RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CECR2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071226

Ensembl transcript IDs: ENSMUST00000100993.9, ENSMUST00000112686.8, ENSMUST00000129803.2, ENSMUST00000143563.2

Found 472 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCTTCACTGTGGAGTCGCCATCTAACTAAGTTGCTCAGGCAAGGCTaGACTTATGGTCCTCCAGCCCCAGCCTTGGAGCTGGGATTACAG +
Preference number: 1 (lower is better)
Translates to: SSLWSRHLTKLLRQG*TYGPPAPALELGLQ
Trigger: CTGTAATCCCAGCTCCAAGGCTGGGGCTGGAGGACCATAAGTTCAGCCTTGCCTGAGCAACTTAGTTAGATGGCGACTCCACAGTGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR TCA 90 bp AGAGGCTCAGCACTGTGTTCTGGCTGCTCCAGGAAACCTAGCACCTaGAAGACCAATAAAAGTTGGGGCCAGACCAGGAGAGGAAGTACT +
Preference number: 1 (lower is better)
Translates to: RGSALCSGCSRKPST*KTNKSWGQTRRGST
Trigger: AGTACTTCCTCTCCTGGTCTGGCCCCAACTTTTATTGGTCTTTCAGGTGCTAGGTTTCCTGGAGCAGCCAGAACACAGTGCTGAGCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR GCA 90 bp AACTCAGAGGTCTTTCTGCCTCTGCCTGCTGGAATTAAAGGCCTGTaGCACCATGCTGGGCTCACACTGGAACTAAAGCAGTGCTGTAAA +
Preference number: 1 (lower is better)
Translates to: NSEVFLPLPAGIKGL*HHAGLTLELKQCCK
Trigger: TTTACAGCACTGCTTTAGTTCCAGTGTGAGCCCAGCATGGTGGCACAGGCCTTTAATTCCAGCAGGCAGAGGCAGAAAGACCTCTGAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CCA 90 bp TCAGGCAAGGCTGAACTTATGGTCCTCCAGCCCCAGCCTTGGAGCTaGGATTACAGCTCCATTCCACCAGACCTTCTTTATTATTTCGAC +
Preference number: 1 (lower is better)
Translates to: SGKAELMVLQPQPWS*DYSSIPPDLLYYFD
Trigger: GTCGAAATAATAAAGAAGGTCTGGTGGAATGGAGCTGTAATCCCAGCTCCAAGGCTGGGGCTGGAGGACCATAAGTTCAGCCTTGCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CCA 90 bp AGTTGCTCAGGCAAGGCTGAACTTATGGTCCTCCAGCCCCAGCCTTaGAGCTGGGATTACAGCTCCATTCCACCAGACCTTCTTTATTAT +
Preference number: 1 (lower is better)
Translates to: SCSGKAELMVLQPQP*SWDYSSIPPDLLYY
Trigger: ATAATAAAGAAGGTCTGGTGGAATGGAGCTGTAATCCCAGCTCCAAGGCTGGGGCTGGAGGACCATAAGTTCAGCCTTGCCTGAGCAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR GCA 90 bp AAAGGCCTGTGCCACCATGCTGGGCTCACACTGGAACTAAAGCAGTaGTGTAAATTCATGGGGGAAGGGGCAATGTTTCTGCATGTTTCA +
Preference number: 1 (lower is better)
Translates to: KGLCHHAGLTLELKQ*CKFMGEGAMFLHVS
Trigger: TGAAACATGCAGAAACATTGCCCCTTCCCCCATGAATTTACAGCACTGCTTTAGTTCCAGTGTGAGCCCAGCATGGTGGCACAGGCCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CCA 90 bp AAGAAAACTCTCGTGTGTGTGCGCCATAACCTGGGAAACACTCTCTaGGTCCTCAGCAACACCAGCAGGTTAGTAAGCAGCCACTTTTAT +
Preference number: 1 (lower is better)
Translates to: KKTLVCVRHNLGNTL*VLSNTSRLVSSHFY
Trigger: ATAAAAGTGGCTGCTTACTAACCTGCTGGTGTTGCTGAGGACCCAGAGAGTGTTTCCCAGGTTATGGCGCACACACACGAGAGTTTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CCA 90 bp AGGGCATTCACTTCTGTAGCAATGTCCAATATACTGTGTGCAGACTaGCAATGTGGGGCTAGGGCCCACGAGTCAAATGAGAGATATATC +
Preference number: 1 (lower is better)
Translates to: RAFTSVAMSNILCAD*QCGARAHESNERYI
Trigger: GATATATCTCTCATTTGACTCGTGGGCCCTAGCCCCACATTGCCAGTCTGCACACAGTATATTGGACATTGCTACAGAAGTGAATGCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR TCA 90 bp CAGCCTTACATGTACCCTCCACCCAAGTTTAAAGTGATTTTTCCCTaGACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGG +
Preference number: 1 (lower is better)
Translates to: QPYMYPPPKFKVIFP*TRVLGFGEASKNSR
Trigger: CCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGAAAAATCACTTTAAACTTGGGTGGAGGGTACATGTAAGGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR TCA 90 bp AAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTTTAAAGTaGTTTTTCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCA +
Preference number: 1 (lower is better)
Translates to: KHHSSLTCTLHPSLK*FFPEQESWDLEKPA
Trigger: TGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGAAAAATCACTTTAAACTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR GCA 90 bp ATAGTATGCTGGCCATATCGGGGAAGGAATCCCAACTCCTCCATGTaGCCACCTGACTGTCCCACTATATATACAATACATTCACCACAA +
Preference number: 1 (lower is better)
Translates to: IVCWPYRGRNPNSSM*PPDCPTIYTIHSPQ
Trigger: TTGTGGTGAATGTATTGTATATATAGTGGGACAGTCAGGTGGGCACATGGAGGAGTTGGGATTCCTTCCCCGATATGGCCAGCATACTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR TCA 90 bp ACAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATaGAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACC +
Preference number: 1 (lower is better)
Translates to: TSSPFPKYIPEISCS*KFKSTTPALHVPST
Trigger: GGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR TCA 90 bp ATTTGTGCTAGAAAGCACTGTATGATGCCTTCTAGATCACAGGCCTaGCAGGCCCATGGAGAAGCCACTTTATCTTCTAATAAAACACTC +
Preference number: 1 (lower is better)
Translates to: ICARKHCMMPSRSQA*QAHGEATLSSNKTL
Trigger: GAGTGTTTTATTAGAAGATAAAGTGGCTTCTCCATGGGCCTGTCAGGCCTGTGATCTAGAAGGCATCATACAGTGCTTTCTAGCACAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CCA 90 bp CACAATTCTGACTTCGCTGCTCTTCTAAACTGGATTGCAGATGTCTaGCTTCTGATTCAAGAGACTTGCAAACACAAATTAAACAGGAAA +
Preference number: 1 (lower is better)
Translates to: HNSDFAALLNWIADV*LLIQETCKHKLNRK
Trigger: TTTCCTGTTTAATTTGTGTTTGCAAGTCTCTTGAATCAGAAGCCAGACATCTGCAATCCAGTTTAGAAGAGCAGCGAAGTCAGAATTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR TCA 90 bp CTGACCAAGTGGTATGACTTGAGTCATGTTGATGGCAAACATAGTTaGGAACTACATTGGGACATTTGTGTGTTTAAGACTACATTGAAC +
Preference number: 1 (lower is better)
Translates to: LTKWYDLSHVDGKHS*ELHWDICVFKTTLN
Trigger: GTTCAATGTAGTCTTAAACACACAAATGTCCCAATGTAGTTCTCAACTATGTTTGCCATCAACATGACTCAAGTCATACCACTTGGTCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CCA 90 bp GTAGAAGTTAACGTAGAGAACAACCATACAGCAAACAAATGTCATTaGACAATAACACCATGGCCAGTCAAGAGACAGACTAGAGTAATT +
Preference number: 1 (lower is better)
Translates to: VEVNVENNHTANKCH*TITPWPVKRQTRVI
Trigger: AATTACTCTAGTCTGTCTCTTGACTGGCCATGGTGTTATTGTCCAATGACATTTGTTTGCTGTATGGTTGTTCTCTACGTTAACTTCTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR-3UTR GCA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTCAAGTCCGCCAGGCCTaGCTTCGGGTCTCCACATGC +
Preference number: 2 (lower is better)
Translates to: FVSCADDPSYRPASHLKSQVRQA*LRVSTC
Trigger: GCATGTGGAGACCCGAAGGCAGGCCTGGCGGACTTG...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR-3UTR CCA 90 bp GAAGGCTTGATTCACAGTGAAGAGGTGGAGCAGGACGACAGGACAGAGATGTACAGCCGTCCACTTCCTTaGGGCTTAGTTCCTCCCTGG +
Preference number: 2 (lower is better)
Translates to: EGLIHSEEVEQDDRTEMYSRPLP*GLVPPW
Trigger: CCAGGGAGGAACTAAGCCCCAAGGAAGTGGACGGCT...GTACATCTCTGTCCTGTCGTCCTGCTCCACCTCTTCACTGTGAATCAAGCCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR CAA 90 bp TTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTGGCTAAGTTaGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATC +
Preference number: 2 (lower is better)
Translates to: LEKPARTPGPLLWLS*SAVQMIPAIGQPVI
Trigger: GATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAACTTAGCCAGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR-3UTR CCA 90 bp GGAAGGTCTAAGCCAGGTCCTAAGGCTCTAAGGAGTTCAGTGTGCTCAAACAGAGCAAGGCTGAACTTATaGTCCTCCAGCCCCAGCCTT +
Preference number: 2 (lower is better)
Translates to: GRSKPGPKALRSSVCSNRARLNL*SSSPSL
Trigger: AAGGCTGGGGCTGGAGGACCATAAGTTCAGCCTTGC...TCTGTTTGAGCACACTGAACTCCTTAGAGCCTTAGGACCTGGCTTAGACCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR-3UTR TCA 90 bp GGAAGGTCTAAGCCAGGTCCTAAGGCTCTAAGGAGTTCAGTGTGCTCAAACAGAGCATTCAGTGTGACCTaGCTGCACAAAGACAGAGAC +
Preference number: 2 (lower is better)
Translates to: GRSKPGPKALRSSVCSNRAFSVT*LHKDRD
Trigger: GTCTCTGTCTTTGTGCAGTCAGGTCACACTGAATGC...TCTGTTTGAGCACACTGAACTCCTTAGAGCCTTAGGACCTGGCTTAGACCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR-3UTR GCA 90 bp GGAAGGTCTAAGCCAGGTCCTAAGGCTCTAAGGAGTTCAGTGTGCTCAAACAGAAGGTCTTTCTGCCTCTaGCTGCTGGAATTAAAGGCC +
Preference number: 2 (lower is better)
Translates to: GRSKPGPKALRSSVCSNRRSFCL*LLELKA
Trigger: GGCCTTTAATTCCAGCAGGCAGAGGCAGAAAGACCT...TCTGTTTGAGCACACTGAACTCCTTAGAGCCTTAGGACCTGGCTTAGACCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CAA 90 bp CAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATaGCTCTGGCTAAGTTTGTCAGCTGTGCAGATGATCCCAGCTATA +
Preference number: 2 (lower is better)
Translates to: QESWDLEKPARTPGP*LWLSLSAVQMIPAI
Trigger: TATAGCTGGGATCATCTGCACAGCTGACAAACTTAGCCAGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR-3UTR TCA 90 bp ACTTTGAACTCAGAGGTCTTTCTGCCTCTGCCTGCTGGAATTAAAGGCCTGTGCAGGCAACATGAAATTTaGTTGGAGGAGACCACGGGT +
Preference number: 2 (lower is better)
Translates to: TLNSEVFLPLPAGIKGLCRQHEI*LEETTG
Trigger: ACCCGTGGTCTCCTCCAATCAAATTTCATGTTGCCT...GCACAGGCCTTTAATTCCAGCAGGCAGAGGCAGAAAGACCTCTGAGTTCAAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR-3UTR TCA 90 bp TTAGCTGCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCAAGGCTTGATTCACAGTaGAGAGGTGGAGCAGGACGA +
Preference number: 2 (lower is better)
Translates to: LAAHESLKAPLQPYMYPPRLDSQ*RGGAGR
Trigger: TCGTCCTGCTCCACCTCTTCACTGTGAATCAAGCCT...TGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR-3UTR TCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTTATGCTGTTCAGCTCTaGGGAAGGCTTGATTCACAG +
Preference number: 2 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSYAVQL*GRLDSQ
Trigger: CTGTGAATCAAGCCTTCCTCAGAGCTGAACAGCATA...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR-3UTR TCA 90 bp GGAAGGTCTAAGCCAGGTCCTAAGGCTCTAAGGAGTTCAGTGTGCTCAAACAGACAGATGTCTGGCTTCTaGTTCAAGAGACTTGCAAAC +
Preference number: 2 (lower is better)
Translates to: GRSKPGPKALRSSVCSNRQMSGF*FKRLAN
Trigger: GTTTGCAAGTCTCTTGAATCAGAAGCCAGACATCTG...TCTGTTTGAGCACACTGAACTCCTTAGAGCCTTAGGACCTGGCTTAGACCTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR-3UTR TCA 90 bp ACTTTGAACTCAGAGGTCTTTCTGCCTCTGCCTGCTGGAATTAAAGGCCTGTGCCCACTCTTTCCCTACTaGAGACTGCAAACAGAATTA +
Preference number: 2 (lower is better)
Translates to: TLNSEVFLPLPAGIKGLCPLFPY*RLQTEL
Trigger: TAATTCTGTTTGCAGTCTTCAGTAGGGAAAGAGTGG...GCACAGGCCTTTAATTCCAGCAGGCAGAGGCAGAAAGACCTCTGAGTTCAAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR-3UTR TCA 90 bp GGAAGGTCTAAGCCAGGTCCTAAGGCTCTAAGGAGTTCAGTGTGCTCAAACAGAGATGGCAAACATAGTTaGGAACTACATTGGGACATT +
Preference number: 2 (lower is better)
Translates to: GRSKPGPKALRSSVCSNRDGKHS*ELHWDI
Trigger: AATGTCCCAATGTAGTTCTCAACTATGTTTGCCATC...TCTGTTTGAGCACACTGAACTCCTTAGAGCCTTAGGACCTGGCTTAGACCTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR-3UTR GCA 90 bp AAACTAACTATTGAGGTAATTGTCGCTCTCAGTGAAACAGCAGGGAACCAGCAGGGGCCAGATTGTTGCTaGAGTCCTAGTGAGATTTAC +
Preference number: 2 (lower is better)
Translates to: KLTIEVIVALSETAGNQQGPDCC*SPSEIY
Trigger: GTAAATCTCACTAGGACTGCAGCAACAATCTGGCCC...CTGCTGGTTCCCTGCTGTTTCACTGAGAGCGACAATTACCTCAATAGTTAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR-3UTR CCA 90 bp TTAGCTGCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCTGAACAAGAGTCTTaGGATTTGGAGAAGCCAGCA +
Preference number: 2 (lower is better)
Translates to: LAAHESLKAPLQPYMYPPPEQES*DLEKPA
Trigger: TGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGG...TGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR-3UTR TCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTATATGCTGTTCAGCTCTaGGGAAGGCTTGATTCACAG +
Preference number: 2 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLYAVQL*GRLDSQ
Trigger: CTGTGAATCAAGCCTTCCTCAGAGCTGAACAGCATA...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR-3UTR GCA 90 bp CAACCATACAGCAAACAAATGTCATTGGACAATAACACCATGGCCAGTCAAGAGTCCAATTGTTTTCCCTaGAATCCTCCTAGACTAGTC +
Preference number: 2 (lower is better)
Translates to: QPYSKQMSLDNNTMASQESNCFP*NPPRLV
Trigger: GACTAGTCTAGGAGGATTGCAGGGAAAACAATTGGA...CTCTTGACTGGCCATGGTGTTATTGTCCAATGACATTTGTTTGCTGTATGGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CAA 90 bp TCTTCTAAACTGGATTGCAGATGTCTGGCTTCTGATTCAAGAGACTaGCAAACACAAATTAAACAGGAAAGAAAACTCTCGTGTGTGTGC +
Preference number: 2 (lower is better)
Translates to: SSKLDCRCLASDSRD*QTQIKQERKLSCVC
Trigger: GCACACACACGAGAGTTTTCTTTCCTGTTTAATTTGTGTTTGCAAGTCTCTTGAATCAGAAGCCAGACATCTGCAATCCAGTTTAGAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CAA 90 bp TCTGGCTCAGAAAGCAAGAGTAGCTGTACATTTATTTTTAAGAGATaGGACGGAAAGTTACATGAACAAGAGCCCTGCATAGTCTATCCT +
Preference number: 2 (lower is better)
Translates to: SGSESKSSCTFIFKR*DGKLHEQEPCIVYP
Trigger: AGGATAGACTATGCAGGGCTCTTGTTCATGTAACTTTCCGTCCAATCTCTTAAAAATAAATGTACAGCTACTCTTGCTTTCTGAGCCAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR TCA 72 bp TGGAGTCGCCATCTAACTAAGTTGCTCAGGCAAGGCTaGACTTATGGTCCTCCAGCCCCAGCCTTGGAGCTG +
Preference number: 3 (lower is better)
Translates to: WSRHLTKLLRQG*TYGPPAPALEL
Trigger: CAGCTCCAAGGCTGGGGCTGGAGGACCATAAGTTCAGCCTTGCCTGAGCAACTTAGTTAGATGGCGACTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CCA 72 bp CTCGTGTGTGTGCGCCATAACCTGGGAAACACTCTCTaGGTCCTCAGCAACACCAGCAGGTTAGTAAGCAGC +
Preference number: 3 (lower is better)
Translates to: LVCVRHNLGNTL*VLSNTSRLVSS
Trigger: GCTGCTTACTAACCTGCTGGTGTTGCTGAGGACCCAGAGAGTGTTTCCCAGGTTATGGCGCACACACACGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR-3UTR CAA 90 bp ACTTTGAACTCAGAGGTCTTTCTGCCTCTGCCTGCTGGAATTAAAGGCCTGTGCGCTGAGGAGGACATCTaGTCTCGGAGGTCGGCTGGA +
Preference number: 3 (lower is better)
Translates to: TLNSEVFLPLPAGIKGLCAEEDI*SRRSAG
Trigger: TCCAGCCGACCTCCGAGACAAGATGTCCTCCTCAGC...GCACAGGCCTTTAATTCCAGCAGGCAGAGGCAGAAAGACCTCTGAGTTCAAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR TCA 72 bp ACCTCAAGTATGTATGCTGCACAAGTGTTCTACCACTaGGCACCACCCCACCCCTCTTCACTGTGGAGTCGC +
Preference number: 3 (lower is better)
Translates to: TSSMYAAQVFYH*APPHPSSLWSR
Trigger: GCGACTCCACAGTGAAGAGGGGTGGGGTGGTGCTCAGTGGTAGAACACTTGTGCAGCATACATACTTGAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR TCA 72 bp AGCCACATTGACAGCACCGTCCAACCAACTGTGAAATaGATGCTGAGGAGGACATCTTGTCTCGGAGGTCGG +
Preference number: 3 (lower is better)
Translates to: SHIDSTVQPTVK*MLRRTSCLGGR
Trigger: CCGACCTCCGAGACAAGATGTCCTCCTCAGCATTCATTTCACAGTTGGTTGGACGGTGCTGTCAATGTGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CCA 72 bp TTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTaGCTAAGTTTGTCAGCTGTGCAGATGATCCCAGCT +
Preference number: 3 (lower is better)
Translates to: LEKPARTPGPLL*LSLSAVQMIPA
Trigger: AGCTGGGATCATCTGCACAGCTGACAAACTTAGCCAGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR CCA 72 bp CTGCACAAAGACAGAGACTCGTCCAGTATAGTATGCTaGCCATATCGGGGAAGGAATCCCAACTCCTCCATG +
Preference number: 3 (lower is better)
Translates to: LHKDRDSSSIVC*PYRGRNPNSSM
Trigger: CATGGAGGAGTTGGGATTCCTTCCCCGATATGGCCAGCATACTATACTGGACGAGTCTCTGTCTTTGTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CCA 72 bp CTGACACAGATCTTAGCACCAAGGCTAAGCTTGTGTTaGCCTACTGTGATTGGGCACGCAACTCATCTACTC +
Preference number: 3 (lower is better)
Translates to: LTQILAPRLSLC*PTVIGHATHLL
Trigger: GAGTAGATGAGTTGCGTGCCCAATCACAGTAGGCCAACACAAGCTTAGCCTTGGTGCTAAGATCTGTGTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR-3UTR CAA 90 bp GCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGAGCTCTGAGGAAGGCTaGATTCACAGTGAAGAGGTG +
Preference number: 3 (lower is better)
Translates to: AHESLKAPLQPYMYPPPKSSEEG*IHSEEV
Trigger: CACCTCTTCACTGTGAATCAAGCCTTCCTCAGAGCT...CTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR TCA 72 bp TCGGGGAAGGAATCCCAACTCCTCCATGTGCCCACCTaGCTGTCCCACTATATATACAATACATTCACCACA +
Preference number: 3 (lower is better)
Translates to: SGKESQLLHVPT*LSHYIYNTFTT
Trigger: TGTGGTGAATGTATTGTATATATAGTGGGACAGTCAGGTGGGCACATGGAGGAGTTGGGATTCCTTCCCCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR TCA 72 bp TTTCCCTGCAATCCTCCTAGACTAGTCTGCATTTCCTaGGGACACTGGAACTGGAGGGAAAACTCCATTGAC +
Preference number: 3 (lower is better)
Translates to: FPCNPPRLVCIS*GHWNWRENSID
Trigger: GTCAATGGAGTTTTCCCTCCAGTTCCAGTGTCCTCAGGAAATGCAGACTAGTCTAGGAGGATTGCAGGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR TCA 72 bp GAGAAGTTCACAGGCTCAGATAGGTGCCTCATCAGGTaGCCCAAAACCAATCTGGCTCAGAAAGCAAGAGTA +
Preference number: 3 (lower is better)
Translates to: EKFTGSDRCLIR*PKTNLAQKARV
Trigger: TACTCTTGCTTTCTGAGCCAGATTGGTTTTGGGTCACCTGATGAGGCACCTATCTGAGCCTGTGAACTTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR TCA 72 bp CCCACATTCCAGAAATCCTCCAGACTGAACACTCACTaGTACACTCTTGTGAAGGGAACGTCACATCAGGGT +
Preference number: 3 (lower is better)
Translates to: PTFQKSSRLNTH*YTLVKGTSHQG
Trigger: ACCCTGATGTGACGTTCCCTTCACAAGAGTGTATCAGTGAGTGTTCAGTCTGGAGGATTTCTGGAATGTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR GCA 72 bp TGGCCATATCGGGGAAGGAATCCCAACTCCTCCATGTaGCCACCTGACTGTCCCACTATATATACAATACAT +
Preference number: 3 (lower is better)
Translates to: WPYRGRNPNSSM*PPDCPTIYTIH
Trigger: ATGTATTGTATATATAGTGGGACAGTCAGGTGGGCACATGGAGGAGTTGGGATTCCTTCCCCGATATGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CCA 72 bp AGCACCAAGGCTAAGCTTGTGTTGGCCTACTGTGATTaGGCACGCAACTCATCTACTCAAAAGGAAGGTCTA +
Preference number: 3 (lower is better)
Translates to: STKAKLVLAYCD*ARNSSTQKEGL
Trigger: TAGACCTTCCTTTTGAGTAGATGAGTTGCGTGCCCAATCACAGTAGGCCAACACAAGCTTAGCCTTGGTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR GCA 72 bp GGCTGGAGAGGAAACAAGTTAGTGACATATATAAGCTaGAGTCTTCTGGGTCTCTTCTCCAAGTTCCTCAGG +
Preference number: 3 (lower is better)
Translates to: GWRGNKLVTYIS*SLLGLFSKFLR
Trigger: CCTGAGGAACTTGGAGAAGAGACCCAGAAGACTGCAGCTTATATATGTCACTAACTTGTTTCCTCTCCAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR TCA 72 bp AGAAAGCACTGTATGATGCCTTCTAGATCACAGGCCTaGCAGGCCCATGGAGAAGCCACTTTATCTTCTAAT +
Preference number: 3 (lower is better)
Translates to: RKHCMMPSRSQA*QAHGEATLSSN
Trigger: ATTAGAAGATAAAGTGGCTTCTCCATGGGCCTGTCAGGCCTGTGATCTAGAAGGCATCATACAGTGCTTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR TCA 72 bp TTTCACCCAAATGCCAAGTGTCTTTGCTATAGCTGTTaGCAAGAGCTGCCCACATTCCAGAAATCCTCCAGA +
Preference number: 3 (lower is better)
Translates to: FHPNAKCLCYSC*QELPTFQKSSR
Trigger: TCTGGAGGATTTCTGGAATGTGGGCAGCTCTTGTCAACAGCTATAGCAAAGACACTTGGCATTTGGGTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR GCA 72 bp ACACAAATTAAACAGGAAAGAAAACTCTCGTGTGTGTaGGCCATAACCTGGGAAACACTCTCTGGGTCCTCA +
Preference number: 3 (lower is better)
Translates to: TQIKQERKLSCV*AITWETLSGSS
Trigger: TGAGGACCCAGAGAGTGTTTCCCAGGTTATGGCGCACACACACGAGAGTTTTCTTTCCTGTTTAATTTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR-3UTR CAA 90 bp CAACCATACAGCAAACAAATGTCATTGGACAATAACACCATGGCCAGTCAAGAGTCTAGTTTTAGCACCTaGACACTGTGGGGCCAGATT +
Preference number: 3 (lower is better)
Translates to: QPYSKQMSLDNNTMASQESSFST*TLWGQI
Trigger: AATCTGGCCCCACAGTGTCAAGGTGCTAAAACTAGA...CTCTTGACTGGCCATGGTGTTATTGTCCAATGACATTTGTTTGCTGTATGGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR TCA 72 bp ATGTACCCTCCACCCAAGTTTAAAGTGATTTTTCCCTaGACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAG +
Preference number: 3 (lower is better)
Translates to: MYPPPKFKVIFP*TRVLGFGEASK
Trigger: CTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGAAAAATCACTTTAAACTTGGGTGGAGGGTACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR CCA 72 bp CAACAGCACAATTCTGACTTCGCTGCTCTTCTAAACTaGATTGCAGATGTCTGGCTTCTGATTCAAGAGACT +
Preference number: 3 (lower is better)
Translates to: QQHNSDFAALLN*IADVWLLIQET
Trigger: AGTCTCTTGAATCAGAAGCCAGACATCTGCAATCCAGTTTAGAAGAGCAGCGAAGTCAGAATTGTGCTGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR-3UTR CAA 90 bp TTCTGTAAACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCAAGAGTCTTGGGATTaGGAGAAGCCAGCAAGAACT +
Preference number: 3 (lower is better)
Translates to: FCKLDPAPKTLILQVVPSQESWD*EKPART
Trigger: AGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTG...GGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGTTTACAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR-3UTR CAA 90 bp AAACTAACTATTGAGGTAATTGTCGCTCTCAGTGAAACAGCAGGGAACCAGCAGAAACACCTGAGGATTTaGACACCTGATCTTGACTCT +
Preference number: 3 (lower is better)
Translates to: KLTIEVIVALSETAGNQQKHLRI*TPDLDS
Trigger: AGAGTCAAGATCAGGTGTCAAAATCCTCAGGTGTTT...CTGCTGGTTCCCTGCTGTTTCACTGAGAGCGACAATTACCTCAATAGTTAGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CCA 72 bp CATACAGCAAACAAATGTCATTGGACAATAACACCATaGCCAGTCAAGAGACAGACTAGAGTAATTGACATT +
Preference number: 3 (lower is better)
Translates to: HTANKCHWTITP*PVKRQTRVIDI
Trigger: AATGTCAATTACTCTAGTCTGTCTCTTGACTGGCCATGGTGTTATTGTCCAATGACATTTGTTTGCTGTATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CCA 72 bp CCAGCAAGTATCAATCACATTTGTCACATTCATTCTTaGGGTTTGTTTGCTATTTTAATGGGGGTCTCACTA +
Preference number: 3 (lower is better)
Translates to: PASINHICHIHS*GLFAILMGVSL
Trigger: TAGTGAGACCCCCATTAAAATAGCAAACAAACCCCAAGAATGAATGTGACAAATGTGATTGATACTTGCTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp GACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCACTCTGATCGTCCCCTaGGGAGGCAGCTCGGCGTGC +
Preference number: 4 (lower is better)
Translates to: DDRTEMYNSHSSKSARPATLIVP*GGSSAC
Trigger: GCACGCCGAGCTGCCTCCTCAGGGGACGATCAGAGT...GGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CTTCGGGTCTCCACATGCAGCCGTCCACTTCCTTGGGGCTTAGTTCCTCCCTGGTACTGGATGGGGAGGTaGATGGGCAGGCACAGGGGA +
Preference number: 4 (lower is better)
Translates to: LRVSTCSRPLPWGLVPPWYWMGR*MGRHRG
Trigger: TCCCCTGTGCCTGCCCATCCACCTCCCCATCCAGTA...CCAGGGAGGAACTAAGCCCCAAGGAAGTGGACGGCTGCATGTGGAGACCCGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp GACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCAGGGAGCGTGGAGGGTaGCTTCCTGGGGGTCCACTT +
Preference number: 4 (lower is better)
Translates to: DDRTEMYNSHSSKSARPARERGG*LPGGPL
Trigger: AAGTGGACCCCCAGGAAGTCACCCTCCACGCTCCCT...GGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCAAGGGACCAGGTAACTaGGGAGGAGTGGGCTGGCGG +
Preference number: 4 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQAKGPGN*GGVGWR
Trigger: CCGCCAGCCCACTCCTCCCCAGTTACCTGGTCCCTT...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CTTCGGGTCTCCACATGCAGCCGTCCACTTCCTTGGGGCTTAGTTCCTCCCTGGTGTCCAATGCAGGCTTaGGCGCCGACACACAGACTG +
Preference number: 4 (lower is better)
Translates to: LRVSTCSRPLPWGLVPPWCPMQA*APTHRL
Trigger: CAGTCTGTGTGTCGGCGCCCAAGCCTGCATTGGACA...CCAGGGAGGAACTAAGCCCCAAGGAAGTGGACGGCTGCATGTGGAGACCCGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTGGGTGGCTACTGGATaGGGAGGTGGATGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: DDRTEMYNSHSSKSARPAWVATG*GGGWAG
Trigger: GCCTGCCCATCCACCTCCCCATCCAGTAGCCACCCA...GGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCGCAGGCGGAACGCCGTaGGAAAGAGCGAGCAGAAGT +
Preference number: 4 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQAAGGTP*ERASRS
Trigger: ACTTCTGCTCGCTCTTTCGCACGGCGTTCCGCCTGC...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp CTTCGGGTCTCCACATGCAGCCGTCCACTTCCTTGGGGCTTAGTTCCTCCCTGGGGAGTTGGAGGTGGCTaGAAACGATGTCCAGCAGAC +
Preference number: 4 (lower is better)
Translates to: LRVSTCSRPLPWGLVPPWGVGGG*KRCPAD
Trigger: GTCTGCTGGACATCGTTTGCAGCCACCTCCAACTCC...CCAGGGAGGAACTAAGCCCCAAGGAAGTGGACGGCTGCATGTGGAGACCCGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GGTGGAGCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCAGCAGAAGTGCGCGATaGCCGGGACTTCCCACCAGG +
Preference number: 4 (lower is better)
Translates to: GGAGRQDRDVQQSFLQVRSRSAR*PGLPTR
Trigger: CCTGGTGGGAAGTCCCGGCCATCGCGCACTTCTGCT...GCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGCTCCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CTTCGGGTCTCCACATGCAGCCGTCCACTTCCTTGGGGCTTAGTTCCTCCCTGGCCAAGTACCTTGGCCTaGCCCTCGGGATCCATTTCT +
Preference number: 4 (lower is better)
Translates to: LRVSTCSRPLPWGLVPPWPSTLA*PSGSIS
Trigger: AGAAATGGATCCCGAGGGCCAGGCCAAGGTACTTGG...CCAGGGAGGAACTAAGCCCCAAGGAAGTGGACGGCTGCATGTGGAGACCCGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CTTCGGGTCTCCACATGCAGCCGTCCACTTCCTTGGGGCTTAGTTCCTCCCTGGACCCTTCTGTGTCTCTaGAGCGCGTCCAAACATGGC +
Preference number: 4 (lower is better)
Translates to: LRVSTCSRPLPWGLVPPWTLLCL*SASKHG
Trigger: GCCATGTTTGGACGCGCTCCAGAGACACAGAAGGGT...CCAGGGAGGAACTAAGCCCCAAGGAAGTGGACGGCTGCATGTGGAGACCCGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CTTCGGGTCTCCACATGCAGCCGTCCACTTCCTTGGGGCTTAGTTCCTCCCTGGTGGGGACCATTAGCCTaGAAACCCCTGGGAGGAAAG +
Preference number: 4 (lower is better)
Translates to: LRVSTCSRPLPWGLVPPWWGPLA*KPLGGK
Trigger: CTTTCCTCCCAGGGGTTTCCAGGCTAATGGTCCCCA...CCAGGGAGGAACTAAGCCCCAAGGAAGTGGACGGCTGCATGTGGAGACCCGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CTTCGGGTCTCCACATGCAGCCGTCCACTTCCTTGGGGCTTAGTTCCTCCCTGGCCACTTGGGCTTCTCTaGGAAGGGAGAGATCTCTGC +
Preference number: 4 (lower is better)
Translates to: LRVSTCSRPLPWGLVPPWPLGLL*EGRDLC
Trigger: GCAGAGATCTCTCCCTTCCCAGAGAAGCCCAAGTGG...CCAGGGAGGAACTAAGCCCCAAGGAAGTGGACGGCTGCATGTGGAGACCCGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTCCTGGGGGTCCACTTaGGCTTCTCTGGGAAGGGAG +
Preference number: 4 (lower is better)
Translates to: DDRTEMYNSHSSKSARPASWGST*ASLGRE
Trigger: CTCCCTTCCCAGAGAAGCCCAAGTGGACCCCCAGGA...GGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCAAAGCCTTGGCCATGTaGTGTGCCCACCTCTGGAGG +
Preference number: 4 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQAKALAM*CAHLWR
Trigger: CCTCCAGAGGTGGGCACATCACATGGCCAAGGCTTT...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100993.9
CDS-3UTR TCA 90 bp GACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCAAGGCCCTTCCCCTCTaGCCTACAGGGAGATGCTTC +
Preference number: 4 (lower is better)
Translates to: DDRTEMYNSHSSKSARPAKALPL*PTGRCF
Trigger: GAAGCATCTCCCTGTAGGTCAGAGGGGAAGGGCCTT...GGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp CTTCGGGTCTCCACATGCAGCCGTCCACTTCCTTGGGGCTTAGTTCCTCCCTGGCACAGGGGATGGGTATaGCCTGGGCTGAAAATGACT +
Preference number: 4 (lower is better)
Translates to: LRVSTCSRPLPWGLVPPWHRGWV*PGLKMT
Trigger: AGTCATTTTCAGCCCAGGGCATACCCATCCCCTGTG...CCAGGGAGGAACTAAGCCCCAAGGAAGTGGACGGCTGCATGTGGAGACCCGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTTCGGGTCTCCGCTGCTGGCCTCATCTaGTTTAAAGGGGGTGCGTGG +
Preference number: 4 (lower is better)
Translates to: RDVQQSFLQVRQACLRVSAAGLI*FKGGAW
Trigger: CCACGCACCCCCTTTAAACCAGATGAGGCCAGCAGC...GGAGACCCGAAGGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100993.9
CDS-3UTR CCA 90 bp GACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCGTGGGGCTTCTCATCTaGCCCCAAACGTCCAGGGTT +
Preference number: 4 (lower is better)
Translates to: DDRTEMYNSHSSKSARPAVGLLI*PQTSRV
Trigger: AACCCTGGACGTTTGGGGCCAGATGAGAAGCCCCAC...GGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCCAGGGCTGTCCATCATaGATTCCCCTCCTTGTGCCC +
Preference number: 4 (lower is better)
Translates to: DDRTEMYNSHSSKSARPAQGCPS*IPLLVP
Trigger: GGGCACAAGGAGGGGAATCCATGATGGACAGCCCTG...GGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GAAGGCTTGATTCACAGTGAAGAGGTGGAGCAGGACGACAGGACAGAGATGTACGGATGGGGAGGTGGATaGGCAGGCACAGGGGATGGG +
Preference number: 4 (lower is better)
Translates to: EGLIHSEEVEQDDRTEMYGWGGG*AGTGDG
Trigger: CCCATCCCCTGTGCCTGCCCATCCACCTCCCCATCC...GTACATCTCTGTCCTGTCGTCCTGCTCCACCTCTTCACTGTGAATCAAGCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GGTGGAGCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCTTGCAAGGGCTCTCCTaGGGGAGCCTCTGGGATTCT +
Preference number: 4 (lower is better)
Translates to: GGAGRQDRDVQQSFLQVRLQGLS*GSLWDS
Trigger: AGAATCCCAGAGGCTCCCCCAGGAGAGCCCTTGCAA...GCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGCTCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GAAGGCTTGATTCACAGTGAAGAGGTGGAGCAGGACGACAGGACAGAGATGTACGGGTTGGGTGGCTACTaGATGGGGAGGTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: EGLIHSEEVEQDDRTEMYGLGGY*MGRWMG
Trigger: GCCCATCCACCTCCCCATCCAGTAGCCACCCAACCC...GTACATCTCTGTCCTGTCGTCCTGCTCCACCTCTTCACTGTGAATCAAGCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCCTGGAGAGAGGCCATTaGGTTGGGTGGCTACTGGAT +
Preference number: 4 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQALERGH*VGWLLD
Trigger: ATCCAGTAGCCACCCAACCCAATGGCCTCTCTCCAG...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTACTCTGATCGTCCCCTaGGGAGGCAGCTCGGCGTGC +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSTLIVP*GGSSAC
Trigger: GCACGCCGAGCTGCCTCCTCAGGGGACGATCAGAGT...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCAAGGGAGGTGCTGGGTaGGGTAGCTGTTTGAGGTAT +
Preference number: 4 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQAKGGAG*GSCLRY
Trigger: ATACCTCAAACAGCTACCTCACCCAGCACCTCCCTT...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp GAAGGCTTGATTCACAGTGAAGAGGTGGAGCAGGACGACAGGACAGAGATGTACAAGAGCGAGCAGAAGTaGGCGATGGCCGGGACTTCC +
Preference number: 4 (lower is better)
Translates to: EGLIHSEEVEQDDRTEMYKSEQK*AMAGTS
Trigger: GGAAGTCCCGGCCATCGCGCACTTCTGCTCGCTCTT...GTACATCTCTGTCCTGTCGTCCTGCTCCACCTCTTCACTGTGAATCAAGCCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp GAAGGCTTGATTCACAGTGAAGAGGTGGAGCAGGACGACAGGACAGAGATGTACGCAAAGGGTGGGTGTTaGAAGGGCTCTCCTGGGGGA +
Preference number: 4 (lower is better)
Translates to: EGLIHSEEVEQDDRTEMYAKGGC*KGSPGG
Trigger: TCCCCCAGGAGAGCCCTTGCAACACCCACCCTTTGC...GTACATCTCTGTCCTGTCGTCCTGCTCCACCTCTTCACTGTGAATCAAGCCTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp AGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTTCGGGTCTCCCACAGGGGATGGGTATaGCCTGGGCTGAAAATGACT +
Preference number: 4 (lower is better)
Translates to: RDVQQSFLQVRQACLRVSHRGWV*PGLKMT
Trigger: AGTCATTTTCAGCCCAGGGCATACCCATCCCCTGTG...GGAGACCCGAAGGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCCCTATGTTGCAACTCTaGCTTTGTGCGCTGTGGACG +
Preference number: 4 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQAPMLQL*LCALWT
Trigger: CGTCCACAGCGCACAAAGCCAGAGTTGCAACATAGG...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTGTGGTGAGAGGGTCCTaGCCCCAGGTGGGGCTTCTC +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSVVRGS*PQVGLL
Trigger: GAGAAGCCCCACCTGGGGCCAGGACCCTCTCACCAC...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTGTGGTGAGAGGGTCCTaGCCCCAGGTGGGGCTTCTC +
Preference number: 4 (lower is better)
Translates to: FVSCADDPSYRPASHLKSVVRGS*PQVGLL
Trigger: GAGAAGCCCCACCTGGGGCCAGGACCCTCTCACCAC...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CTTCGGGTCTCCACATGCAGCCGTCCACTTCCTTGGGGCTTAGTTCCTCCCTGGAGTCCACTGGTTTGGTaGGATAGGTTGTCTCATCAC +
Preference number: 4 (lower is better)
Translates to: LRVSTCSRPLPWGLVPPWSPLVW*DRLSHH
Trigger: GTGATGAGACAACCTATCCCACCAAACCAGTGGACT...CCAGGGAGGAACTAAGCCCCAAGGAAGTGGACGGCTGCATGTGGAGACCCGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GGAAGGTCTAAGCCAGGTCCTAAGGCTCTAAGGAGTTCAGTGTGCTCAAACAGAAAGGGACCAGGTAACTaGGGAGGAGTGGGCTGGCGG +
Preference number: 4 (lower is better)
Translates to: GRSKPGPKALRSSVCSNRKGPGN*GGVGWR
Trigger: CCGCCAGCCCACTCCTCCCCAGTTACCTGGTCCCTT...TCTGTTTGAGCACACTGAACTCCTTAGAGCCTTAGGACCTGGCTTAGACCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GGTGGAGCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCTGGAGAGAGGCCATTaGGTTGGGTGGCTACTGGAT +
Preference number: 4 (lower is better)
Translates to: GGAGRQDRDVQQSFLQVRLERGH*VGWLLD
Trigger: ATCCAGTAGCCACCCAACCCAATGGCCTCTCTCCAG...GCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGCTCCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTTCGGGTCTCCGTAGAGGGAATCCTCTaGAGAGAGGCCATTGGGTTG +
Preference number: 4 (lower is better)
Translates to: RDVQQSFLQVRQACLRVSVEGIL*REAIGL
Trigger: CAACCCAATGGCCTCTCTCCAGAGGATTCCCTCTAC...GGAGACCCGAAGGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp AGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTTCGGGTCTCCGATCTTCCACTGCCTTaGCCTTTTCCTCCATTTCCC +
Preference number: 4 (lower is better)
Translates to: RDVQQSFLQVRQACLRVSDLPLP*PFPPFP
Trigger: GGGAAATGGAGGAAAAGGTCAAGGCAGTGGAAGATC...GGAGACCCGAAGGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp GACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCGATCTTCCACTGCCTTaGCCTTTTCCTCCATTTCCC +
Preference number: 4 (lower is better)
Translates to: DDRTEMYNSHSSKSARPADLPLP*PFPPFP
Trigger: GGGAAATGGAGGAAAAGGTCAAGGCAGTGGAAGATC...GGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp AGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTTCGGGTCTCCGAGGTATACCCCCTCTaGAGAACAAATGCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: RDVQQSFLQVRQACLRVSEVYPL*RTNACC
Trigger: GCAGCAAGCATTTGTTCTTCAGAGGGGGTATACCTC...GGAGACCCGAAGGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp GCTGCCCACATTCCAGAAATCCTCCAGACTGAACACTCACTGATACACTCTTGTAGGGAGCGTGGAGGGTaGCTTCCTGGGGGTCCACTT +
Preference number: 4 (lower is better)
Translates to: AAHIPEILQTEHSLIHSCRERGG*LPGGPL
Trigger: AAGTGGACCCCCAGGAAGTCACCCTCCACGCTCCCT...ACAAGAGTGTATCAGTGAGTGTTCAGTCTGGAGGATTTCTGGAATGTGGGCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp AGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTTCGGGTCTCCCTGGTTCACAGTGGCTaGCATCAAACTGGGATCTGT +
Preference number: 4 (lower is better)
Translates to: RDVQQSFLQVRQACLRVSLVHSG*HQTGIC
Trigger: ACAGATCCCAGTTTGATGGCAGCCACTGTGAACCAG...GGAGACCCGAAGGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCCTGGTTCACAGTGGCTaGCATCAAACTGGGATCTGT +
Preference number: 4 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQALVHSG*HQTGIC
Trigger: ACAGATCCCAGTTTGATGGCAGCCACTGTGAACCAG...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp AGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTTCGGGTCTCCTGCACTGGATGCATCTaGAATCCTGGTGGTCTGTGT +
Preference number: 4 (lower is better)
Translates to: RDVQQSFLQVRQACLRVSCTGCI*NPGGLC
Trigger: ACACAGACCACCAGGATTGCAGATGCATCCAGTGCA...GGAGACCCGAAGGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GAAGGCTTGATTCACAGTGAAGAGGTGGAGCAGGACGACAGGACAGAGATGTACTCCTGGGGGAGCCTCTaGGATTCTAGAGGAGCCATG +
Preference number: 4 (lower is better)
Translates to: EGLIHSEEVEQDDRTEMYSWGSL*DSRGAM
Trigger: CATGGCTCCTCTAGAATCCCAGAGGCTCCCCCAGGA...GTACATCTCTGTCCTGTCGTCCTGCTCCACCTCTTCACTGTGAATCAAGCCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATGCTTTCAGGAAAGTCTaGGGGTCGGGCTGGAGTCCC +
Preference number: 4 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHAFRKV*GSGWSP
Trigger: GGGACTCCAGCCCGACCCCCAGACTTTCCTGAAAGC...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GGTGGAGCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCTCTGAATCGAGGACTTaGTGCTGGAGTTGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: GGAGRQDRDVQQSFLQVRSESRT*CWSWRW
Trigger: CCACCTCCAACTCCAGCACCAAGTCCTCGATTCAGA...GCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGCTCCACC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTTCGGGTCTCCAGGAGAGCTGCTGCATaGCAATCATTTCAGGGCTGT +
Preference number: 4 (lower is better)
Translates to: RDVQQSFLQVRQACLRVSRRAAA*QSFQGC
Trigger: ACAGCCCTGAAATGATTGCCATGCAGCAGCTCTCCT...GGAGACCCGAAGGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATGTGGTAAGGCACACCTaGGGGACAGACTCGGGAGGA +
Preference number: 4 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHVVRHT*GTDSGG
Trigger: TCCTCCCGAGTCTGTCCCCCAGGTGTGCCTTACCAC...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCAGCATCACACTGTaGGGTGGGAAAGCAGATGAA +
Preference number: 4 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQACSITL*GGKADE
Trigger: TTCATCTGCTTTCCCACCCCACAGTGTGATGCTGCA...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp ACTTTGAACTCAGAGGTCTTTCTGCCTCTGCCTGCTGGAATTAAAGGCCTGTGCTACTGGATGGGGAGGTaGATGGGCAGGCACAGGGGA +
Preference number: 4 (lower is better)
Translates to: TLNSEVFLPLPAGIKGLCYWMGR*MGRHRG
Trigger: TCCCCTGTGCCTGCCCATCCACCTCCCCATCCAGTA...GCACAGGCCTTTAATTCCAGCAGGCAGAGGCAGAAAGACCTCTGAGTTCAAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTTGGGTGGCTACTGGATaGGGAGGTGGATGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: FVSCADDPSYRPASHLKSWVATG*GGGWAG
Trigger: GCCTGCCCATCCACCTCCCCATCCAGTAGCCACCCA...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCGAGGAAGGAACTCCATaGGGTAGAAAGCTTGACTGT +
Preference number: 4 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQAEEGTP*GRKLDC
Trigger: ACAGTCAAGCTTTCTACCTCATGGAGTTCCTTCCTC...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp AGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTTCGGGTCTCCGCCTTTCACTTTCCCTaGACAAGGAGAGTTCTCCAT +
Preference number: 4 (lower is better)
Translates to: RDVQQSFLQVRQACLRVSAFHFP*TRRVLH
Trigger: ATGGAGAACTCTCCTTGTGCAGGGAAAGTGAAAGGC...GGAGACCCGAAGGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp GACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCAGAAGGAATAAATCCTaGCTGGAATGGAGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: DDRTEMYNSHSSKSARPARRNKS*LEWSWW
Trigger: CCACCAGCTCCATTCCAGGCAGGATTTATTCCTTCT...GGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCGCTGGAGTCCCACCATaGCTAGAAGGAATAAATCCT +
Preference number: 4 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQAAGVPP*LEGINP
Trigger: AGGATTTATTCCTTCTAGGCATGGTGGGACTCCAGC...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTTCCAGGCAAAGGCTCTaGTGGGTCTTCCTCGGGCTC +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSSRQRL*WVFLGL
Trigger: GAGCCCGAGGAAGACCCAGCAGAGCCTTTGCCTGGA...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp GCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTCCAGGCAAAGGCTCTaGTGGGTCTTCCTCGGGCTC +
Preference number: 4 (lower is better)
Translates to: AHESLKAPLQPYMYPPPKSRQRL*WVFLGL
Trigger: GAGCCCGAGGAAGACCCAGCAGAGCCTTTGCCTGGA...CTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCGAAGGGAGAGATCTCTaGCAATCAGAAAAGCCCTGT +
Preference number: 4 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQAEGRDL*QSEKPC
Trigger: ACAGGGCTTTTCTGATTGGCAGAGATCTCTCCCTTC...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp ACTTTGAACTCAGAGGTCTTTCTGCCTCTGCCTGCTGGAATTAAAGGCCTGTGCTCCTGGGGGAGCCTCTaGGATTCTAGAGGAGCCATG +
Preference number: 4 (lower is better)
Translates to: TLNSEVFLPLPAGIKGLCSWGSL*DSRGAM
Trigger: CATGGCTCCTCTAGAATCCCAGAGGCTCCCCCAGGA...GCACAGGCCTTTAATTCCAGCAGGCAGAGGCAGAAAGACCTCTGAGTTCAAAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTGGAATGGAGCTaGTGGATACATGTTTCCATC +
Preference number: 4 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQACLEWS*WIHVSI
Trigger: GATGGAAACATGTATCCACCAGCTCCATTCCAGGCA...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTGCTTTCAGGAAAGTCTaGGGGTCGGGCTGGAGTCCC +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSAFRKV*GSGWSP
Trigger: GGGACTCCAGCCCGACCCCCAGACTTTCCTGAAAGC...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TTAGCTGCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCAGGATGGGGAGGTGGATaGGCAGGCACAGGGGATGGG +
Preference number: 4 (lower is better)
Translates to: LAAHESLKAPLQPYMYPPGWGGG*AGTGDG
Trigger: CCCATCCCCTGTGCCTGCCCATCCACCTCCCCATCC...TGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR CAA 72 bp CCAGCAAGAACTCCAGGTCCATTGCTCTGGCTAAGTTaGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAG +
Preference number: 4 (lower is better)
Translates to: PARTPGPLLWLS*SAVQMIPAIGQ
Trigger: CTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAACTTAGCCAGAGCAATGGACCTGGAGTTCTTGCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp GAAGGCTTGATTCACAGTGAAGAGGTGGAGCAGGACGACAGGACAGAGATGTACCAGGACATTCTTCTCTaGAAAGAGGGAGCGTGGAGG +
Preference number: 4 (lower is better)
Translates to: EGLIHSEEVEQDDRTEMYQDILL*KEGAWR
Trigger: CCTCCACGCTCCCTCTTTTCAGAGAAGAATGTCCTG...GTACATCTCTGTCCTGTCGTCCTGCTCCACCTCTTCACTGTGAATCAAGCCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp GGTGGAGCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCAACTCTGAGACTGTCTaGATCCAGACCCTTGAGAAG +
Preference number: 4 (lower is better)
Translates to: GGAGRQDRDVQQSFLQVRNSETV*IQTLEK
Trigger: CTTCTCAAGGGTCTGGATGCAGACAGTCTCAGAGTT...GCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGCTCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp GGAAGGTCTAAGCCAGGTCCTAAGGCTCTAAGGAGTTCAGTGTGCTCAAACAGAGGAGTTGGAGGTGGCTaGAAACGATGTCCAGCAGAC +
Preference number: 4 (lower is better)
Translates to: GRSKPGPKALRSSVCSNRGVGGG*KRCPAD
Trigger: GTCTGCTGGACATCGTTTGCAGCCACCTCCAACTCC...TCTGTTTGAGCACACTGAACTCCTTAGAGCCTTAGGACCTGGCTTAGACCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTGCCAAATGTTCCTGGTaGTGCTGGCCTCTCTGGAGG +
Preference number: 4 (lower is better)
Translates to: FVSCADDPSYRPASHLKSAKCSW*CWPLWR
Trigger: CCTCCAGAGAGGCCAGCAGCACCAGGAACATTTGGC...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTTCGGGTCTCCCTGGAATGGAGCTGGTaGATACATGTTTCCATCTTG +
Preference number: 4 (lower is better)
Translates to: RDVQQSFLQVRQACLRVSLEWSW*IHVSIL
Trigger: CAAGATGGAAACATGTATCCACCAGCTCCATTCCAG...GGAGACCCGAAGGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGGTGGGGCTTCTCATCTaGCCCCAAACGTCCAGGGTT +
Preference number: 4 (lower is better)
Translates to: AHESLKAPLQPYMYPPPKVGLLI*PQTSRV
Trigger: AACCCTGGACGTTTGGGGCCAGATGAGAAGCCCCAC...CTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GGTGGAGCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCAGTCCACTGGTTTGGTaGGATAGGTTGTCTCATCAC +
Preference number: 4 (lower is better)
Translates to: GGAGRQDRDVQQSFLQVRSPLVW*DRLSHH
Trigger: GTGATGAGACAACCTATCCCACCAAACCAGTGGACT...GCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGCTCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGCAGGGCTGTCCATCATaGATTCCCCTCCTTGTGCCC +
Preference number: 4 (lower is better)
Translates to: AHESLKAPLQPYMYPPPKQGCPS*IPLLVP
Trigger: GGGCACAAGGAGGGGAATCCATGATGGACAGCCCTG...CTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTTCGGGTCTCCAAAACTGGTTCACAGTaGCTGCCATCAAACTGGGAT +
Preference number: 4 (lower is better)
Translates to: RDVQQSFLQVRQACLRVSKTGSQ*LPSNWD
Trigger: ATCCCAGTTTGATGGCAGCCACTGTGAACCAGTTTT...GGAGACCCGAAGGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GGAAGGTCTAAGCCAGGTCCTAAGGCTCTAAGGAGTTCAGTGTGCTCAAACAGATGGGGACCATTAGCCTaGAAACCCCTGGGAGGAAAG +
Preference number: 4 (lower is better)
Translates to: GRSKPGPKALRSSVCSNRWGPLA*KPLGGK
Trigger: CTTTCCTCCCAGGGGTTTCCAGGCTAATGGTCCCCA...TCTGTTTGAGCACACTGAACTCCTTAGAGCCTTAGGACCTGGCTTAGACCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTTGTTCCTGGTGCTGCTaGCCTCTCTGGAGGGAGTTG +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSCSWCC*PLWREL
Trigger: CAACTCCCTCCAGAGAGGCCAGCAGCACCAGGAACA...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp AGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTTCGGGTCTCCGTTTTTCTATCTTGGTaGGCATGGGAGTTTCCTCTA +
Preference number: 4 (lower is better)
Translates to: RDVQQSFLQVRQACLRVSVFLSW*AWEFPL
Trigger: TAGAGGAAACTCCCATGCTCACCAAGATAGAAAAAC...GGAGACCCGAAGGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATGGCCAGGAATCCTTGTaGGCCTTCACCACATCTAGA +
Preference number: 4 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHGQESL*AFTTSR
Trigger: TCTAGATGTGGTGAAGGCTCACAAGGATTCCTGGCC...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp CTTCGGGTCTCCACATGCAGCCGTCCACTTCCTTGGGGCTTAGTTCCTCCCTGGATTTTCGGCAATTTCTaGACATGGTCTTCATGTCAT +
Preference number: 4 (lower is better)
Translates to: LRVSTCSRPLPWGLVPPWIFGNF*TWSSCH
Trigger: ATGACATGAAGACCATGTTCAGAAATTGCCGAAAAT...CCAGGGAGGAACTAAGCCCCAAGGAAGTGGACGGCTGCATGTGGAGACCCGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATGGTGAGGTAGCTGTTTaGGGTATACCCCCTCTGAAG +
Preference number: 4 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHGEVAV*GIPPLK
Trigger: CTTCAGAGGGGGTATACCTCAAACAGCTACCTCACC...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp GAAGGCTTGATTCACAGTGAAGAGGTGGAGCAGGACGACAGGACAGAGATGTACTTCCCTTTCTTGTGGTaGGCTTTGCCTGGTACAGCT +
Preference number: 4 (lower is better)
Translates to: EGLIHSEEVEQDDRTEMYFPFLW*ALPGTA
Trigger: AGCTGTACCAGGCAAAGCTCACCACAAGAAAGGGAA...GTACATCTCTGTCCTGTCGTCCTGCTCCACCTCTTCACTGTGAATCAAGCCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp ACTTTGAACTCAGAGGTCTTTCTGCCTCTGCCTGCTGGAATTAAAGGCCTGTGCGCAGAGTGGCTTTTCTaGACCACTACCATCAAGGCC +
Preference number: 4 (lower is better)
Translates to: TLNSEVFLPLPAGIKGLCAEWLF*TTTIKA
Trigger: GGCCTTGATGGTAGTGGTTCAGAAAAGCCACTCTGC...GCACAGGCCTTTAATTCCAGCAGGCAGAGGCAGAAAGACCTCTGAGTTCAAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTCTGGGAGGAAAGGACTaGGGTTGTGATCCTGAGGAC +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSLGGKD*GCDPED
Trigger: GTCCTCAGGATCACAACCTCAGTCCTTTCCTCCCAG...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCGTCACTACATCCATTTaGGTTGGAGAAGTTAAGGCA +
Preference number: 4 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQAVTTSI*VGEVKA
Trigger: TGCCTTAACTTCTCCAACTCAAATGGATGTAGTGAC...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp AAACTAACTATTGAGGTAATTGTCGCTCTCAGTGAAACAGCAGGGAACCAGCAGGCAAAGGGTGGGTGTTaGAAGGGCTCTCCTGGGGGA +
Preference number: 4 (lower is better)
Translates to: KLTIEVIVALSETAGNQQAKGGC*KGSPGG
Trigger: TCCCCCAGGAGAGCCCTTGCAACACCCACCCTTTGC...CTGCTGGTTCCCTGCTGTTTCACTGAGAGCGACAATTACCTCAATAGTTAGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTGAATCGAGGACTTGGTaGTGGAGTTGGAGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: FVSCADDPSYRPASHLKSESRTW*WSWRWL
Trigger: CAGCCACCTCCAACTCCAGCACCAAGTCCTCGATTC...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTCTTGTGGTGAGCTTTaGCTGGTACAGCTGGCTTGC +
Preference number: 4 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHSCGEL*LVQLAC
Trigger: GCAAGCCAGCTGTACCAGGCAAAGCTCACCACAAGA...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp ACTTTGAACTCAGAGGTCTTTCTGCCTCTGCCTGCTGGAATTAAAGGCCTGTGCTATGGAGACCCTGTCTaGAGCATCACACTGTGGGGT +
Preference number: 4 (lower is better)
Translates to: TLNSEVFLPLPAGIKGLCYGDPV*SITLWG
Trigger: ACCCCACAGTGTGATGCTGCAGACAGGGTCTCCATA...GCACAGGCCTTTAATTCCAGCAGGCAGAGGCAGAAAGACCTCTGAGTTCAAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CAACCATACAGCAAACAAATGTCATTGGACAATAACACCATGGCCAGTCAAGAGAGCAGAAGTGCGCGATaGCCGGGACTTCCCACCAGG +
Preference number: 4 (lower is better)
Translates to: QPYSKQMSLDNNTMASQESRSAR*PGLPTR
Trigger: CCTGGTGGGAAGTCCCGGCCATCGCGCACTTCTGCT...CTCTTGACTGGCCATGGTGTTATTGTCCAATGACATTTGTTTGCTGTATGGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCGGACGTTTTCCCTTCTaGGCAATCATGTTGCAAATT +
Preference number: 4 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQAGRFPF*AIMLQI
Trigger: AATTTGCAACATGATTGCCCAGAAGGGAAAACGTCC...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTTGGCTTTGTGCGCTGTaGACGTTTTCCCTTCTGGGC +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSWLCAL*TFSLLG
Trigger: GCCCAGAAGGGAAAACGTCCACAGCGCACAAAGCCA...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTTGGCTTTGTGCGCTGTaGACGTTTTCCCTTCTGGGC +
Preference number: 4 (lower is better)
Translates to: FVSCADDPSYRPASHLKSWLCAL*TFSLLG
Trigger: GCCCAGAAGGGAAAACGTCCACAGCGCACAAAGCCA...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTTCCCCCATTCTCCACTaGTGGCTGTTTCCTGCTCGA +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSSPILH*WLFPAR
Trigger: TCGAGCAGGAAACAGCCACCAGTGGAGAATGGGGGA...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GCTGCCCACATTCCAGAAATCCTCCAGACTGAACACTCACTGATACACTCTTGTTCCCCCATTCTCCACTaGTGGCTGTTTCCTGCTCGA +
Preference number: 4 (lower is better)
Translates to: AAHIPEILQTEHSLIHSCSPILH*WLFPAR
Trigger: TCGAGCAGGAAACAGCCACCAGTGGAGAATGGGGGA...ACAAGAGTGTATCAGTGAGTGTTCAGTCTGGAGGATTTCTGGAATGTGGGCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTTTAGTCCACTGGTTTaGTGGGATAGGTTGTCTCAT +
Preference number: 4 (lower is better)
Translates to: DDRTEMYNSHSSKSARPAFSPLV*WDRLSH
Trigger: ATGAGACAACCTATCCCACCAAACCAGTGGACTAAA...GGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTTCGAGGACTTGGTGCTaGAGTTGGAGGTGGCTGCAA +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSSRTWC*SWRWLQ
Trigger: TTGCAGCCACCTCCAACTCCAGCACCAAGTCCTCGA...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTCGAGGACTTGGTGCTaGAGTTGGAGGTGGCTGCAA +
Preference number: 4 (lower is better)
Translates to: AHESLKAPLQPYMYPPPKSRTWC*SWRWLQ
Trigger: TTGCAGCCACCTCCAACTCCAGCACCAAGTCCTCGA...CTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TTAGCTGCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCAGTGGTAAGGCACACCTaGGGGACAGACTCGGGAGGA +
Preference number: 4 (lower is better)
Translates to: LAAHESLKAPLQPYMYPPVVRHT*GTDSGG
Trigger: TCCTCCCGAGTCTGTCCCCCAGGTGTGCCTTACCAC...TGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATACAGCCTTGCACAGCTaGGCTGCTGTAGCTATTGTC +
Preference number: 4 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHTALHS*AAVAIV
Trigger: GACAATAGCTACAGCAGCCCAGCTGTGCAAGGCTGT...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GGTGGAGCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCGATCTAGAAATTCTTTaGGACTCTCTGGCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: GGAGRQDRDVQQSFLQVRDLEIL*DSLASP
Trigger: TGGAGAGGCCAGAGAGTCCCAAAGAATTTCTAGATC...GCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGCTCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CTTCGGGTCTCCACATGCAGCCGTCCACTTCCTTGGGGCTTAGTTCCTCCCTGGTTGGTAGCTGCATTATaGTTGTCGAGATCTAGAAAT +
Preference number: 4 (lower is better)
Translates to: LRVSTCSRPLPWGLVPPWLVAAL*LSRSRN
Trigger: ATTTCTAGATCTCGACAACCATAATGCAGCTACCAA...CCAGGGAGGAACTAAGCCCCAAGGAAGTGGACGGCTGCATGTGGAGACCCGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AAACTAACTATTGAGGTAATTGTCGCTCTCAGTGAAACAGCAGGGAACCAGCAGGGCAGGCACAGGGGATaGGTATGCCCTGGGCTGAAA +
Preference number: 4 (lower is better)
Translates to: KLTIEVIVALSETAGNQQGRHRG*VCPGLK
Trigger: TTTCAGCCCAGGGCATACCCATCCCCTGTGCCTGCC...CTGCTGGTTCCCTGCTGTTTCACTGAGAGCGACAATTACCTCAATAGTTAGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp GCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGCCAGTAGAGTGCACCTaGATTGTCTTCACCCAGAGG +
Preference number: 4 (lower is better)
Translates to: AHESLKAPLQPYMYPPPKPVECT*IVFTQR
Trigger: CCTCTGGGTGAAGACAATTCAGGTGCACTCTACTGG...CTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTGCAGAGTGGCTTTTCTaGACCACTACCATCAAGGCC +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSAEWLF*TTTIKA
Trigger: GGCCTTGATGGTAGTGGTTCAGAAAAGCCACTCTGC...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTCATGGCACGGCTTCTTaGAATGTTTTACCCCTGGGG +
Preference number: 4 (lower is better)
Translates to: FVSCADDPSYRPASHLKSHGTAS*NVLPLG
Trigger: CCCCAGGGGTAAAACATTGCAAGAAGCCGTGCCATG...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTCCTATGTTGCAACTCTaGCTTTGTGCGCTGTGGACG +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSPMLQL*LCALWT
Trigger: CGTCCACAGCGCACAAAGCCAGAGTTGCAACATAGG...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GAAGGCTTGATTCACAGTGAAGAGGTGGAGCAGGACGACAGGACAGAGATGTACGAATTCAGGTCCAAATaGGAAAGTTCTGGGGGTAGC +
Preference number: 4 (lower is better)
Translates to: EGLIHSEEVEQDDRTEMYEFRSK*ESSGGS
Trigger: GCTACCCCCAGAACTTTCCCATTTGGACCTGAATTC...GTACATCTCTGTCCTGTCGTCCTGCTCCACCTCTTCACTGTGAATCAAGCCTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GGTGGAGCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCTTTAGTCCACTGGTTTaGTGGGATAGGTTGTCTCAT +
Preference number: 4 (lower is better)
Translates to: GGAGRQDRDVQQSFLQVRFSPLV*WDRLSH
Trigger: ATGAGACAACCTATCCCACCAAACCAGTGGACTAAA...GCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGCTCCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTGGAAAGAGTCCAGGGTaGGGACCATTAGCCTGGAAA +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSGKSPG*GPLAWK
Trigger: TTTCCAGGCTAATGGTCCCCACCCTGGACTCTTTCC...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR CAA 72 bp TGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATaGCTCTGGCTAAGTTTGTCAGCTGTGCAGATGATC +
Preference number: 4 (lower is better)
Translates to: WDLEKPARTPGP*LWLSLSAVQMI
Trigger: GATCATCTGCACAGCTGACAAACTTAGCCAGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
3UTR CAA 72 bp TCTCACTACTTAAGCTTTGGCCTGACCAAGCAGACTTaGAACTCAGAGGTCTTTCTGCCTCTGCCTGCTGGA +
Preference number: 4 (lower is better)
Translates to: SHYLSFGLTKQT*NSEVFLPLPAG
Trigger: TCCAGCAGGCAGAGGCAGAAAGACCTCTGAGTTCAAAGTCTGCTTGGTCAGGCCAAAGCTTAAGTAGTGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CAA 72 bp CCAAGACTGACACAGATCTTAGCACCAAGGCTAAGCTaGTGTTGGCCTACTGTGATTGGGCACGCAACTCAT +
Preference number: 4 (lower is better)
Translates to: PRLTQILAPRLS*CWPTVIGHATH
Trigger: ATGAGTTGCGTGCCCAATCACAGTAGGCCAACACAAGCTTAGCCTTGGTGCTAAGATCTGTGTCAGTCTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp GCTGCCCACATTCCAGAAATCCTCCAGACTGAACACTCACTGATACACTCTTGTGAGGTATACCCCCTCTaGAGAACAAATGCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: AAHIPEILQTEHSLIHSCEVYPL*RTNACC
Trigger: GCAGCAAGCATTTGTTCTTCAGAGGGGGTATACCTC...ACAAGAGTGTATCAGTGAGTGTTCAGTCTGGAGGATTTCTGGAATGTGGGCAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp GGTGGAGCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCGGTGTTCTTGTTCTTTaGTGTCTTATAAGTGTCTGC +
Preference number: 4 (lower is better)
Translates to: GGAGRQDRDVQQSFLQVRGVLVL*CLISVC
Trigger: GCAGACACTTATAAGACATCAAAGAACAAGAACACC...GCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGCTCCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp TTCTGTAAACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCGCAGGCGGAACGCCGTaGGAAAGAGCGAGCAGAAGT +
Preference number: 4 (lower is better)
Translates to: FCKLDPAPKTLILQVVPSAGGTP*ERASRS
Trigger: ACTTCTGCTCGCTCTTTCGCACGGCGTTCCGCCTGC...GGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGTTTACAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp ACTTTGAACTCAGAGGTCTTTCTGCCTCTGCCTGCTGGAATTAAAGGCCTGTGCGCTGGAGTCCCACCATaGCTAGAAGGAATAAATCCT +
Preference number: 4 (lower is better)
Translates to: TLNSEVFLPLPAGIKGLCAGVPP*LEGINP
Trigger: AGGATTTATTCCTTCTAGGCATGGTGGGACTCCAGC...GCACAGGCCTTTAATTCCAGCAGGCAGAGGCAGAAAGACCTCTGAGTTCAAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp GGTGGAGCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCCTCTGAAGAACAAATaGTTGCTGCTTTCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: GGAGRQDRDVQQSFLQVRPLKNK*LLLSLH
Trigger: ATGAAGAGAAAGCAGCAAGCATTTGTTCTTCAGAGG...GCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGCTCCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTCTGCCGCTTGGTAGCTaGATTATGGTTGTCGAGATC +
Preference number: 4 (lower is better)
Translates to: FVSCADDPSYRPASHLKSLPLGS*IMVVEI
Trigger: GATCTCGACAACCATAATGCAGCTACCAAGCGGCAG...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTTGCACTGGATGCATCTaGAATCCTGGTGGTCTGTGT +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSCTGCI*NPGGLC
Trigger: ACACAGACCACCAGGATTGCAGATGCATCCAGTGCA...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GGAAGGTCTAAGCCAGGTCCTAAGGCTCTAAGGAGTTCAGTGTGCTCAAACAGAAGGAGAGTTCTCCATTaGACCTTCCTTGTACTGGGT +
Preference number: 4 (lower is better)
Translates to: GRSKPGPKALRSSVCSNRRRVLH*TFLVLG
Trigger: ACCCAGTACAAGGAAGGTCCAATGGAGAACTCTCCT...TCTGTTTGAGCACACTGAACTCCTTAGAGCCTTAGGACCTGGCTTAGACCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTTTCCAAGTACCTTGGCCTaGCCCTCGGGATCCATTTCT +
Preference number: 4 (lower is better)
Translates to: HESLKAPLQPYMYPPPKFPSTLA*PSGSIS
Trigger: AGAAATGGATCCCGAGGGCCAGGCCAAGGTACTTGG...AAACTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GGTGGAGCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCGATTTGATGGACAGGTaGTCAGACATAAACCTATGT +
Preference number: 4 (lower is better)
Translates to: GGAGRQDRDVQQSFLQVRDLMDR*SDINLC
Trigger: ACATAGGTTTATGTCTGACCACCTGTCCATCAAATC...GCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGCTCCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCAATTGTCAGACATCTTaGTATACTCACTACTGTCAC +
Preference number: 4 (lower is better)
Translates to: DDRTEMYNSHSSKSARPANCQTS*YTHYCH
Trigger: GTGACAGTAGTGAGTATACCAAGATGTCTGACAATT...GGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GAAGGCTTGATTCACAGTGAAGAGGTGGAGCAGGACGACAGGACAGAGATGTACAGCCATGTAAGTTGGTaGGATCTGATCCTTGAAGAG +
Preference number: 4 (lower is better)
Translates to: EGLIHSEEVEQDDRTEMYSHVSW*DLILEE
Trigger: CTCTTCAAGGATCAGATCCCACCAACTTACATGGCT...GTACATCTCTGTCCTGTCGTCCTGCTCCACCTCTTCACTGTGAATCAAGCCTTC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCCTGGAATGGAGCTaGTGGATACATGTTTCCATC +
Preference number: 4 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHCLEWS*WIHVSI
Trigger: GATGGAAACATGTATCCACCAGCTCCATTCCAGGCA...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTTTGGGATGGGTATGCCCTaGGCTGAAAATGACTGGCTG +
Preference number: 4 (lower is better)
Translates to: HESLKAPLQPYMYPPPKFGMGMP*AENDWL
Trigger: CAGCCAGTCATTTTCAGCCCAGGGCATACCCATCCC...AAACTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTAGGGTTGGGTGGCTACTaGATGGGGAGGTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLGLGGY*MGRWMG
Trigger: GCCCATCCACCTCCCCATCCAGTAGCCACCCAACCC...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp AAACTAACTATTGAGGTAATTGTCGCTCTCAGTGAAACAGCAGGGAACCAGCAGTCCACGTCATCTCTGTaGAGAGCTGCCTCTAACTCC +
Preference number: 4 (lower is better)
Translates to: KLTIEVIVALSETAGNQQSTSSL*RAASNS
Trigger: GGAGTTAGAGGCAGCTCTTCACAGAGATGACGTGGA...CTGCTGGTTCCCTGCTGTTTCACTGAGAGCGACAATTACCTCAATAGTTAGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp CATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTTTGGCCAGGAATCCTTGTaGGCCTTCACCACATCTAGA +
Preference number: 4 (lower is better)
Translates to: HESLKAPLQPYMYPPPKFGQESL*AFTTSR
Trigger: TCTAGATGTGGTGAAGGCTCACAAGGATTCCTGGCC...AAACTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTGTGGGATCTGATCCTTaGAGAGAGCCAAATGTTCCT +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSVGSDP*REPNVP
Trigger: AGGAACATTTGGCTCTCTTCAAGGATCAGATCCCAC...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp CATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTTTAAGGGAGGTGCTGGGTaGGGTAGCTGTTTGAGGTAT +
Preference number: 4 (lower is better)
Translates to: HESLKAPLQPYMYPPPKFKGGAG*GSCLRY
Trigger: ATACCTCAAACAGCTACCTCACCCAGCACCTCCCTT...AAACTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTAAAGAGCGAGCAGAAGTaGGCGATGGCCGGGACTTCC +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLKSEQK*AMAGTS
Trigger: GGAAGTCCCGGCCATCGCGCACTTCTGCTCGCTCTT...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTTAATTTCTTCTCCATaGTTGAAATATCCATGGGGA +
Preference number: 4 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQALISSP*LKYPWG
Trigger: TCCCCATGGATATTTCAAGCATGGAGAAGAAATTAA...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp CAACCATACAGCAAACAAATGTCATTGGACAATAACACCATGGCCAGTCAAGAGGAATCGAGGACTTGGTaGTGGAGTTGGAGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: QPYSKQMSLDNNTMASQEESRTW*WSWRWL
Trigger: CAGCCACCTCCAACTCCAGCACCAAGTCCTCGATTC...CTCTTGACTGGCCATGGTGTTATTGTCCAATGACATTTGTTTGCTGTATGGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp AAACTAACTATTGAGGTAATTGTCGCTCTCAGTGAAACAGCAGGGAACCAGCAGCATGGCACGGCTTCTTaGAATGTTTTACCCCTGGGG +
Preference number: 4 (lower is better)
Translates to: KLTIEVIVALSETAGNQQHGTAS*NVLPLG
Trigger: CCCCAGGGGTAAAACATTGCAAGAAGCCGTGCCATG...CTGCTGGTTCCCTGCTGTTTCACTGAGAGCGACAATTACCTCAATAGTTAGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATATAGAGGCCAAACCTTaGAAACTTGGACTCATAGGG +
Preference number: 4 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHIEAKP*KLGLIG
Trigger: CCCTATGAGTCCAAGTTTGCAAGGTTTGGCCTCTAT...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTGTTGACAGTGAGTTCTaGCGCTTGGTAGCTGCATTA +
Preference number: 4 (lower is better)
Translates to: FVSCADDPSYRPASHLKSVDSEF*RLVAAL
Trigger: TAATGCAGCTACCAAGCGGCAGAACTCACTGTCAAC...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGCGCAGAGGAAGGTCTTaGAAACTAGCTTCTCTCAGA +
Preference number: 4 (lower is better)
Translates to: AHESLKAPLQPYMYPPPKRRGRS*KLASLR
Trigger: TCTGAGAGAAGCTAGTTTCCAAGACCTTCCTCTGCG...CTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTAGGAGAGTTCTCCATTaGACCTTCCTTGTACTGGGT +
Preference number: 4 (lower is better)
Translates to: FVSCADDPSYRPASHLKSRRVLH*TFLVLG
Trigger: ACCCAGTACAAGGAAGGTCCAATGGAGAACTCTCCT...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATAGCCATGTAAGTTGGTaGGATCTGATCCTTGAAGAG +
Preference number: 4 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHSHVSW*DLILEE
Trigger: CTCTTCAAGGATCAGATCCCACCAACTTACATGGCT...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GGAAGGTCTAAGCCAGGTCCTAAGGCTCTAAGGAGTTCAGTGTGCTCAAACAGACTGGAATGGAGCTGGTaGATACATGTTTCCATCTTG +
Preference number: 4 (lower is better)
Translates to: GRSKPGPKALRSSVCSNRLEWSW*IHVSIL
Trigger: CAAGATGGAAACATGTATCCACCAGCTCCATTCCAG...TCTGTTTGAGCACACTGAACTCCTTAGAGCCTTAGGACCTGGCTTAGACCTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp ACTTTGAACTCAGAGGTCTTTCTGCCTCTGCCTGCTGGAATTAAAGGCCTGTGCAAAACTGGTTCACAGTaGCTGCCATCAAACTGGGAT +
Preference number: 4 (lower is better)
Translates to: TLNSEVFLPLPAGIKGLCKTGSQ*LPSNWD
Trigger: ATCCCAGTTTGATGGCAGCCACTGTGAACCAGTTTT...GCACAGGCCTTTAATTCCAGCAGGCAGAGGCAGAAAGACCTCTGAGTTCAAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTATCCTGGGGGTCCACTTaGGCTTCTCTGGGAAGGGAG +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLSWGST*ASLGRE
Trigger: CTCCCTTCCCAGAGAAGCCCAAGTGGACCCCCAGGA...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTTTCTTTGGGACTCTCTaGCCTCTCCACAGATTCATC +
Preference number: 4 (lower is better)
Translates to: FVSCADDPSYRPASHLKSFFGTL*PLHRFI
Trigger: GATGAATCTGTGGAGAGGCCAGAGAGTCCCAAAGAA...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GCTGCCCACATTCCAGAAATCCTCCAGACTGAACACTCACTGATACACTCTTGTTTCTTTGGGACTCTCTaGCCTCTCCACAGATTCATC +
Preference number: 4 (lower is better)
Translates to: AAHIPEILQTEHSLIHSCFFGTL*PLHRFI
Trigger: GATGAATCTGTGGAGAGGCCAGAGAGTCCCAAAGAA...ACAAGAGTGTATCAGTGAGTGTTCAGTCTGGAGGATTTCTGGAATGTGGGCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTTTTCGCTGAGGAGTGTATaGAGACCCTGTCTGCAGCAT +
Preference number: 4 (lower is better)
Translates to: HESLKAPLQPYMYPPPKFSLRSV*RPCLQH
Trigger: ATGCTGCAGACAGGGTCTCCATACACTCCTCAGCGA...AAACTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTAGGCAGGCACAGGGGATaGGTATGCCCTGGGCTGAAA +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLGRHRG*VCPGLK
Trigger: TTTCAGCCCAGGGCATACCCATCCCCTGTGCCTGCC...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTTTGTAGAGGGAATCCTCTaGAGAGAGGCCATTGGGTTG +
Preference number: 4 (lower is better)
Translates to: HESLKAPLQPYMYPPPKFVEGIL*REAIGL
Trigger: CAACCCAATGGCCTCTCTCCAGAGGATTCCCTCTAC...AAACTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATATGCATCTGCAATCCTaGTGGTCTGTGTACTTCTTG +
Preference number: 4 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHMHLQS*WSVYFL
Trigger: CAAGAAGTACACAGACCACCAGGATTGCAGATGCAT...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp TTAGCTGCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCATTCCCTTTCTTGTGGTaGGCTTTGCCTGGTACAGCT +
Preference number: 4 (lower is better)
Translates to: LAAHESLKAPLQPYMYPPFPFLW*ALPGTA
Trigger: AGCTGTACCAGGCAAAGCTCACCACAAGAAAGGGAA...TGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp GCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGAGTGTCTGCAGAGTCTaGAGCATCACTTTTGAGTTG +
Preference number: 4 (lower is better)
Translates to: AHESLKAPLQPYMYPPPKSVCRV*SITFEL
Trigger: CAACTCAAAAGTGATGCTTCAGACTCTGCAGACACT...CTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp CAACCATACAGCAAACAAATGTCATTGGACAATAACACCATGGCCAGTCAAGAGCAGGACATTCTTCTCTaGAAAGAGGGAGCGTGGAGG +
Preference number: 4 (lower is better)
Translates to: QPYSKQMSLDNNTMASQEQDILL*KEGAWR
Trigger: CCTCCACGCTCCCTCTTTTCAGAGAAGAATGTCCTG...CTCTTGACTGGCCATGGTGTTATTGTCCAATGACATTTGTTTGCTGTATGGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTTTTAACATCTGCTCTTaGTCCTTCTTCTGCACGGCA +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSFNICS*SFFCTA
Trigger: TGCCGTGCAGAAGAAGGAGCAAGAGCAGATGTTAAA...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp ACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCCAAATATCTTGGCCATGTGATGTaGCCACCTCTGGAGGGAGTT +
Preference number: 4 (lower is better)
Translates to: TGPSSKNINTTSSPFPKYLGHVM*PPLEGV
Trigger: AACTCCCTCCAGAGGTGGGCACATCACATGGCCAAG...ATATTTGGGGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100993.9
CDS-3UTR GCA 90 bp CATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTTTCTGCCGCTTGGTAGCTaGATTATGGTTGTCGAGATC +
Preference number: 4 (lower is better)
Translates to: HESLKAPLQPYMYPPPKFLPLGS*IMVVEI
Trigger: GATCTCGACAACCATAATGCAGCTACCAAGCGGCAG...AAACTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GGAAGGTCTAAGCCAGGTCCTAAGGCTCTAAGGAGTTCAGTGTGCTCAAACAGAGGACGTTTTCCCTTCTaGGCAATCATGTTGCAAATT +
Preference number: 4 (lower is better)
Translates to: GRSKPGPKALRSSVCSNRGRFPF*AIMLQI
Trigger: AATTTGCAACATGATTGCCCAGAAGGGAAAACGTCC...TCTGTTTGAGCACACTGAACTCCTTAGAGCCTTAGGACCTGGCTTAGACCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp ACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCCAAATATACCCTTCTGTGTCTCTaGAGCGCGTCCAAACATGGC +
Preference number: 4 (lower is better)
Translates to: TGPSSKNINTTSSPFPKYTLLCL*SASKHG
Trigger: GCCATGTTTGGACGCGCTCCAGAGACACAGAAGGGT...ATATTTGGGGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GCTGCCCACATTCCAGAAATCCTCCAGACTGAACACTCACTGATACACTCTTGTAAATCCTGCCTGGAATaGAGCTGGTGGATACATGTT +
Preference number: 4 (lower is better)
Translates to: AAHIPEILQTEHSLIHSCKSCLE*SWWIHV
Trigger: AACATGTATCCACCAGCTCCATTCCAGGCAGGATTT...ACAAGAGTGTATCAGTGAGTGTTCAGTCTGGAGGATTTCTGGAATGTGGGCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CAACCATACAGCAAACAAATGTCATTGGACAATAACACCATGGCCAGTCAAGAGTCTGAATCGAGGACTTaGTGCTGGAGTTGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: QPYSKQMSLDNNTMASQESESRT*CWSWRW
Trigger: CCACCTCCAACTCCAGCACCAAGTCCTCGATTCAGA...CTCTTGACTGGCCATGGTGTTATTGTCCAATGACATTTGTTTGCTGTATGGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTATGTCCAATGCAGGCTTaGGCGCCGACACACAGACTG +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLCPMQA*APTHRL
Trigger: CAGTCTGTGTGTCGGCGCCCAAGCCTGCATTGGACA...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp GCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTATAAGGGAGAAAACTaGTTCACAGTGGCTGCCATC +
Preference number: 4 (lower is better)
Translates to: AHESLKAPLQPYMYPPPKYKGEN*FTVAAI
Trigger: GATGGCAGCCACTGTGAACCAGTTTTCTCCCTTATA...CTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTTTTGCAGCATCACACTGTaGGGTGGGAAAGCAGATGAA +
Preference number: 4 (lower is better)
Translates to: HESLKAPLQPYMYPPPKFCSITL*GGKADE
Trigger: TTCATCTGCTTTCCCACCCCACAGTGTGATGCTGCA...AAACTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp ACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCCAAATATTCCACGTCATCTCTGTaGAGAGCTGCCTCTAACTCC +
Preference number: 4 (lower is better)
Translates to: TGPSSKNINTTSSPFPKYSTSSL*RAASNS
Trigger: GGAGTTAGAGGCAGCTCTTCACAGAGATGACGTGGA...ATATTTGGGGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp TTCTGTAAACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCGGTGAGGTAGCTGTTTaGGGTATACCCCCTCTGAAG +
Preference number: 4 (lower is better)
Translates to: FCKLDPAPKTLILQVVPSGEVAV*GIPPLK
Trigger: CTTCAGAGGGGGTATACCTCAAACAGCTACCTCACC...GGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGTTTACAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTACTGGGAGGAAAGGACTaGGGTTGTGATCCTGAGGAC +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLLGGKD*GCDPED
Trigger: GTCCTCAGGATCACAACCTCAGTCCTTTCCTCCCAG...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp CATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTTTGCCTTTCACTTTCCCTaGACAAGGAGAGTTCTCCAT +
Preference number: 4 (lower is better)
Translates to: HESLKAPLQPYMYPPPKFAFHFP*TRRVLH
Trigger: ATGGAGAACTCTCCTTGTGCAGGGAAAGTGAAAGGC...AAACTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTTCTGGGCAATCATGTTaGAAATTTCAGGCAGGAAGT +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSSGQSC*KFQAGS
Trigger: ACTTCCTGCCTGAAATTTGCAACATGATTGCCCAGA...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp TTCTGTAAACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCGCAACTCTGGCTTTGTaGGCTGTGGACGTTTTCCCT +
Preference number: 4 (lower is better)
Translates to: FCKLDPAPKTLILQVVPSATLAL*AVDVFP
Trigger: AGGGAAAACGTCCACAGCGCACAAAGCCAGAGTTGC...GGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGTTTACAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp TTAGCTGCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCAAGCTCGATCTTCCACTaGCTTGACCTTTTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: LAAHESLKAPLQPYMYPPSSIFH*LDLFLH
Trigger: ATGGAGGAAAAGGTCAAGGCAGTGGAAGATCGAGCT...TGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp CATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTTTAGCTCGATCTTCCACTaGCTTGACCTTTTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: HESLKAPLQPYMYPPPKFSSIFH*LDLFLH
Trigger: ATGGAGGAAAAGGTCAAGGCAGTGGAAGATCGAGCT...AAACTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp GCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGAGAACAAATGCTTGCTaGTTTCTCTTCATGTCCAGG +
Preference number: 4 (lower is better)
Translates to: AHESLKAPLQPYMYPPPKRTNAC*FLFMSR
Trigger: CCTGGACATGAAGAGAAAGCAGCAAGCATTTGTTCT...CTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp GGAAGGTCTAAGCCAGGTCCTAAGGCTCTAAGGAGTTCAGTGTGCTCAAACAGACCTCTGAAGAACAAATaGTTGCTGCTTTCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: GRSKPGPKALRSSVCSNRPLKNK*LLLSLH
Trigger: ATGAAGAGAAAGCAGCAAGCATTTGTTCTTCAGAGG...TCTGTTTGAGCACACTGAACTCCTTAGAGCCTTAGGACCTGGCTTAGACCTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp TTAGCTGCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCAGAAGGGAGAGATCTCTaGCAATCAGAAAAGCCCTGT +
Preference number: 4 (lower is better)
Translates to: LAAHESLKAPLQPYMYPPEGRDL*QSEKPC
Trigger: ACAGGGCTTTTCTGATTGGCAGAGATCTCTCCCTTC...TGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp TTCTGTAAACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCTATGGAGACCCTGTCTaGAGCATCACACTGTGGGGT +
Preference number: 4 (lower is better)
Translates to: FCKLDPAPKTLILQVVPSYGDPV*SITLWG
Trigger: ACCCCACAGTGTGATGCTGCAGACAGGGTCTCCATA...GGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGTTTACAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TTAGCTGCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACGCAGAGGAAGGTCTTaGAAACTAGCTTCTCTCAGA +
Preference number: 4 (lower is better)
Translates to: LAAHESLKAPLQPYMYPPRRGRS*KLASLR
Trigger: TCTGAGAGAAGCTAGTTTCCAAGACCTTCCTCTGCG...TGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTACCACTTGGGCTTCTCTaGGAAGGGAGAGATCTCTGC +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLPLGLL*EGRDLC
Trigger: GCAGAGATCTCTCCCTTCCCAGAGAAGCCCAAGTGG...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATCATCTTTTCTTCTTCTaGACCAGAATTGTGTCCATC +
Preference number: 4 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHHLFFF*TRIVSI
Trigger: GATGGACACAATTCTGGTCCAGAAGAAGAAAAGATG...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTAGGGATGGGTATGCCCTaGGCTGAAAATGACTGGCTG +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLGMGMP*AENDWL
Trigger: CAGCCAGTCATTTTCAGCCCAGGGCATACCCATCCC...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTTTTCTTCTCCATGCTTaGAATATCCATGGGGATCTT +
Preference number: 4 (lower is better)
Translates to: FVSCADDPSYRPASHLKSFLLHA*NIHGDL
Trigger: AAGATCCCCATGGATATTTCAAGCATGGAGAAGAAA...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTTTTCTTCTCCATGCTTaGAATATCCATGGGGATCTT +
Preference number: 4 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSFLLHA*NIHGDL
Trigger: AAGATCCCCATGGATATTTCAAGCATGGAGAAGAAA...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp CAACCATACAGCAAACAAATGTCATTGGACAATAACACCATGGCCAGTCAAGAGGTGGGATCTGATCCTTaGAGAGAGCCAAATGTTCCT +
Preference number: 4 (lower is better)
Translates to: QPYSKQMSLDNNTMASQEVGSDP*REPNVP
Trigger: AGGAACATTTGGCTCTCTTCAAGGATCAGATCCCAC...CTCTTGACTGGCCATGGTGTTATTGTCCAATGACATTTGTTTGCTGTATGGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTAGCCAAATGTTCCTGGTaGTGCTGGCCTCATCTGGTT +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLAKCSW*CWPHLV
Trigger: AACCAGATGAGGCCAGCAGCACCAGGAACATTTGGC...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100993.9
CDS-3UTR GCA 90 bp ACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCCAAATATACTCGGGAGGAGAGCTaGTGCATGGCAATCATTTCA +
Preference number: 4 (lower is better)
Translates to: TGPSSKNINTTSSPFPKYTREES*CMAIIS
Trigger: TGAAATGATTGCCATGCAGCAGCTCTCCTCCCGAGT...ATATTTGGGGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTATCTTGTGGTGAGCTTTaGCTGGTACAGCTGGCTTGC +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLSCGEL*LVQLAC
Trigger: GCAAGCCAGCTGTACCAGGCAAAGCTCACCACAAGA...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CAACCATACAGCAAACAAATGTCATTGGACAATAACACCATGGCCAGTCAAGAGGAATTCAGGTCCAAATaGGAAAGTTCTGGGGGTAGC +
Preference number: 4 (lower is better)
Translates to: QPYSKQMSLDNNTMASQEEFRSK*ESSGGS
Trigger: GCTACCCCCAGAACTTTCCCATTTGGACCTGAATTC...CTCTTGACTGGCCATGGTGTTATTGTCCAATGACATTTGTTTGCTGTATGGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp ACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCCAAATATAGGAGAGCTGCTGCATaGCAATCATTTCAGGGCTGT +
Preference number: 4 (lower is better)
Translates to: TGPSSKNINTTSSPFPKYRRAAA*QSFQGC
Trigger: ACAGCCCTGAAATGATTGCCATGCAGCAGCTCTCCT...ATATTTGGGGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TTAGCTGCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCATATAAGGGAGAAAACTaGTTCACAGTGGCTGCCATC +
Preference number: 4 (lower is better)
Translates to: LAAHESLKAPLQPYMYPPYKGEN*FTVAAI
Trigger: GATGGCAGCCACTGTGAACCAGTTTTCTCCCTTATA...TGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTAGGAAAGAGTCCAGGGTaGGGACCATTAGCCTGGAAA +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLGKSPG*GPLAWK
Trigger: TTTCCAGGCTAATGGTCCCCACCCTGGACTCTTTCC...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTCATCTTTTCTTCTTCTaGACCAGAATTGTGTCCATC +
Preference number: 4 (lower is better)
Translates to: FVSCADDPSYRPASHLKSHLFFF*TRIVSI
Trigger: GATGGACACAATTCTGGTCCAGAAGAAGAAAAGATG...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTTGGTAGCTGCATTATaGTTGTCGAGATCTAGAAAT +
Preference number: 4 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHLVAAL*LSRSRN
Trigger: ATTTCTAGATCTCGACAACCATAATGCAGCTACCAA...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTATCGCTGAGGAGTGTATaGAGACCCTGTCTGCAGCAT +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLSLRSV*RPCLQH
Trigger: ATGCTGCAGACAGGGTCTCCATACACTCCTCAGCGA...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AAACTAACTATTGAGGTAATTGTCGCTCTCAGTGAAACAGCAGGGAACCAGCAGATGCATCTGCAATCCTaGTGGTCTGTGTACTTCTTG +
Preference number: 4 (lower is better)
Translates to: KLTIEVIVALSETAGNQQMHLQS*WSVYFL
Trigger: CAAGAAGTACACAGACCACCAGGATTGCAGATGCAT...CTGCTGGTTCCCTGCTGTTTCACTGAGAGCGACAATTACCTCAATAGTTAGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp TTCTGTAAACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCGAGGAAGGAACTCCATaGGGTAGAAAGCTTGACTGT +
Preference number: 4 (lower is better)
Translates to: FCKLDPAPKTLILQVVPSEEGTP*GRKLDC
Trigger: ACAGTCAAGCTTTCTACCTCATGGAGTTCCTTCCTC...GGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGTTTACAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATAAGGAGTTTTCTTCCTaGTTTTCACTGGATATAATC +
Preference number: 4 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHKEFSS*FSLDII
Trigger: GATTATATCCAGTGAAAAGCAGGAAGAAAACTCCTT...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp ACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCCAAATATAGAAGGAATAAATCCTaGCTGGAATGGAGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: TGPSSKNINTTSSPFPKYRRNKS*LEWSWW
Trigger: CCACCAGCTCCATTCCAGGCAGGATTTATTCCTTCT...ATATTTGGGGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTAACTCGGGAGGAGAGCTaGTGCATGGCAATCATTTCA +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLTREES*CMAIIS
Trigger: TGAAATGATTGCCATGCAGCAGCTCTCCTCCCGAGT...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp AAACTAACTATTGAGGTAATTGTCGCTCTCAGTGAAACAGCAGGGAACCAGCAGAGAACAAATGCTTGCTaGTTTCTCTTCATGTCCAGG +
Preference number: 4 (lower is better)
Translates to: KLTIEVIVALSETAGNQQRTNAC*FLFMSR
Trigger: CCTGGACATGAAGAGAAAGCAGCAAGCATTTGTTCT...CTGCTGGTTCCCTGCTGTTTCACTGAGAGCGACAATTACCTCAATAGTTAGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp CAACCATACAGCAAACAAATGTCATTGGACAATAACACCATGGCCAGTCAAGAGATAGAGGCCAAACCTTaGAAACTTGGACTCATAGGG +
Preference number: 4 (lower is better)
Translates to: QPYSKQMSLDNNTMASQEIEAKP*KLGLIG
Trigger: CCCTATGAGTCCAAGTTTGCAAGGTTTGGCCTCTAT...CTCTTGACTGGCCATGGTGTTATTGTCCAATGACATTTGTTTGCTGTATGGTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp TTCTGTAAACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCGTTGACAGTGAGTTCTaGCGCTTGGTAGCTGCATTA +
Preference number: 4 (lower is better)
Translates to: FCKLDPAPKTLILQVVPSVDSEF*RLVAAL
Trigger: TAATGCAGCTACCAAGCGGCAGAACTCACTGTCAAC...GGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGTTTACAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTATGTGACTGCACTGGATaGATCTGCAATCCTGGTGGT +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLCDCTG*ICNPGG
Trigger: ACCACCAGGATTGCAGATGCATCCAGTGCAGTCACA...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AATCTGGCTCAGAAAGCAAGAGTAGCTGTACATTTATTTTTAAGAGATTGGACGACAGCCTTGCACAGCTaGGCTGCTGTAGCTATTGTC +
Preference number: 4 (lower is better)
Translates to: NLAQKARVAVHLFLRDWTTALHS*AAVAIV
Trigger: GACAATAGCTACAGCAGCCCAGCTGTGCAAGGCTGT...CGTCCAATCTCTTAAAAATAAATGTACAGCTACTCTTGCTTTCTGAGCCAGATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TTAGCTGCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACAAACCTTGCAAACTTaGACTCATAGGGTACTGTGT +
Preference number: 4 (lower is better)
Translates to: LAAHESLKAPLQPYMYPPQTLQT*THRVLC
Trigger: ACACAGTACCCTATGAGTCCAAGTTTGCAAGGTTTG...TGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TTAGCTGCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACATCTGCAATCCTGGTaGTCTGTGTACTTCTTGAAA +
Preference number: 4 (lower is better)
Translates to: LAAHESLKAPLQPYMYPPHLQSW*SVYFLK
Trigger: TTTCAAGAAGTACACAGACCACCAGGATTGCAGATG...TGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp TTAGCTGCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCAGGTGTTCTTGTTCTTTaGTGTCTTATAAGTGTCTGC +
Preference number: 4 (lower is better)
Translates to: LAAHESLKAPLQPYMYPPGVLVL*CLISVC
Trigger: GCAGACACTTATAAGACATCAAAGAACAAGAACACC...TGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp TTCTGTAAACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCAAATCCTGCCTGGAATaGAGCTGGTGGATACATGTT +
Preference number: 4 (lower is better)
Translates to: FCKLDPAPKTLILQVVPSKSCLE*SWWIHV
Trigger: AACATGTATCCACCAGCTCCATTCCAGGCAGGATTT...GGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGTTTACAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTAAGTGTCTGCAGAGTCTaGAGCATCACTTTTGAGTTG +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLSVCRV*SITFEL
Trigger: CAACTCAAAAGTGATGCTTCAGACTCTGCAGACACT...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp ACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCCAAATATTCTGGGCAATCATGTTaGAAATTTCAGGCAGGAAGT +
Preference number: 4 (lower is better)
Translates to: TGPSSKNINTTSSPFPKYSGQSC*KFQAGS
Trigger: ACTTCCTGCCTGAAATTTGCAACATGATTGCCCAGA...ATATTTGGGGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTATTTAACATCTGCTCTTaGTCCTTCTTCTGCACGGCA +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLFNICS*SFFCTA
Trigger: TGCCGTGCAGAAGAAGGAGCAAGAGCAGATGTTAAA...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTAGGACCTTCCTTGTACTaGGTCTTCTTTGTACATTCG +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLGPSLY*VFFVHS
Trigger: CGAATGTACAAAGAAGACCCAGTACAAGGAAGGTCC...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp ACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCCAAATATCATCTGCAATCCTGGTaGTCTGTGTACTTCTTGAAA +
Preference number: 4 (lower is better)
Translates to: TGPSSKNINTTSSPFPKYHLQSW*SVYFLK
Trigger: TTTCAAGAAGTACACAGACCACCAGGATTGCAGATG...ATATTTGGGGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp AATCTGGCTCAGAAAGCAAGAGTAGCTGTACATTTATTTTTAAGAGATTGGACGGTTTTTCTATCTTGGTaGGCATGGGAGTTTCCTCTA +
Preference number: 4 (lower is better)
Translates to: NLAQKARVAVHLFLRDWTVFLSW*AWEFPL
Trigger: TAGAGGAAACTCCCATGCTCACCAAGATAGAAAAAC...CGTCCAATCTCTTAAAAATAAATGTACAGCTACTCTTGCTTTCTGAGCCAGATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp CAACCATACAGCAAACAAATGTCATTGGACAATAACACCATGGCCAGTCAAGAGAAGGAGTTTTCTTCCTaGTTTTCACTGGATATAATC +
Preference number: 4 (lower is better)
Translates to: QPYSKQMSLDNNTMASQEKEFSS*FSLDII
Trigger: GATTATATCCAGTGAAAAGCAGGAAGAAAACTCCTT...CTCTTGACTGGCCATGGTGTTATTGTCCAATGACATTTGTTTGCTGTATGGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AATCTGGCTCAGAAAGCAAGAGTAGCTGTACATTTATTTTTAAGAGATTGGACGGATTTGATGGACAGGTaGTCAGACATAAACCTATGT +
Preference number: 4 (lower is better)
Translates to: NLAQKARVAVHLFLRDWTDLMDR*SDINLC
Trigger: ACATAGGTTTATGTCTGACCACCTGTCCATCAAATC...CGTCCAATCTCTTAAAAATAAATGTACAGCTACTCTTGCTTTCTGAGCCAGATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR TCA 90 bp AATCTGGCTCAGAAAGCAAGAGTAGCTGTACATTTATTTTTAAGAGATTGGACGATTTTCGGCAATTTCTaGACATGGTCTTCATGTCAT +
Preference number: 4 (lower is better)
Translates to: NLAQKARVAVHLFLRDWTIFGNF*TWSSCH
Trigger: ATGACATGAAGACCATGTTCAGAAATTGCCGAAAAT...CGTCCAATCTCTTAAAAATAAATGTACAGCTACTCTTGCTTTCTGAGCCAGATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR GCA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTATTAATTTCTTCTCCATaGTTGAAATATCCATGGGGA +
Preference number: 4 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLLISSP*LKYPWG
Trigger: TCCCCATGGATATTTCAAGCATGGAGAAGAAATTAA...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CCA 90 bp AATCTGGCTCAGAAAGCAAGAGTAGCTGTACATTTATTTTTAAGAGATTGGACGAATTGTCAGACATCTTaGTATACTCACTACTGTCAC +
Preference number: 4 (lower is better)
Translates to: NLAQKARVAVHLFLRDWTNCQTS*YTHYCH
Trigger: GTGACAGTAGTGAGTATACCAAGATGTCTGACAATT...CGTCCAATCTCTTAAAAATAAATGTACAGCTACTCTTGCTTTCTGAGCCAGATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
3UTR CAA 72 bp AATCGAGAGCCTTTTACCAGCAAGTATCAATCACATTaGTCACATTCATTCTTGGGGTTTGTTTGCTATTTT +
Preference number: 4 (lower is better)
Translates to: NREPFTSKYQSH*SHSFLGFVCYF
Trigger: AAAATAGCAAACAAACCCCAAGAATGAATGTGACAAATGTGATTGATACTTGCTGGTAAAAGGCTCTCGATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS CCA 90 bp CGGGCAGGCGGAACGCCGTGCGAAAGAGCGAGCAGAAGTGCGCGATaGCCGGGACTTCCCACCAGGAGCGGAGCTCGCCCAGCCCGGCCG +
Preference number: 5 (lower is better)
Translates to: RAGGTPCERASRSAR*PGLPTRSGARPARP
Trigger: CGGCCGGGCTGGGCGAGCTCCGCTCCTGGTGGGAAGTCCCGGCCATCGCGCACTTCTGCTCGCTCTTTCGCACGGCGTTCCGCCTGCCCG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 90 bp TCGAAGTCGGGCAGGCGGAACGCCGTGCGAAAGAGCGAGCAGAAGTaGGCGATGGCCGGGACTTCCCACCAGGAGCGGAGCTCGCCCAGC +
Preference number: 5 (lower is better)
Translates to: SKSGRRNAVRKSEQK*AMAGTSHQERSSPS
Trigger: GCTGGGCGAGCTCCGCTCCTGGTGGGAAGTCCCGGCCATCGCGCACTTCTGCTCGCTCTTTCGCACGGCGTTCCGCCTGCCCGACTTCGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 90 bp CTGCCTCTAACTCCTCGATCTCGAAGTCGGGCAGGCGGAACGCCGTaGGAAAGAGCGAGCAGAAGTGCGCGATGGCCGGGACTTCCCACC +
Preference number: 5 (lower is better)
Translates to: LPLTPRSRSRAGGTP*ERASRSARWPGLPT
Trigger: GGTGGGAAGTCCCGGCCATCGCGCACTTCTGCTCGCTCTTTCGCACGGCGTTCCGCCTGCCCGACTTCGAGATCGAGGAGTTAGAGGCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 90 bp CCCCCGGAGGGCCTGGGAGGGCCCTCTGAATCGAGGACTTGGTGCTaGAGTTGGAGGTGGCTGCAAACGATGTCCAGCAGACTTACAGGG +
Preference number: 5 (lower is better)
Translates to: PPEGLGGPSESRTWC*SWRWLQTMSSRLTG
Trigger: CCCTGTAAGTCTGCTGGACATCGTTTGCAGCCACCTCCAACTCCAGCACCAAGTCCTCGATTCAGAGGGCCCTCCCAGGCCCTCCGGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS-3UTR CAA 90 bp CTTCGGGTCTCCACATGCAGCCGTCCACTTCCTTGGGGCTTAGTTCCTCCCTGGCCTGGTACAGCTGGCTaGCAAGGGAGGTGCTGGGTG +
Preference number: 5 (lower is better)
Translates to: LRVSTCSRPLPWGLVPPWPGTAG*QGRCWV
Trigger: CACCCAGCACCTCCCTTGCAAGCCAGCTGTACCAGG...CCAGGGAGGAACTAAGCCCCAAGGAAGTGGACGGCTGCATGTGGAGACCCGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 90 bp CATGGCAATCATTTCAGGGCTGTCCATCATGGATTCCCCTCCTTGTaGCCCCCGGAGGGCCTGGGAGGGCCCTCTGAATCGAGGACTTGG +
Preference number: 5 (lower is better)
Translates to: HGNHFRAVHHGFPSL*PPEGLGGPSESRTW
Trigger: CCAAGTCCTCGATTCAGAGGGCCCTCCCAGGCCCTCCGGGGGGCACAAGGAGGGGAATCCATGATGGACAGCCCTGAAATGATTGCCATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS TCA 90 bp TGTGATGTGCCCACCTCTGGAGGGAGTTGTATGGAACTCCTACTCTaGTCGTCCCCTGAGGAGGCAGCTCGGCGTGCCGGGGGCAATGAT +
Preference number: 5 (lower is better)
Translates to: CDVPTSGGSCMELLL*SSPEEAARRAGGND
Trigger: ATCATTGCCCCCGGCACGCCGAGCTGCCTCCTCAGGGGACGATCAGAGTAGGAGTTCCATACAACTCCCTCCAGAGGTGGGCACATCACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100993.9
CDS CCA 90 bp GCGTGGCTAGGCACCCTACCACAGTGCAGGGGGCGAGAAAAGCCTTaGCCATGTGATGTGCCCACCTCTGGAGGGAGTTGTATGGAACTC +
Preference number: 5 (lower is better)
Translates to: AWLGTLPQCRGREKP*PCDVPTSGGSCMEL
Trigger: GAGTTCCATACAACTCCCTCCAGAGGTGGGCACATCACATGGCCAAGGCTTTTCTCGCCCCCTGCACTGTGGTAGGGTGCCTAGCCACGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100993.9
CDS CCA 90 bp CCTCTTCCTGACAGCAGTAGAGGGAATCCTCTGGAGAGAGGCCATTaGGTTGGGTGGCTACTGGATGGGGAGGTGGATGGGCAGGCACAG +
Preference number: 5 (lower is better)
Translates to: PLPDSSRGNPLERGH*VGWLLDGEVDGQAQ
Trigger: CTGTGCCTGCCCATCCACCTCCCCATCCAGTAGCCACCCAACCCAATGGCCTCTCTCCAGAGGATTCCCTCTACTGCTGTCAGGAAGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp GACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCCCTGGTACAGCTGGCTaGCAAGGGAGGTGCTGGGTG +
Preference number: 5 (lower is better)
Translates to: DDRTEMYNSHSSKSARPAPGTAG*QGRCWV
Trigger: CACCCAGCACCTCCCTTGCAAGCCAGCTGTACCAGG...GGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 90 bp TTGTCCAATGCAGGCTTGGGCGCCGACACACAGACTGAAGCTGAATaGGCTACCTGCGGAAAGGGACCAGGTAACTGGGGAGGAGTGGGC +
Preference number: 5 (lower is better)
Translates to: LSNAGLGADTQTEAE*ATCGKGPGNWGGVG
Trigger: GCCCACTCCTCCCCAGTTACCTGGTCCCTTTCCGCAGGTAGCTCATTCAGCTTCAGTCTGTGTGTCGGCGCCCAAGCCTGCATTGGACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS-3UTR CAA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCAGAGAGGCCATTGGGTaGGGTGGCTACTGGATGGGG +
Preference number: 5 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQAREAIG*GGYWMG
Trigger: CCCCATCCAGTAGCCACCCAACCCAATGGCCTCTCT...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 90 bp AGGCACCCTACCACAGTGCAGGGGGCGAGAAAAGCCTTGGCCATGTaGTGTGCCCACCTCTGGAGGGAGTTGTATGGAACTCCTACTCTG +
Preference number: 5 (lower is better)
Translates to: RHPTTVQGARKALAM*CAHLWRELYGTPTL
Trigger: CAGAGTAGGAGTTCCATACAACTCCCTCCAGAGGTGGGCACATCACATGGCCAAGGCTTTTCTCGCCCCCTGCACTGTGGTAGGGTGCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100993.9
CDS TCA 90 bp GGCAGGCACAGGGGATGGGTATGCCCTGGGCTGAAAATGACTGGCTaGTCGCTGAGGAGTGTATGGAGACCCTGTCTGCAGCATCACACT +
Preference number: 5 (lower is better)
Translates to: GRHRGWVCPGLKMTG*SLRSVWRPCLQHHT
Trigger: AGTGTGATGCTGCAGACAGGGTCTCCATACACTCCTCAGCGATCAGCCAGTCATTTTCAGCCCAGGGCATACCCATCCCCTGTGCCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 90 bp TCCCGCTTTCTCTCCTCCTTTAACATCTGCTCTTGCTCCTTCTTCTaGACGGCAAGAAGGAGCTGTCGCTCCTCCTCCTCCTCCCTGCGC +
Preference number: 5 (lower is better)
Translates to: SRFLSSFNICSCSFF*TARRSCRSSSSSLR
Trigger: GCGCAGGGAGGAGGAGGAGGAGCGACAGCTCCTTCTTGCCGTGCAGAAGAAGGAGCAAGAGCAGATGTTAAAGGAGGAGAGAAAGCGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000129803.2
CDS GCA 90 bp GAGGGCCCTCTGAATCGAGGACTTGGTGCTGGAGTTGGAGGTGGCTaGAAACGATGTCCAGCAGACTTACAGGGTGGCTGCATATACCCC +
Preference number: 5 (lower is better)
Translates to: EGPLNRGLGAGVGGG*KRCPADLQGGCIYP
Trigger: GGGGTATATGCAGCCACCCTGTAAGTCTGCTGGACATCGTTTGCAGCCACCTCCAACTCCAGCACCAAGTCCTCGATTCAGAGGGCCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS CCA 90 bp AAAAGCCTTGGCCATGTGATGTGCCCACCTCTGGAGGGAGTTGTATaGAACTCCTACTCTGATCGTCCCCTGAGGAGGCAGCTCGGCGTG +
Preference number: 5 (lower is better)
Translates to: KSLGHVMCPPLEGVV*NSYSDRPLRRQLGV
Trigger: CACGCCGAGCTGCCTCCTCAGGGGACGATCAGAGTAGGAGTTCCATACAACTCCCTCCAGAGGTGGGCACATCACATGGCCAAGGCTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100993.9
CDS CCA 90 bp GGTAAGGCACACCTGGGGGACAGACTCGGGAGGAGAGCTGCTGCATaGCAATCATTTCAGGGCTGTCCATCATGGATTCCCCTCCTTGTG +
Preference number: 5 (lower is better)
Translates to: GKAHLGDRLGRRAAA*QSFQGCPSWIPLLV
Trigger: CACAAGGAGGGGAATCCATGATGGACAGCCCTGAAATGATTGCCATGCAGCAGCTCTCCTCCCGAGTCTGTCCCCCAGGTGTGCCTTACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS CCA 90 bp GATGGGCAGGCACAGGGGATGGGTATGCCCTGGGCTGAAAATGACTaGCTGATCGCTGAGGAGTGTATGGAGACCCTGTCTGCAGCATCA +
Preference number: 5 (lower is better)
Translates to: DGQAQGMGMPWAEND*LIAEECMETLSAAS
Trigger: TGATGCTGCAGACAGGGTCTCCATACACTCCTCAGCGATCAGCCAGTCATTTTCAGCCCAGGGCATACCCATCCCCTGTGCCTGCCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp GACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCGTCCCTCAAACAGCCTaGCACAGCTGGGCTGCTGTA +
Preference number: 5 (lower is better)
Translates to: DDRTEMYNSHSSKSARPAVPQTA*HSWAAV
Trigger: TACAGCAGCCCAGCTGTGCAAGGCTGTTTGAGGGAC...GGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 90 bp CTGGGAGGGCCCTCTGAATCGAGGACTTGGTGCTGGAGTTGGAGGTaGCTGCAAACGATGTCCAGCAGACTTACAGGGTGGCTGCATATA +
Preference number: 5 (lower is better)
Translates to: LGGPSESRTWCWSWR*LQTMSSRLTGWLHI
Trigger: TATATGCAGCCACCCTGTAAGTCTGCTGGACATCGTTTGCAGCCACCTCCAACTCCAGCACCAAGTCCTCGATTCAGAGGGCCCTCCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS-3UTR CAA 90 bp CTTCGGGTCTCCACATGCAGCCGTCCACTTCCTTGGGGCTTAGTTCCTCCCTGGAAGGAGAGTTCTCCATaGGACCTTCCTTGTACTGGG +
Preference number: 5 (lower is better)
Translates to: LRVSTCSRPLPWGLVPPWKESSP*DLPCTG
Trigger: CCCAGTACAAGGAAGGTCCAATGGAGAACTCTCCTT...CCAGGGAGGAACTAAGCCCCAAGGAAGTGGACGGCTGCATGTGGAGACCCGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 90 bp CCAGGGTGGGGACCATTAGCCTGGAAACCCCTGGGAGGAAAGGACTaGGGTTGTGATCCTGAGGACTTTCCTCCCATCATAGAGGCCAAA +
Preference number: 5 (lower is better)
Translates to: PGWGPLAWKPLGGKD*GCDPEDFPPIIEAK
Trigger: TTTGGCCTCTATGATGGGAGGAAAGTCCTCAGGATCACAACCTCAGTCCTTTCCTCCCAGGGGTTTCCAGGCTAATGGTCCCCACCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 90 bp CATTCTCCACTGGTGGCTGTTTCCTGCTCGACCCTTCTGTGTCTCTaGAGCGCGTCCAAACATGGCTTCCACTACTTCTACCAGACCGAC +
Preference number: 5 (lower is better)
Translates to: HSPLVAVSCSTLLCL*SASKHGFHYFYQTD
Trigger: GTCGGTCTGGTAGAAGTAGTGGAAGCCATGTTTGGACGCGCTCCAGAGACACAGAAGGGTCGAGCAGGAAACAGCCACCAGTGGAGAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp CTTCGGGTCTCCACATGCAGCCGTCCACTTCCTTGGGGCTTAGTTCCTCCCTGGTCTAGCTTGATGGATTaGATGGACAGGTGGTCAGAC +
Preference number: 5 (lower is better)
Translates to: LRVSTCSRPLPWGLVPPWSSLMD*MDRWSD
Trigger: GTCTGACCACCTGTCCATCAAATCCATCAAGCTAGA...CCAGGGAGGAACTAAGCCCCAAGGAAGTGGACGGCTGCATGTGGAGACCCGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp CTTCGGGTCTCCACATGCAGCCGTCCACTTCCTTGGGGCTTAGTTCCTCCCTGGGGAGTTTCCTCTAGCTaGATGGATTTGATGGACAGG +
Preference number: 5 (lower is better)
Translates to: LRVSTCSRPLPWGLVPPWGVSSS*MDLMDR
Trigger: CCTGTCCATCAAATCCATCAAGCTAGAGGAAACTCC...CCAGGGAGGAACTAAGCCCCAAGGAAGTGGACGGCTGCATGTGGAGACCCGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp GGTGGAGCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCGACTTGGTGCTGGAGTaGGAGGTGGCTGCAAACGAT +
Preference number: 5 (lower is better)
Translates to: GGAGRQDRDVQQSFLQVRDLVLE*EVAAND
Trigger: ATCGTTTGCAGCCACCTCCAACTCCAGCACCAAGTC...GCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGCTCCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 90 bp AGACTAGACAGGACATTCTTCTCTGAAAAGAGGGAGCGTGGAGGGTaGCTTCCTGGGGGTCCACTTGGGCTTCTCTGGGAAGGGAGAGAT +
Preference number: 5 (lower is better)
Translates to: RLDRTFFSEKRERGG*LPGGPLGLLWEGRD
Trigger: ATCTCTCCCTTCCCAGAGAAGCCCAAGTGGACCCCCAGGAAGTCACCCTCCACGCTCCCTCTTTTCAGAGAAGAATGTCCTGTCTAGTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 90 bp TCAGAGCTTTCAGGAAAGTCTGGGGGTCGGGCTGGAGTCCCACCATaGCTAGAAGGAATAAATCCTGCCTGGAATGGAGCTGGTGGATAC +
Preference number: 5 (lower is better)
Translates to: SELSGKSGGRAGVPP*LEGINPAWNGAGGY
Trigger: GTATCCACCAGCTCCATTCCAGGCAGGATTTATTCCTTCTAGGCATGGTGGGACTCCAGCCCGACCCCCAGACTTTCCTGAAAGCTCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 90 bp ACCGGGAGGAATTTCAGAGCTTTCAGGAAAGTCTGGGGGTCGGGCTaGAGTCCCACCATGCCTAGAAGGAATAAATCCTGCCTGGAATGG +
Preference number: 5 (lower is better)
Translates to: TGRNFRAFRKVWGSG*SPTMPRRNKSCLEW
Trigger: CCATTCCAGGCAGGATTTATTCCTTCTAGGCATGGTGGGACTCCAGCCCGACCCCCAGACTTTCCTGAAAGCTCTGAAATTCCTCCCGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 90 bp TTTCAGTCATCTCCTGTGTACTCCCAGGGTTGTCCAATGCAGGCTTaGGCGCCGACACACAGACTGAAGCTGAATGAGCTACCTGCGGAA +
Preference number: 5 (lower is better)
Translates to: FQSSPVYSQGCPMQA*APTHRLKLNELPAE
Trigger: TTCCGCAGGTAGCTCATTCAGCTTCAGTCTGTGTGTCGGCGCCCAAGCCTGCATTGGACAACCCTGGGAGTACACAGGAGATGACTGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS-3UTR CAA 90 bp GGTGGAGCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCTCGCTGATAGCAGCCTaGAAGCAAGCAGGCAATCAG +
Preference number: 5 (lower is better)
Translates to: GGAGRQDRDVQQSFLQVRSLIAA*KQAGNQ
Trigger: CTGATTGCCTGCTTGCTTCAAGGCTGCTATCAGCGA...GCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGCTCCACC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp AGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTTCGGGTCTCCGCTTCTCTCAGAGGATaGGGCTTTCCTTCTTCAAGC +
Preference number: 5 (lower is better)
Translates to: RDVQQSFLQVRQACLRVSASLRG*GFPSSS
Trigger: GCTTGAAGAAGGAAAGCCCAATCCTCTGAGAGAAGC...GGAGACCCGAAGGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 90 bp GGTGAGCTTTGCCTGGTACAGCTGGCTTGCAAGGGAGGTGCTGGGTaGGGTAGCTGTTTGAGGTATACCCCCTCTGAAGAACAAATGCTT +
Preference number: 5 (lower is better)
Translates to: GELCLVQLACKGGAG*GSCLRYTPSEEQML
Trigger: AAGCATTTGTTCTTCAGAGGGGGTATACCTCAAACAGCTACCTCACCCAGCACCTCCCTTGCAAGCCAGCTGTACCAGGCAAAGCTCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS TCA 90 bp TCTGGGATTCTAGAGGAGCCATGTAAGTTGGTGGGATCTGATCCTTaGAGAGAGCCAAATGTTCCTGGTGCTGCTGGCCTCTCTGGAGGG +
Preference number: 5 (lower is better)
Translates to: SGILEEPCKLVGSDP*REPNVPGAAGLSGG
Trigger: CCCTCCAGAGAGGCCAGCAGCACCAGGAACATTTGGCTCTCTTCAAGGATCAGATCCCACCAACTTACATGGCTCCTCTAGAATCCCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp AGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCTTCGGGTCTCCCTCGGGATCCATTTCTaGTCTGTAGGTCAGATGTCA +
Preference number: 5 (lower is better)
Translates to: RDVQQSFLQVRQACLRVSLGIHF*SVGQMS
Trigger: TGACATCTGACCTACAGACAAGAAATGGATCCCGAG...GGAGACCCGAAGGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp GCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCCACCAGGAAAATGTTTaGTCATGGCCCGATGGAAAC +
Preference number: 5 (lower is better)
Translates to: AGRQDRDVQQSFLQVRQAHQENV*SWPDGN
Trigger: GTTTCCATCGGGCCATGACAAAACATTTTCCTGGTG...GGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTCTGGAGAGAGGCCATaGGGTTGGGTGGCTACTGGA +
Preference number: 5 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHSGERP*GWVATG
Trigger: TCCAGTAGCCACCCAACCCAATGGCCTCTCTCCAGA...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 90 bp CTGCCACTATGGAGAGGTCCCTCAAACAGCCTTGCACAGCTGGGCTaGTGTAGCTATTGTCCAAAGGCCAGGTGTTCTTGTTCTTTGATG +
Preference number: 5 (lower is better)
Translates to: LPLWRGPSNSLAQLG*CSYCPKARCSCSLM
Trigger: CATCAAAGAACAAGAACACCTGGCCTTTGGACAATAGCTACAGCAGCCCAGCTGTGCAAGGCTGTTTGAGGGACCTCTCCATAGTGGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS-3UTR CAA 90 bp GCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGGTCCCTCAAACAGCCTaGCACAGCTGGGCTGCTGTA +
Preference number: 5 (lower is better)
Translates to: AHESLKAPLQPYMYPPPKVPQTA*HSWAAV
Trigger: TACAGCAGCCCAGCTGTGCAAGGCTGTTTGAGGGAC...CTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTTCTGGAGAGAGGCCATaGGGTTGGGTGGCTACTGGA +
Preference number: 5 (lower is better)
Translates to: FVSCADDPSYRPASHLKSSGERP*GWVATG
Trigger: TCCAGTAGCCACCCAACCCAATGGCCTCTCTCCAGA...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 90 bp CAGAGGCGATGCAGGATCTCTACTCGAGTACGCAGAGGAAGGTCTTaGAAACTAGCTTCTCTCAGAGGATTGGGCTTTCCTTCTTCAAGC +
Preference number: 5 (lower is better)
Translates to: QRRCRISTRVRRGRS*KLASLRGLGFPSSS
Trigger: GCTTGAAGAAGGAAAGCCCAATCCTCTGAGAGAAGCTAGTTTCCAAGACCTTCCTCTGCGTACTCGAGTAGAGATCCTGCATCGCCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 90 bp GCTTCTCTGGGAAGGGAGAGATCTCTGCCAATCAGAAAAGCCCTGTaGACATGTATAATAAGGAGTCCGCTGATAGGGGTGGTAGGAAGG +
Preference number: 5 (lower is better)
Translates to: ASLGRERSLPIRKAL*TCIIRSPLIGVVGR
Trigger: CCTTCCTACCACCCCTATCAGCGGACTCCTTATTATACATGTCCACAGGGCTTTTCTGATTGGCAGAGATCTCTCCCTTCCCAGAGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTCGCTGATAGCAGCCTaGAAGCAAGCAGGCAATCAG +
Preference number: 5 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHSLIAA*KQAGNQ
Trigger: CTGATTGCCTGCTTGCTTCAAGGCTGCTATCAGCGA...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATGTTGCAACTCTGGCTTaGTGCGCTGTGGACGTTTTC +
Preference number: 5 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHVATLA*CAVDVF
Trigger: GAAAACGTCCACAGCGCACAAAGCCAGAGTTGCAAC...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTGACTTGGTGCTGGAGTaGGAGGTGGCTGCAAACGAT +
Preference number: 5 (lower is better)
Translates to: FVSCADDPSYRPASHLKSDLVLE*EVAAND
Trigger: ATCGTTTGCAGCCACCTCCAACTCCAGCACCAAGTC...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 90 bp TCTGGGATTCTAGAGGAGCCATGTAAGTTGGTGGGATCTGATCCTTaGAGAGAGCCAAATGTTCCTGGTGCTGCTGGCCTCATCTGGTTT +
Preference number: 5 (lower is better)
Translates to: SGILEEPCKLVGSDP*REPNVPGAAGLIWF
Trigger: AAACCAGATGAGGCCAGCAGCACCAGGAACATTTGGCTCTCTTCAAGGATCAGATCCCACCAACTTACATGGCTCCTCTAGAATCCCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100993.9
CDS CCA 90 bp ATCCTGCCTGGAATGGAGCTGGTGGATACATGTTTCCATCTTGACTaGGACAATTCATCTGCCCAAGCTGTAAGGATGGGACATGTGACC +
Preference number: 5 (lower is better)
Translates to: ILPGMELVDTCFHLD*DNSSAQAVRMGHVT
Trigger: GGTCACATGTCCCATCCTTACAGCTTGGGCAGATGAATTGTCCCAGTCAAGATGGAAACATGTATCCACCAGCTCCATTCCAGGCAGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 90 bp AGAACAAATGCTTGCTGCTTTCTCTTCATGTCCAGGCAAAGGCTCTaGGTCTTCCTCGGGCTCGTGTGTTTCAGTCATCTCCTGTGTACT +
Preference number: 5 (lower is better)
Translates to: RTNACCFLFMSRQRL*VFLGLVCFSHLLCT
Trigger: AGTACACAGGAGATGACTGAAACACACGAGCCCGAGGAAGACCCAGAGCCTTTGCCTGGACATGAAGAGAAAGCAGCAAGCATTTGTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143563.2
CDS-3UTR CAA 90 bp GGTGGAGCAGGACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCTTCTGTTTTTCTATCTaGGTGAGCATGGGAGTTTCC +
Preference number: 5 (lower is better)
Translates to: GGAGRQDRDVQQSFLQVRFCFSI*VSMGVS
Trigger: GGAAACTCCCATGCTCACCAAGATAGAAAAACAGAA...GCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTCCTGCTCCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TTAGCTGCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCATGTGTACTCCCAGGGTaGTCCAATGCAGGCTTGGGC +
Preference number: 5 (lower is better)
Translates to: LAAHESLKAPLQPYMYPPCVLPG*SNAGLG
Trigger: GCCCAAGCCTGCATTGGACAACCCTGGGAGTACACA...TGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp GACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCCTACATCCATTTGAGTaGGAGAAGTTAAGGCAGTAT +
Preference number: 5 (lower is better)
Translates to: DDRTEMYNSHSSKSARPALHPFE*EKLRQY
Trigger: ATACTGCCTTAACTTCTCCAACTCAAATGGATGTAG...GGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 90 bp AGCTTGATGGATTTGATGGACAGGTGGTCAGACATAAACCTATGTTaGAACTCTGGCTTTGTGCGCTGTGGACGTTTTCCCTTCTGGGCA +
Preference number: 5 (lower is better)
Translates to: SLMDLMDRWSDINLC*NSGFVRCGRFPFWA
Trigger: TGCCCAGAAGGGAAAACGTCCACAGCGCACAAAGCCAGAGTTGCAACATAGGTTTATGTCTGACCACCTGTCCATCAAATCCATCAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 90 bp AGTCCCACCATGCCTAGAAGGAATAAATCCTGCCTGGAATGGAGCTaGTGGATACATGTTTCCATCTTGACTGGGACAATTCATCTGCCC +
Preference number: 5 (lower is better)
Translates to: SPTMPRRNKSCLEWS*WIHVSILTGTIHLP
Trigger: GGGCAGATGAATTGTCCCAGTCAAGATGGAAACATGTATCCACCAGCTCCATTCCAGGCAGGATTTATTCCTTCTAGGCATGGTGGGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 90 bp ATGATAAATATGACCGGGAGGAATTTCAGAGCTTTCAGGAAAGTCTaGGGGTCGGGCTGGAGTCCCACCATGCCTAGAAGGAATAAATCC +
Preference number: 5 (lower is better)
Translates to: MINMTGRNFRAFRKV*GSGWSPTMPRRNKS
Trigger: GGATTTATTCCTTCTAGGCATGGTGGGACTCCAGCCCGACCCCCAGACTTTCCTGAAAGCTCTGAAATTCCTCCCGGTCATATTTATCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTAAGGAGAGTTCTCCATaGGACCTTCCTTGTACTGGG +
Preference number: 5 (lower is better)
Translates to: FVSCADDPSYRPASHLKSKESSP*DLPCTG
Trigger: CCCAGTACAAGGAAGGTCCAATGGAGAACTCTCCTT...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp ACTTTGAACTCAGAGGTCTTTCTGCCTCTGCCTGCTGGAATTAAAGGCCTGTGCCCATTCTTCTTCTGTTaGACACAGGAGCCACCAAGT +
Preference number: 5 (lower is better)
Translates to: TLNSEVFLPLPAGIKGLCPFFFC*TQEPPS
Trigger: ACTTGGTGGCTCCTGTGTCAAACAGAAGAAGAATGG...GCACAGGCCTTTAATTCCAGCAGGCAGAGGCAGAAAGACCTCTGAGTTCAAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp GAAGGCTTGATTCACAGTGAAGAGGTGGAGCAGGACGACAGGACAGAGATGTACTTCTGGGCAATCATGTaGCAAATTTCAGGCAGGAAG +
Preference number: 5 (lower is better)
Translates to: EGLIHSEEVEQDDRTEMYFWAIM*QISGRK
Trigger: CTTCCTGCCTGAAATTTGCAACATGATTGCCCAGAA...GTACATCTCTGTCCTGTCGTCCTGCTCCACCTCTTCACTGTGAATCAAGCCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTCGATCTTCCACTGCCTaGACCTTTTCCTCCATTTCC +
Preference number: 5 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSRSSTA*TFSSIS
Trigger: GGAAATGGAGGAAAAGGTCAAGGCAGTGGAAGATCG...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp GACGACAGGACAGAGATGTACAACAGTCATTCCTCCAAGTCCGCCAGGCCTGCCAGGTGTTCTTGTTCTTaGATGTCTTATAAGTGTCTG +
Preference number: 5 (lower is better)
Translates to: DDRTEMYNSHSSKSARPARCSCS*MSYKCL
Trigger: CAGACACTTATAAGACATCAAAGAACAAGAACACCT...GGCAGGCCTGGCGGACTTGGAGGAATGACTGTTGTACATCTCTGTCCTGTCGTC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp ACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCCAAATATTTCCTGGGGGTCCACTaGGGCTTCTCTGGGAAGGGA +
Preference number: 5 (lower is better)
Translates to: TGPSSKNINTTSSPFPKYFLGVH*GFSGKG
Trigger: TCCCTTCCCAGAGAAGCCCAAGTGGACCCCCAGGAA...ATATTTGGGGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 90 bp GGATTTGATGGACAGGTGGTCAGACATAAACCTATGTTGCAACTCTaGCTTTGTGCGCTGTGGACGTTTTCCCTTCTGGGCAATCATGTT +
Preference number: 5 (lower is better)
Translates to: GFDGQVVRHKPMLQL*LCALWTFSLLGNHV
Trigger: AACATGATTGCCCAGAAGGGAAAACGTCCACAGCGCACAAAGCCAGAGTTGCAACATAGGTTTATGTCTGACCACCTGTCCATCAAATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTCCATTCTTCTTCTGTTaGACACAGGAGCCACCAAGT +
Preference number: 5 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSPFFFC*TQEPPS
Trigger: ACTTGGTGGCTCCTGTGTCAAACAGAAGAAGAATGG...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTTCTGGGCAATCATGTaGCAAATTTCAGGCAGGAAG +
Preference number: 5 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHFWAIM*QISGRK
Trigger: CTTCCTGCCTGAAATTTGCAACATGATTGCCCAGAA...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTTCTAGCTTGATGGATTaGATGGACAGGTGGTCAGAC +
Preference number: 5 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSSSLMD*MDRWSD
Trigger: GTCTGACCACCTGTCCATCAAATCCATCAAGCTAGA...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTAATTCAAAGAGGTCCTaGGTCTTCTTCCCTTCCCTC +
Preference number: 5 (lower is better)
Translates to: FVSCADDPSYRPASHLKSNSKRS*VFFPSL
Trigger: GAGGGAAGGGAAGAAGACCAAGGACCTCTTTGAATT...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TTCTGTAAACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCTTGTCCAATGCAGGCTaGGGCGCCGACACACAGACT +
Preference number: 5 (lower is better)
Translates to: FCKLDPAPKTLILQVVPSLSNAG*GADTQT
Trigger: AGTCTGTGTGTCGGCGCCCAAGCCTGCATTGGACAA...GGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGTTTACAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp ACTTTGAACTCAGAGGTCTTTCTGCCTCTGCCTGCTGGAATTAAAGGCCTGTGCTCTGAAGCATCACTTTaGAGTTGGGAGTCCTCTGTT +
Preference number: 5 (lower is better)
Translates to: TLNSEVFLPLPAGIKGLCSEASL*SWESSV
Trigger: AACAGAGGACTCCCAACTCAAAAGTGATGCTTCAGA...GCACAGGCCTTTAATTCCAGCAGGCAGAGGCAGAAAGACCTCTGAGTTCAAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTATTCCTGGGGGTCCACTaGGGCTTCTCTGGGAAGGGA +
Preference number: 5 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLFLGVH*GFSGKG
Trigger: TCCCTTCCCAGAGAAGCCCAAGTGGACCCCCAGGAA...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTAAGAGAGGCCATTGGGTaGGGTGGCTACTGGATGGGG +
Preference number: 5 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLREAIG*GGYWMG
Trigger: CCCCATCCAGTAGCCACCCAACCCAATGGCCTCTCT...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 90 bp ATAAATCCTGCCTGGAATGGAGCTGGTGGATACATGTTTCCATCTTaGCTGGGACAATTCATCTGCCCAAGCTGTAAGGATGGGACATGT +
Preference number: 5 (lower is better)
Translates to: INPAWNGAGGYMFPS*LGQFICPSCKDGTC
Trigger: ACATGTCCCATCCTTACAGCTTGGGCAGATGAATTGTCCCAGTCAAGATGGAAACATGTATCCACCAGCTCCATTCCAGGCAGGATTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 90 bp ACTTTCCCTGCACAAGGAGAGTTCTCCATTGGACCTTCCTTGTACTaGGTCTTCTTTGTACATTCGTGTCCCATAGAAGTACCAGTAGAG +
Preference number: 5 (lower is better)
Translates to: TFPAQGEFSIGPSLY*VFFVHSCPIEVPVE
Trigger: CTCTACTGGTACTTCTATGGGACACGAATGTACAAAGAAGACCCAGTACAAGGAAGGTCCAATGGAGAACTCTCCTTGTGCAGGGAAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTTCCATTGGACCTTCCTaGTACTGGGTCTTCTTTGTA +
Preference number: 5 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSSIGPS*YWVFFV
Trigger: TACAAAGAAGACCCAGTACAAGGAAGGTCCAATGGA...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp GCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTCCATTGGACCTTCCTaGTACTGGGTCTTCTTTGTA +
Preference number: 5 (lower is better)
Translates to: AHESLKAPLQPYMYPPPKSIGPS*YWVFFV
Trigger: TACAAAGAAGACCCAGTACAAGGAAGGTCCAATGGA...CTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TTCTGTAAACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCAAGGAGCTTGTAGAGTaGCCGCTCTCGGAGAGAGGT +
Preference number: 5 (lower is better)
Translates to: FCKLDPAPKTLILQVVPSKELVE*PLSERG
Trigger: ACCTCTCTCCGAGAGCGGCAACTCTACAAGCTCCTT...GGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGTTTACAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 90 bp TTCTTTGTACATTCGTGTCCCATAGAAGTACCAGTAGAGTGCACCTaGATTGTCTTCACCCAGAGGTTCAACTCTGAGACTGTCTGCATC +
Preference number: 5 (lower is better)
Translates to: FFVHSCPIEVPVECT*IVFTQRFNSETVCI
Trigger: GATGCAGACAGTCTCAGAGTTGAACCTCTGGGTGAAGACAATTCAGGTGCACTCTACTGGTACTTCTATGGGACACGAATGTACAAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp CAACCATACAGCAAACAAATGTCATTGGACAATAACACCATGGCCAGTCAAGAGGCTTCTCTCAGAGGATaGGGCTTTCCTTCTTCAAGC +
Preference number: 5 (lower is better)
Translates to: QPYSKQMSLDNNTMASQEASLRG*GFPSSS
Trigger: GCTTGAAGAAGGAAAGCCCAATCCTCTGAGAGAAGC...CTCTTGACTGGCCATGGTGTTATTGTCCAATGACATTTGTTTGCTGTATGGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp AAACTAACTATTGAGGTAATTGTCGCTCTCAGTGAAACAGCAGGGAACCAGCAGCTCGGGATCCATTTCTaGTCTGTAGGTCAGATGTCA +
Preference number: 5 (lower is better)
Translates to: KLTIEVIVALSETAGNQQLGIHF*SVGQMS
Trigger: TGACATCTGACCTACAGACAAGAAATGGATCCCGAG...CTGCTGGTTCCCTGCTGTTTCACTGAGAGCGACAATTACCTCAATAGTTAGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTAAAGGAGCTTGTAGAGTaGCCGCTCTCGGAGAGAGGT +
Preference number: 5 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLKELVE*PLSERG
Trigger: ACCTCTCTCCGAGAGCGGCAACTCTACAAGCTCCTT...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp ACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCCAAATATGTTGCAACTCTGGCTTaGTGCGCTGTGGACGTTTTC +
Preference number: 5 (lower is better)
Translates to: TGPSSKNINTTSSPFPKYVATLA*CAVDVF
Trigger: GAAAACGTCCACAGCGCACAAAGCCAGAGTTGCAAC...ATATTTGGGGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp GCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTTCTGTTTTTCTATCTaGGTGAGCATGGGAGTTTCC +
Preference number: 5 (lower is better)
Translates to: AHESLKAPLQPYMYPPPKFCFSI*VSMGVS
Trigger: GGAAACTCCCATGCTCACCAAGATAGAAAAACAGAA...CTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TCCCTGAACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATAAACACCGCTCTAAATaGTCAGACATCTTGGTATAC +
Preference number: 5 (lower is better)
Translates to: SLNKSLGIWRSQQELQVHKHRSK*SDILVY
Trigger: GTATACCAAGATGTCTGACAATTTAGAGCGGTGTTT...ATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTTCAGGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp AATCTGGCTCAGAAAGCAAGAGTAGCTGTACATTTATTTTTAAGAGATTGGACGTTGTCCAATGCAGGCTaGGGCGCCGACACACAGACT +
Preference number: 5 (lower is better)
Translates to: NLAQKARVAVHLFLRDWTLSNAG*GADTQT
Trigger: AGTCTGTGTGTCGGCGCCCAAGCCTGCATTGGACAA...CGTCCAATCTCTTAAAAATAAATGTACAGCTACTCTTGCTTTCTGAGCCAGATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp AATCTGGCTCAGAAAGCAAGAGTAGCTGTACATTTATTTTTAAGAGATTGGACGTGTGTACTCCCAGGGTaGTCCAATGCAGGCTTGGGC +
Preference number: 5 (lower is better)
Translates to: NLAQKARVAVHLFLRDWTCVLPG*SNAGLG
Trigger: GCCCAAGCCTGCATTGGACAACCCTGGGAGTACACA...CGTCCAATCTCTTAAAAATAAATGTACAGCTACTCTTGCTTTCTGAGCCAGATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TTAGCTGCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCAAGATCTAGAAATTCTTaGGGACTCTCTGGCCTCTCC +
Preference number: 5 (lower is better)
Translates to: LAAHESLKAPLQPYMYPPRSRNS*GLSGLS
Trigger: GGAGAGGCCAGAGAGTCCCAAAGAATTTCTAGATCT...TGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TTCTGTAAACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCCTCTCTGGAGGGAGTaGTATGGAACTCCTACTCTG +
Preference number: 5 (lower is better)
Translates to: FCKLDPAPKTLILQVVPSPLWRE*YGTPTL
Trigger: CAGAGTAGGAGTTCCATACAACTCCCTCCAGAGAGG...GGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGTTTACAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS TCA 90 bp TCTTTGATGTCTTATAAGTGTCTGCAGAGTCTGAAGCATCACTTTTaGGTTGGGAGTCCTCTGTTTCCCTTTCTTGTGGTGAGCTTTGCC +
Preference number: 5 (lower is better)
Translates to: SLMSYKCLQSLKHHF*VGSPLFPFLVVSFA
Trigger: GGCAAAGCTCACCACAAGAAAGGGAAACAGAGGACTCCCAACTCAAAAGTGATGCTTCAGACTCTGCAGACACTTATAAGACATCAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS-3UTR CAA 90 bp ACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCCAAATATACGCAGAGGAAGGTCTaGGAAACTAGCTTCTCTCAG +
Preference number: 5 (lower is better)
Translates to: TGPSSKNINTTSSPFPKYTQRKV*ETSFSQ
Trigger: CTGAGAGAAGCTAGTTTCCAAGACCTTCCTCTGCGT...ATATTTGGGGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TTAGCTGCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCAAGACATAAACCTATGTaGCAACTCTGGCTTTGTGCG +
Preference number: 5 (lower is better)
Translates to: LAAHESLKAPLQPYMYPPRHKPM*QLWLCA
Trigger: CGCACAAAGCCAGAGTTGCAACATAGGTTTATGTCT...TGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TTCTGTAAACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCGATCTTCCACTGCCTaGACCTTTTCCTCCATTTCC +
Preference number: 5 (lower is better)
Translates to: FCKLDPAPKTLILQVVPSRSSTA*TFSSIS
Trigger: GGAAATGGAGGAAAAGGTCAAGGCAGTGGAAGATCG...GGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGTTTACAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp AACAAGAGTCTTGGGATTTGGAGAAGCCAGCAAGAACTCCAGGTCCATTGCTCTATACATGTTTCCATCTaGACTGGGACAATTCATCTG +
Preference number: 5 (lower is better)
Translates to: NKSLGIWRSQQELQVHCSIHVSI*TGTIHL
Trigger: CAGATGAATTGTCCCAGTCAAGATGGAAACATGTAT...AGAGCAATGGACCTGGAGTTCTTGCTGGCTTCTCCAAATCCCAAGACTCTTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp CATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCACCCAAGTTTTCTGAAGCATCACTTTaGAGTTGGGAGTCCTCTGTT +
Preference number: 5 (lower is better)
Translates to: HESLKAPLQPYMYPPPKFSEASL*SWESSV
Trigger: AACAGAGGACTCCCAACTCAAAAGTGATGCTTCAGA...AAACTTGGGTGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TTTGTCAGCTGTGCAGATGATCCCAGCTATAGGCCAGCCAGTCATCTAAAGAGTCTACATCCATTTGAGTaGGAGAAGTTAAGGCAGTAT +
Preference number: 5 (lower is better)
Translates to: FVSCADDPSYRPASHLKSLHPFE*EKLRQY
Trigger: ATACTGCCTTAACTTCTCCAACTCAAATGGATGTAG...ACTCTTTAGATGACTGGCTGGCCTATAGCTGGGATCATCTGCACAGCTGACAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 90 bp TCTGTGTCTCCATCTTCACCAGGAAAATGTTTTGTCATGGCCCGATaGAAACACCGCTCTAAATTGTCAGACATCTTGGTATACTCACTA +
Preference number: 5 (lower is better)
Translates to: SVSPSSPGKCFVMAR*KHRSKLSDILVYSL
Trigger: TAGTGAGTATACCAAGATGTCTGACAATTTAGAGCGGTGTTTCCATCGGGCCATGACAAAACATTTTCCTGGTGAAGATGGAGACACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp CAACCATACAGCAAACAAATGTCATTGGACAATAACACCATGGCCAGTCAAGAGTCTGCATCCAGACCCTaGAGAAGATCAAAGACATCA +
Preference number: 5 (lower is better)
Translates to: QPYSKQMSLDNNTMASQESASRP*RRSKTS
Trigger: TGATGTCTTTGATCTTCTCAAGGGTCTGGATGCAGA...CTCTTGACTGGCCATGGTGTTATTGTCCAATGACATTTGTTTGCTGTATGGTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TTCTGTAAACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCGGAGTTTCCTCTAGCTaGATGGATTTGATGGACAGG +
Preference number: 5 (lower is better)
Translates to: FCKLDPAPKTLILQVVPSGVSSS*MDLMDR
Trigger: CCTGTCCATCAAATCCATCAAGCTAGAGGAAACTCC...GGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGTTTACAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp ACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCCAAATATAATTCAAAGAGGTCCTaGGTCTTCTTCCCTTCCCTC +
Preference number: 5 (lower is better)
Translates to: TGPSSKNINTTSSPFPKYNSKRS*VFFPSL
Trigger: GAGGGAAGGGAAGAAGACCAAGGACCTCTTTGAATT...ATATTTGGGGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TTCTGTAAACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCACCAGGAAAATGTTTaGTCATGGCCCGATGGAAAC +
Preference number: 5 (lower is better)
Translates to: FCKLDPAPKTLILQVVPSHQENV*SWPDGN
Trigger: GTTTCCATCGGGCCATGACAAAACATTTTCCTGGTG...GGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGTTTACAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp GCTGCCCACATTCCAGAAATCCTCCAGACTGAACACTCACTGATACACTCTTGTAGGTGTTCTTGTTCTTaGATGTCTTATAAGTGTCTG +
Preference number: 5 (lower is better)
Translates to: AAHIPEILQTEHSLIHSCRCSCS*MSYKCL
Trigger: CAGACACTTATAAGACATCAAAGAACAAGAACACCT...ACAAGAGTGTATCAGTGAGTGTTCAGTCTGGAGGATTTCTGGAATGTGGGCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS TCA 90 bp AATCCTTGTGAGCCTTCACCACATCTAGAACTTTATACATGGCTGTaGAATCGTCATCCAATTCAAAGAGGTCCTTGGTCTTCTTCCCTT +
Preference number: 5 (lower is better)
Translates to: NPCEPSPHLELYTWL*NRHPIQRGPWSSSL
Trigger: AAGGGAAGAAGACCAAGGACCTCTTTGAATTGGATGACGATTTCACAGCCATGTATAAAGTTCTAGATGTGGTGAAGGCTCACAAGGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000129803.2
CDS CCA 90 bp ATTCTTCATCTGTGTCTCCATCTTCACCAGGAAAATGTTTTGTCATaGCCCGATGGAAACACCGCTCTAAATTGTCAGACATCTTGGTAT +
Preference number: 5 (lower is better)
Translates to: ILHLCLHLHQENVLS*PDGNTALNCQTSWY
Trigger: ATACCAAGATGTCTGACAATTTAGAGCGGTGTTTCCATCGGGCCATGACAAAACATTTTCCTGGTGAAGATGGAGACACAGATGAAGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp TTAGCTGCTCATGAAAGTTTAAAAGCACCACTCCAGCCTTACATGTACCCTCCAATACATGTTTCCATCTaGACTGGGACAATTCATCTG +
Preference number: 5 (lower is better)
Translates to: LAAHESLKAPLQPYMYPPIHVSI*TGTIHL
Trigger: CAGATGAATTGTCCCAGTCAAGATGGAAACATGTAT...TGGAGGGTACATGTAAGGCTGGAGTGGTGCTTTTAAACTTTCATGAGCAGCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTATCTGCATCCAGACCCTaGAGAAGATCAAAGACATCA +
Preference number: 5 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLSASRP*RRSKTS
Trigger: TGATGTCTTTGATCTTCTCAAGGGTCTGGATGCAGA...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp CAAGTAGTCCCTTCCCCAAATATATACCTGAGATTAGCTGCTCATGAAAGTTTAAGACATAAACCTATGTaGCAACTCTGGCTTTGTGCG +
Preference number: 5 (lower is better)
Translates to: QVVPSPNIYLRLAAHESLRHKPM*QLWLCA
Trigger: CGCACAAAGCCAGAGTTGCAACATAGGTTTATGTCT...TAAACTTTCATGAGCAGCTAATCTCAGGTATATATTTGGGGAAGGGACTACTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 90 bp TTGTGTCCATCAGGAGGAACAACTTTAGCAGTCACTACATCCATTTaGGTTGGAGAAGTTAAGGCAGTATTTAATGTTTCACAACCTTGC +
Preference number: 5 (lower is better)
Translates to: LCPSGGTTLAVTTSI*VGEVKAVFNVSQPC
Trigger: GCAAGGTTGTGAAACATTAAATACTGCCTTAACTTCTCCAACTCAAATGGATGTAGTGACTGCTAAAGTTGTTCCTCCTGATGGACACAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS-3UTR CAA 90 bp ACTGGACCCAGCTCCAAAAACATTAATACTACAAGTAGTCCCTTCCCCAAATATAAACACCGCTCTAAATaGTCAGACATCTTGGTATAC +
Preference number: 5 (lower is better)
Translates to: TGPSSKNINTTSSPFPKYKHRSK*SDILVY
Trigger: GTATACCAAGATGTCTGACAATTTAGAGCGGTGTTT...ATATTTGGGGAAGGGACTACTTGTAGTATTAATGTTTTTGGAGCTGGGTCCAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 90 bp TCTTGGTATACTCACTACTGTCACCATTGTATTTTCGGCAATTTCTaGACATGGTCTTCATGTCATTTACAAATTCCTCCTTGTTACAAT +
Preference number: 5 (lower is better)
Translates to: SWYTHYCHHCIFGNF*TWSSCHLQIPPCYN
Trigger: ATTGTAACAAGGAGGAATTTGTAAATGACATGAAGACCATGTTCAGAAATTGCCGAAAATACAATGGTGACAGTAGTGAGTATACCAAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 72 bp GGCAGGCGGAACGCCGTGCGAAAGAGCGAGCAGAAGTaGGCGATGGCCGGGACTTCCCACCAGGAGCGGAGC +
Preference number: 6 (lower is better)
Translates to: GRRNAVRKSEQK*AMAGTSHQERS
Trigger: GCTCCGCTCCTGGTGGGAAGTCCCGGCCATCGCGCACTTCTGCTCGCTCTTTCGCACGGCGTTCCGCCTGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp GGAACGCCGTGCGAAAGAGCGAGCAGAAGTGCGCGATaGCCGGGACTTCCCACCAGGAGCGGAGCTCGCCCA +
Preference number: 6 (lower is better)
Translates to: GTPCERASRSAR*PGLPTRSGARP
Trigger: TGGGCGAGCTCCGCTCCTGGTGGGAAGTCCCGGCCATCGCGCACTTCTGCTCGCTCTTTCGCACGGCGTTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 72 bp ACTCCTCGATCTCGAAGTCGGGCAGGCGGAACGCCGTaGGAAAGAGCGAGCAGAAGTGCGCGATGGCCGGGA +
Preference number: 6 (lower is better)
Translates to: TPRSRSRAGGTP*ERASRSARWPG
Trigger: TCCCGGCCATCGCGCACTTCTGCTCGCTCTTTCGCACGGCGTTCCGCCTGCCCGACTTCGAGATCGAGGAGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 72 bp CCCACCTCTGGAGGGAGTTGTATGGAACTCCTACTCTaGTCGTCCCCTGAGGAGGCAGCTCGGCGTGCCGGG +
Preference number: 6 (lower is better)
Translates to: PTSGGSCMELLL*SSPEEAARRAG
Trigger: CCCGGCACGCCGAGCTGCCTCCTCAGGGGACGATCAGAGTAGGAGTTCCATACAACTCCCTCCAGAGGTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100993.9
CDS TCA 72 bp GGCCTCTCTGGAGGGAGTTGTATGGAACTCCTACTCTaGTCGTCCCCTGAGGAGGCAGCTCGGCGTGCCGGG +
Preference number: 6 (lower is better)
Translates to: GLSGGSCMELLL*SSPEEAARRAG
Trigger: CCCGGCACGCCGAGCTGCCTCCTCAGGGGACGATCAGAGTAGGAGTTCCATACAACTCCCTCCAGAGAGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS GCA 72 bp GAGGGCCTGGGAGGGCCCTCTGAATCGAGGACTTGGTaGTGGAGTTGGAGGTGGCTGCAAACGATGTCCAGC +
Preference number: 6 (lower is better)
Translates to: EGLGGPSESRTW*WSWRWLQTMSS
Trigger: GCTGGACATCGTTTGCAGCCACCTCCAACTCCAGCACCAAGTCCTCGATTCAGAGGGCCCTCCCAGGCCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS CCA 72 bp GGTGCTGCTGGCCTCATCTGGTTTAAAGGGGGTGCGTaGCTAGGCACCCTACCACAGTGCAGGGGGCGAGAA +
Preference number: 6 (lower is better)
Translates to: GAAGLIWFKGGA*LGTLPQCRGRE
Trigger: TTCTCGCCCCCTGCACTGTGGTAGGGTGCCTAGCCACGCACCCCCTTTAAACCAGATGAGGCCAGCAGCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000100993.9
CDS TCA 72 bp GCAGGCTTGGGCGCCGACACACAGACTGAAGCTGAATaGGCTACCTGCGGAAAGGGACCAGGTAACTGGGGA +
Preference number: 6 (lower is better)
Translates to: AGLGADTQTEAE*ATCGKGPGNWG
Trigger: TCCCCAGTTACCTGGTCCCTTTCCGCAGGTAGCTCATTCAGCTTCAGTCTGTGTGTCGGCGCCCAAGCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS CCA 72 bp GAGGTGGATGGGCAGGCACAGGGGATGGGTATGCCCTaGGCTGAAAATGACTGGCTGATCGCTGAGGAGTGT +
Preference number: 6 (lower is better)
Translates to: EVDGQAQGMGMP*AENDWLIAEEC
Trigger: ACACTCCTCAGCGATCAGCCAGTCATTTTCAGCCCAGGGCATACCCATCCCCTGTGCCTGCCCATCCACCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp GACAGCAGTAGAGGGAATCCTCTGGAGAGAGGCCATTaGGTTGGGTGGCTACTGGATGGGGAGGTGGATGGG +
Preference number: 6 (lower is better)
Translates to: DSSRGNPLERGH*VGWLLDGEVDG
Trigger: CCCATCCACCTCCCCATCCAGTAGCCACCCAACCCAATGGCCTCTCTCCAGAGGATTCCCTCTACTGCTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp GGCCATGTGATGTGCCCACCTCTGGAGGGAGTTGTATaGAACTCCTACTCTGATCGTCCCCTGAGGAGGCAG +
Preference number: 6 (lower is better)
Translates to: GHVMCPPLEGVV*NSYSDRPLRRQ
Trigger: CTGCCTCCTCAGGGGACGATCAGAGTAGGAGTTCCATACAACTCCCTCCAGAGGTGGGCACATCACATGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100993.9
CDS CCA 72 bp CACCTGGGGGACAGACTCGGGAGGAGAGCTGCTGCATaGCAATCATTTCAGGGCTGTCCATCATGGATTCCC +
Preference number: 6 (lower is better)
Translates to: HLGDRLGRRAAA*QSFQGCPSWIP
Trigger: GGGAATCCATGATGGACAGCCCTGAAATGATTGCCATGCAGCAGCTCTCCTCCCGAGTCTGTCCCCCAGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS CCA 72 bp TTCCTGGTGCTGCTGGCCTCTCTGGAGGGAGTTGTATaGAACTCCTACTCTGATCGTCCCCTGAGGAGGCAG +
Preference number: 6 (lower is better)
Translates to: FLVLLASLEGVV*NSYSDRPLRRQ
Trigger: CTGCCTCCTCAGGGGACGATCAGAGTAGGAGTTCCATACAACTCCCTCCAGAGAGGCCAGCAGCACCAGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112686.8
CDS CAA 72 bp TTCAGGCAGGAAGTCCTCGCTAAGGAGCTTGTAGAGTaGCCGCTCTCGGAGAGAGGTCCGCTCTCGGAAGCT +
Preference number: 6 (lower is better)
Translates to: FRQEVLAKELVE*PLSERGPLSEA
Trigger: AGCTTCCGAGAGCGGACCTCTCTCCGAGAGCGGCAACTCTACAAGCTCCTTAGCGAGGACTTCCTGCCTGAA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000129803.2
CDS CAA 90 bp TCCTCGGGCTCGTGTGTTTCAGTCATCTCCTGTGTACTCCCAGGGTaGTCCAATGCAGGCTTGGGCGCCGACACACAGACTGAAGCTGAA +
Preference number: 6 (lower is better)
Translates to: SSGSCVSVISCVLPG*SNAGLGADTQTEAE
Trigger: TTCAGCTTCAGTCTGTGTGTCGGCGCCCAAGCCTGCATTGGACAACCCTGGGAGTACACAGGAGATGACTGAAACACACGAGCCCGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS TCA 72 bp AGGGGATGGGTATGCCCTGGGCTGAAAATGACTGGCTaGTCGCTGAGGAGTGTATGGAGACCCTGTCTGCAG +
Preference number: 6 (lower is better)
Translates to: RGWVCPGLKMTG*SLRSVWRPCLQ
Trigger: CTGCAGACAGGGTCTCCATACACTCCTCAGCGATCAGCCAGTCATTTTCAGCCCAGGGCATACCCATCCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 72 bp AGTGCAGGGGGCGAGAAAAGCCTTGGCCATGTGATGTaGCCACCTCTGGAGGGAGTTGTATGGAACTCCTAC +
Preference number: 6 (lower is better)
Translates to: SAGGEKSLGHVM*PPLEGVVWNSY
Trigger: GTAGGAGTTCCATACAACTCCCTCCAGAGGTGGGCACATCACATGGCCAAGGCTTTTCTCGCCCCCTGCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100993.9
CDS CCA 72 bp AGAGAGCCAAATGTTCCTGGTGCTGCTGGCCTCATCTaGTTTAAAGGGGGTGCGTGGCTAGGCACCCTACCA +
Preference number: 6 (lower is better)
Translates to: REPNVPGAAGLI*FKGGAWLGTLP
Trigger: TGGTAGGGTGCCTAGCCACGCACCCCCTTTAAACCAGATGAGGCCAGCAGCACCAGGAACATTTGGCTCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100993.9
CDS CCA 72 bp ATGACCGGGAGGAATTTCAGAGCTTTCAGGAAAGTCTaGGGGTCGGGCTGGAGTCCCACCATGCCTAGAAGG +
Preference number: 6 (lower is better)
Translates to: MTGRNFRAFRKV*GSGWSPTMPRR
Trigger: CCTTCTAGGCATGGTGGGACTCCAGCCCGACCCCCAGACTTTCCTGAAAGCTCTGAAATTCCTCCCGGTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp CCCTCTGAATCGAGGACTTGGTGCTGGAGTTGGAGGTaGCTGCAAACGATGTCCAGCAGACTTACAGGGTGG +
Preference number: 6 (lower is better)
Translates to: PSESRTWCWSWR*LQTMSSRLTGW
Trigger: CCACCCTGTAAGTCTGCTGGACATCGTTTGCAGCCACCTCCAACTCCAGCACCAAGTCCTCGATTCAGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS CCA 72 bp GCACAGGGGATGGGTATGCCCTGGGCTGAAAATGACTaGCTGATCGCTGAGGAGTGTATGGAGACCCTGTCT +
Preference number: 6 (lower is better)
Translates to: AQGMGMPWAEND*LIAEECMETLS
Trigger: AGACAGGGTCTCCATACACTCCTCAGCGATCAGCCAGTCATTTTCAGCCCAGGGCATACCCATCCCCTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CAA 90 bp GTTGCAAATTTCAGGCAGGAAGTCCTCGCTAAGGAGCTTGTAGAGTaGCCGCTCTCGGAGAGAGGTCCGCTCTCGGAAGCTCTCAGTGAC +
Preference number: 6 (lower is better)
Translates to: VANFRQEVLAKELVE*PLSERGPLSEALSD
Trigger: GTCACTGAGAGCTTCCGAGAGCGGACCTCTCTCCGAGAGCGGCAACTCTACAAGCTCCTTAGCGAGGACTTCCTGCCTGAAATTTGCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000129803.2
CDS TCA 72 bp TGCCTGGTACAGCTGGCTTGCAAGGGAGGTGCTGGGTaGGGTAGCTGTTTGAGGTATACCCCCTCTGAAGAA +
Preference number: 6 (lower is better)
Translates to: CLVQLACKGGAG*GSCLRYTPSEE
Trigger: TTCTTCAGAGGGGGTATACCTCAAACAGCTACCTCACCCAGCACCTCCCTTGCAAGCCAGCTGTACCAGGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS GCA 72 bp ATTCCAACTGGAGCCTGTATAGCAAAGGGTGGGTGTTaGAAGGGCTCTCCTGGGGGAGCCTCTGGGATTCTA +
Preference number: 6 (lower is better)
Translates to: IPTGACIAKGGC*KGSPGGASGIL
Trigger: TAGAATCCCAGAGGCTCCCCCAGGAGAGCCCTTGCAACACCCACCCTTTGCTATACAGGCTCCAGTTGGAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 72 bp TCAGGAAAGTCTGGGGGTCGGGCTGGAGTCCCACCATaGCTAGAAGGAATAAATCCTGCCTGGAATGGAGCT +
Preference number: 6 (lower is better)
Translates to: SGKSGGRAGVPP*LEGINPAWNGA
Trigger: AGCTCCATTCCAGGCAGGATTTATTCCTTCTAGGCATGGTGGGACTCCAGCCCGACCCCCAGACTTTCCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 72 bp GCAGGTGCCGGGGTCTTTGGGAATAAGGACTGTGACTaGACTGGATGCATCTGCAATCCTGGTGGTCTGTGT +
Preference number: 6 (lower is better)
Translates to: AGAGVFGNKDCD*TGCICNPGGLC
Trigger: ACACAGACCACCAGGATTGCAGATGCATCCAGTGCAGTCACAGTCCTTATTCCCAAAGACCCCGGCACCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp CTGGTGGCTGTTTCCTGCTCGACCCTTCTGTGTCTCTaGAGCGCGTCCAAACATGGCTTCCACTACTTCTAC +
Preference number: 6 (lower is better)
Translates to: LVAVSCSTLLCL*SASKHGFHYFY
Trigger: GTAGAAGTAGTGGAAGCCATGTTTGGACGCGCTCCAGAGACACAGAAGGGTCGAGCAGGAAACAGCCACCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp GTTACTAATTCCAACTGGAGCCTGTATAGCAAAGGGTaGGTGTTGCAAGGGCTCTCCTGGGGGAGCCTCTGG +
Preference number: 6 (lower is better)
Translates to: VTNSNWSLYSKG*VLQGLSWGSLW
Trigger: CCAGAGGCTCCCCCAGGAGAGCCCTTGCAACACCCACCCTTTGCTATACAGGCTCCAGTTGGAATTAGTAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp AGGTGGCTGCAAACGATGTCCAGCAGACTTACAGGGTaGCTGCATATACCCCGAGGAAGGAACTCCATGAGG +
Preference number: 6 (lower is better)
Translates to: RWLQTMSSRLTG*LHIPRGRNSMR
Trigger: CCTCATGGAGTTCCTTCCTCGGGGTATATGCAGCCACCCTGTAAGTCTGCTGGACATCGTTTGCAGCCACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS CCA 72 bp TCTCCTGTGTACTCCCAGGGTTGTCCAATGCAGGCTTaGGCGCCGACACACAGACTGAAGCTGAATGAGCTA +
Preference number: 6 (lower is better)
Translates to: SPVYSQGCPMQA*APTHRLKLNEL
Trigger: TAGCTCATTCAGCTTCAGTCTGTGTGTCGGCGCCCAAGCCTGCATTGGACAACCCTGGGAGTACACAGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS CAA 72 bp AATTCCAACTGGAGCCTGTATAGCAAAGGGTGGGTGTaGCAAGGGCTCTCCTGGGGGAGCCTCTGGGATTCT +
Preference number: 6 (lower is better)
Translates to: NSNWSLYSKGWV*QGLSWGSLWDS
Trigger: AGAATCCCAGAGGCTCCCCCAGGAGAGCCCTTGCAACACCCACCCTTTGCTATACAGGCTCCAGTTGGAATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CAA 72 bp TCGTGTGTTTCAGTCATCTCCTGTGTACTCCCAGGGTaGTCCAATGCAGGCTTGGGCGCCGACACACAGACT +
Preference number: 6 (lower is better)
Translates to: SCVSVISCVLPG*SNAGLGADTQT
Trigger: AGTCTGTGTGTCGGCGCCCAAGCCTGCATTGGACAACCCTGGGAGTACACAGGAGATGACTGAAACACACGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS CAA 90 bp TATGCGGTGGCAACTGTTCTGGTGATGCTGCAGGTGCCGGGGTCTTaGGGAATAAGGACTGTGACTGCACTGGATGCATCTGCAATCCTG +
Preference number: 6 (lower is better)
Translates to: YAVATVLVMLQVPGS*GIRTVTALDASAIL
Trigger: CAGGATTGCAGATGCATCCAGTGCAGTCACAGTCCTTATTCCCAAAGACCCCGGCACCTGCAGCATCACCAGAACAGTTGCCACCGCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 72 bp ATGATTTTCCCCCATTCTCCACTGGTGGCTGTTTCCTaGTCGACCCTTCTGTGTCTCTGGAGCGCGTCCAAA +
Preference number: 6 (lower is better)
Translates to: MIFPHSPLVAVS*STLLCLWSASK
Trigger: TTTGGACGCGCTCCAGAGACACAGAAGGGTCGAGCAGGAAACAGCCACCAGTGGAGAATGGGGGAAAATCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp TGCTGCTTTCTCTTCATGTCCAGGCAAAGGCTCTGCTaGGTCTTCCTCGGGCTCGTGTGTTTCAGTCATCTC +
Preference number: 6 (lower is better)
Translates to: CCFLFMSRQRLC*VFLGLVCFSHL
Trigger: GAGATGACTGAAACACACGAGCCCGAGGAAGACCCAGCAGAGCCTTTGCCTGGACATGAAGAGAAAGCAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp TTTCCCTTTCTTGTGGTGAGCTTTGCCTGGTACAGCTaGCTTGCAAGGGAGGTGCTGGGTGAGGTAGCTGTT +
Preference number: 6 (lower is better)
Translates to: FPFLVVSFAWYS*LAREVLGEVAV
Trigger: AACAGCTACCTCACCCAGCACCTCCCTTGCAAGCCAGCTGTACCAGGCAAAGCTCACCACAAGAAAGGGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS CCA 72 bp CACTATGGAGAGGTCCCTCAAACAGCCTTGCACAGCTaGGCTGCTGTAGCTATTGTCCAAAGGCCAGGTGTT +
Preference number: 6 (lower is better)
Translates to: HYGEVPQTALHS*AAVAIVQRPGV
Trigger: AACACCTGGCCTTTGGACAATAGCTACAGCAGCCCAGCTGTGCAAGGCTGTTTGAGGGACCTCTCCATAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS CCA 72 bp GCTTGCTGCTTTCTCTTCATGTCCAGGCAAAGGCTCTaGGTCTTCCTCGGGCTCGTGTGTTTCAGTCATCTC +
Preference number: 6 (lower is better)
Translates to: ACCFLFMSRQRL*VFLGLVCFSHL
Trigger: GAGATGACTGAAACACACGAGCCCGAGGAAGACCCAGAGCCTTTGCCTGGACATGAAGAGAAAGCAGCAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143563.2
CDS TCA 72 bp CTAGAGGAGCCATGTAAGTTGGTGGGATCTGATCCTTaGAGAGAGCCAAATGTTCCTGGTGCTGCTGGCCTC +
Preference number: 6 (lower is better)
Translates to: LEEPCKLVGSDP*REPNVPGAAGL
Trigger: GAGGCCAGCAGCACCAGGAACATTTGGCTCTCTTCAAGGATCAGATCCCACCAACTTACATGGCTCCTCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 72 bp GGACCATTAGCCTGGAAACCCCTGGGAGGAAAGGACTaGGGTTGTGATCCTGAGGACTTTCCTCCCATCATA +
Preference number: 6 (lower is better)
Translates to: GPLAWKPLGGKD*GCDPEDFPPII
Trigger: TATGATGGGAGGAAAGTCCTCAGGATCACAACCTCAGTCCTTTCCTCCCAGGGGTTTCCAGGCTAATGGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 72 bp TTCACAACCTTGCAGACTAGACAGGACATTCTTCTCTaGAAAGAGGGAGCGTGGAGGGTGACTTCCTGGGGG +
Preference number: 6 (lower is better)
Translates to: FTTLQTRQDILL*KEGAWRVTSWG
Trigger: CCCCCAGGAAGTCACCCTCCACGCTCCCTCTTTTCAGAGAAGAATGTCCTGTCTAGTCTGCAAGGTTGTGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp GGACAGGTGGTCAGACATAAACCTATGTTGCAACTCTaGCTTTGTGCGCTGTGGACGTTTTCCCTTCTGGGC +
Preference number: 6 (lower is better)
Translates to: GQVVRHKPMLQL*LCALWTFSLLG
Trigger: GCCCAGAAGGGAAAACGTCCACAGCGCACAAAGCCAGAGTTGCAACATAGGTTTATGTCTGACCACCTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp CTCGACCCTTCTGTGTCTCTGGAGCGCGTCCAAACATaGCTTCCACTACTTCTACCAGACCGACTTCTTCTT +
Preference number: 6 (lower is better)
Translates to: LDPSVSLERVQT*LPLLLPDRLLL
Trigger: AAGAAGAAGTCGGTCTGGTAGAAGTAGTGGAAGCCATGTTTGGACGCGCTCCAGAGACACAGAAGGGTCGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CAA 72 bp GTGCGCTGTGGACGTTTTCCCTTCTGGGCAATCATGTaGCAAATTTCAGGCAGGAAGTCCTCGCTAAGGAGC +
Preference number: 6 (lower is better)
Translates to: VRCGRFPFWAIM*QISGRKSSLRS
Trigger: GCTCCTTAGCGAGGACTTCCTGCCTGAAATTTGCAACATGATTGCCCAGAAGGGAAAACGTCCACAGCGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 72 bp GGCTGGAGTCCCACCATGCCTAGAAGGAATAAATCCTaGCTGGAATGGAGCTGGTGGATACATGTTTCCATC +
Preference number: 6 (lower is better)
Translates to: GWSPTMPRRNKS*LEWSWWIHVSI
Trigger: GATGGAAACATGTATCCACCAGCTCCATTCCAGGCAGGATTTATTCCTTCTAGGCATGGTGGGACTCCAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp AATTTCAGAGCTTTCAGGAAAGTCTGGGGGTCGGGCTaGAGTCCCACCATGCCTAGAAGGAATAAATCCTGC +
Preference number: 6 (lower is better)
Translates to: NFRAFRKVWGSG*SPTMPRRNKSC
Trigger: GCAGGATTTATTCCTTCTAGGCATGGTGGGACTCCAGCCCGACCCCCAGACTTTCCTGAAAGCTCTGAAATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp TGCCAGGCATGTATAAGGGAGAAAACTGGTTCACAGTaGCTGCCATCAAACTGGGATCTGTGCAAGGAGGTG +
Preference number: 6 (lower is better)
Translates to: CQACIREKTGSQ*LPSNWDLCKEV
Trigger: CACCTCCTTGCACAGATCCCAGTTTGATGGCAGCCACTGTGAACCAGTTTTCTCCCTTATACATGCCTGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS CCA 72 bp GGAGTGTATGGAGACCCTGTCTGCAGCATCACACTGTaGGGTGGGAAAGCAGATGAACCAAAAGTCATTCCT +
Preference number: 6 (lower is better)
Translates to: GVYGDPVCSITL*GGKADEPKVIP
Trigger: AGGAATGACTTTTGGTTCATCTGCTTTCCCACCCCACAGTGTGATGCTGCAGACAGGGTCTCCATACACTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CAA 90 bp ACAGAGGCGATGCAGGATCTCTACTCGAGTACGCAGAGGAAGGTCTaGGAAACTAGCTTCTCTCAGAGGATTGGGCTTTCCTTCTTCAAG +
Preference number: 6 (lower is better)
Translates to: TEAMQDLYSSTQRKV*ETSFSQRIGLSFFK
Trigger: CTTGAAGAAGGAAAGCCCAATCCTCTGAGAGAAGCTAGTTTCCAAGACCTTCCTCTGCGTACTCGAGTAGAGATCCTGCATCGCCTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 72 bp GGATGCATCTGCAATCCTGGTGGTCTGTGTACTTCTTaGAATGAGCCTCTTAATCCGCTTCCGGTACCAGTC +
Preference number: 6 (lower is better)
Translates to: GCICNPGGLCTS*NEPLNPLPVPV
Trigger: GACTGGTACCGGAAGCGGATTAAGAGGCTCATTTCAAGAAGTACACAGACCACCAGGATTGCAGATGCATCC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp TGCAGGATCTCTACTCGAGTACGCAGAGGAAGGTCTTaGAAACTAGCTTCTCTCAGAGGATTGGGCTTTCCT +
Preference number: 6 (lower is better)
Translates to: CRISTRVRRGRS*KLASLRGLGFP
Trigger: AGGAAAGCCCAATCCTCTGAGAGAAGCTAGTTTCCAAGACCTTCCTCTGCGTACTCGAGTAGAGATCCTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp TTGGAAAGGTCTGGAGCACTGAGCAGGGATCCCCGATaGTTACTAATTCCAACTGGAGCCTGTATAGCAAAG +
Preference number: 6 (lower is better)
Translates to: LERSGALSRDPR*LLIPTGACIAK
Trigger: CTTTGCTATACAGGCTCCAGTTGGAATTAGTAACCATCGGGGATCCCTGCTCAGTGCTCCAGACCTTTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp CCCACCATGCCTAGAAGGAATAAATCCTGCCTGGAATaGAGCTGGTGGATACATGTTTCCATCTTGACTGGG +
Preference number: 6 (lower is better)
Translates to: PTMPRRNKSCLE*SWWIHVSILTG
Trigger: CCCAGTCAAGATGGAAACATGTATCCACCAGCTCCATTCCAGGCAGGATTTATTCCTTCTAGGCATGGTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CAA 72 bp ATGCAGGATCTCTACTCGAGTACGCAGAGGAAGGTCTaGGAAACTAGCTTCTCTCAGAGGATTGGGCTTTCC +
Preference number: 6 (lower is better)
Translates to: MQDLYSSTQRKV*ETSFSQRIGLS
Trigger: GGAAAGCCCAATCCTCTGAGAGAAGCTAGTTTCCAAGACCTTCCTCTGCGTACTCGAGTAGAGATCCTGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CAA 72 bp TTGGTGAGCATGGGAGTTTCCTTCTGGGCAATCATGTaGCAAATTTCAGGCAGGAAGTCCTCGCTAAGGAGC +
Preference number: 6 (lower is better)
Translates to: LVSMGVSFWAIM*QISGRKSSLRS
Trigger: GCTCCTTAGCGAGGACTTCCTGCCTGAAATTTGCAACATGATTGCCCAGAAGGAAACTCCCATGCTCACCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129803.2
CDS CAA 90 bp GCTGTGGAATGTCTGAGGCGTGATATCTCTTCGCTGATAGCAGCCTaGAAGCAAGCAGGCAATCAGATCACTGATAAACTCCACGTCATC +
Preference number: 6 (lower is better)
Translates to: AVECLRRDISSLIAA*KQAGNQITDKLHVI
Trigger: GATGACGTGGAGTTTATCAGTGATCTGATTGCCTGCTTGCTTCAAGGCTGCTATCAGCGAAGAGATATCACGCCTCAGACATTCCACAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CAA 90 bp TCACTGGTTGACAGTGAGTTCTGCCGCTTGGTAGCTGCATTATGGTaGTCGAGATCTAGAAATTCTTTGGGACTCTCTGGCCTCTCCACA +
Preference number: 6 (lower is better)
Translates to: SLVDSEFCRLVAALW*SRSRNSLGLSGLST
Trigger: TGTGGAGAGGCCAGAGAGTCCCAAAGAATTTCTAGATCTCGACAACCATAATGCAGCTACCAAGCGGCAGAACTCACTGTCAACCAGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 72 bp GCCTGGAATGGAGCTGGTGGATACATGTTTCCATCTTaGCTGGGACAATTCATCTGCCCAAGCTGTAAGGAT +
Preference number: 6 (lower is better)
Translates to: AWNGAGGYMFPS*LGQFICPSCKD
Trigger: ATCCTTACAGCTTGGGCAGATGAATTGTCCCAGTCAAGATGGAAACATGTATCCACCAGCTCCATTCCAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 72 bp GATTTGATGGACAGGTGGTCAGACATAAACCTATGTTaGAACTCTGGCTTTGTGCGCTGTGGACGTTTTCCC +
Preference number: 6 (lower is better)
Translates to: DLMDRWSDINLC*NSGFVRCGRFP
Trigger: GGGAAAACGTCCACAGCGCACAAAGCCAGAGTTGCAACATAGGTTTATGTCTGACCACCTGTCCATCAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp GGAATGGAGCTGGTGGATACATGTTTCCATCTTGACTaGGACAATTCATCTGCCCAAGCTGTAAGGATGGGA +
Preference number: 6 (lower is better)
Translates to: GMELVDTCFHLD*DNSSAQAVRMG
Trigger: TCCCATCCTTACAGCTTGGGCAGATGAATTGTCCCAGTCAAGATGGAAACATGTATCCACCAGCTCCATTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CAA 72 bp GGATTTGATGGACAGGTGGTCAGACATAAACCTATGTaGCAACTCTGGCTTTGTGCGCTGTGGACGTTTTCC +
Preference number: 6 (lower is better)
Translates to: GFDGQVVRHKPM*QLWLCALWTFS
Trigger: GGAAAACGTCCACAGCGCACAAAGCCAGAGTTGCAACATAGGTTTATGTCTGACCACCTGTCCATCAAATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 72 bp CATTCGTGTCCCATAGAAGTACCAGTAGAGTGCACCTaGATTGTCTTCACCCAGAGGTTCAACTCTGAGACT +
Preference number: 6 (lower is better)
Translates to: HSCPIEVPVECT*IVFTQRFNSET
Trigger: AGTCTCAGAGTTGAACCTCTGGGTGAAGACAATTCAGGTGCACTCTACTGGTACTTCTATGGGACACGAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 72 bp TCATCCACAGGTTCCAAGAAGGGCCAGGAATCCTTGTaGGCCTTCACCACATCTAGAACTTTATACATGGCT +
Preference number: 6 (lower is better)
Translates to: SSTGSKKGQESL*AFTTSRTLYMA
Trigger: AGCCATGTATAAAGTTCTAGATGTGGTGAAGGCTCACAAGGATTCCTGGCCCTTCTTGGAACCTGTGGATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000129803.2
CDS CCA 72 bp GCCTTTCACTTTCCCTGCACAAGGAGAGTTCTCCATTaGACCTTCCTTGTACTGGGTCTTCTTTGTACATTC +
Preference number: 6 (lower is better)
Translates to: AFHFPCTRRVLH*TFLVLGLLCTF
Trigger: GAATGTACAAAGAAGACCCAGTACAAGGAAGGTCCAATGGAGAACTCTCCTTGTGCAGGGAAAGTGAAAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp GAGTATTCTATGCCAGGCATGTATAAGGGAGAAAACTaGTTCACAGTGGCTGCCATCAAACTGGGATCTGTG +
Preference number: 6 (lower is better)
Translates to: EYSMPGMYKGEN*FTVAAIKLGSV
Trigger: CACAGATCCCAGTTTGATGGCAGCCACTGTGAACCAGTTTTCTCCCTTATACATGCCTGGCATAGAATACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS CAA 72 bp TGTCTGAGGCGTGATATCTCTTCGCTGATAGCAGCCTaGAAGCAAGCAGGCAATCAGATCACTGATAAACTC +
Preference number: 6 (lower is better)
Translates to: CLRRDISSLIAA*KQAGNQITDKL
Trigger: GAGTTTATCAGTGATCTGATTGCCTGCTTGCTTCAAGGCTGCTATCAGCGAAGAGATATCACGCCTCAGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 72 bp ATTGTCTTCACCCAGAGGTTCAACTCTGAGACTGTCTaGATCCAGACCCTTGAGAAGATCAAAGACATCATC +
Preference number: 6 (lower is better)
Translates to: IVFTQRFNSETV*IQTLEKIKDII
Trigger: GATGATGTCTTTGATCTTCTCAAGGGTCTGGATGCAGACAGTCTCAGAGTTGAACCTCTGGGTGAAGACAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp GCACAAGGAGAGTTCTCCATTGGACCTTCCTTGTACTaGGTCTTCTTTGTACATTCGTGTCCCATAGAAGTA +
Preference number: 6 (lower is better)
Translates to: AQGEFSIGPSLY*VFFVHSCPIEV
Trigger: TACTTCTATGGGACACGAATGTACAAAGAAGACCCAGTACAAGGAAGGTCCAATGGAGAACTCTCCTTGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp CATAAACCTATGTTGCAACTCTGGCTTTGTGCGCTGTaGACGTTTTCCCTTCTGGGCAATCATGTTGCAAAT +
Preference number: 6 (lower is better)
Translates to: HKPMLQLWLCAL*TFSLLGNHVAN
Trigger: ATTTGCAACATGATTGCCCAGAAGGGAAAACGTCCACAGCGCACAAAGCCAGAGTTGCAACATAGGTTTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp CTGTGTCTCCATCTTCACCAGGAAAATGTTTTGTCATaGCCCGATGGAAACACCGCTCTAAATTGTCAGACA +
Preference number: 6 (lower is better)
Translates to: LCLHLHQENVLS*PDGNTALNCQT
Trigger: TGTCTGACAATTTAGAGCGGTGTTTCCATCGGGCCATGACAAAACATTTTCCTGGTGAAGATGGAGACACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp GTTGACAGTGAGTTCTGCCGCTTGGTAGCTGCATTATaGTTGTCGAGATCTAGAAATTCTTTGGGACTCTCT +
Preference number: 6 (lower is better)
Translates to: VDSEFCRLVAAL*LSRSRNSLGLS
Trigger: AGAGAGTCCCAAAGAATTTCTAGATCTCGACAACCATAATGCAGCTACCAAGCGGCAGAACTCACTGTCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CAA 72 bp TGCCTTTCACTTTCCCTGCACAAGGAGAGTTCTCCATaGGACCTTCCTTGTACTGGGTCTTCTTTGTACATT +
Preference number: 6 (lower is better)
Translates to: CLSLSLHKESSP*DLPCTGSSLYI
Trigger: AATGTACAAAGAAGACCCAGTACAAGGAAGGTCCAATGGAGAACTCTCCTTGTGCAGGGAAAGTGAAAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CAA 72 bp ATGGCTGTGAAATCGTCATCCAATTCAAAGAGGTCCTaGGTCTTCTTCCCTTCCCTCATAGGAGAATTCAGG +
Preference number: 6 (lower is better)
Translates to: MAVKSSSNSKRS*VFFPSLIGEFR
Trigger: CCTGAATTCTCCTATGAGGGAAGGGAAGAAGACCAAGGACCTCTTTGAATTGGATGACGATTTCACAGCCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000129803.2
CDS CAA 90 bp GGCCTCTCCACAGATTCATCCATCTTTTCTTCTTCTGGACCAGAATaGTGTCCATCAGGAGGAACAACTTTAGCAGTCACTACATCCATT +
Preference number: 6 (lower is better)
Translates to: GLSTDSSIFSSSGPE*CPSGGTTLAVTTSI
Trigger: AATGGATGTAGTGACTGCTAAAGTTGTTCCTCCTGATGGACACAATTCTGGTCCAGAAGAAGAAAAGATGGATGAATCTGTGGAGAGGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 72 bp TCTTATAAGTGTCTGCAGAGTCTGAAGCATCACTTTTaGGTTGGGAGTCCTCTGTTTCCCTTTCTTGTGGTG +
Preference number: 6 (lower is better)
Translates to: SYKCLQSLKHHF*VGSPLFPFLVV
Trigger: CACCACAAGAAAGGGAAACAGAGGACTCCCAACTCAAAAGTGATGCTTCAGACTCTGCAGACACTTATAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000143563.2
CDS CCA 72 bp GGAGTTTCCTCTAGCTTGATGGATTTGATGGACAGGTaGTCAGACATAAACCTATGTTGCAACTCTGGCTTT +
Preference number: 6 (lower is better)
Translates to: GVSSSLMDLMDR*SDINLCCNSGF
Trigger: AAAGCCAGAGTTGCAACATAGGTTTATGTCTGACCACCTGTCCATCAAATCCATCAAGCTAGAGGAAACTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp CCCGATGGAAACACCGCTCTAAATTGTCAGACATCTTaGTATACTCACTACTGTCACCATTGTATTTTCGGC +
Preference number: 6 (lower is better)
Translates to: PDGNTALNCQTS*YTHYCHHCIFG
Trigger: GCCGAAAATACAATGGTGACAGTAGTGAGTATACCAAGATGTCTGACAATTTAGAGCGGTGTTTCCATCGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp CCATCTTCACCAGGAAAATGTTTTGTCATGGCCCGATaGAAACACCGCTCTAAATTGTCAGACATCTTGGTA +
Preference number: 6 (lower is better)
Translates to: PSSPGKCFVMAR*KHRSKLSDILV
Trigger: TACCAAGATGTCTGACAATTTAGAGCGGTGTTTCCATCGGGCCATGACAAAACATTTTCCTGGTGAAGATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp ATGCCTAGAAGGAATAAATCCTGCCTGGAATGGAGCTaGTGGATACATGTTTCCATCTTGACTGGGACAATT +
Preference number: 6 (lower is better)
Translates to: MPRRNKSCLEWS*WIHVSILTGTI
Trigger: AATTGTCCCAGTCAAGATGGAAACATGTATCCACCAGCTCCATTCCAGGCAGGATTTATTCCTTCTAGGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp TGGCCTCTCCACAGATTCATCCATCTTTTCTTCTTCTaGACCAGAATTGTGTCCATCAGGAGGAACAACTTT +
Preference number: 6 (lower is better)
Translates to: WPLHRFIHLFFF*TRIVSIRRNNF
Trigger: AAAGTTGTTCCTCCTGATGGACACAATTCTGGTCCAGAAGAAGAAAAGATGGATGAATCTGTGGAGAGGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CCA 72 bp TGTTTTTCTATCTTGGTGAGCATGGGAGTTTCCTTCTaGGCAATCATGTTGCAAATTTCAGGCAGGAAGTCC +
Preference number: 6 (lower is better)
Translates to: CFSILVSMGVSF*AIMLQISGRKS
Trigger: GGACTTCCTGCCTGAAATTTGCAACATGATTGCCCAGAAGGAAACTCCCATGCTCACCAAGATAGAAAAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129803.2
CDS CAA 72 bp TGTTTTGTCATGGCCCGATGGAAACACCGCTCTAAATaGTCAGACATCTTGGTATACTCACTACTGTCACCA +
Preference number: 6 (lower is better)
Translates to: CFVMARWKHRSK*SDILVYSLLSP
Trigger: TGGTGACAGTAGTGAGTATACCAAGATGTCTGACAATTTAGAGCGGTGTTTCCATCGGGCCATGACAAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CAA 72 bp TTTTCTATCTTGGTGAGCATGGGAGTTTCCTCTAGCTaGATGGATTTGATGGACAGGTGGTCAGACATAAAC +
Preference number: 6 (lower is better)
Translates to: FSILVSMGVSSS*MDLMDRWSDIN
Trigger: GTTTATGTCTGACCACCTGTCCATCAAATCCATCAAGCTAGAGGAAACTCCCATGCTCACCAAGATAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CAA 90 bp TTTGTCATGGCCCGATGGAAACACCGCTCTAAATTGTCAGACATCTaGGTATACTCACTACTGTCACCATTGTATTTTCGGCAATTTCTG +
Preference number: 6 (lower is better)
Translates to: FVMARWKHRSKLSDI*VYSLLSPLYFRQFL
Trigger: CAGAAATTGCCGAAAATACAATGGTGACAGTAGTGAGTATACCAAGATGTCTGACAATTTAGAGCGGTGTTTCCATCGGGCCATGACAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 72 bp CTTGTCTGTAGGTCAGATGTCAAGGAGTTTTCTTCCTaGTTTTCACTGGATATAATCTCCTCCTGTAGCTTT +
Preference number: 6 (lower is better)
Translates to: LVCRSDVKEFSS*FSLDIISSCSF
Trigger: AAAGCTACAGGAGGAGATTATATCCAGTGAAAAGCAGGAAGAAAACTCCTTGACATCTGACCTACAGACAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
ENSMUST00000129803.2
CDS CAA 72 bp ACAGATTCATCCATCTTTTCTTCTTCTGGACCAGAATaGTGTCCATCAGGAGGAACAACTTTAGCAGTCACT +
Preference number: 6 (lower is better)
Translates to: TDSSIFSSSGPE*CPSGGTTLAVT
Trigger: AGTGACTGCTAAAGTTGTTCCTCCTGATGGACACAATTCTGGTCCAGAAGAAGAAAAGATGGATGAATCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS CAA 90 bp CCAGGAAAATGTTTTGTCATGGCCCGATGGAAACACCGCTCTAAATaGTCAGACATCTTGGTATACTCACTACTGTCACCATTGTATTTT +
Preference number: 6 (lower is better)
Translates to: PGKCFVMARWKHRSK*SDILVYSLLSPLYF
Trigger: AAAATACAATGGTGACAGTAGTGAGTATACCAAGATGTCTGACAATTTAGAGCGGTGTTTCCATCGGGCCATGACAAAACATTTTCCTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS GCA 72 bp GGAGAAGTTAAGGCAGTATTTAATGTTTCACAACCTTaGAGACTAGACAGGACATTCTTCTCTGAAAAGAGG +
Preference number: 6 (lower is better)
Translates to: GEVKAVFNVSQP*RLDRTFFSEKR
Trigger: CCTCTTTTCAGAGAAGAATGTCCTGTCTAGTCTGCAAGGTTGTGAAACATTAAATACTGCCTTAACTTCTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8
CDS TCA 72 bp TCAGGAGGAACAACTTTAGCAGTCACTACATCCATTTaGGTTGGAGAAGTTAAGGCAGTATTTAATGTTTCA +
Preference number: 6 (lower is better)
Translates to: SGGTTLAVTTSI*VGEVKAVFNVS
Trigger: TGAAACATTAAATACTGCCTTAACTTCTCCAACTCAAATGGATGTAGTGACTGCTAAAGTTGTTCCTCCTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100993.9
ENSMUST00000112686.8