAGCAGCAGCCAGTGTTGC +
Preference number: 4 (lower is better)
Translates to: GRAGRRVSSPGSALGAPVGLSSS*SSSQCC
Trigger: GCAACACTGGCTGCTGCTGCAGCTGCTGCTCAAACC...CACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp GCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTGCTGTGCAAGCTGCTaGTGGAGGCGCCTTTGCTCT +
Preference number: 4 (lower is better)
Translates to: AGGQEGEFSRQCSRGTSGCCASC*WRRLCS
Trigger: AGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCA...ACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp GCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTATCTGCTGTGCAAGCTaGTGCTGGAGGCGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: AGGQEGEFSRQCSRGTSGICCAS*CWRRLC
Trigger: GCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGAT...ACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp GGGCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGACCTTCCTTCTGGCTaGCTGCAGCACTCTGCTGTT +
Preference number: 4 (lower is better)
Translates to: GRAGRRVSSPGSALGAPVDLPSG*LQHSAV
Trigger: AACAGCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTC...CACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000182851.8
CDS-3UTR CCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGGGTTGCTGGAGGAGGTaGCCTGCTGCAGAAGCGCCA +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQGCWRR*PAAEAP
Trigger: TGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAACC...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGGGGTCAGGGCGTCCATaGTGCCAGCCGTACCATTCG +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQGSGRP*CQPYHS
Trigger: CGAATGGTACGGCTGGCACCATGGACGCCCTGACCC...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp GGGCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGCAGTGTTGAGCTGTTaGATCTGCTGTGCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: GRAGRRVSSPGSALGAPVAVLSC*ICCASC
Trigger: GCAGCTTGCACAGCAGATGCAACAGCTCAACACTGC...CACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp GGGCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGCTGAATGCCACTGAATaGACCCAGGTTGCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: GRAGRRVSSPGSALGAPVLNATE*TQVAGG
Trigger: TCCTCCAGCAACCTGGGTGCATTCAGTGGCATTCAG...CACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp GCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTGTGCAAGCTGCTGCTaGAGGCGCCTTTGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: AGGQEGEFSRQCSRGTSGCASCC*RRLCSL
Trigger: CAAAGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACA...ACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGTGGCCGCACCAGCGGTaGAATTGGGGGTTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQWPHQR*NWGLKQ
Trigger: CTGCTTCAACCCCCAATTCCACCGCTGGTGCGGCCA...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGGGTCCCGGAGGACGTTaGTCTGGTAGACAGCTCCAT +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQGPGGR*SGRQLH
Trigger: ATGGAGCTGTCTACCAGATCAACGTCCTCCGGGACC...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGGGTTTGAGCAGCAGCTaGAGCAGCAGCCAGTGTTGC +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQGLSSS*SSSQCC
Trigger: GCAACACTGGCTGCTGCTGCAGCTGCTGCTCAAACC...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGTCAGGGCGTCCATGGTaGCAGCCGTACCATTCGTCA +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQSGRPW*QPYHSS
Trigger: TGACGAATGGTACGGCTGGCACCATGGACGCCCTGA...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp GCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTTGCATTGGTGCTGGTaGCTGAGGTTTGAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: AGGQEGEFSRQCSRGTSGLHWCW*LRFEQQ
Trigger: CTGCTGCTCAAACCTCAGCCACCAGCACCAATGCAA...ACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGCACCAGCGGTGGAATTaGGGGTTGAAGCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQHQRWN*GLKQPQ
Trigger: CTGTGGCTGCTTCAACCCCCAATTCCACCGCTGGTG...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp GTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTACAGCCACAGGGCTTGTaGGGGCTCCCAGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: VPPLPSLFRTGWLVGLTLQPQGL*GLPGHC
Trigger: GCAGTGCCCTGGGAGCCCTCACAAGCCCTGTGGCTG...TAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGGCAGCACTCTGCTGTTaGAGCAAGCTCTGGCTGTAC +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQAALCC*SKLWLY
Trigger: GTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGC...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp GGGCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGTTGGAGCGTTTCAGCTaGACCTTCAAGCGTTTCATG +
Preference number: 4 (lower is better)
Translates to: GRAGRRVSSPGSALGAPVLERFS*TFKRFM
Trigger: CATGAAACGCTTGAAGGTGCAGCTGAAACGCTCCAA...CACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp GGGCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTTGCTGTCGTTTTTaGAGCGTTTCAGCTGCACCT +
Preference number: 4 (lower is better)
Translates to: GRAGRRVSSPGSALGAPVVCCRF*SVSAAP
Trigger: AGGTGCAGCTGAAACGCTCCAAAAACGACAGCAAAC...CACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGATGCCAGCCATTTGCTaGATGCCACTGAATGCACCC +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQMPAIC*MPLNAP
Trigger: GGGTGCATTCAGTGGCATTCAGCAAATGGCTGGCAT...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp CAGGCCCTGCGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACACAGCCACAGGGCTTGTaGGGGCTCCCAGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: QALRTLAAFPFDTERGRTQPQGL*GLPGHC
Trigger: GCAGTGCCCTGGGAGCCCTCACAAGCCCTGTGGCTG...TGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCGCAGGGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp GGGCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGATGCATGGCTTTGATTaGATTCTGTGCCATTGCCCT +
Preference number: 4 (lower is better)
Translates to: GRAGRRVSSPGSALGAPVMHGFD*ILCHCP
Trigger: AGGGCAATGGCACAGAATGCAATCAAAGCCATGCAT...CACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGTTGAGCTGTTGCATCTaGTGTGCAAGCTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQLSCCI*CASCCW
Trigger: CCAGCAGCAGCTTGCACAGCAGATGCAACAGCTCAA...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTCTGGAGGAGGTGGCCTaGTGCAGAAGCGCCAGGTAC +
Preference number: 4 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTLEEVA*CRSARY
Trigger: GTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAG...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp GCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTTGGAGCGTTTCAGCTaGACCTTCAAGCGTTTCATG +
Preference number: 4 (lower is better)
Translates to: AGGQEGEFSRQCSRGTSGLERFS*TFKRFM
Trigger: CATGAAACGCTTGAAGGTGCAGCTGAAACGCTCCAA...ACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGAAGAGCAGCCCTCCATaGTCTGAGACTGATGCATGG +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQKSSPP*SETDAW
Trigger: CCATGCATCAGTCTCAGACCATGGAGGGCTGCTCTT...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGCATTCGTCAAGCCTGTaGCGCCAAGTCCTCCATTCA +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQHSSSL*RQVLHS
Trigger: TGAATGGAGGACTTGGCGCCACAGGCTTGACGAATG...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGACAAAACCTTCCTTCTaGCTGCCTGCAGCACTCTGC +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQTKPSF*LPAALC
Trigger: GCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTTTTGT...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp CCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCTCTGGGGAGGGTTCTaGCTCCGGTCCCGGAGGACG +
Preference number: 4 (lower is better)
Translates to: PLPSLFRTGWLVGLTLRKLWGGF*LRSRRT
Trigger: CGTCCTCCGGGACCGGAGTCAGAACCCTCCCCAGAG...CTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR TCA 90 bp ACCAGAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTCTCTGGGGAGGGTTCTaGCTCCGGTCCCGGAGGACG +
Preference number: 4 (lower is better)
Translates to: TRSLQGVFSQRLGVCLDCLWGGF*LRSRRT
Trigger: CGTCCTCCGGGACCGGAGTCAGAACCCTCCCCAGAG...ACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTCTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGTCTGGCTGGTCTGAATaGTCCAAAGCTCCGTTCATC +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQSGWSE*SKAPFI
Trigger: GATGAACGGAGCTTTGGATCATTCAGACCAGCCAGA...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp GCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTATGCATGGCTTTGATTaGATTCTGTGCCATTGCCCT +
Preference number: 4 (lower is better)
Translates to: AGGQEGEFSRQCSRGTSGMHGFD*ILCHCP
Trigger: AGGGCAATGGCACAGAATGCAATCAAAGCCATGCAT...ACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp GCACTCTGCTGTTGCAGCAAGCTCTGGCTGTACAAAGTGGGCAGTGCAGCTGCCGGTCCCGGAGGACGTTaGTCTGGTAGACAGCTCCAT +
Preference number: 4 (lower is better)
Translates to: ALCCCSKLWLYKVGSAAAGPGGR*SGRQLH
Trigger: ATGGAGCTGTCTACCAGATCAACGTCCTCCGGGACC...GGCAGCTGCACTGCCCACTTTGTACAGCCAGAGCTTGCTGCAACAGCAGAGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
CDS-3UTR TCA 90 bp GATCAGGGGTTGGGTACAGTGAGAGCACATCTCCTTCCTATCCTGTGTCTACTGCAGCCACAGGGCTTGTaGGGGCTCCCAGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: DQGLGTVRAHLLPILCLLQPQGL*GLPGHC
Trigger: GCAGTGCCCTGGGAGCCCTCACAAGCCCTGTGGCTG...CAGTAGACACAGGATAGGAAGGAGATGTGCTCTCACTGTACCCAACCCCTGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp GGCTGCCTGCAGCACTCTGCTGTTGCAGCAAGCTCTGGCTGTACAAAGTGGGCAATCTGCTGTGCAAGCTaGTGCTGGAGGCGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: GCLQHSAVAASSGCTKWAICCAS*CWRRLC
Trigger: GCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGAT...TGCCCACTTTGTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTCAGGGCGTCCATGGTaGCAGCCGTACCATTCGTCA +
Preference number: 4 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTSGRPW*QPYHSS
Trigger: TGACGAATGGTACGGCTGGCACCATGGACGCCCTGA...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGTTGGAGCGTTTCAGCTaGACCTTCAAGCGTTTCATG +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQLERFS*TFKRFM
Trigger: CATGAAACGCTTGAAGGTGCAGCTGAAACGCTCCAA...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp GTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAGGTCCCGGAGGACGTTaGTCTGGTAGACAGCTCCAT +
Preference number: 4 (lower is better)
Translates to: VPPLPSLFRTGWLVGLTLGPGGR*SGRQLH
Trigger: ATGGAGCTGTCTACCAGATCAACGTCCTCCGGGACC...TAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR TCA 90 bp GGGCGGGCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGTGGAAACCATTCCTATaGACAATTTTCTGTCTTCCA +
Preference number: 4 (lower is better)
Translates to: GRAGRRVSSPGSALGAPVWKPFL*TIFCLP
Trigger: TGGAAGACAGAAAATTGTTCATAGGAATGGTTTCCA...CACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGCCCGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp ATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAGCCACAGGGCTTGTaGGGGCTCCCAGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: ILCPWTHIAIVTSDRAECQPQGL*GLPGHC
Trigger: GCAGTGCCCTGGGAGCCCTCACAAGCCCTGTGGCTG...GCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAGAAGCGCCAGGTACTaGGGGGTAAGTCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: PSSAFPVQNRLACGTYPKRSARY*GVSPPS
Trigger: ACTGGGTGGACTTACCCCGCAGTACCTGGCGCTTCT...CTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp TCTGGCTGCCTGCAGCACTCTGCTGTTGCAGCAAGCTCTGGCTGTACAAAGTGGAGAAGCGCCAGGTACTaGGGGGTAAGTCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: SGCLQHSAVAASSGCTKWRSARY*GVSPPS
Trigger: ACTGGGTGGACTTACCCCGCAGTACCTGGCGCTTCT...CCACTTTGTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAGCCAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp GTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAGGTTTGAGCAGCAGCTaGAGCAGCAGCCAGTGTTGC +
Preference number: 4 (lower is better)
Translates to: VPPLPSLFRTGWLVGLTLGLSSS*SSSQCC
Trigger: GCAACACTGGCTGCTGCTGCAGCTGCTGCTCAAACC...TAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp GTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTATCAGGGCGTCCATGGTaGCAGCCGTACCATTCGTCA +
Preference number: 4 (lower is better)
Translates to: VPPLPSLFRTGWLVGLTLSGRPW*QPYHSS
Trigger: TGACGAATGGTACGGCTGGCACCATGGACGCCCTGA...TAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp ACCAGAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTGGTTGCTGGAGGAGGTaGCCTGCTGCAGAAGCGCCA +
Preference number: 4 (lower is better)
Translates to: TRSLQGVFSQRLGVCLDCGCWRR*PAAEAP
Trigger: TGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAACC...ACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp CCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGATGGCCGCACCAGCGGTaGAATTGGGGGTTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: PPLPSLFRTGWLVGLTLRWPHQR*NWGLKQ
Trigger: CTGCTTCAACCCCCAATTCCACCGCTGGTGCGGCCA...TCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR TCA 90 bp GAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTAGGCGGTCCCGGAGGACGTTaGTCTGGTAGACAGCTCCAT +
Preference number: 4 (lower is better)
Translates to: EACRVCFPRGWVCVWTVGGPGGR*SGRQLH
Trigger: ATGGAGCTGTCTACCAGATCAACGTCCTCCGGGACC...GCCTACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp GAGCTTCTGGGGTTAGGATCAGTAAGGTTTGCTGTCGTTTTTGGAGCGTTTCAGCTCTGGGGAGGGTTCTaGCTCCGGTCCCGGAGGACG +
Preference number: 4 (lower is better)
Translates to: ELLGLGSVRFAVVFGAFQLWGGF*LRSRRT
Trigger: CGTCCTCCGGGACCGGAGTCAGAACCCTCCCCAGAG...CTGAAACGCTCCAAAAACGACAGCAAACCTTACTGATCCTAACCCCAGAAGCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
CDS-3UTR TCA 90 bp ATTATGAAGAGAATACATTGTGAGGGCTGCCGTCACAGCATTGACGTGGAGAGGCAGCCACAGGGCTTGTaGGGGCTCCCAGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: IMKRIHCEGCRHSIDVERQPQGL*GLPGHC
Trigger: GCAGTGCCCTGGGAGCCCTCACAAGCCCTGTGGCTG...CCTCTCCACGTCAATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTCATAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp GTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTGCCCAGCCACAGGGCTTGTaGGGGCTCCCAGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: VKITVSLGKSWHRGPSSAQPQGL*GLPGHC
Trigger: GCAGTGCCCTGGGAGCCCTCACAAGCCCTGTGGCTG...GGCAGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTGCAGTGTTGAGCTGTTaGATCTGCTGTGCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTAVLSC*ICCASC
Trigger: GCAGCTTGCACAGCAGATGCAACAGCTCAACACTGC...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp CCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAGAAGCGCCAGGTACTaGGGGGTAAGTCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: PPLPSLFRTGWLVGLTLRRSARY*GVSPPS
Trigger: ACTGGGTGGACTTACCCCGCAGTACCTGGCGCTTCT...TCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp AGTGAGAGGTTTGGCCTAGGGAAAGAGCCACCTTTCTTCTGTTTGGTAGGCCCACTGGAGGAGGTGGCCTaGTGCAGAAGCGCCAGGTAC +
Preference number: 4 (lower is better)
Translates to: SERFGLGKEPPFFCLVGPLEEVA*CRSARY
Trigger: GTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAG...TGGGCCTACCAAACAGAAGAAAGGTGGCTCTTTCCCTAGGCCAAACCTCTCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp CGGGACGATGAAACTGTTTTTGAGACGCCACAGGGACATGCTAGGCAAACGATGCTGGAGGAGGTGGCCTaGTGCAGAAGCGCCAGGTAC +
Preference number: 4 (lower is better)
Translates to: RDDETVFETPQGHARQTMLEEVA*CRSARY
Trigger: GTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAG...CATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGTCCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp TGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATCCCTGGAGGAGGTGGCCTaGTGCAGAAGCGCCAGGTAC +
Preference number: 4 (lower is better)
Translates to: CPWTHIAIVTSDRAECQSLEEVA*CRSARY
Trigger: GTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAG...GGATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTCTGAATGCCACTGAATaGACCCAGGTTGCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTLNATE*TQVAGG
Trigger: TCCTCCAGCAACCTGGGTGCATTCAGTGGCATTCAG...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp GAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTAGGCGGTTTGAGCAGCAGCTaGAGCAGCAGCCAGTGTTGC +
Preference number: 4 (lower is better)
Translates to: EACRVCFPRGWVCVWTVGGLSSS*SSSQCC
Trigger: GCAACACTGGCTGCTGCTGCAGCTGCTGCTCAAACC...GCCTACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTGAGGGTTTGCATTGGTaGTGGTGGCTGAGGTTTGAG +
Preference number: 4 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTEGLHW*WWLRFE
Trigger: CTCAAACCTCAGCCACCAGCACCAATGCAAACCCTC...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp CGGGACGATGAAACTGTTTTTGAGACGCCACAGGGACATGCTAGGCAAACGATGGGTTGCTGGAGGAGGTaGCCTGCTGCAGAAGCGCCA +
Preference number: 4 (lower is better)
Translates to: RDDETVFETPQGHARQTMGCWRR*PAAEAP
Trigger: TGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAACC...CATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGTCCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTTGCATTGGTGCTGGTaGCTGAGGTTTGAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTLHWCW*LRFEQQ
Trigger: CTGCTGCTCAAACCTCAGCCACCAGCACCAATGCAA...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp CCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGTGGCCGCACCAGCGGTaGAATTGGGGGTTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: PLPSLFRTGWLVGLTLRKWPHQR*NWGLKQ
Trigger: CTGCTTCAACCCCCAATTCCACCGCTGGTGCGGCCA...CTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp CGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACAGTCTGTCTCGGGTCAGGGCGTCCATaGTGCCAGCCGTACCATTCG +
Preference number: 4 (lower is better)
Translates to: RTLAAFPFDTERGRTVCLGSGRP*CQPYHS
Trigger: CGAATGGTACGGCTGGCACCATGGACGCCCTGACCC...GAGACAGACTGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
CDS-3UTR CCA 90 bp CCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGTCTGGCTGTACAAAGTaGGCAGTGCAGCTGCCGCAT +
Preference number: 4 (lower is better)
Translates to: PSSAFPVQNRLACGTYPKSGCTK*AVQLPH
Trigger: ATGCGGCAGCTGCACTGCCCACTTTGTACAGCCAGA...CTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTACAAAACCTTCCTTCTaGCTGCCTGCAGCACTCTGC +
Preference number: 4 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTTKPSF*LPAALC
Trigger: GCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTTTTGT...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp GATGAAACTGTTTTTGAGACGCCACAGGGACATGCTAGGCAAACGATGACTAACCTCTGGGGAGGGTTCTaGCTCCGGTCCCGGAGGACG +
Preference number: 4 (lower is better)
Translates to: DETVFETPQGHARQTMTNLWGGF*LRSRRT
Trigger: CGTCCTCCGGGACCGGAGTCAGAACCCTCCCCAGAG...GTTAGTCATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp CCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGACCCAAGTGGCAGTGTTaGGCTGTTGCATCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: PPLPSLFRTGWLVGLTLRPKWQC*AVASAV
Trigger: CACAGCAGATGCAACAGCTCAACACTGCCACTTGGG...TCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR TCA 90 bp CCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGTTTGCTGAATGCCACTaGATGCACCCAGGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: PSSAFPVQNRLACGTYPKFAECH*MHPGCW
Trigger: CCAGCAACCTGGGTGCATTCAGTGGCATTCAGCAAA...CTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR TCA 90 bp GTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTATTTGCTGAATGCCACTaGATGCACCCAGGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: VPPLPSLFRTGWLVGLTLFAECH*MHPGCW
Trigger: CCAGCAACCTGGGTGCATTCAGTGGCATTCAGCAAA...TAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR TCA 90 bp AACCAATGTAGTGGGAGGGTGTTTTGTGGAGTTTTAAGTGCTTCTCCTGGCTTCCAGCCACAGGGCTTGTaGGGGCTCCCAGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: NQCSGRVFCGVLSASPGFQPQGL*GLPGHC
Trigger: GCAGTGCCCTGGGAGCCCTCACAAGCCCTGTGGCTG...GAAGCCAGGAGAAGCACTTAAAACTCCACAAAACACCCTCCCACTACATTGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTCAGCCACAGGGCTTGTaGGGGCTCCCAGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSQPQGL*GLPGHC
Trigger: GCAGTGCCCTGGGAGCCCTCACAAGCCCTGTGGCTG...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGATCTGCTGTGCAAGCTaGTGCTGGAGGCGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: PLPSLFRTGWLVGLTLRKICCAS*CWRRLC
Trigger: GCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGAT...CTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp CCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGTTGAGCTGTTGCATCTaGTGTGCAAGCTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: PSSAFPVQNRLACGTYPKLSCCI*CASCCW
Trigger: CCAGCAGCAGCTTGCACAGCAGATGCAACAGCTCAA...CTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp TCTGCTGTTGCAGCAAGCTCTGGCTGTACAAAGTGGGCAGTGCAGCTGCCGCATTTGAGCTGTTGCATCTaGTGTGCAAGCTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: SAVAASSGCTKWAVQLPHLSCCI*CASCCW
Trigger: CCAGCAGCAGCTTGCACAGCAGATGCAACAGCTCAA...ATGCGGCAGCTGCACTGCCCACTTTGTACAGCCAGAGCTTGCTGCAACAGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp GCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCTAAACTGGAGGAGGTGGCCTaGTGCAGAAGCGCCAGGTAC +
Preference number: 4 (lower is better)
Translates to: AFPVQNRLACGTYPKKAKLEEVA*CRSARY
Trigger: GTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAG...TTTAGCTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp TCTGGCTGCCTGCAGCACTCTGCTGTTGCAGCAAGCTCTGGCTGTACAAAGTGGGAGGGTTTGCATTGGTaGTGGTGGCTGAGGTTTGAG +
Preference number: 4 (lower is better)
Translates to: SGCLQHSAVAASSGCTKWEGLHW*WWLRFE
Trigger: CTCAAACCTCAGCCACCAGCACCAATGCAAACCCTC...CCACTTTGTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAGCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp ACCAGAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTTCAGGGCGTCCATGGTaGCAGCCGTACCATTCGTCA +
Preference number: 4 (lower is better)
Translates to: TRSLQGVFSQRLGVCLDCSGRPW*QPYHSS
Trigger: TGACGAATGGTACGGCTGGCACCATGGACGCCCTGA...ACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAGCAGCACTCTGCTGTTaGAGCAAGCTCTGGCTGTAC +
Preference number: 4 (lower is better)
Translates to: PPLPSLFRTGWLVGLTLRAALCC*SKLWLY
Trigger: GTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGC...TCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp GCGGGCAGGAGGGTGAGTTCTCCAGGCAGTGCTCTCGGGGCACCAGTGGTTCAGCAAAACCAAAGCACTTaGTCAGATTGGTCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: AGRRVSSPGSALGAPVVQQNQST*SDWSVC
Trigger: ACAAACAGACCAATCTGAGCAAGTGCTTTGGTTTTG...CTGAACCACTGGTGCCCCGAGAGCACTGCCTGGAGAACTCACCCTCCTGCCCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000182851.8
CDS-3UTR CCA 90 bp CCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAGAGCAGCCCTCCATaGTCTGAGACTGATGCATGG +
Preference number: 4 (lower is better)
Translates to: PSSAFPVQNRLACGTYPKKSSPP*SETDAW
Trigger: CCATGCATCAGTCTCAGACCATGGAGGGCTGCTCTT...CTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp TTGCAGCAAGCTCTGGCTGTACAAAGTGGGCAGTGCAGCTGCCGCATACTGCTGAAGAGCAGCCCTCCATaGTCTGAGACTGATGCATGG +
Preference number: 4 (lower is better)
Translates to: LQQALAVQSGQCSCRILLKSSPP*SETDAW
Trigger: CCATGCATCAGTCTCAGACCATGGAGGGCTGCTCTT...CAGCAGTATGCGGCAGCTGCACTGCCCACTTTGTACAGCCAGAGCTTGCTGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp CCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGATGTGCAAGCTGCTGCTaGAGGCGCCTTTGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: PPLPSLFRTGWLVGLTLRCASCC*RRLCSL
Trigger: CAAAGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACA...TCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp GAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTAGTCCTGGTTGCTGGAGGAGGTaGCCTGCTGCAGAAGCGCCA +
Preference number: 4 (lower is better)
Translates to: EARLRNMALSRATAGTSPGCWRR*PAAEAP
Trigger: TGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAACC...AGGACTAGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp GCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCTAAAGGTTGCTGGAGGAGGTaGCCTGCTGCAGAAGCGCCA +
Preference number: 4 (lower is better)
Translates to: AFPVQNRLACGTYPKKAKGCWRR*PAAEAP
Trigger: TGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAACC...TTTAGCTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp TGCCTGCAGCACTCTGCTGTTGCAGCAAGCTCTGGCTGTACAAAGTGGGCAGTGTTGCATTGGTGCTGGTaGCTGAGGTTTGAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: CLQHSAVAASSGCTKWAVLHWCW*LRFEQQ
Trigger: CTGCTGCTCAAACCTCAGCCACCAGCACCAATGCAA...CACTGCCCACTTTGTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTACAGAGGGTTTGCATTaGTGCTGGTGGCTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTTEGLH*CWWLRF
Trigger: AAACCTCAGCCACCAGCACCAATGCAAACCCTCTGT...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp CCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCACCAGCGGTGGAATTaGGGGTTGAAGCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: PLPSLFRTGWLVGLTLRKHQRWN*GLKQPQ
Trigger: CTGTGGCTGCTTCAACCCCCAATTCCACCGCTGGTG...CTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp TGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATCCTGGCCGCACCAGCGGTaGAATTGGGGGTTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: CPWTHIAIVTSDRAECQSWPHQR*NWGLKQ
Trigger: CTGCTTCAACCCCCAATTCCACCGCTGGTGCGGCCA...GGATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp GAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTAGTCCTGGGTCAGGGCGTCCATaGTGCCAGCCGTACCATTCG +
Preference number: 4 (lower is better)
Translates to: EARLRNMALSRATAGTSPGSGRP*CQPYHS
Trigger: CGAATGGTACGGCTGGCACCATGGACGCCCTGACCC...AGGACTAGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp CCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGTCTGGACCTTCCTTCTaGCTGCCTGCAGCACTCTGC +
Preference number: 4 (lower is better)
Translates to: PLPSLFRTGWLVGLTLRKSGPSF*LPAALC
Trigger: GCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTCCAGA...CTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
CDS-3UTR CCA 90 bp CGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACAGTCTGTCTCGAGGTTTGCCCCCTCTaGACCTTCCTTCTGGCTGCC +
Preference number: 4 (lower is better)
Translates to: RTLAAFPFDTERGRTVCLEVCPL*TFLLAA
Trigger: GGCAGCCAGAAGGAAGGTCCAGAGGGGGCAAACCTC...GAGACAGACTGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
CDS-3UTR CCA 90 bp CGGGACGATGAAACTGTTTTTGAGACGCCACAGGGACATGCTAGGCAAACGATGGAGGTTTGCCCCCTCTaGACCTTCCTTCTGGCTGCC +
Preference number: 4 (lower is better)
Translates to: RDDETVFETPQGHARQTMEVCPL*TFLLAA
Trigger: GGCAGCCAGAAGGAAGGTCCAGAGGGGGCAAACCTC...CATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGTCCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182851.8
3UTR CAA 72 bp CTAGGCGGTCCTAGAGGGATCAGAGGGAAAGGCGTATaGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGA +
Preference number: 4 (lower is better)
Translates to: LGGPRGIRGKGV*SWKHQSGVGCG
Trigger: TCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCTTTCCCTCTGATCCCTCTAGGACCGCCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR TCA 90 bp CACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATACTCTGGGGAGGGTTCTaGCTCCGGTCCCGGAGGACG +
Preference number: 4 (lower is better)
Translates to: HQHDAAYSSLSPVHWNSILWGGF*LRSRRT
Trigger: CGTCCTCCGGGACCGGAGTCAGAACCCTCCCCAGAG...TATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp CCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCCCAAGTGGCAGTGTTaGGCTGTTGCATCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: PLPSLFRTGWLVGLTLRKPKWQC*AVASAV
Trigger: CACAGCAGATGCAACAGCTCAACACTGCCACTTGGG...CTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR TCA 90 bp ACCAGTGACCGGGCAGAATGCCAATCCCTGTGTAATACTTTCAAGTCTGTTTTACAGCCACAGGGCTTGTaGGGGCTCCCAGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: TSDRAECQSLCNTFKSVLQPQGL*GLPGHC
Trigger: GCAGTGCCCTGGGAGCCCTCACAAGCCCTGTGGCTG...TAAAACAGACTTGAAAGTATTACACAGGGATTGGCATTCTGCCCGGTCACTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp AATAAGAGCAGGGAGCTTCTGGGGTTAGGATCAGTAAGGTTTGCTGTCGTTTTTCAGCCACAGGGCTTGTaGGGGCTCCCAGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: NKSRELLGLGSVRFAVVFQPQGL*GLPGHC
Trigger: GCAGTGCCCTGGGAGCCCTCACAAGCCCTGTGGCTG...AAAAACGACAGCAAACCTTACTGATCCTAACCCCAGAAGCTCCCTGCTCTTATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp TCGGTAGAAAAGCCCAGTTTGTCTTTCAGTGCGCGAACATCATGCCCTGTGCTGATCTGCTGTGCAAGCTaGTGCTGGAGGCGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: SVEKPSLSFSARTSCPVLICCAS*CWRRLC
Trigger: GCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGAT...CAGCACAGGGCATGATGTTCGCGCACTGAAAGACAAACTGGGCTTTTCTACCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp CGGGACGATGAAACTGTTTTTGAGACGCCACAGGGACATGCTAGGCAAACGATGATCTGCTGTGCAAGCTaGTGCTGGAGGCGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: RDDETVFETPQGHARQTMICCAS*CWRRLC
Trigger: GCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGAT...CATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGTCCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGATTGAGCTGTTGCATCTaGTGTGCAAGCTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: PPLPSLFRTGWLVGLTLRLSCCI*CASCCW
Trigger: CCAGCAGCAGCTTGCACAGCAGATGCAACAGCTCAA...TCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp TGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATCCAGAAGCGCCAGGTACTaGGGGGTAAGTCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: CPWTHIAIVTSDRAECQSRSARY*GVSPPS
Trigger: ACTGGGTGGACTTACCCCGCAGTACCTGGCGCTTCT...GGATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp ACTTATCAGGAACGATGCATGGTCCGCTTGTGTTCACTGCATTGCCTAGCCTGCAGAAGCGCCAGGTACTaGGGGGTAAGTCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: TYQERCMVRLCSLHCLACRSARY*GVSPPS
Trigger: ACTGGGTGGACTTACCCCGCAGTACCTGGCGCTTCT...GCAGGCTAGGCAATGCAGTGAACACAAGCGGACCATGCATCGTTCCTGATAAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp ATTATGAAGAGAATACATTGTGAGGGCTGCCGTCACAGCATTGACGTGGAGAGGCTGGAGGAGGTGGCCTaGTGCAGAAGCGCCAGGTAC +
Preference number: 4 (lower is better)
Translates to: IMKRIHCEGCRHSIDVERLEEVA*CRSARY
Trigger: GTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAG...CCTCTCCACGTCAATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTCATAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp GTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTGCCCTGGAGGAGGTGGCCTaGTGCAGAAGCGCCAGGTAC +
Preference number: 4 (lower is better)
Translates to: VKITVSLGKSWHRGPSSALEEVA*CRSARY
Trigger: GTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAG...GGCAGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp CCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGACTGAATGCCACTGAATaGACCCAGGTTGCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: PPLPSLFRTGWLVGLTLRLNATE*TQVAGG
Trigger: TCCTCCAGCAACCTGGGTGCATTCAGTGGCATTCAG...TCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp GAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTAGGCGAGGGTTTGCATTGGTaGTGGTGGCTGAGGTTTGAG +
Preference number: 4 (lower is better)
Translates to: EACRVCFPRGWVCVWTVGEGLHW*WWLRFE
Trigger: CTCAAACCTCAGCCACCAGCACCAATGCAAACCCTC...GCCTACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp TCGGTAGAAAAGCCCAGTTTGTCTTTCAGTGCGCGAACATCATGCCCTGTGCTGTCAGGGCGTCCATGGTaGCAGCCGTACCATTCGTCA +
Preference number: 4 (lower is better)
Translates to: SVEKPSLSFSARTSCPVLSGRPW*QPYHSS
Trigger: TGACGAATGGTACGGCTGGCACCATGGACGCCCTGA...CAGCACAGGGCATGATGTTCGCGCACTGAAAGACAAACTGGGCTTTTCTACCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp TGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATCCTCAGGGCGTCCATGGTaGCAGCCGTACCATTCGTCA +
Preference number: 4 (lower is better)
Translates to: CPWTHIAIVTSDRAECQSSGRPW*QPYHSS
Trigger: TGACGAATGGTACGGCTGGCACCATGGACGCCCTGA...GGATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp TGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATCCCTGCCTGCAGCACTCTaGTGTTGCAGCAAGCTCTGG +
Preference number: 4 (lower is better)
Translates to: CPWTHIAIVTSDRAECQSLPAAL*CCSKLW
Trigger: CCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAG...GGATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGGACCTTCCTTCTGGCTaGCTGCAGCACTCTGCTGTT +
Preference number: 4 (lower is better)
Translates to: PLPSLFRTGWLVGLTLRKDLPSG*LQHSAV
Trigger: AACAGCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTC...CTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
CDS-3UTR GCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTTGGAGCGTTTCAGCTaGACCTTCAAGCGTTTCATG +
Preference number: 4 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTLERFS*TFKRFM
Trigger: CATGAAACGCTTGAAGGTGCAGCTGAAACGCTCCAA...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp CAGGCCCTGCGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACAAAGAGCAGCCCTCCATaGTCTGAGACTGATGCATGG +
Preference number: 4 (lower is better)
Translates to: QALRTLAAFPFDTERGRTKSSPP*SETDAW
Trigger: CCATGCATCAGTCTCAGACCATGGAGGGCTGCTCTT...TGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCGCAGGGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
CDS-3UTR CCA 90 bp ATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACAAGGTAGCCCAGGGTTGCTGGAGGAGGTaGCCTGCTGCAGAAGCGCCA +
Preference number: 4 (lower is better)
Translates to: IQWHNRRRGLLNKNKVAQGCWRR*PAAEAP
Trigger: TGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAACC...CTGGGCTACCTTGTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp GTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTGCCGGTTGCTGGAGGAGGTaGCCTGCTGCAGAAGCGCCA +
Preference number: 4 (lower is better)
Translates to: VKITVSLGKSWHRGPSSAGCWRR*PAAEAP
Trigger: TGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAACC...GGCAGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp GTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAACAGAGGGTTTGCATTaGTGCTGGTGGCTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: VPPLPSLFRTGWLVGLTLTEGLH*CWWLRF
Trigger: AAACCTCAGCCACCAGCACCAATGCAAACCCTCTGT...TAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp GAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTAGTCCTTGGCCGCACCAGCGGTaGAATTGGGGGTTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: EARLRNMALSRATAGTSPWPHQR*NWGLKQ
Trigger: CTGCTTCAACCCCCAATTCCACCGCTGGTGCGGCCA...AGGACTAGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp CAGGGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGGGGTCAGGGCGTCCATaGTGCCAGCCGTACCATTCG +
Preference number: 4 (lower is better)
Translates to: QGHARQTMTNGHEDVLRKGSGRP*CQPYHS
Trigger: CGAATGGTACGGCTGGCACCATGGACGCCCTGACCC...CTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp AGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGAGGTCTGGCTGTACAAAGTaGGCAGTGCAGCTGCCGCAT +
Preference number: 4 (lower is better)
Translates to: RRIVLEASVRGRLWMNQRSGCTK*AVQLPH
Trigger: ATGCGGCAGCTGCACTGCCCACTTTGTACAGCCAGA...CCTCTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
3UTR CAA 72 bp GGAAACAGGCCCTGCGCACCCTTGCAGCGTTTCCTTTaGATACTGAGAGAGGAAGGACAGTCTGTCTCTGAG +
Preference number: 4 (lower is better)
Translates to: GNRPCAPLQRFL*ILREEGQSVSE
Trigger: CTCAGAGACAGACTGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCGCAGGGCCTGTTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
3UTR CAA 72 bp TCAGGAACGATGCATGGTCCGCTTGTGTTCACTGCATaGCCTAGCCTGCTAGCTACGAGCCTGCAGATCACA +
Preference number: 4 (lower is better)
Translates to: SGTMHGPLVFTA*PSLLATSLQIT
Trigger: TGTGATCTGCAGGCTCGTAGCTAGCAGGCTAGGCAATGCAGTGAACACAAGCGGACCATGCATCGTTCCTGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR TCA 90 bp ATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCGGTCCCGGAGGACGTTaGTCTGGTAGACAGCTCCAT +
Preference number: 4 (lower is better)
Translates to: ILCPWTHIAIVTSDRAECGPGGR*SGRQLH
Trigger: ATGGAGCTGTCTACCAGATCAACGTCCTCCGGGACC...GCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp TTAAAAATGCAGTTTCCCTGTGTTTTGTCTTCCGGAAACAGGCCCTGCGCACCCGGTCCCGGAGGACGTTaGTCTGGTAGACAGCTCCAT +
Preference number: 4 (lower is better)
Translates to: LKMQFPCVLSSGNRPCAPGPGGR*SGRQLH
Trigger: ATGGAGCTGTCTACCAGATCAACGTCCTCCGGGACC...GGGTGCGCAGGGCCTGTTTCCGGAAGACAAAACACAGGGAAACTGCATTTTTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
CDS-3UTR TCA 90 bp TCTGGGGAGAAAACAAGGGAGAGTCAGAAGTTACACAGAGTCTACGCAGCAGCAGGTCCCGGAGGACGTTaGTCTGGTAGACAGCTCCAT +
Preference number: 4 (lower is better)
Translates to: SGEKTRESQKLHRVYAAAGPGGR*SGRQLH
Trigger: ATGGAGCTGTCTACCAGATCAACGTCCTCCGGGACC...TGCTGCTGCGTAGACTCTGTGTAACTTCTGACTCTCCCTTGTTTTCTCCCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
CDS-3UTR TCA 90 bp CATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAAAACTCTGGGGAGGGTTCTaGCTCCGGTCCCGGAGGACG +
Preference number: 4 (lower is better)
Translates to: HARQTMTNGHEDVLRKLKLWGGF*LRSRRT
Trigger: CGTCCTCCGGGACCGGAGTCAGAACCCTCCCCAGAG...TTTTAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp GAAAGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGCCCAAGTGGCAGTGTTaGGCTGTTGCATCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: ERRIVLEASVRGRLWMNQPKWQC*AVASAV
Trigger: CACAGCAGATGCAACAGCTCAACACTGCCACTTGGG...CTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR TCA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCCAGCCACAGGGCTTGTaGGGGCTCCCAGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: SLLETNILCPWTHIAIVTQPQGL*GLPGHC
Trigger: GCAGTGCCCTGGGAGCCCTCACAAGCCCTGTGGCTG...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp CATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAAAACAGCCACAGGGCTTGTaGGGGCTCCCAGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: HARQTMTNGHEDVLRKLKQPQGL*GLPGHC
Trigger: GCAGTGCCCTGGGAGCCCTCACAAGCCCTGTGGCTG...TTTTAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp GGGACGACAATGGACCTATGGCATTCTGAGCTCCCCTTTGTAAACAGACAGCAATGCTGTGCAAGCTGCTaGTGGAGGCGCCTTTGCTCT +
Preference number: 4 (lower is better)
Translates to: GTTMDLWHSELPFVNRQQCCASC*WRRLCS
Trigger: AGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCA...TTGCTGTCTGTTTACAAAGGGGAGCTCAGAATGCCATAGGTCCATTGTCGTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp ATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCATCTGCTGTGCAAGCTaGTGCTGGAGGCGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: ILCPWTHIAIVTSDRAECICCAS*CWRRLC
Trigger: GCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGAT...GCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGGCAGTGTTGAGCTGTTaGATCTGCTGTGCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: PLPSLFRTGWLVGLTLRKAVLSC*ICCASC
Trigger: GCAGCTTGCACAGCAGATGCAACAGCTCAACACTGC...CTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp GAAAGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGGCAGCACTCTGCTGTTaGAGCAAGCTCTGGCTGTAC +
Preference number: 4 (lower is better)
Translates to: ERRIVLEASVRGRLWMNQAALCC*SKLWLY
Trigger: GTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGC...CTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp GCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCTAAACTGCCTGCAGCACTCTaGTGTTGCAGCAAGCTCTGG +
Preference number: 4 (lower is better)
Translates to: AFPVQNRLACGTYPKKAKLPAAL*CCSKLW
Trigger: CCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAG...TTTAGCTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTGTAAATAAAGAGGTTTaGCCCCTCTGGACCTTCCTT +
Preference number: 4 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTVNKEV*PLWTFL
Trigger: AAGGAAGGTCCAGAGGGGGCAAACCTCTTTATTTAC...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
CDS-3UTR CCA 90 bp TGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATCCTGTGCAAGCTGCTGCTaGAGGCGCCTTTGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: CPWTHIAIVTSDRAECQSCASCC*RRLCSL
Trigger: CAAAGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACA...GGATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTGGTTGCTGGAGGAGGTaGCCTGCTGCAGAAGCGCCA +
Preference number: 4 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSGCWRR*PAAEAP
Trigger: TGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAACC...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp CCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAACAGAGGGTTTGCATTaGTGCTGGTGGCTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: PPLPSLFRTGWLVGLTLRTEGLH*CWWLRF
Trigger: AAACCTCAGCCACCAGCACCAATGCAAACCCTCTGT...TCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp TTAAAAATGCAGTTTCCCTGTGTTTTGTCTTCCGGAAACAGGCCCTGCGCACCCCACCAGCGGTGGAATTaGGGGTTGAAGCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: LKMQFPCVLSSGNRPCAPHQRWN*GLKQPQ
Trigger: CTGTGGCTGCTTCAACCCCCAATTCCACCGCTGGTG...GGGTGCGCAGGGCCTGTTTCCGGAAGACAAAACACAGGGAAACTGCATTTTTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
CDS-3UTR CCA 90 bp ATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCACCAGCGGTGGAATTaGGGGTTGAAGCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: ILCPWTHIAIVTSDRAECHQRWN*GLKQPQ
Trigger: CTGTGGCTGCTTCAACCCCCAATTCCACCGCTGGTG...GCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp TGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATCACCAGCGGTGGAATTaGGGGTTGAAGCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: CVPGHILLLSPVTGQNANHQRWN*GLKQPQ
Trigger: CTGTGGCTGCTTCAACCCCCAATTCCACCGCTGGTG...ATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp AGGGAGGGTGTGAAGGAAAAGGGAGCTGAGACCAGAAGCTTGCAGGGTGTGTTTCATTCGTCAAGCCTGTaGCGCCAAGTCCTCCATTCA +
Preference number: 4 (lower is better)
Translates to: REGVKEKGAETRSLQGVFHSSSL*RQVLHS
Trigger: TGAATGGAGGACTTGGCGCCACAGGCTTGACGAATG...AAACACACCCTGCAAGCTTCTGGTCTCAGCTCCCTTTTCCTTCACACCCTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTGGGTCAGGGCGTCCATaGTGCCAGCCGTACCATTCG +
Preference number: 4 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSGSGRP*CQPYHS
Trigger: CGAATGGTACGGCTGGCACCATGGACGCCCTGACCC...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp AAGATGTCTGGGGAGAAAACAAGGGAGAGTCAGAAGTTACACAGAGTCTACGCAGGGTCAGGGCGTCCATaGTGCCAGCCGTACCATTCG +
Preference number: 4 (lower is better)
Translates to: KMSGEKTRESQKLHRVYAGSGRP*CQPYHS
Trigger: CGAATGGTACGGCTGGCACCATGGACGCCCTGACCC...TGCGTAGACTCTGTGTAACTTCTGACTCTCCCTTGTTTTCTCCCCAGACATCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
CDS-3UTR CCA 90 bp GATGAAACTGTTTTTGAGACGCCACAGGGACATGCTAGGCAAACGATGACTAACGGGTCAGGGCGTCCATaGTGCCAGCCGTACCATTCG +
Preference number: 4 (lower is better)
Translates to: DETVFETPQGHARQTMTNGSGRP*CQPYHS
Trigger: CGAATGGTACGGCTGGCACCATGGACGCCCTGACCC...GTTAGTCATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp TGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATTCTGGACCTTCCTTCTaGCTGCCTGCAGCACTCTGC +
Preference number: 4 (lower is better)
Translates to: CVPGHILLLSPVTGQNANSGPSF*LPAALC
Trigger: GCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTCCAGA...ATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182851.8
CDS-3UTR CCA 90 bp GTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTGCCGAGGTTTGCCCCCTCTaGACCTTCCTTCTGGCTGCC +
Preference number: 4 (lower is better)
Translates to: VKITVSLGKSWHRGPSSAEVCPL*TFLLAA
Trigger: GGCAGCCAGAAGGAAGGTCCAGAGGGGGCAAACCTC...GGCAGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
CDS-3UTR CCA 90 bp ACCAGAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTACAAAACCTTCCTTCTaGCTGCCTGCAGCACTCTGC +
Preference number: 4 (lower is better)
Translates to: TRSLQGVFSQRLGVCLDCTKPSF*LPAALC
Trigger: GCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTTTTGT...ACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170438.8
ENSMUST00000183209.8
3UTR CAA 72 bp TTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTaGGACTGTAGGCATGACATTGGGGTCTGTCAGAAC +
Preference number: 4 (lower is better)
Translates to: LQGVFSQRLGVC*DCRHDIGVCQN
Trigger: GTTCTGACAGACCCCAATGTCATGCCTACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp CAGGGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGGGTCCCGGAGGACGTTaGTCTGGTAGACAGCTCCAT +
Preference number: 4 (lower is better)
Translates to: QGHARQTMTNGHEDVLRKGPGGR*SGRQLH
Trigger: ATGGAGCTGTCTACCAGATCAACGTCCTCCGGGACC...CTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp GAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTAGTCCTCCCAAGTGGCAGTGTTaGGCTGTTGCATCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: EARLRNMALSRATAGTSPPKWQC*AVASAV
Trigger: CACAGCAGATGCAACAGCTCAACACTGCCACTTGGG...AGGACTAGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp GCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCTAAACAGAGCCGCCATACCTaGGAGCATTTGAGCAACTGC +
Preference number: 4 (lower is better)
Translates to: AFPVQNRLACGTYPKKAKQSRHT*EHLSNC
Trigger: GCAGTTGCTCAAATGCTCTCAGGTATGGCGGCTCTG...TTTAGCTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142941.8
CDS-3UTR GCA 90 bp CATCGTGGTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTGCATTCTGTGCCATTaGCCTTGTAGAAAATGTGAC +
Preference number: 4 (lower is better)
Translates to: HRGPSSAFPVQNRLACGTCILCH*PCRKCD
Trigger: GTCACATTTTCTACAAGGGCAATGGCACAGAATGCA...AGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGACCACGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp TGCCTGCAGCACTCTGCTGTTGCAGCAAGCTCTGGCTGTACAAAGTGGGCAGTGATGCATGGCTTTGATTaGATTCTGTGCCATTGCCCT +
Preference number: 4 (lower is better)
Translates to: CLQHSAVAASSGCTKWAVMHGFD*ILCHCP
Trigger: AGGGCAATGGCACAGAATGCAATCAAAGCCATGCAT...CACTGCCCACTTTGTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp ATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACAAGGTAGCCCAGTGCTGTGCAAGCTGCTaGTGGAGGCGCCTTTGCTCT +
Preference number: 4 (lower is better)
Translates to: IQWHNRRRGLLNKNKVAQCCASC*WRRLCS
Trigger: AGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCA...CTGGGCTACCTTGTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp CAGGGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGTGCTGTGCAAGCTGCTaGTGGAGGCGCCTTTGCTCT +
Preference number: 4 (lower is better)
Translates to: QGHARQTMTNGHEDVLRKCCASC*WRRLCS
Trigger: AGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCA...CTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp ATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACAAGGTAGCCCAGATCTGCTGTGCAAGCTaGTGCTGGAGGCGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: IQWHNRRRGLLNKNKVAQICCAS*CWRRLC
Trigger: GCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGAT...CTGGGCTACCTTGTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp GTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTGCCATCTGCTGTGCAAGCTaGTGCTGGAGGCGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: VKITVSLGKSWHRGPSSAICCAS*CWRRLC
Trigger: GCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGAT...GGCAGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp TGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATCCTTGAGCTGTTGCATCTaGTGTGCAAGCTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: CPWTHIAIVTSDRAECQSLSCCI*CASCCW
Trigger: CCAGCAGCAGCTTGCACAGCAGATGCAACAGCTCAA...GGATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp AGCAAGGGACAGCGGAGAGGGTCCAGTTTGAACAAAGGTGACATATGGGGAAGTGCAGTGTTGAGCTGTTaGATCTGCTGTGCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: SKGQRRGSSLNKGDIWGSAVLSC*ICCASC
Trigger: GCAGCTTGCACAGCAGATGCAACAGCTCAACACTGC...ACTTCCCCATATGTCACCTTTGTTCAAACTGGACCCTCTCCGCTGTCCCTTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
CDS-3UTR GCA 90 bp CGGGACGATGAAACTGTTTTTGAGACGCCACAGGGACATGCTAGGCAAACGATGGCAGTGTTGAGCTGTTaGATCTGCTGTGCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: RDDETVFETPQGHARQTMAVLSC*ICCASC
Trigger: GCAGCTTGCACAGCAGATGCAACAGCTCAACACTGC...CATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGTCCCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp TGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATCCGCAGTGTTGAGCTGTTaGATCTGCTGTGCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: CPWTHIAIVTSDRAECQSAVLSC*ICCASC
Trigger: GCAGCTTGCACAGCAGATGCAACAGCTCAACACTGC...GGATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp ATTATGAAGAGAATACATTGTGAGGGCTGCCGTCACAGCATTGACGTGGAGAGGAGAAGCGCCAGGTACTaGGGGGTAAGTCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: IMKRIHCEGCRHSIDVERRSARY*GVSPPS
Trigger: ACTGGGTGGACTTACCCCGCAGTACCTGGCGCTTCT...CCTCTCCACGTCAATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTCATAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp TGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATCCCTGAATGCCACTGAATaGACCCAGGTTGCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: CPWTHIAIVTSDRAECQSLNATE*TQVAGG
Trigger: TCCTCCAGCAACCTGGGTGCATTCAGTGGCATTCAG...GGATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp GAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGGTTTGAGCAGCAGCTaGAGCAGCAGCCAGTGTTGC +
Preference number: 4 (lower is better)
Translates to: ETNILCPWTHIAIVTSDRGLSSS*SSSQCC
Trigger: GCAACACTGGCTGCTGCTGCAGCTGCTGCTCAAACC...CCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp AGTGAGAGGTTTGGCCTAGGGAAAGAGCCACCTTTCTTCTGTTTGGTAGGCCCAGAGGGTTTGCATTGGTaGTGGTGGCTGAGGTTTGAG +
Preference number: 4 (lower is better)
Translates to: SERFGLGKEPPFFCLVGPEGLHW*WWLRFE
Trigger: CTCAAACCTCAGCCACCAGCACCAATGCAAACCCTC...TGGGCCTACCAAACAGAAGAAAGGTGGCTCTTTCCCTAGGCCAAACCTCTCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp GAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGTCAGGGCGTCCATGGTaGCAGCCGTACCATTCGTCA +
Preference number: 4 (lower is better)
Translates to: ETNILCPWTHIAIVTSDRSGRPW*QPYHSS
Trigger: TGACGAATGGTACGGCTGGCACCATGGACGCCCTGA...CCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp ATTATGAAGAGAATACATTGTGAGGGCTGCCGTCACAGCATTGACGTGGAGAGGCTGCCTGCAGCACTCTaGTGTTGCAGCAAGCTCTGG +
Preference number: 4 (lower is better)
Translates to: IMKRIHCEGCRHSIDVERLPAAL*CCSKLW
Trigger: CCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAG...CCTCTCCACGTCAATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTCATAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp ATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACAAGGTAGCCCAGCTGCCTGCAGCACTCTaGTGTTGCAGCAAGCTCTGG +
Preference number: 4 (lower is better)
Translates to: IQWHNRRRGLLNKNKVAQLPAAL*CCSKLW
Trigger: CCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAG...CTGGGCTACCTTGTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp AGAAAGCCAGCACAGGTGTCACTAGGAATCAGCTTTTGTCAGAGTAGGAGCAGGTTCCTTCTGGCTGCCTaGAGCACTCTGCTGTTGCAG +
Preference number: 4 (lower is better)
Translates to: RKPAQVSLGISFCQSRSRFLLAA*STLLLQ
Trigger: CTGCAACAGCAGAGTGCTGCAGGCAGCCAGAAGGAA...CCTGCTCCTACTCTGACAAAAGCTGATTCCTAGTGACACCTGTGCTGGCTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp AGAAAGCCAGCACAGGTGTCACTAGGAATCAGCTTTTGTCAGAGTAGGAGCAGGGACCTTCCTTCTGGCTaGCTGCAGCACTCTGCTGTT +
Preference number: 4 (lower is better)
Translates to: RKPAQVSLGISFCQSRSRDLPSG*LQHSAV
Trigger: AACAGCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTC...CCTGCTCCTACTCTGACAAAAGCTGATTCCTAGTGACACCTGTGCTGGCTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
CDS-3UTR GCA 90 bp CCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGGTAAATAAAGAGGTTTaGCCCCTCTGGACCTTCCTT +
Preference number: 4 (lower is better)
Translates to: PSSAFPVQNRLACGTYPKVNKEV*PLWTFL
Trigger: AAGGAAGGTCCAGAGGGGGCAAACCTCTTTATTTAC...CTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
CDS-3UTR GCA 90 bp CCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGGGCATGAACATCTaGAGAATGTCCTGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: PPLPSLFRTGWLVGLTLRKGMNI*RMSWSP
Trigger: TGGAGACCAGGACATTCTGCAGATGTTCATGCCCTT...TCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
CDS-3UTR GCA 90 bp GTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTACTGGATTGCAGCTTGTaGAGAGACTGGATTGTCATA +
Preference number: 4 (lower is better)
Translates to: VPPLPSLFRTGWLVGLTLLDCSL*RDWIVI
Trigger: TATGACAATCCAGTCTCTGCACAAGCTGCAATCCAG...TAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp CCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGCTGGATTGCAGCTTGTaGAGAGACTGGATTGTCATA +
Preference number: 4 (lower is better)
Translates to: PSSAFPVQNRLACGTYPKLDCSL*RDWIVI
Trigger: TATGACAATCCAGTCTCTGCACAAGCTGCAATCCAG...CTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp CGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACAGTCTGTCTCAACCTTCCTTCTGGCTaGCTGCAGCACTCTGCTGTT +
Preference number: 4 (lower is better)
Translates to: RTLAAFPFDTERGRTVCLNLPSG*LQHSAV
Trigger: AACAGCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTT...GAGACAGACTGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170438.8
CDS-3UTR CCA 90 bp CGGGACGATGAAACTGTTTTTGAGACGCCACAGGGACATGCTAGGCAAACGATGAAGAGCAGCCCTCCATaGTCTGAGACTGATGCATGG +
Preference number: 4 (lower is better)
Translates to: RDDETVFETPQGHARQTMKSSPP*SETDAW
Trigger: CCATGCATCAGTCTCAGACCATGGAGGGCTGCTCTT...CATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGTCCCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp CACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATAGGTTGCTGGAGGAGGTaGCCTGCTGCAGAAGCGCCA +
Preference number: 4 (lower is better)
Translates to: HQHDAAYSSLSPVHWNSIGCWRR*PAAEAP
Trigger: TGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAACC...TATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp CCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGACAGAGGGTTTGCATTaGTGCTGGTGGCTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: PLPSLFRTGWLVGLTLRKTEGLH*CWWLRF
Trigger: AAACCTCAGCCACCAGCACCAATGCAAACCCTCTGT...CTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp GTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTGCCCACCAGCGGTGGAATTaGGGGTTGAAGCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: VKITVSLGKSWHRGPSSAHQRWN*GLKQPQ
Trigger: CTGTGGCTGCTTCAACCCCCAATTCCACCGCTGGTG...GGCAGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp TCATATGAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTTGGCCGCACCAGCGGTaGAATTGGGGGTTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: SYEARLRNMALSRATAGTWPHQR*NWGLKQ
Trigger: CTGCTTCAACCCCCAATTCCACCGCTGGTGCGGCCA...AGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTCATATGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp GCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCTAAATCTGGCTGTACAAAGTaGGCAGTGCAGCTGCCGCAT +
Preference number: 4 (lower is better)
Translates to: AFPVQNRLACGTYPKKAKSGCTK*AVQLPH
Trigger: ATGCGGCAGCTGCACTGCCCACTTTGTACAGCCAGA...TTTAGCTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp ATTATGAAGAGAATACATTGTGAGGGCTGCCGTCACAGCATTGACGTGGAGAGGTCTGGACCTTCCTTCTaGCTGCCTGCAGCACTCTGC +
Preference number: 4 (lower is better)
Translates to: IMKRIHCEGCRHSIDVERSGPSF*LPAALC
Trigger: GCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTCCAGA...CCTCTCCACGTCAATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTCATAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
CDS-3UTR CCA 90 bp AACCAATGTAGTGGGAGGGTGTTTTGTGGAGTTTTAAGTGCTTCTCCTGGCTTCGAGGTTTGCCCCCTCTaGACCTTCCTTCTGGCTGCC +
Preference number: 4 (lower is better)
Translates to: NQCSGRVFCGVLSASPGFEVCPL*TFLLAA
Trigger: GGCAGCCAGAAGGAAGGTCCAGAGGGGGCAAACCTC...GAAGCCAGGAGAAGCACTTAAAACTCCACAAAACACCCTCCCACTACATTGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000182851.8
CDS-3UTR CCA 90 bp CAGGCCCTGCGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACAGTTTGCTGTCGTTTTTaGAGCGTTTCAGCTGCACCT +
Preference number: 4 (lower is better)
Translates to: QALRTLAAFPFDTERGRTVCCRF*SVSAAP
Trigger: AGGTGCAGCTGAAACGCTCCAAAAACGACAGCAAAC...TGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCGCAGGGCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
CDS-3UTR TCA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTGGTCCCGGAGGACGTTaGTCTGGTAGACAGCTCCAT +
Preference number: 4 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSGPGGR*SGRQLH
Trigger: ATGGAGCTGTCTACCAGATCAACGTCCTCCGGGACC...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp ACTAGATCAAAGGTCAGTAGGAGAACCAAATATGATGTGAGGTCAGAAAGACATCTCTGGGGAGGGTTCTaGCTCCGGTCCCGGAGGACG +
Preference number: 4 (lower is better)
Translates to: TRSKVSRRTKYDVRSERHLWGGF*LRSRRT
Trigger: CGTCCTCCGGGACCGGAGTCAGAACCCTCCCCAGAG...ATGTCTTTCTGACCTCACATCATATTTGGTTCTCCTACTGACCTTTGATCTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp CCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGACGGCATTCTTCTATCTaGCCGAATGGAGAAAACATC +
Preference number: 4 (lower is better)
Translates to: PPLPSLFRTGWLVGLTLRRHSSI*PNGENI
Trigger: GATGTTTTCTCCATTCGGTCAGATAGAAGAATGCCG...TCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR TCA 90 bp GTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTGCCCCCAAGTGGCAGTGTTaGGCTGTTGCATCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: VKITVSLGKSWHRGPSSAPKWQC*AVASAV
Trigger: CACAGCAGATGCAACAGCTCAACACTGCCACTTGGG...GGCAGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR TCA 90 bp ATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACAAGGTAGCCCAGCCCAAGTGGCAGTGTTaGGCTGTTGCATCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: IQWHNRRRGLLNKNKVAQPKWQC*AVASAV
Trigger: CACAGCAGATGCAACAGCTCAACACTGCCACTTGGG...CTGGGCTACCTTGTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp GGGACGACAATGGACCTATGGCATTCTGAGCTCCCCTTTGTAAACAGACAGCAATTTGCTGAATGCCACTaGATGCACCCAGGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: GTTMDLWHSELPFVNRQQFAECH*MHPGCW
Trigger: CCAGCAACCTGGGTGCATTCAGTGGCATTCAGCAAA...TTGCTGTCTGTTTACAAAGGGGAGCTCAGAATGCCATAGGTCCATTGTCGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR TCA 90 bp AGAAAGCCAGCACAGGTGTCACTAGGAATCAGCTTTTGTCAGAGTAGGAGCAGGTTTGCTGAATGCCACTaGATGCACCCAGGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: RKPAQVSLGISFCQSRSRFAECH*MHPGCW
Trigger: CCAGCAACCTGGGTGCATTCAGTGGCATTCAGCAAA...CCTGCTCCTACTCTGACAAAAGCTGATTCCTAGTGACACCTGTGCTGGCTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR TCA 90 bp TTAAAAATGCAGTTTCCCTGTGTTTTGTCTTCCGGAAACAGGCCCTGCGCACCCATGCCAGCCATTTGCTaGATGCCACTGAATGCACCC +
Preference number: 4 (lower is better)
Translates to: LKMQFPCVLSSGNRPCAPMPAIC*MPLNAP
Trigger: GGGTGCATTCAGTGGCATTCAGCAAATGGCTGGCAT...GGGTGCGCAGGGCCTGTTTCCGGAAGACAAAACACAGGGAAACTGCATTTTTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
CDS-3UTR TCA 90 bp GAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGATACTGCTGAATTCCTaGGTAGGCCTGGGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: ETNILCPWTHIAIVTSDRILLNS*VGLGQG
Trigger: GCCCTGACCCAGGCCTACTCAGGAATTCAGCAGTAT...CCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp ATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACAAGGTAGCCCAGATACTGCTGAATTCCTaGGTAGGCCTGGGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: IQWHNRRRGLLNKNKVAQILLNS*VGLGQG
Trigger: GCCCTGACCCAGGCCTACTCAGGAATTCAGCAGTAT...CTGGGCTACCTTGTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp CAGGGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGATACTGCTGAATTCCTaGGTAGGCCTGGGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: QGHARQTMTNGHEDVLRKILLNS*VGLGQG
Trigger: GCCCTGACCCAGGCCTACTCAGGAATTCAGCAGTAT...CTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp GATCAGGGGTTGGGTACAGTGAGAGCACATCTCCTTCCTATCCTGTGTCTACTGTCTGGCTGGTCTGAATaGTCCAAAGCTCCGTTCATC +
Preference number: 4 (lower is better)
Translates to: DQGLGTVRAHLLPILCLLSGWSE*SKAPFI
Trigger: GATGAACGGAGCTTTGGATCATTCAGACCAGCCAGA...CAGTAGACACAGGATAGGAAGGAGATGTGCTCTCACTGTACCCAACCCCTGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR TCA 90 bp CGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACAGTCTGTCTCTCTGGCTGGTCTGAATaGTCCAAAGCTCCGTTCATC +
Preference number: 4 (lower is better)
Translates to: RTLAAFPFDTERGRTVCLSGWSE*SKAPFI
Trigger: GATGAACGGAGCTTTGGATCATTCAGACCAGCCAGA...GAGACAGACTGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp CCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGTGCATTCTGTGCCATTaGCCTTGTAGAAAATGTGAC +
Preference number: 4 (lower is better)
Translates to: PSSAFPVQNRLACGTYPKCILCH*PCRKCD
Trigger: GTCACATTTTCTACAAGGGCAATGGCACAGAATGCA...CTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp GAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTAGGCATGCATGGCTTTGATTaGATTCTGTGCCATTGCCCT +
Preference number: 4 (lower is better)
Translates to: EACRVCFPRGWVCVWTVGMHGFD*ILCHCP
Trigger: AGGGCAATGGCACAGAATGCAATCAAAGCCATGCAT...GCCTACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAATGCATGGCTTTGATTaGATTCTGTGCCATTGCCCT +
Preference number: 4 (lower is better)
Translates to: PPLPSLFRTGWLVGLTLRMHGFD*ILCHCP
Trigger: AGGGCAATGGCACAGAATGCAATCAAAGCCATGCAT...TCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp GGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTATGCTGTGCAAGCTGCTaGTGGAGGCGCCTTTGCTCT +
Preference number: 4 (lower is better)
Translates to: GHARQTMTNGHEDVLRKLCCASC*WRRLCS
Trigger: AGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCA...TAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp GGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAATCTGCTGTGCAAGCTaGTGCTGGAGGCGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: GHARQTMTNGHEDVLRKLICCAS*CWRRLC
Trigger: GCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGAT...TAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp GATGAAACTGTTTTTGAGACGCCACAGGGACATGCTAGGCAAACGATGACTAACATCTGCTGTGCAAGCTaGTGCTGGAGGCGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: DETVFETPQGHARQTMTNICCAS*CWRRLC
Trigger: GCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGAT...GTTAGTCATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp TCTGGGGAGAAAACAAGGGAGAGTCAGAAGTTACACAGAGTCTACGCAGCAGCATTGAGCTGTTGCATCTaGTGTGCAAGCTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: SGEKTRESQKLHRVYAAALSCCI*CASCCW
Trigger: CCAGCAGCAGCTTGCACAGCAGATGCAACAGCTCAA...TGCTGCTGCGTAGACTCTGTGTAACTTCTGACTCTCCCTTGTTTTCTCCCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
CDS-3UTR GCA 90 bp GGGACGACAATGGACCTATGGCATTCTGAGCTCCCCTTTGTAAACAGACAGCAAGCAGTGTTGAGCTGTTaGATCTGCTGTGCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: GTTMDLWHSELPFVNRQQAVLSC*ICCASC
Trigger: GCAGCTTGCACAGCAGATGCAACAGCTCAACACTGC...TTGCTGTCTGTTTACAAAGGGGAGCTCAGAATGCCATAGGTCCATTGTCGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp CATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAAAACTGGAGGAGGTGGCCTaGTGCAGAAGCGCCAGGTAC +
Preference number: 4 (lower is better)
Translates to: HARQTMTNGHEDVLRKLKLEEVA*CRSARY
Trigger: GTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAG...TTTTAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp ATTGTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTCTGGAGGAGGTGGCCTaGTGCAGAAGCGCCAGGTAC +
Preference number: 4 (lower is better)
Translates to: IVKITVSLGKSWHRGPSSLEEVA*CRSARY
Trigger: GTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAG...AGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTACAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp ATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCTGAATGCCACTGAATaGACCCAGGTTGCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: ILCPWTHIAIVTSDRAECLNATE*TQVAGG
Trigger: TCCTCCAGCAACCTGGGTGCATTCAGTGGCATTCAG...GCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp GAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTAGTCCTCTGAATGCCACTGAATaGACCCAGGTTGCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: EARLRNMALSRATAGTSPLNATE*TQVAGG
Trigger: TCCTCCAGCAACCTGGGTGCATTCAGTGGCATTCAG...AGGACTAGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp GCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCTAAACTGAATGCCACTGAATaGACCCAGGTTGCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: AFPVQNRLACGTYPKKAKLNATE*TQVAGG
Trigger: TCCTCCAGCAACCTGGGTGCATTCAGTGGCATTCAG...TTTAGCTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp GGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAGGTTTGAGCAGCAGCTaGAGCAGCAGCCAGTGTTGC +
Preference number: 4 (lower is better)
Translates to: GHARQTMTNGHEDVLRKLGLSSS*SSSQCC
Trigger: GCAACACTGGCTGCTGCTGCAGCTGCTGCTCAAACC...TAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp AGAAAGCCAGCACAGGTGTCACTAGGAATCAGCTTTTGTCAGAGTAGGAGCAGGGAGGGTTTGCATTGGTaGTGGTGGCTGAGGTTTGAG +
Preference number: 4 (lower is better)
Translates to: RKPAQVSLGISFCQSRSREGLHW*WWLRFE
Trigger: CTCAAACCTCAGCCACCAGCACCAATGCAAACCCTC...CCTGCTCCTACTCTGACAAAAGCTGATTCCTAGTGACACCTGTGCTGGCTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp GGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTATCAGGGCGTCCATGGTaGCAGCCGTACCATTCGTCA +
Preference number: 4 (lower is better)
Translates to: GHARQTMTNGHEDVLRKLSGRPW*QPYHSS
Trigger: TGACGAATGGTACGGCTGGCACCATGGACGCCCTGA...TAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp AACCAATGTAGTGGGAGGGTGTTTTGTGGAGTTTTAAGTGCTTCTCCTGGCTTCCTGCCTGCAGCACTCTaGTGTTGCAGCAAGCTCTGG +
Preference number: 4 (lower is better)
Translates to: NQCSGRVFCGVLSASPGFLPAAL*CCSKLW
Trigger: CCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAG...GAAGCCAGGAGAAGCACTTAAAACTCCACAAAACACCCTCCCACTACATTGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp TCATATGAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTCTGCCTGCAGCACTCTaGTGTTGCAGCAAGCTCTGG +
Preference number: 4 (lower is better)
Translates to: SYEARLRNMALSRATAGTLPAAL*CCSKLW
Trigger: CCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAG...AGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTCATATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTCTGCCTGCAGCACTCTaGTGTTGCAGCAAGCTCTGG +
Preference number: 4 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSLPAAL*CCSKLW
Trigger: CCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAG...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp ATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACAAGGTAGCCCAGTTCCTTCTGGCTGCCTaGAGCACTCTGCTGTTGCAG +
Preference number: 4 (lower is better)
Translates to: IQWHNRRRGLLNKNKVAQFLLAA*STLLLQ
Trigger: CTGCAACAGCAGAGTGCTGCAGGCAGCCAGAAGGAA...CTGGGCTACCTTGTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp CAGGGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGTTCCTTCTGGCTGCCTaGAGCACTCTGCTGTTGCAG +
Preference number: 4 (lower is better)
Translates to: QGHARQTMTNGHEDVLRKFLLAA*STLLLQ
Trigger: CTGCAACAGCAGAGTGCTGCAGGCAGCCAGAAGGAA...CTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp GAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGTTCCTTCTGGCTGCCTaGAGCACTCTGCTGTTGCAG +
Preference number: 4 (lower is better)
Translates to: ETNILCPWTHIAIVTSDRFLLAA*STLLLQ
Trigger: CTGCAACAGCAGAGTGCTGCAGGCAGCCAGAAGGAA...CCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp GTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTGCCTTCCTTCTGGCTGCCTaGAGCACTCTGCTGTTGCAG +
Preference number: 4 (lower is better)
Translates to: VKITVSLGKSWHRGPSSAFLLAA*STLLLQ
Trigger: CTGCAACAGCAGAGTGCTGCAGGCAGCCAGAAGGAA...GGCAGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp ATTATGAAGAGAATACATTGTGAGGGCTGCCGTCACAGCATTGACGTGGAGAGGGACCTTCCTTCTGGCTaGCTGCAGCACTCTGCTGTT +
Preference number: 4 (lower is better)
Translates to: IMKRIHCEGCRHSIDVERDLPSG*LQHSAV
Trigger: AACAGCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTC...CCTCTCCACGTCAATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTCATAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
CDS-3UTR GCA 90 bp ATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACAAGGTAGCCCAGGACCTTCCTTCTGGCTaGCTGCAGCACTCTGCTGTT +
Preference number: 4 (lower is better)
Translates to: IQWHNRRRGLLNKNKVAQDLPSG*LQHSAV
Trigger: AACAGCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTC...CTGGGCTACCTTGTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
CDS-3UTR GCA 90 bp GAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTAGGCCTGGATTGCAGCTTGTaGAGAGACTGGATTGTCATA +
Preference number: 4 (lower is better)
Translates to: EACRVCFPRGWVCVWTVGLDCSL*RDWIVI
Trigger: TATGACAATCCAGTCTCTGCACAAGCTGCAATCCAG...GCCTACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp GTCCCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTATCATCTTGTTGGCTGTaGCGTTACTTAAAAGCAGCT +
Preference number: 4 (lower is better)
Translates to: VPPLPSLFRTGWLVGLTLSSCWL*RYLKAA
Trigger: AGCTGCTTTTAAGTAACGGCACAGCCAACAAGATGA...TAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp ATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCAAGAGCAGCCCTCCATaGTCTGAGACTGATGCATGG +
Preference number: 4 (lower is better)
Translates to: ILCPWTHIAIVTSDRAECKSSPP*SETDAW
Trigger: CCATGCATCAGTCTCAGACCATGGAGGGCTGCTCTT...GCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp GCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCTAAAAAGAGCAGCCCTCCATaGTCTGAGACTGATGCATGG +
Preference number: 4 (lower is better)
Translates to: AFPVQNRLACGTYPKKAKKSSPP*SETDAW
Trigger: CCATGCATCAGTCTCAGACCATGGAGGGCTGCTCTT...TTTAGCTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCGGTTGCTGGAGGAGGTaGCCTGCTGCAGAAGCGCCA +
Preference number: 4 (lower is better)
Translates to: SLLETNILCPWTHIAIVTGCWRR*PAAEAP
Trigger: TGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAACC...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp CATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAAAAGGTTGCTGGAGGAGGTaGCCTGCTGCAGAAGCGCCA +
Preference number: 4 (lower is better)
Translates to: HARQTMTNGHEDVLRKLKGCWRR*PAAEAP
Trigger: TGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAACC...TTTTAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp GATCAGGGGTTGGGTACAGTGAGAGCACATCTCCTTCCTATCCTGTGTCTACTGACAGAGGGTTTGCATTaGTGCTGGTGGCTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: DQGLGTVRAHLLPILCLLTEGLH*CWWLRF
Trigger: AAACCTCAGCCACCAGCACCAATGCAAACCCTCTGT...CAGTAGACACAGGATAGGAAGGAGATGTGCTCTCACTGTACCCAACCCCTGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR CCA 90 bp AACCAATGTAGTGGGAGGGTGTTTTGTGGAGTTTTAAGTGCTTCTCCTGGCTTCCACCAGCGGTGGAATTaGGGGTTGAAGCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: NQCSGRVFCGVLSASPGFHQRWN*GLKQPQ
Trigger: CTGTGGCTGCTTCAACCCCCAATTCCACCGCTGGTG...GAAGCCAGGAGAAGCACTTAAAACTCCACAAAACACCCTCCCACTACATTGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp GCAACGTCACTTTCAAGGGTGCGGGAGAAAACTAATGCAAATCTTGGGTCTTCACACCAGCGGTGGAATTaGGGGTTGAAGCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: ATSLSRVREKTNANLGSSHQRWN*GLKQPQ
Trigger: CTGTGGCTGCTTCAACCCCCAATTCCACCGCTGGTG...TGAAGACCCAAGATTTGCATTAGTTTTCTCCCGCACCCTTGAAAGTGACGTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
CDS-3UTR CCA 90 bp CAGAAAGACATCAGAAACAATGACGGGACGATGAAACTGTTTTTGAGACGCCACTGGCCGCACCAGCGGTaGAATTGGGGGTTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: QKDIRNNDGTMKLFLRRHWPHQR*NWGLKQ
Trigger: CTGCTTCAACCCCCAATTCCACCGCTGGTGCGGCCA...GTGGCGTCTCAAAAACAGTTTCATCGTCCCGTCATTGTTTCTGATGTCTTTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp TTCTGGCTGCCTGCAGCACTCTGCTGTTGCAGCAAGCTCTGGCTGTACAAAGTGTATTCAATCCGACAGTaGCTCCAGCCAATCCTTGTA +
Preference number: 4 (lower is better)
Translates to: FWLPAALCCCSKLWLYKVYSIRQ*LQPILV
Trigger: TACAAGGATTGGCTGGAGCCACTGTCGGATTGAATA...CACTTTGTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAGCCAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp CATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAAAAGGGTCAGGGCGTCCATaGTGCCAGCCGTACCATTCG +
Preference number: 4 (lower is better)
Translates to: HARQTMTNGHEDVLRKLKGSGRP*CQPYHS
Trigger: CGAATGGTACGGCTGGCACCATGGACGCCCTGACCC...TTTTAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp TTGTACACGAGGGCATACCATGAAACCCTTATCAAAAAGCAGACACGGTCTTTAGGGTCAGGGCGTCCATaGTGCCAGCCGTACCATTCG +
Preference number: 4 (lower is better)
Translates to: LYTRAYHETLIKKQTRSLGSGRP*CQPYHS
Trigger: CGAATGGTACGGCTGGCACCATGGACGCCCTGACCC...TAAAGACCGTGTCTGCTTTTTGATAAGGGTTTCATGGTATGCCCTCGTGTACAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp ATTGTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTGGGTCAGGGCGTCCATaGTGCCAGCCGTACCATTCG +
Preference number: 4 (lower is better)
Translates to: IVKITVSLGKSWHRGPSSGSGRP*CQPYHS
Trigger: CGAATGGTACGGCTGGCACCATGGACGCCCTGACCC...AGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTACAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp CAGGGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGTCTGGCTGTACAAAGTaGGCAGTGCAGCTGCCGCAT +
Preference number: 4 (lower is better)
Translates to: QGHARQTMTNGHEDVLRKSGCTK*AVQLPH
Trigger: ATGCGGCAGCTGCACTGCCCACTTTGTACAGCCAGA...CTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp ATTATGAAGAGAATACATTGTGAGGGCTGCCGTCACAGCATTGACGTGGAGAGGTCTGGCTGTACAAAGTaGGCAGTGCAGCTGCCGCAT +
Preference number: 4 (lower is better)
Translates to: IMKRIHCEGCRHSIDVERSGCTK*AVQLPH
Trigger: ATGCGGCAGCTGCACTGCCCACTTTGTACAGCCAGA...CCTCTCCACGTCAATGCTGTGACGGCAGCCCTCACAATGTATTCTCTTCATAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp GGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTATCTGGACCTTCCTTCTaGCTGCCTGCAGCACTCTGC +
Preference number: 4 (lower is better)
Translates to: GHARQTMTNGHEDVLRKLSGPSF*LPAALC
Trigger: GCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTCCAGA...TAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
CDS-3UTR CCA 90 bp ACCAGTGACCGGGCAGAATGCCAATCCCTGTGTAATACTTTCAAGTCTGTTTTAGAGGTTTGCCCCCTCTaGACCTTCCTTCTGGCTGCC +
Preference number: 4 (lower is better)
Translates to: TSDRAECQSLCNTFKSVLEVCPL*TFLLAA
Trigger: GGCAGCCAGAAGGAAGGTCCAGAGGGGGCAAACCTC...TAAAACAGACTTGAAAGTATTACACAGGGATTGGCATTCTGCCCGGTCACTGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182851.8
CDS-3UTR CCA 90 bp CAGAAAGACATCAGAAACAATGACGGGACGATGAAACTGTTTTTGAGACGCCACGAGGTTTGCCCCCTCTaGACCTTCCTTCTGGCTGCC +
Preference number: 4 (lower is better)
Translates to: QKDIRNNDGTMKLFLRRHEVCPL*TFLLAA
Trigger: GGCAGCCAGAAGGAAGGTCCAGAGGGGGCAAACCTC...GTGGCGTCTCAAAAACAGTTTCATCGTCCCGTCATTGTTTCTGATGTCTTTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182851.8
CDS-3UTR CCA 90 bp CCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGGTTTGCTGTCGTTTTTaGAGCGTTTCAGCTGCACCT +
Preference number: 4 (lower is better)
Translates to: PLPSLFRTGWLVGLTLRKVCCRF*SVSAAP
Trigger: AGGTGCAGCTGAAACGCTCCAAAAACGACAGCAAAC...CTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp CAGGGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGTGGGTCTGGCTGGTCTaGATGATCCAAAGCTCCGTT +
Preference number: 4 (lower is better)
Translates to: QGHARQTMTNGHEDVLRKWVWLV*MIQSSV
Trigger: AACGGAGCTTTGGATCATTCAGACCAGCCAGACCCA...CTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp CCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGCGGCATTCTTCTATCTaGCCGAATGGAGAAAACATC +
Preference number: 4 (lower is better)
Translates to: PLPSLFRTGWLVGLTLRKRHSSI*PNGENI
Trigger: GATGTTTTCTCCATTCGGTCAGATAGAAGAATGCCG...CTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR TCA 90 bp AGGGAGGGTGTGAAGGAAAAGGGAGCTGAGACCAGAAGCTTGCAGGGTGTGTTTCGGCATTCTTCTATCTaGCCGAATGGAGAAAACATC +
Preference number: 4 (lower is better)
Translates to: REGVKEKGAETRSLQGVFRHSSI*PNGENI
Trigger: GATGTTTTCTCCATTCGGTCAGATAGAAGAATGCCG...AAACACACCCTGCAAGCTTCTGGTCTCAGCTCCCTTTTCCTTCACACCCTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp GGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTACCCAAGTGGCAGTGTTaGGCTGTTGCATCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: GHARQTMTNGHEDVLRKLPKWQC*AVASAV
Trigger: CACAGCAGATGCAACAGCTCAACACTGCCACTTGGG...TAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp GAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGTTTGCTGAATGCCACTaGATGCACCCAGGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: ETNILCPWTHIAIVTSDRFAECH*MHPGCW
Trigger: CCAGCAACCTGGGTGCATTCAGTGGCATTCAGCAAA...CCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp GTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTGCCATGCCAGCCATTTGCTaGATGCCACTGAATGCACCC +
Preference number: 4 (lower is better)
Translates to: VKITVSLGKSWHRGPSSAMPAIC*MPLNAP
Trigger: GGGTGCATTCAGTGGCATTCAGCAAATGGCTGGCAT...GGCAGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR TCA 90 bp ATGGTCTATGAAATACAACTGGTATTCTCTTGTGTTTCTACACGTGTACCTACACAGCCACAGGGCTTGTaGGGGCTCCCAGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: MVYEIQLVFSCVSTRVPTQPQGL*GLPGHC
Trigger: GCAGTGCCCTGGGAGCCCTCACAAGCCCTGTGGCTG...TGTAGGTACACGTGTAGAAACACAAGAGAATACCAGTTGTATTTCATAGACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
CDS-3UTR TCA 90 bp GCAACGTCACTTTCAAGGGTGCGGGAGAAAACTAATGCAAATCTTGGGTCTTCAATACTGCTGAATTCCTaGGTAGGCCTGGGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: ATSLSRVREKTNANLGSSILLNS*VGLGQG
Trigger: GCCCTGACCCAGGCCTACTCAGGAATTCAGCAGTAT...TGAAGACCCAAGATTTGCATTAGTTTTCTCCCGCACCCTTGAAAGTGACGTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
CDS-3UTR TCA 90 bp AACCAATGTAGTGGGAGGGTGTTTTGTGGAGTTTTAAGTGCTTCTCCTGGCTTCATACTGCTGAATTCCTaGGTAGGCCTGGGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: NQCSGRVFCGVLSASPGFILLNS*VGLGQG
Trigger: GCCCTGACCCAGGCCTACTCAGGAATTCAGCAGTAT...GAAGCCAGGAGAAGCACTTAAAACTCCACAAAACACCCTCCCACTACATTGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp GAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTAGTCCTTCTGGCTGGTCTGAATaGTCCAAAGCTCCGTTCATC +
Preference number: 4 (lower is better)
Translates to: EARLRNMALSRATAGTSPSGWSE*SKAPFI
Trigger: GATGAACGGAGCTTTGGATCATTCAGACCAGCCAGA...AGGACTAGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp ACCAGTGACCGGGCAGAATGCCAATCCCTGTGTAATACTTTCAAGTCTGTTTTATGCTGTGCAAGCTGCTaGTGGAGGCGCCTTTGCTCT +
Preference number: 4 (lower is better)
Translates to: TSDRAECQSLCNTFKSVLCCASC*WRRLCS
Trigger: AGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCA...TAAAACAGACTTGAAAGTATTACACAGGGATTGGCATTCTGCCCGGTCACTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATAATCTGCTGTGCAAGCTaGTGCTGGAGGCGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: HQHDAAYSSLSPVHWNSIICCAS*CWRRLC
Trigger: GCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGAT...TATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp GAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGTTGAGCTGTTGCATCTaGTGTGCAAGCTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: ETNILCPWTHIAIVTSDRLSCCI*CASCCW
Trigger: CCAGCAGCAGCTTGCACAGCAGATGCAACAGCTCAA...CCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp ACCAGTGACCGGGCAGAATGCCAATCCCTGTGTAATACTTTCAAGTCTGTTTTAAGAAGCGCCAGGTACTaGGGGGTAAGTCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: TSDRAECQSLCNTFKSVLRSARY*GVSPPS
Trigger: ACTGGGTGGACTTACCCCGCAGTACCTGGCGCTTCT...TAAAACAGACTTGAAAGTATTACACAGGGATTGGCATTCTGCCCGGTCACTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CAGAAAGACATCAGAAACAATGACGGGACGATGAAACTGTTTTTGAGACGCCACAGAAGCGCCAGGTACTaGGGGGTAAGTCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: QKDIRNNDGTMKLFLRRHRSARY*GVSPPS
Trigger: ACTGGGTGGACTTACCCCGCAGTACCTGGCGCTTCT...GTGGCGTCTCAAAAACAGTTTCATCGTCCCGTCATTGTTTCTGATGTCTTTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp GACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATAAAATATAGGCTGGAGGAGGTGGCCTaGTGCAGAAGCGCCAGGTAC +
Preference number: 4 (lower is better)
Translates to: DAAYSSLSPVHWNSIKYRLEEVA*CRSARY
Trigger: GTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAG...CCTATATTTTATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp ATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACAAGGTAGCCCAGCTGAATGCCACTGAATaGACCCAGGTTGCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: IQWHNRRRGLLNKNKVAQLNATE*TQVAGG
Trigger: TCCTCCAGCAACCTGGGTGCATTCAGTGGCATTCAG...CTGGGCTACCTTGTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp TCTAACTGTGAGTCAGTTCAGCAAAAGGTGACACAAATAGGTAGCATTTGCCCCGGTTTGAGCAGCAGCTaGAGCAGCAGCCAGTGTTGC +
Preference number: 4 (lower is better)
Translates to: SNCESVQQKVTQIGSICPGLSSS*SSSQCC
Trigger: GCAACACTGGCTGCTGCTGCAGCTGCTGCTCAAACC...GGGGCAAATGCTACCTATTTGTGTCACCTTTTGCTGAACTGACTCACAGTTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp AATAAGAGCAGGGAGCTTCTGGGGTTAGGATCAGTAAGGTTTGCTGTCGTTTTTGGTTTGAGCAGCAGCTaGAGCAGCAGCCAGTGTTGC +
Preference number: 4 (lower is better)
Translates to: NKSRELLGLGSVRFAVVFGLSSS*SSSQCC
Trigger: GCAACACTGGCTGCTGCTGCAGCTGCTGCTCAAACC...AAAAACGACAGCAAACCTTACTGATCCTAACCCCAGAAGCTCCCTGCTCTTATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp GTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTGCCGAGGGTTTGCATTGGTaGTGGTGGCTGAGGTTTGAG +
Preference number: 4 (lower is better)
Translates to: VKITVSLGKSWHRGPSSAEGLHW*WWLRFE
Trigger: CTCAAACCTCAGCCACCAGCACCAATGCAAACCCTC...GGCAGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp CACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATATCAGGGCGTCCATGGTaGCAGCCGTACCATTCGTCA +
Preference number: 4 (lower is better)
Translates to: HQHDAAYSSLSPVHWNSISGRPW*QPYHSS
Trigger: TGACGAATGGTACGGCTGGCACCATGGACGCCCTGA...TATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTGCAGCACTCTGCTGTTaGAGCAAGCTCTGGCTGTAC +
Preference number: 4 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSAALCC*SKLWLY
Trigger: GTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGC...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp GGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAGCAGCACTCTGCTGTTaGAGCAAGCTCTGGCTGTAC +
Preference number: 4 (lower is better)
Translates to: GHARQTMTNGHEDVLRKLAALCC*SKLWLY
Trigger: GTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGC...TAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp ACCAGTGACCGGGCAGAATGCCAATCCCTGTGTAATACTTTCAAGTCTGTTTTACTGCCTGCAGCACTCTaGTGTTGCAGCAAGCTCTGG +
Preference number: 4 (lower is better)
Translates to: TSDRAECQSLCNTFKSVLLPAAL*CCSKLW
Trigger: CCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAG...TAAAACAGACTTGAAAGTATTACACAGGGATTGGCATTCTGCCCGGTCACTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp AACCAATGTAGTGGGAGGGTGTTTTGTGGAGTTTTAAGTGCTTCTCCTGGCTTCTTCCTTCTGGCTGCCTaGAGCACTCTGCTGTTGCAG +
Preference number: 4 (lower is better)
Translates to: NQCSGRVFCGVLSASPGFFLLAA*STLLLQ
Trigger: CTGCAACAGCAGAGTGCTGCAGGCAGCCAGAAGGAA...GAAGCCAGGAGAAGCACTTAAAACTCCACAAAACACCCTCCCACTACATTGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp TCATATGAAGCCAGACTCAGGAATATGGCACTTTCGAGAGCAACAGCAGGAACTTTCCTTCTGGCTGCCTaGAGCACTCTGCTGTTGCAG +
Preference number: 4 (lower is better)
Translates to: SYEARLRNMALSRATAGTFLLAA*STLLLQ
Trigger: CTGCAACAGCAGAGTGCTGCAGGCAGCCAGAAGGAA...AGTTCCTGCTGTTGCTCTCGAAAGTGCCATATTCCTGAGTCTGGCTTCATATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CGGGACGATGAAACTGTTTTTGAGACGCCACAGGGACATGCTAGGCAAACGATGAAGGGCATGAACATCTaGAGAATGTCCTGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: RDDETVFETPQGHARQTMKGMNI*RMSWSP
Trigger: TGGAGACCAGGACATTCTGCAGATGTTCATGCCCTT...CATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGTCCCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182851.8
CDS-3UTR GCA 90 bp CGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACAGTCTGTCTCAAGGGCATGAACATCTaGAGAATGTCCTGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: RTLAAFPFDTERGRTVCLKGMNI*RMSWSP
Trigger: TGGAGACCAGGACATTCTGCAGATGTTCATGCCCTT...GAGACAGACTGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
CDS-3UTR GCA 90 bp CGGGACGATGAAACTGTTTTTGAGACGCCACAGGGACATGCTAGGCAAACGATGTTGGAGCGTTTCAGCTaGACCTTCAAGCGTTTCATG +
Preference number: 4 (lower is better)
Translates to: RDDETVFETPQGHARQTMLERFS*TFKRFM
Trigger: CATGAAACGCTTGAAGGTGCAGCTGAAACGCTCCAA...CATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGTCCCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp GTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTGCCAACCTTCCTTCTGGCTaGCTGCAGCACTCTGCTGTT +
Preference number: 4 (lower is better)
Translates to: VKITVSLGKSWHRGPSSANLPSG*LQHSAV
Trigger: AACAGCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTT...GGCAGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp CAGGGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGAACCTTCCTTCTGGCTaGCTGCAGCACTCTGCTGTT +
Preference number: 4 (lower is better)
Translates to: QGHARQTMTNGHEDVLRKNLPSG*LQHSAV
Trigger: AACAGCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTT...CTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTTGTGCAAGCTGCTGCTaGAGGCGCCTTTGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSCASCC*RRLCSL
Trigger: CAAAGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACA...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp GGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTATGTGCAAGCTGCTGCTaGAGGCGCCTTTGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: GHARQTMTNGHEDVLRKLCASCC*RRLCSL
Trigger: CAAAGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACA...TAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp TGCGGGAGAAAACTAATGCAAATCTTGGGTCTTCAGGGAGTCTATGAGCCATTCTGTGCAAGCTGCTGCTaGAGGCGCCTTTGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: CGRKLMQILGLQGVYEPFCASCC*RRLCSL
Trigger: CAAAGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACA...GAATGGCTCATAGACTCCCTGAAGACCCAAGATTTGCATTAGTTTTCTCCCGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000170438.8
ENSMUST00000182851.8
CDS-3UTR CCA 90 bp ATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACAAGGTAGCCCAGTTGCATTGGTGCTGGTaGCTGAGGTTTGAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: IQWHNRRRGLLNKNKVAQLHWCW*LRFEQQ
Trigger: CTGCTGCTCAAACCTCAGCCACCAGCACCAATGCAA...CTGGGCTACCTTGTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp CAGGGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGTTGCATTGGTGCTGGTaGCTGAGGTTTGAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: QGHARQTMTNGHEDVLRKLHWCW*LRFEQQ
Trigger: CTGCTGCTCAAACCTCAGCCACCAGCACCAATGCAA...CTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp ATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCACAGAGGGTTTGCATTaGTGCTGGTGGCTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: ILCPWTHIAIVTSDRAECTEGLH*CWWLRF
Trigger: AAACCTCAGCCACCAGCACCAATGCAAACCCTCTGT...GCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp ACCAGTGACCGGGCAGAATGCCAATCCCTGTGTAATACTTTCAAGTCTGTTTTACACCAGCGGTGGAATTaGGGGTTGAAGCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: TSDRAECQSLCNTFKSVLHQRWN*GLKQPQ
Trigger: CTGTGGCTGCTTCAACCCCCAATTCCACCGCTGGTG...TAAAACAGACTTGAAAGTATTACACAGGGATTGGCATTCTGCCCGGTCACTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp CATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAAAATGGCCGCACCAGCGGTaGAATTGGGGGTTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: HARQTMTNGHEDVLRKLKWPHQR*NWGLKQ
Trigger: CTGCTTCAACCCCCAATTCCACCGCTGGTGCGGCCA...TTTTAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp GGACCGAGCCTTTGTGTCTTCGGTAGAAAAGCCCAGTTTGTCTTTCAGTGCGCGTATTCAATCCGACAGTaGCTCCAGCCAATCCTTGTA +
Preference number: 4 (lower is better)
Translates to: GPSLCVFGRKAQFVFQCAYSIRQ*LQPILV
Trigger: TACAAGGATTGGCTGGAGCCACTGTCGGATTGAATA...CGCGCACTGAAAGACAAACTGGGCTTTTCTACCGAAGACACAAAGGCTCGGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR CCA 90 bp ACCAGAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTTATTCAATCCGACAGTaGCTCCAGCCAATCCTTGTA +
Preference number: 4 (lower is better)
Translates to: TRSLQGVFSQRLGVCLDCYSIRQ*LQPILV
Trigger: TACAAGGATTGGCTGGAGCCACTGTCGGATTGAATA...ACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTCTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp GAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGCATTCGTCAAGCCTGTaGCGCCAAGTCCTCCATTCA +
Preference number: 4 (lower is better)
Translates to: ETNILCPWTHIAIVTSDRHSSSL*RQVLHS
Trigger: TGAATGGAGGACTTGGCGCCACAGGCTTGACGAATG...CCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp ATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACAAGGTAGCCCAGCATTCGTCAAGCCTGTaGCGCCAAGTCCTCCATTCA +
Preference number: 4 (lower is better)
Translates to: IQWHNRRRGLLNKNKVAQHSSSL*RQVLHS
Trigger: TGAATGGAGGACTTGGCGCCACAGGCTTGACGAATG...CTGGGCTACCTTGTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp GGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTATCTGGCTGTACAAAGTaGGCAGTGCAGCTGCCGCAT +
Preference number: 4 (lower is better)
Translates to: GHARQTMTNGHEDVLRKLSGCTK*AVQLPH
Trigger: ATGCGGCAGCTGCACTGCCCACTTTGTACAGCCAGA...TAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp AACCAATGTAGTGGGAGGGTGTTTTGTGGAGTTTTAAGTGCTTCTCCTGGCTTCTCTGGCTGTACAAAGTaGGCAGTGCAGCTGCCGCAT +
Preference number: 4 (lower is better)
Translates to: NQCSGRVFCGVLSASPGFSGCTK*AVQLPH
Trigger: ATGCGGCAGCTGCACTGCCCACTTTGTACAGCCAGA...GAAGCCAGGAGAAGCACTTAAAACTCCACAAAACACCCTCCCACTACATTGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTTCTGGCTGTACAAAGTaGGCAGTGCAGCTGCCGCAT +
Preference number: 4 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSSGCTK*AVQLPH
Trigger: ATGCGGCAGCTGCACTGCCCACTTTGTACAGCCAGA...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp CACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATATCTGGACCTTCCTTCTaGCTGCCTGCAGCACTCTGC +
Preference number: 4 (lower is better)
Translates to: HQHDAAYSSLSPVHWNSISGPSF*LPAALC
Trigger: GCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTCCAGA...TATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182851.8
CDS-3UTR CCA 90 bp CATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAAAAGAGGTTTGCCCCCTCTaGACCTTCCTTCTGGCTGCC +
Preference number: 4 (lower is better)
Translates to: HARQTMTNGHEDVLRKLKEVCPL*TFLLAA
Trigger: GGCAGCCAGAAGGAAGGTCCAGAGGGGGCAAACCTC...TTTTAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
CDS-3UTR CCA 90 bp CAAACAAAGAGAATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACGAGGTTTGCCCCCTCTaGACCTTCCTTCTGGCTGCC +
Preference number: 4 (lower is better)
Translates to: QTKRIQWHNRRRGLLNKNEVCPL*TFLLAA
Trigger: GGCAGCCAGAAGGAAGGTCCAGAGGGGGCAAACCTC...GTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTATTCTCTTTGTTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
CDS-3UTR CCA 90 bp CAGGCCCTGCGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACACTCCGTTCATCTTGTTaGCTGTGCCGTTACTTAAAA +
Preference number: 4 (lower is better)
Translates to: QALRTLAAFPFDTERGRTLRSSC*LCRYLK
Trigger: TTTTAAGTAACGGCACAGCCAACAAGATGAACGGAG...TGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCGCAGGGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
CDS-3UTR TCA 90 bp AACCAATGTAGTGGGAGGGTGTTTTGTGGAGTTTTAAGTGCTTCTCCTGGCTTCTGGGTCTGGCTGGTCTaGATGATCCAAAGCTCCGTT +
Preference number: 4 (lower is better)
Translates to: NQCSGRVFCGVLSASPGFWVWLV*MIQSSV
Trigger: AACGGAGCTTTGGATCATTCAGACCAGCCAGACCCA...GAAGCCAGGAGAAGCACTTAAAACTCCACAAAACACCCTCCCACTACATTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTTGGGTCTGGCTGGTCTaGATGATCCAAAGCTCCGTT +
Preference number: 4 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSWVWLV*MIQSSV
Trigger: AACGGAGCTTTGGATCATTCAGACCAGCCAGACCCA...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp CATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAAAAGGTCCCGGAGGACGTTaGTCTGGTAGACAGCTCCAT +
Preference number: 4 (lower is better)
Translates to: HARQTMTNGHEDVLRKLKGPGGR*SGRQLH
Trigger: ATGGAGCTGTCTACCAGATCAACGTCCTCCGGGACC...TTTTAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCGGTCCCGGAGGACGTTaGTCTGGTAGACAGCTCCAT +
Preference number: 4 (lower is better)
Translates to: SLLETNILCPWTHIAIVTGPGGR*SGRQLH
Trigger: ATGGAGCTGTCTACCAGATCAACGTCCTCCGGGACC...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp CATAGAGAAATAACAAACAATAACAATTTCAGGCAACAAGACCACGGAATAGCACTCTGGGGAGGGTTCTaGCTCCGGTCCCGGAGGACG +
Preference number: 4 (lower is better)
Translates to: HREITNNNNFRQQDHGIALWGGF*LRSRRT
Trigger: CGTCCTCCGGGACCGGAGTCAGAACCCTCCCCAGAG...TGCTATTCCGTGGTCTTGTTGCCTGAAATTGTTATTGTTTGTTATTTCTCTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp CCCAAATCAGATATTCACTTAGGTGGAATCGACTGTATCTTTTTACACAACATACTCTGGGGAGGGTTCTaGCTCCGGTCCCGGAGGACG +
Preference number: 4 (lower is better)
Translates to: PKSDIHLGGIDCIFLHNILWGGF*LRSRRT
Trigger: CGTCCTCCGGGACCGGAGTCAGAACCCTCCCCAGAG...TATGTTGTGTAAAAAGATACAGTCGATTCCACCTAAGTGAATATCTGATTTGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR TCA 90 bp GAAATCAAACTTGAAATCAGTCATTGTCAGGGGGCCCACAAGAGTAAGCCACAACCCAAGTGGCAGTGTTaGGCTGTTGCATCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: EIKLEISHCQGAHKSKPQPKWQC*AVASAV
Trigger: CACAGCAGATGCAACAGCTCAACACTGCCACTTGGG...TTGTGGCTTACTCTTGTGGGCCCCCTGACAATGACTGATTTCAAGTTTGATTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
CDS-3UTR TCA 90 bp CACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATACCCAAGTGGCAGTGTTaGGCTGTTGCATCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: HQHDAAYSSLSPVHWNSIPKWQC*AVASAV
Trigger: CACAGCAGATGCAACAGCTCAACACTGCCACTTGGG...TATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp AACCAATGTAGTGGGAGGGTGTTTTGTGGAGTTTTAAGTGCTTCTCCTGGCTTCTTTGCTGAATGCCACTaGATGCACCCAGGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: NQCSGRVFCGVLSASPGFFAECH*MHPGCW
Trigger: CCAGCAACCTGGGTGCATTCAGTGGCATTCAGCAAA...GAAGCCAGGAGAAGCACTTAAAACTCCACAAAACACCCTCCCACTACATTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR TCA 90 bp GATGAAACTGTTTTTGAGACGCCACAGGGACATGCTAGGCAAACGATGACTAACATGCCAGCCATTTGCTaGATGCCACTGAATGCACCC +
Preference number: 4 (lower is better)
Translates to: DETVFETPQGHARQTMTNMPAIC*MPLNAP
Trigger: GGGTGCATTCAGTGGCATTCAGCAAATGGCTGGCAT...GTTAGTCATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp GGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAATGCCAGCCATTTGCTaGATGCCACTGAATGCACCC +
Preference number: 4 (lower is better)
Translates to: GHARQTMTNGHEDVLRKLMPAIC*MPLNAP
Trigger: GGGTGCATTCAGTGGCATTCAGCAAATGGCTGGCAT...TAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATGCCAGCCATTTGCTaGATGCCACTGAATGCACCC +
Preference number: 4 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSMPAIC*MPLNAP
Trigger: GGGTGCATTCAGTGGCATTCAGCAAATGGCTGGCAT...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp CATAGCCTGGATTGCAGCTTGTGCAGAGACTGGATTGTCATAGCTAACAAAACCATGCCAGCCATTTGCTaGATGCCACTGAATGCACCC +
Preference number: 4 (lower is better)
Translates to: HSLDCSLCRDWIVIANKTMPAIC*MPLNAP
Trigger: GGGTGCATTCAGTGGCATTCAGCAAATGGCTGGCAT...GGTTTTGTTAGCTATGACAATCCAGTCTCTGCACAAGCTGCAATCCAGGCTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
CDS-3UTR TCA 90 bp TCTAACTGTGAGTCAGTTCAGCAAAAGGTGACACAAATAGGTAGCATTTGCCCCATACTGCTGAATTCCTaGGTAGGCCTGGGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: SNCESVQQKVTQIGSICPILLNS*VGLGQG
Trigger: GCCCTGACCCAGGCCTACTCAGGAATTCAGCAGTAT...GGGGCAAATGCTACCTATTTGTGTCACCTTTTGCTGAACTGACTCACAGTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp ACCAGTGACCGGGCAGAATGCCAATCCCTGTGTAATACTTTCAAGTCTGTTTTAATACTGCTGAATTCCTaGGTAGGCCTGGGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: TSDRAECQSLCNTFKSVLILLNS*VGLGQG
Trigger: GCCCTGACCCAGGCCTACTCAGGAATTCAGCAGTAT...TAAAACAGACTTGAAAGTATTACACAGGGATTGGCATTCTGCCCGGTCACTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp GAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGTCTGGCTGGTCTGAATaGTCCAAAGCTCCGTTCATC +
Preference number: 4 (lower is better)
Translates to: ETNILCPWTHIAIVTSDRSGWSE*SKAPFI
Trigger: GATGAACGGAGCTTTGGATCATTCAGACCAGCCAGA...CCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp GTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTGCCTCTGGCTGGTCTGAATaGTCCAAAGCTCCGTTCATC +
Preference number: 4 (lower is better)
Translates to: VKITVSLGKSWHRGPSSASGWSE*SKAPFI
Trigger: GATGAACGGAGCTTTGGATCATTCAGACCAGCCAGA...GGCAGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp ACCAGAAGCTTGCAGGGTGTGTTTTCCCAGAGGCTGGGTGTGTGTTTGGACTGTTGCATTCTGTGCCATTaGCCTTGTAGAAAATGTGAC +
Preference number: 4 (lower is better)
Translates to: TRSLQGVFSQRLGVCLDCCILCH*PCRKCD
Trigger: GTCACATTTTCTACAAGGGCAATGGCACAGAATGCA...ACAGTCCAAACACACACCCAGCCTCTGGGAAAACACACCCTGCAAGCTTCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp AGTGAGAGGTTTGGCCTAGGGAAAGAGCCACCTTTCTTCTGTTTGGTAGGCCCAATGCATGGCTTTGATTaGATTCTGTGCCATTGCCCT +
Preference number: 4 (lower is better)
Translates to: SERFGLGKEPPFFCLVGPMHGFD*ILCHCP
Trigger: AGGGCAATGGCACAGAATGCAATCAAAGCCATGCAT...TGGGCCTACCAAACAGAAGAAAGGTGGCTCTTTCCCTAGGCCAAACCTCTCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp ACTTATCAGGAACGATGCATGGTCCGCTTGTGTTCACTGCATTGCCTAGCCTGCATGCATGGCTTTGATTaGATTCTGTGCCATTGCCCT +
Preference number: 4 (lower is better)
Translates to: TYQERCMVRLCSLHCLACMHGFD*ILCHCP
Trigger: AGGGCAATGGCACAGAATGCAATCAAAGCCATGCAT...GCAGGCTAGGCAATGCAGTGAACACAAGCGGACCATGCATCGTTCCTGATAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp TTGTACACGAGGGCATACCATGAAACCCTTATCAAAAAGCAGACACGGTCTTTATGCTGTGCAAGCTGCTaGTGGAGGCGCCTTTGCTCT +
Preference number: 4 (lower is better)
Translates to: LYTRAYHETLIKKQTRSLCCASC*WRRLCS
Trigger: AGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCA...TAAAGACCGTGTCTGCTTTTTGATAAGGGTTTCATGGTATGCCCTCGTGTACAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAAAATGCTGTGCAAGCTGCTaGTGGAGGCGCCTTTGCTCT +
Preference number: 4 (lower is better)
Translates to: HARQTMTNGHEDVLRKLKCCASC*WRRLCS
Trigger: AGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCA...TTTTAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp ATTGTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTTGCTGTGCAAGCTGCTaGTGGAGGCGCCTTTGCTCT +
Preference number: 4 (lower is better)
Translates to: IVKITVSLGKSWHRGPSSCCASC*WRRLCS
Trigger: AGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCA...AGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTACAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR GCA 90 bp TTGTACACGAGGGCATACCATGAAACCCTTATCAAAAAGCAGACACGGTCTTTAATCTGCTGTGCAAGCTaGTGCTGGAGGCGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: LYTRAYHETLIKKQTRSLICCAS*CWRRLC
Trigger: GCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGAT...TAAAGACCGTGTCTGCTTTTTGATAAGGGTTTCATGGTATGCCCTCGTGTACAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCATCTGCTGTGCAAGCTaGTGCTGGAGGCGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: SLLETNILCPWTHIAIVTICCAS*CWRRLC
Trigger: GCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGAT...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp GGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTATTGAGCTGTTGCATCTaGTGTGCAAGCTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: GHARQTMTNGHEDVLRKLLSCCI*CASCCW
Trigger: CCAGCAGCAGCTTGCACAGCAGATGCAACAGCTCAA...TAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp AACCAATGTAGTGGGAGGGTGTTTTGTGGAGTTTTAAGTGCTTCTCCTGGCTTCGCAGTGTTGAGCTGTTaGATCTGCTGTGCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: NQCSGRVFCGVLSASPGFAVLSC*ICCASC
Trigger: GCAGCTTGCACAGCAGATGCAACAGCTCAACACTGC...GAAGCCAGGAGAAGCACTTAAAACTCCACAAAACACCCTCCCACTACATTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp GATGAAACTGTTTTTGAGACGCCACAGGGACATGCTAGGCAAACGATGACTAACGCAGTGTTGAGCTGTTaGATCTGCTGTGCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: DETVFETPQGHARQTMTNAVLSC*ICCASC
Trigger: GCAGCTTGCACAGCAGATGCAACAGCTCAACACTGC...GTTAGTCATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAAAAAGAAGCGCCAGGTACTaGGGGGTAAGTCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: HARQTMTNGHEDVLRKLKRSARY*GVSPPS
Trigger: ACTGGGTGGACTTACCCCGCAGTACCTGGCGCTTCT...TTTTAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGAAGCGCCAGGTACTaGGGGGTAAGTCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: SLLETNILCPWTHIAIVTRSARY*GVSPPS
Trigger: ACTGGGTGGACTTACCCCGCAGTACCTGGCGCTTCT...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CAAACAAAGAGAATACAGTGGCACAACCGGAGGAGGGGTTTACTCAATAAAAACAGAAGCGCCAGGTACTaGGGGGTAAGTCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: QTKRIQWHNRRRGLLNKNRSARY*GVSPPS
Trigger: ACTGGGTGGACTTACCCCGCAGTACCTGGCGCTTCT...GTTTTTATTGAGTAAACCCCTCCTCCGGTTGTGCCACTGTATTCTCTTTGTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp AAGGACAGTCTGTCTCTGAGGAAGGCTAACTTTCTAACAATGAAACATGCAAAACTGGAGGAGGTGGCCTaGTGCAGAAGCGCCAGGTAC +
Preference number: 4 (lower is better)
Translates to: KDSLSLRKANFLTMKHAKLEEVA*CRSARY
Trigger: GTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAG...TTTTGCATGTTTCATTGTTAGAAAGTTAGCCTTCCTCAGAGACAGACTGTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp GGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTACTGAATGCCACTGAATaGACCCAGGTTGCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: GHARQTMTNGHEDVLRKLLNATE*TQVAGG
Trigger: TCCTCCAGCAACCTGGGTGCATTCAGTGGCATTCAG...TAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp GATGAAACTGTTTTTGAGACGCCACAGGGACATGCTAGGCAAACGATGACTAACCTGAATGCCACTGAATaGACCCAGGTTGCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: DETVFETPQGHARQTMTNLNATE*TQVAGG
Trigger: TCCTCCAGCAACCTGGGTGCATTCAGTGGCATTCAG...GTTAGTCATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCGGTTTGAGCAGCAGCTaGAGCAGCAGCCAGTGTTGC +
Preference number: 4 (lower is better)
Translates to: SLLETNILCPWTHIAIVTGLSSS*SSSQCC
Trigger: GCAACACTGGCTGCTGCTGCAGCTGCTGCTCAAACC...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp AACCAATGTAGTGGGAGGGTGTTTTGTGGAGTTTTAAGTGCTTCTCCTGGCTTCGAGGGTTTGCATTGGTaGTGGTGGCTGAGGTTTGAG +
Preference number: 4 (lower is better)
Translates to: NQCSGRVFCGVLSASPGFEGLHW*WWLRFE
Trigger: CTCAAACCTCAGCCACCAGCACCAATGCAAACCCTC...GAAGCCAGGAGAAGCACTTAAAACTCCACAAAACACCCTCCCACTACATTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000114924.10
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000182851.8
ENSMUST00000183091.8
CDS-3UTR GCA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTGAGGGTTTGCATTGGTaGTGGTGGCTGAGGTTTGAG +
Preference number: 4 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSEGLHW*WWLRFE
Trigger: CTCAAACCTCAGCCACCAGCACCAATGCAAACCCTC...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCTCAGGGCGTCCATGGTaGCAGCCGTACCATTCGTCA +
Preference number: 4 (lower is better)
Translates to: SLLETNILCPWTHIAIVTSGRPW*QPYHSS
Trigger: TGACGAATGGTACGGCTGGCACCATGGACGCCCTGA...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CAGAAAGACATCAGAAACAATGACGGGACGATGAAACTGTTTTTGAGACGCCACGCAGCACTCTGCTGTTaGAGCAAGCTCTGGCTGTAC +
Preference number: 4 (lower is better)
Translates to: QKDIRNNDGTMKLFLRRHAALCC*SKLWLY
Trigger: GTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGC...GTGGCGTCTCAAAAACAGTTTCATCGTCCCGTCATTGTTTCTGATGTCTTTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATAGCAGCACTCTGCTGTTaGAGCAAGCTCTGGCTGTAC +
Preference number: 4 (lower is better)
Translates to: HQHDAAYSSLSPVHWNSIAALCC*SKLWLY
Trigger: GTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGC...TATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp TCTAACTGTGAGTCAGTTCAGCAAAAGGTGACACAAATAGGTAGCATTTGCCCCGCAGCACTCTGCTGTTaGAGCAAGCTCTGGCTGTAC +
Preference number: 4 (lower is better)
Translates to: SNCESVQQKVTQIGSICPAALCC*SKLWLY
Trigger: GTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGC...GGGGCAAATGCTACCTATTTGTGTCACCTTTTGCTGAACTGACTCACAGTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp TTGTACACGAGGGCATACCATGAAACCCTTATCAAAAAGCAGACACGGTCTTTACTGCCTGCAGCACTCTaGTGTTGCAGCAAGCTCTGG +
Preference number: 4 (lower is better)
Translates to: LYTRAYHETLIKKQTRSLLPAAL*CCSKLW
Trigger: CCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAG...TAAAGACCGTGTCTGCTTTTTGATAAGGGTTTCATGGTATGCCCTCGTGTACAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAAAACTGCCTGCAGCACTCTaGTGTTGCAGCAAGCTCTGG +
Preference number: 4 (lower is better)
Translates to: HARQTMTNGHEDVLRKLKLPAAL*CCSKLW
Trigger: CCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAG...TTTTAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp TCTAACTGTGAGTCAGTTCAGCAAAAGGTGACACAAATAGGTAGCATTTGCCCCTTCCTTCTGGCTGCCTaGAGCACTCTGCTGTTGCAG +
Preference number: 4 (lower is better)
Translates to: SNCESVQQKVTQIGSICPFLLAA*STLLLQ
Trigger: CTGCAACAGCAGAGTGCTGCAGGCAGCCAGAAGGAA...GGGGCAAATGCTACCTATTTGTGTCACCTTTTGCTGAACTGACTCACAGTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CGGGACGATGAAACTGTTTTTGAGACGCCACAGGGACATGCTAGGCAAACGATGGTAAATAAAGAGGTTTaGCCCCTCTGGACCTTCCTT +
Preference number: 4 (lower is better)
Translates to: RDDETVFETPQGHARQTMVNKEV*PLWTFL
Trigger: AAGGAAGGTCCAGAGGGGGCAAACCTCTTTATTTAC...CATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGTCCCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182851.8
CDS-3UTR GCA 90 bp AGCAAGGGACAGCGGAGAGGGTCCAGTTTGAACAAAGGTGACATATGGGGAAGTGTAAATAAAGAGGTTTaGCCCCTCTGGACCTTCCTT +
Preference number: 4 (lower is better)
Translates to: SKGQRRGSSLNKGDIWGSVNKEV*PLWTFL
Trigger: AAGGAAGGTCCAGAGGGGGCAAACCTCTTTATTTAC...ACTTCCCCATATGTCACCTTTGTTCAAACTGGACCCTCTCCGCTGTCCCTTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114924.10
ENSMUST00000182851.8
CDS-3UTR GCA 90 bp GGGACGACAATGGACCTATGGCATTCTGAGCTCCCCTTTGTAAACAGACAGCAAAAGGGCATGAACATCTaGAGAATGTCCTGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: GTTMDLWHSELPFVNRQQKGMNI*RMSWSP
Trigger: TGGAGACCAGGACATTCTGCAGATGTTCATGCCCTT...TTGCTGTCTGTTTACAAAGGGGAGCTCAGAATGCCATAGGTCCATTGTCGTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
CDS-3UTR GCA 90 bp CAGGCCCTGCGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACACAAAACCAAAGCACTTaGTCAGATTGGTCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: QALRTLAAFPFDTERGRTQNQST*SDWSVC
Trigger: ACAAACAGACCAATCTGAGCAAGTGCTTTGGTTTTG...TGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCGCAGGGCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
CDS-3UTR GCA 90 bp CGCACCCTTGCAGCGTTTCCTTTTGATACTGAGAGAGGAAGGACAGTCTGTCTCCTGGATTGCAGCTTGTaGAGAGACTGGATTGTCATA +
Preference number: 4 (lower is better)
Translates to: RTLAAFPFDTERGRTVCLLDCSL*RDWIVI
Trigger: TATGACAATCCAGTCTCTGCACAAGCTGCAATCCAG...GAGACAGACTGTCCTTCCTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
CDS-3UTR GCA 90 bp TGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATTTGGAGCGTTTCAGCTaGACCTTCAAGCGTTTCATG +
Preference number: 4 (lower is better)
Translates to: CVPGHILLLSPVTGQNANLERFS*TFKRFM
Trigger: CATGAAACGCTTGAAGGTGCAGCTGAAACGCTCCAA...ATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR GCA 90 bp CCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAAGTCATCTTGTTGGCTGTaGCGTTACTTAAAAGCAGCT +
Preference number: 4 (lower is better)
Translates to: PLPSLFRTGWLVGLTLRKSSCWL*RYLKAA
Trigger: AGCTGCTTTTAAGTAACGGCACAGCCAACAAGATGA...CTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp GGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAAAGAGCAGCCCTCCATaGTCTGAGACTGATGCATGG +
Preference number: 4 (lower is better)
Translates to: GHARQTMTNGHEDVLRKLKSSPP*SETDAW
Trigger: CCATGCATCAGTCTCAGACCATGGAGGGCTGCTCTT...TAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp ACCAGTGACCGGGCAGAATGCCAATCCCTGTGTAATACTTTCAAGTCTGTTTTATGTGCAAGCTGCTGCTaGAGGCGCCTTTGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: TSDRAECQSLCNTFKSVLCASCC*RRLCSL
Trigger: CAAAGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACA...TAAAACAGACTTGAAAGTATTACACAGGGATTGGCATTCTGCCCGGTCACTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp AATAAGAGCAGGGAGCTTCTGGGGTTAGGATCAGTAAGGTTTGCTGTCGTTTTTTGTGCAAGCTGCTGCTaGAGGCGCCTTTGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: NKSRELLGLGSVRFAVVFCASCC*RRLCSL
Trigger: CAAAGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACA...AAAAACGACAGCAAACCTTACTGATCCTAACCCCAGAAGCTCCCTGCTCTTATT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp GGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTATTGCATTGGTGCTGGTaGCTGAGGTTTGAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: GHARQTMTNGHEDVLRKLLHWCW*LRFEQQ
Trigger: CTGCTGCTCAAACCTCAGCCACCAGCACCAATGCAA...TAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCCACCAGCGGTGGAATTaGGGGTTGAAGCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: SLLETNILCPWTHIAIVTHQRWN*GLKQPQ
Trigger: CTGTGGCTGCTTCAACCCCCAATTCCACCGCTGGTG...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp CATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAAAACACCAGCGGTGGAATTaGGGGTTGAAGCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: HARQTMTNGHEDVLRKLKHQRWN*GLKQPQ
Trigger: CTGTGGCTGCTTCAACCCCCAATTCCACCGCTGGTG...TTTTAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp ATTGTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTCACCAGCGGTGGAATTaGGGGTTGAAGCAGCCACAG +
Preference number: 4 (lower is better)
Translates to: IVKITVSLGKSWHRGPSSHQRWN*GLKQPQ
Trigger: CTGTGGCTGCTTCAACCCCCAATTCCACCGCTGGTG...AGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTACAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
ENSMUST00000183984.8
CDS-3UTR CCA 90 bp GACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATAAAATATAGGTGGCCGCACCAGCGGTaGAATTGGGGGTTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: DAAYSSLSPVHWNSIKYRWPHQR*NWGLKQ
Trigger: CTGCTTCAACCCCCAATTCCACCGCTGGTGCGGCCA...CCTATATTTTATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp GAAAGGCGTATTGTCTTGGAAGCATCAGTCAGGGGTAGGCTGTGGATGAACCAGTATTCAATCCGACAGTaGCTCCAGCCAATCCTTGTA +
Preference number: 4 (lower is better)
Translates to: ERRIVLEASVRGRLWMNQYSIRQ*LQPILV
Trigger: TACAAGGATTGGCTGGAGCCACTGTCGGATTGAATA...CTGGTTCATCCACAGCCTACCCCTGACTGATGCTTCCAAGACAATACGCCTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR CCA 90 bp TGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATCCTATTCAATCCGACAGTaGCTCCAGCCAATCCTTGTA +
Preference number: 4 (lower is better)
Translates to: CPWTHIAIVTSDRAECQSYSIRQ*LQPILV
Trigger: TACAAGGATTGGCTGGAGCCACTGTCGGATTGAATA...GGATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp AAGCACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTCATTCGTCAAGCCTGTaGCGCCAAGTCCTCCATTCA +
Preference number: 4 (lower is better)
Translates to: KHQHDAAYSSLSPVHWNSHSSSL*RQVLHS
Trigger: TGAATGGAGGACTTGGCGCCACAGGCTTGACGAATG...ACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp GGACATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTACATTCGTCAAGCCTGTaGCGCCAAGTCCTCCATTCA +
Preference number: 4 (lower is better)
Translates to: GHARQTMTNGHEDVLRKLHSSSL*RQVLHS
Trigger: TGAATGGAGGACTTGGCGCCACAGGCTTGACGAATG...TAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp CAGAAAGACATCAGAAACAATGACGGGACGATGAAACTGTTTTTGAGACGCCACTCTGGCTGTACAAAGTaGGCAGTGCAGCTGCCGCAT +
Preference number: 4 (lower is better)
Translates to: QKDIRNNDGTMKLFLRRHSGCTK*AVQLPH
Trigger: ATGCGGCAGCTGCACTGCCCACTTTGTACAGCCAGA...GTGGCGTCTCAAAAACAGTTTCATCGTCCCGTCATTGTTTCTGATGTCTTTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp TCTAACTGTGAGTCAGTTCAGCAAAAGGTGACACAAATAGGTAGCATTTGCCCCTCTGGCTGTACAAAGTaGGCAGTGCAGCTGCCGCAT +
Preference number: 4 (lower is better)
Translates to: SNCESVQQKVTQIGSICPSGCTK*AVQLPH
Trigger: ATGCGGCAGCTGCACTGCCCACTTTGTACAGCCAGA...GGGGCAAATGCTACCTATTTGTGTCACCTTTTGCTGAACTGACTCACAGTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR CCA 90 bp CACTTTCGAGAGCAACAGCAGGAACTAGTCCTAGTATTTGGTAGTAATTGTGGTTCTGGACCTTCCTTCTaGCTGCCTGCAGCACTCTGC +
Preference number: 4 (lower is better)
Translates to: HFREQQQELVLVFGSNCGSGPSF*LPAALC
Trigger: GCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTCCAGA...ACCACAATTACTACCAAATACTAGGACTAGTTCCTGCTGTTGCTCTCGAAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
CDS-3UTR CCA 90 bp ATTGTAAAAATAACCGTCTCTCTTGGTAAAAGTTGGCATCGTGGTCCCTCCTCTTCTGGACCTTCCTTCTaGCTGCCTGCAGCACTCTGC +
Preference number: 4 (lower is better)
Translates to: IVKITVSLGKSWHRGPSSSGPSF*LPAALC
Trigger: GCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTCCAGA...AGAGGAGGGACCACGATGCCAACTTTTACCAAGAGAGACGGTTATTTTTACAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
CDS-3UTR CCA 90 bp CCTCCTCTGCCTTCCCTGTTCAGAACAGGCTGGCTTGTGGGACTTACCCTAAGAAGCTTGTGCAGAGACTaGATTGTCATAGCTAACAAA +
Preference number: 4 (lower is better)
Translates to: PPLPSLFRTGWLVGLTLRSLCRD*IVIANK
Trigger: TTTGTTAGCTATGACAATCCAGTCTCTGCACAAGCT...TCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTGAACAGGGAAGGCAGAGGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000142941.8
ENSMUST00000150624.9
ENSMUST00000170438.8
ENSMUST00000183091.8
CDS-3UTR CCA 90 bp GAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGCTCCGTTCATCTTGTTaGCTGTGCCGTTACTTGGTG +
Preference number: 4 (lower is better)
Translates to: ETNILCPWTHIAIVTSDRLRSSC*LCRYLV
Trigger: CACCAAGTAACGGCACAGCCAACAAGATGAACGGAG...CCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000182706.8
ENSMUST00000183209.8
3UTR CAA 72 bp AAACCAACATTCTGTGTCCCTGGACACATATTGCTATaGTCACCAGTGACCGGGCAGAATGCCAATCCCTGT +
Preference number: 4 (lower is better)
Translates to: KPTFCVPGHILL*SPVTGQNANPC
Trigger: ACAGGGATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
3UTR CAA 72 bp GAAGAGCAGCTGATCTCCTCTTACATGGCCAACCACTaGAAATGTGTGGGCTTTTCAGGAAGACACCTTGCA +
Preference number: 4 (lower is better)
Translates to: EEQLISSYMANH*KCVGFSGRHLA
Trigger: TGCAAGGTGTCTTCCTGAAAAGCCCACACATTTCAAGTGGTTGGCCATGTAAGAGGAGATCAGCTGCTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp CAGAAAGACATCAGAAACAATGACGGGACGATGAAACTGTTTTTGAGACGCCACTGGGTCTGGCTGGTCTaGATGATCCAAAGCTCCGTT +
Preference number: 4 (lower is better)
Translates to: QKDIRNNDGTMKLFLRRHWVWLV*MIQSSV
Trigger: AACGGAGCTTTGGATCATTCAGACCAGCCAGACCCA...GTGGCGTCTCAAAAACAGTTTCATCGTCCCGTCATTGTTTCTGATGTCTTTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp AGAAAGCCAGCACAGGTGTCACTAGGAATCAGCTTTTGTCAGAGTAGGAGCAGGCGGCATTCTTCTATCTaGCCGAATGGAGAAAACATC +
Preference number: 4 (lower is better)
Translates to: RKPAQVSLGISFCQSRSRRHSSI*PNGENI
Trigger: GATGTTTTCTCCATTCGGTCAGATAGAAGAATGCCG...CCTGCTCCTACTCTGACAAAAGCTGATTCCTAGTGACACCTGTGCTGGCTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000170438.8
CDS-3UTR TCA 90 bp TGTGTCCCTGGACACATATTGCTATTGTCACCAGTGACCGGGCAGAATGCCAATCGGCATTCTTCTATCTaGCCGAATGGAGAAAACATC +
Preference number: 4 (lower is better)
Translates to: CVPGHILLLSPVTGQNANRHSSI*PNGENI
Trigger: GATGTTTTCTCCATTCGGTCAGATAGAAGAATGCCG...ATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp AGTCTGTTAGAAACCAACATTCTGTGTCCCTGGACACATATTGCTATTGTCACCCCCAAGTGGCAGTGTTaGGCTGTTGCATCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: SLLETNILCPWTHIAIVTPKWQC*AVASAV
Trigger: CACAGCAGATGCAACAGCTCAACACTGCCACTTGGG...GGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAACAGACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp CATGCTAGGCAAACGATGACTAACGGGCATGAAGATGTCCTAAGAAAGCTAAAACCCAAGTGGCAGTGTTaGGCTGTTGCATCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: HARQTMTNGHEDVLRKLKPKWQC*AVASAV
Trigger: CACAGCAGATGCAACAGCTCAACACTGCCACTTGGG...TTTTAGCTTTCTTAGGACATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114927.9
ENSMUST00000114934.11
ENSMUST00000182706.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp ACCAGTGACCGGGCAGAATGCCAATCCCTGTGTAATACTTTCAAGTCTGTTTTATTTGCTGAATGCCACTaGATGCACCCAGGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: TSDRAECQSLCNTFKSVLFAECH*MHPGCW
Trigger: CCAGCAACCTGGGTGCATTCAGTGGCATTCAGCAAA...TAAAACAGACTTGAAAGTATTACACAGGGATTGGCATTCTGCCCGGTCACTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp CAGAAAGACATCAGAAACAATGACGGGACGATGAAACTGTTTTTGAGACGCCACTTTGCTGAATGCCACTaGATGCACCCAGGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: QKDIRNNDGTMKLFLRRHFAECH*MHPGCW
Trigger: CCAGCAACCTGGGTGCATTCAGTGGCATTCAGCAAA...GTGGCGTCTCAAAAACAGTTTCATCGTCCCGTCATTGTTTCTGATGTCTTTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp CACCAACATGACGCAGCTTACAGTAGCCTTTCTCCTGTACATTGGAACAGTATATTTGCTGAATGCCACTaGATGCACCCAGGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: HQHDAAYSSLSPVHWNSIFAECH*MHPGCW
Trigger: CCAGCAACCTGGGTGCATTCAGTGGCATTCAGCAAA...TATACTGTTCCAATGTACAGGAGAAAGGCTACTGTAAGCTGCGTCATGTTGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp TCTAACTGTGAGTCAGTTCAGCAAAAGGTGACACAAATAGGTAGCATTTGCCCCATGCCAGCCATTTGCTaGATGCCACTGAATGCACCC +
Preference number: 4 (lower is better)
Translates to: SNCESVQQKVTQIGSICPMPAIC*MPLNAP
Trigger: GGGTGCATTCAGTGGCATTCAGCAAATGGCTGGCAT...GGGGCAAATGCTACCTATTTGTGTCACCTTTTGCTGAACTGACTCACAGTTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11
ENSMUST00000114924.10
ENSMUST00000114934.11
ENSMUST00000170438.8
ENSMUST00000182706.8
ENSMUST00000182851.8
ENSMUST00000182879.8
ENSMUST00000183209.8
CDS-3UTR TCA 90 bp TTGTACACGAGGGCATACCATGAAACCCTTATCAAAAAGCAGACACGGTCTTTAATACTGCTGAATTCCTaGGTAGGCCTGGGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: LYTRAYHETLIKKQTRSLILLNS*VGLGQG
Trigger: GCCCTGACCCAGGCCTACTCAGGAATTCAGCAGTAT...TAAAGACCGTGTCTGCTTTTTGATAAGGGTTTCATGGTATGCCCTCGTGTACAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000002176.13
ENSMUST00000100429.11