Pregenerated sensors for CEBPB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056501Ensembl transcript IDs: ENSMUST00000070642.4
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGCGTGCGCGCGGTGCCCGCGGTGTGCCCGCGGTGTCCCCTCGGTaGAGGTGCAGGTGCGCGCAGGGCACGCACGGTGGTCCGGGCGCG | + |
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Preference number: 1 (lower is better) Translates to: VRARGARGVPAVSPR*RCRCAQGTHGGPGA Trigger: CGCGCCCGGACCACCGTGCGTGCCCTGCGCGCACCTGCACCTGCACCGAGGGGACACCGCGGGCACACCGCGGGCACCGCGCGCACGCAC 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| 3UTR GCA 90 bp | CGTCAGTCCCGTGTCCACACGCGCTCAGCCACGTTTGATCCGGATTaGATCAAGTCCCGAAACCCGGTGCGCTGTGCAGGTGCGTGCGCG | + |
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Preference number: 1 (lower is better) Translates to: RQSRVHTRSATFDPD*IKSRNPVRCAGACA Trigger: CGCGCACGCACCTGCACAGCGCACCGGGTTTCGGGACTTGATGCAATCCGGATCAAACGTGGCTGAGCGCGTGTGGACACGGGACTGACG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| 3UTR TCA 90 bp | ACGTGTGTTGCGTCAGTCCCGTGTCCACACGCGCTCAGCCACGTTTaGTCCGGATTGCATCAAGTCCCGAAACCCGGTGCGCTGTGCAGG | + |
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Preference number: 1 (lower is better) Translates to: TCVASVPCPHALSHV*SGLHQVPKPGALCR Trigger: CCTGCACAGCGCACCGGGTTTCGGGACTTGATGCAATCCGGATCAAACGTGGCTGAGCGCGTGTGGACACGGGACTGACGCAACACACGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| 3UTR CAA 90 bp | CACGTGTGTTGCGTCAGTCCCGTGTCCACACGCGCTCAGCCACGTTaGATCCGGATTGCATCAAGTCCCGAAACCCGGTGCGCTGTGCAG | + |
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Preference number: 2 (lower is better) Translates to: HVCCVSPVSTRAQPR*IRIASSPETRCAVQ Trigger: CTGCACAGCGCACCGGGTTTCGGGACTTGATGCAATCCGGATCAAACGTGGCTGAGCGCGTGTGGACACGGGACTGACGCAACACACGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| 3UTR GCA 72 bp | GGTGTGCCCGCGGTGTCCCCTCGGTGCAGGTGCAGGTaGGCGCAGGGCACGCACGGTGGTCCGGGCGCGCGC | + |
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Preference number: 3 (lower is better) Translates to: GVPAVSPRCRCR*AQGTHGGPGAR Trigger: GCGCGCGCCCGGACCACCGTGCGTGCCCTGCGCGCACCTGCACCTGCACCGAGGGGACACCGCGGGCACACC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| 3UTR GCA 72 bp | CGCGGTGCCCGCGGTGTGCCCGCGGTGTCCCCTCGGTaGAGGTGCAGGTGCGCGCAGGGCACGCACGGTGGT | + |
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Preference number: 3 (lower is better) Translates to: RGARGVPAVSPR*RCRCAQGTHGG Trigger: ACCACCGTGCGTGCCCTGCGCGCACCTGCACCTGCACCGAGGGGACACCGCGGGCACACCGCGGGCACCGCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| 3UTR GCA 72 bp | GCGCTGTGCAGGTGCGTGCGCGCGGTGCCCGCGGTGTaGCCGCGGTGTCCCCTCGGTGCAGGTGCAGGTGCG | + |
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Preference number: 3 (lower is better) Translates to: ALCRCVRAVPAV*PRCPLGAGAGA Trigger: CGCACCTGCACCTGCACCGAGGGGACACCGCGGGCACACCGCGGGCACCGCGCGCACGCACCTGCACAGCGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| 3UTR TCA 72 bp | GCGTCAGTCCCGTGTCCACACGCGCTCAGCCACGTTTaGTCCGGATTGCATCAAGTCCCGAAACCCGGTGCG | + |
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Preference number: 3 (lower is better) Translates to: ASVPCPHALSHV*SGLHQVPKPGA Trigger: CGCACCGGGTTTCGGGACTTGATGCAATCCGGATCAAACGTGGCTGAGCGCGTGTGGACACGGGACTGACGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| 3UTR TCA 72 bp | GCAGGAACATCTTTAAGTGATTACTCAGGGCCCGGCTaGCAGTTACACGTGTGTTGCGTCAGTCCCGTGTCC | + |
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Preference number: 3 (lower is better) Translates to: AGTSLSDYSGPG*QLHVCCVSPVS Trigger: GGACACGGGACTGACGCAACACACGTGTAACTGTCAGCCGGGCCCTGAGTAATCACTTAAAGATGTTCCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| 3UTR TCA 72 bp | CAAAAACATCAACAACCCCGCAGGAACATCTTTAAGTaGTTACTCAGGGCCCGGCTGACAGTTACACGTGTG | + |
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Preference number: 3 (lower is better) Translates to: QKHQQPRRNIFK*LLRARLTVTRV Trigger: CACACGTGTAACTGTCAGCCGGGCCCTGAGTAATCACTTAAAGATGTTCCTGCGGGGTTGTTGATGTTTTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS-3UTR GCA 90 bp | GTGCAGGTGCGTGCGCGCGGTGCCCGCGGTGTGCCCGCGGTGTCCCCTCGGTGCTGGACAGGCTGCCGCTaGTGCCGCTCGGCGTCGCCT | + |
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Preference number: 4 (lower is better) Translates to: VQVRARGARGVPAVSPRCWTGCR*CRSASP Trigger: AGGCGACGCCGAGCGGCAGCAGCGGCAGCCTGTCCA...GCACCGAGGGGACACCGCGGGCACACCGCGGGCACCGCGCGCACGCACCTGCAC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS-3UTR CCA 90 bp | CCCGCGGTGTGCCCGCGGTGTCCCCTCGGTGCAGGTGCAGGTGCGCGCAGGGCAGCGTGCCGGGCGGGCTaGACGACGACGACGTGGACA | + |
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Preference number: 4 (lower is better) Translates to: PAVCPRCPLGAGAGARRAACRAG*TTTTWT Trigger: TGTCCACGTCGTCGTCGTCCAGCCCGCCCGGCACGC...TGCCCTGCGCGCACCTGCACCTGCACCGAGGGGACACCGCGGGCACACCGCGGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS-3UTR TCA 90 bp | GTGCCCGCGGTGTGCCCGCGGTGTCCCCTCGGTGCAGGTGCAGGTGCGCGCAGGAGTTCCGCAGGGTGCTaGGCTCTCGCGACAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: VPAVCPRCPLGAGAGARRSSAGC*ALATAA Trigger: AGCAGCTGTCGCGAGAGCTCAGCACCCTGCGGAACT...CCTGCGCGCACCTGCACCTGCACCGAGGGGACACCGCGGGCACACCGCGGGCAC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS-3UTR GCA 90 bp | CGGTGCGCTGTGCAGGTGCGTGCGCGCGGTGCCCGCGGTGTGCCCGCGGTGTCCAGCGGCTCGGGCAGCTaGTTGAACAAGTTCCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: RCAVQVRARGARGVPAVSSGSGS*LNKFRR Trigger: CCTGCGGAACTTGTTCAAGCAGCTGCCCGAGCCGCT...GGACACCGCGGGCACACCGCGGGCACCGCGCGCACGCACCTGCACAGCGCACCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS-3UTR CCA 90 bp | GTGCCCGCGGTGTGCCCGCGGTGTCCCCTCGGTGCAGGTGCAGGTGCGCGCAGGTGTCCACCGTCTTCTTaGCCTTGGCCTTGGCGGGCG | + |
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Preference number: 4 (lower is better) Translates to: VPAVCPRCPLGAGAGARRCPPSS*PWPWRA Trigger: CGCCCGCCAAGGCCAAGGCCAAGAAGACGGTGGACA...CCTGCGCGCACCTGCACCTGCACCGAGGGGACACCGCGGGCACACCGCGGGCAC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS-3UTR TCA 90 bp | GTGCCCGCGGTGTCCCCTCGGTGCAGGTGCAGGTGCGCGCAGGGCACGCACGGTGCTCGGGCAGCTGCTTaGACAAGTTCCGCAGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: VPAVSPRCRCRCAQGTHGARAAA*TSSAGC Trigger: GCACCCTGCGGAACTTGTTCAAGCAGCTGCCCGAGC...ACCGTGCGTGCCCTGCGCGCACCTGCACCTGCACCGAGGGGACACCGCGGGCAC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS-3UTR GCA 90 bp | GTGCCCGCGGTGTGCCCGCGGTGTCCCCTCGGTGCAGGTGCAGGTGCGCGCAGGTGCTCCACCTTCTTCTaGAGCCGCTCGTTCTCCGCC | + |
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Preference number: 4 (lower is better) Translates to: VPAVCPRCPLGAGAGARRCSTFF*SRSFSA Trigger: GGCGGAGAACGAGCGGCTGCAGAAGAAGGTGGAGCA...CCTGCGCGCACCTGCACCTGCACCGAGGGGACACCGCGGGCACACCGCGGGCAC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS-3UTR GCA 90 bp | CAGTCCCGTGTCCACACGCGCTCAGCCACGTTTGATCCGGATTGCATCAAGTCCACGACGTGGACAGGCTaGCGCTGCTGCCGCTCGGCG | + |
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Preference number: 4 (lower is better) Translates to: QSRVHTRSATFDPDCIKSTTWTG*RCCRSA Trigger: CGCCGAGCGGCAGCAGCGGCAGCCTGTCCACGTCGT...GGACTTGATGCAATCCGGATCAAACGTGGCTGAGCGCGTGTGGACACGGGACTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS-3UTR GCA 90 bp | CAGTCCCGTGTCCACACGCGCTCAGCCACGTTTGATCCGGATTGCATCAAGTCCTCGATGGCGCGCTCGTaGTCGCCAATGGCCGGCTCG | + |
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Preference number: 4 (lower is better) Translates to: QSRVHTRSATFDPDCIKSSMARS*SPMAGS Trigger: CGAGCCGGCCATTGGCGAGCACGAGCGCGCCATCGA...GGACTTGATGCAATCCGGATCAAACGTGGCTGAGCGCGTGTGGACACGGGACTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS-3UTR GCA 90 bp | CACGTGTGTTGCGTCAGTCCCGTGTCCACACGCGCTCAGCCACGTTTGATCCGGAGCTCTCGCGACAGCTaGTCCACCTTCTTCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: HVCCVSPVSTRAQPRLIRSSRDS*STFFCS Trigger: GCTGCAGAAGAAGGTGGAGCAGCTGTCGCGAGAGCT...CCGGATCAAACGTGGCTGAGCGCGTGTGGACACGGGACTGACGCAACACACGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| 3UTR CAA 72 bp | TGCGTCAGTCCCGTGTCCACACGCGCTCAGCCACGTTaGATCCGGATTGCATCAAGTCCCGAAACCCGGTGC | + |
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Preference number: 4 (lower is better) Translates to: CVSPVSTRAQPR*IRIASSPETRC Trigger: GCACCGGGTTTCGGGACTTGATGCAATCCGGATCAAACGTGGCTGAGCGCGTGTGGACACGGGACTGACGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS CCA 90 bp | TGGCCGGCTCGGCGGCGGGGGCGCGCGGCGCGGCGCGGGCCGCCTTaGCCCCGTAGGCCAGGCAGTCGGGCTCGTAGTAGAAGTTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: WPARRRGRAARRGPP*PRRPGSRARSRSWP Trigger: TGGCCAACTTCTACTACGAGCCCGACTGCCTGGCCTACGGGGCCAAGGCGGCCCGCGCCGCGCCGCGCGCCCCCGCCGCCGAGCCGGCCA 79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS CCA 90 bp | CGTCGGCGGGGCTCGGCGTGCCGGGCGGGCTGGACGACGACGACGTaGACAGGCTGCCGCTGCTGCCGCTCGGCGTCGCCTGGTAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: RRRGSACRAGWTTTT*TGCRCCRSASPGSP Trigger: TGGGCTACCAGGCGACGCCGAGCGGCAGCAGCGGCAGCCTGTCCACGTCGTCGTCGTCCAGCCCGCCCGGCACGCCGAGCCCCGCCGACG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS GCA 90 bp | GCGTGCCGGGCGGGCTGGACGACGACGACGTGGACAGGCTGCCGCTaGTGCCGCTCGGCGTCGCCTGGTAGCCCAGGTAGGCGCGCAGGG | + |
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Preference number: 5 (lower is better) Translates to: ACRAGWTTTTWTGCR*CRSASPGSPGRRAG Trigger: CCCTGCGCGCCTACCTGGGCTACCAGGCGACGCCGAGCGGCAGCAGCGGCAGCCTGTCCACGTCGTCGTCGTCCAGCCCGCCCGGCACGC 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS GCA 90 bp | GGCTCGGCGTGCCGGGCGGGCTGGACGACGACGACGTGGACAGGCTaGCGCTGCTGCCGCTCGGCGTCGCCTGGTAGCCCAGGTAGGCGC | + |
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Preference number: 5 (lower is better) Translates to: GSACRAGWTTTTWTG*RCCRSASPGSPGRR Trigger: GCGCCTACCTGGGCTACCAGGCGACGCCGAGCGGCAGCAGCGGCAGCCTGTCCACGTCGTCGTCGTCCAGCCCGCCCGGCACGCCGAGCC 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS-3UTR CAA 90 bp | GTGCCCGCGGTGTCCCCTCGGTGCAGGTGCAGGTGCGCGCAGGGCACGCACGGTTTCTTGGCCTTGGCCTaGGCGGGCGCGGCCGGCGGC | + |
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Preference number: 5 (lower is better) Translates to: VPAVSPRCRCRCAQGTHGFLALA*AGAAGG Trigger: GCCGCCGGCCGCGCCCGCCAAGGCCAAGGCCAAGAA...ACCGTGCGTGCCCTGCGCGCACCTGCACCTGCACCGAGGGGACACCGCGGGCAC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS GCA 90 bp | TGCCGGGCGGGCTGGACGACGACGACGTGGACAGGCTGCCGCTGCTaGCGCTCGGCGTCGCCTGGTAGCCCAGGTAGGCGCGCAGGGCGA | + |
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Preference number: 5 (lower is better) Translates to: CRAGWTTTTWTGCRC*RSASPGSPGRRAGR Trigger: TCGCCCTGCGCGCCTACCTGGGCTACCAGGCGACGCCGAGCGGCAGCAGCGGCAGCCTGTCCACGTCGTCGTCGTCCAGCCCGCCCGGCA 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS CCA 90 bp | GGTAGCCCAGGTAGGCGCGCAGGGCGAACGGGAAACCGGCCGCCATaGCGGGCGCGTCGTCCGCGCGCTTGCAGTCCGCGGGTTCGAAGC | + |
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Preference number: 5 (lower is better) Translates to: GSPGRRAGRTGNRPP*RARRPRACSPRVRS Trigger: GCTTCGAACCCGCGGACTGCAAGCGCGCGGACGACGCGCCCGCCATGGCGGCCGGTTTCCCGTTCGCCCTGCGCGCCTACCTGGGCTACC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS GCA 90 bp | CGCCCGCGCGGCCGAGGCTCACGTAACCGTAGTCGGCCGGCTTCTTaGTCGGCTTGGCGCCGTAGTCGTCGGCGAAGAGGTCGGAGAGGA | + |
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Preference number: 5 (lower is better) Translates to: RPRGRGSRNRSRPAS*SAWRRSRRRRGRRG Trigger: TCCTCTCCGACCTCTTCGCCGACGACTACGGCGCCAAGCCGAGCAAGAAGCCGGCCGACTACGGTTACGTGAGCCTCGGCCGCGCGGGCG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS-3UTR CAA 90 bp | CCCGCGGTGTCCCCTCGGTGCAGGTGCAGGTGCGCGCAGGGCACGCACGGTGGTTACTCGTCGCTCAGCTaGTCCACCGTCTTCTTGGCC | + |
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Preference number: 5 (lower is better) Translates to: PAVSPRCRCRCAQGTHGGYSSLS*STVFLA Trigger: GGCCAAGAAGACGGTGGACAAGCTGAGCGACGAGTA...ACCACCGTGCGTGCCCTGCGCGCACCTGCACCTGCACCGAGGGGACACCGCGGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS-3UTR CAA 90 bp | CACGTGTGTTGCGTCAGTCCCGTGTCCACACGCGCTCAGCCACGTTTGATCCGGGCGTCGTCCGCGCGCTaGCAGTCCGCGGGTTCGAAG | + |
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Preference number: 5 (lower is better) Translates to: HVCCVSPVSTRAQPRLIRASSAR*QSAGSK Trigger: CTTCGAACCCGCGGACTGCAAGCGCGCGGACGACGC...CCGGATCAAACGTGGCTGAGCGCGTGTGGACACGGGACTGACGCAACACACGTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS CCA 90 bp | GGCCGAGGCTCACGTAACCGTAGTCGGCCGGCTTCTTGCTCGGCTTaGCGCCGTAGTCGTCGGCGAAGAGGTCGGAGAGGAAGTCGTGGT | + |
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Preference number: 5 (lower is better) Translates to: GRGSRNRSRPASCSA*RRSRRRRGRRGSRG Trigger: ACCACGACTTCCTCTCCGACCTCTTCGCCGACGACTACGGCGCCAAGCCGAGCAAGAAGCCGGCCGACTACGGTTACGTGAGCCTCGGCC 66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS-3UTR CAA 90 bp | CACGTGTGTTGCGTCAGTCCCGTGTCCACACGCGCTCAGCCACGTTTGATCCGGGGCTCGGGCAGCTGCTaGAACAAGTTCCGCAGGGTG | + |
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Preference number: 5 (lower is better) Translates to: HVCCVSPVSTRAQPRLIRGSGSC*NKFRRV Trigger: CACCCTGCGGAACTTGTTCAAGCAGCTGCCCGAGCC...CCGGATCAAACGTGGCTGAGCGCGTGTGGACACGGGACTGACGCAACACACGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS CAA 90 bp | TCGTCCGCGCGCTTGCAGTCCGCGGGTTCGAAGCCCGGCTCCGCCTaGAGCGCGGCGGGAGGCGGCGGCGGGAAGCAGGCGGGCGGCGCG | + |
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Preference number: 6 (lower is better) Translates to: SSARLQSAGSKPGSA*SAAGGGGGKQAGGA Trigger: CGCGCCGCCCGCCTGCTTCCCGCCGCCGCCTCCCGCCGCGCTCAAGGCGGAGCCGGGCTTCGAACCCGCGGACTGCAAGCGCGCGGACGA 80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS CCA 72 bp | GAGGCGGCGGCGGGAAGCAGGCGGGCGGCGCGGCCTTaGCGCCCGCGCGGCCGAGGCTCACGTAACCGTAGT | + |
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Preference number: 6 (lower is better) Translates to: EAAAGSRRAARP*RPRGRGSRNRS Trigger: ACTACGGTTACGTGAGCCTCGGCCGCGCGGGCGCCAAGGCCGCGCCGCCCGCCTGCTTCCCGCCGCCGCCTC 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS CCA 72 bp | GGCTCGGCGTGCCGGGCGGGCTGGACGACGACGACGTaGACAGGCTGCCGCTGCTGCCGCTCGGCGTCGCCT | + |
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Preference number: 6 (lower is better) Translates to: GSACRAGWTTTT*TGCRCCRSASP Trigger: AGGCGACGCCGAGCGGCAGCAGCGGCAGCCTGTCCACGTCGTCGTCGTCCAGCCCGCCCGGCACGCCGAGCC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS CCA 72 bp | CCTTGGCGTCGGCGGGGCTCGGCGTGCCGGGCGGGCTaGACGACGACGACGTGGACAGGCTGCCGCTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: PWRRRGSACRAG*TTTTWTGCRCC Trigger: GCAGCAGCGGCAGCCTGTCCACGTCGTCGTCGTCCAGCCCGCCCGGCACGCCGAGCCCCGCCGACGCCAAGG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS CAA 90 bp | GCGAACGGGAAACCGGCCGCCATGGCGGGCGCGTCGTCCGCGCGCTaGCAGTCCGCGGGTTCGAAGCCCGGCTCCGCCTTGAGCGCGGCG | + |
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Preference number: 6 (lower is better) Translates to: ANGKPAAMAGASSAR*QSAGSKPGSALSAA Trigger: CGCCGCGCTCAAGGCGGAGCCGGGCTTCGAACCCGCGGACTGCAAGCGCGCGGACGACGCGCCCGCCATGGCGGCCGGTTTCCCGTTCGC 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS GCA 72 bp | TGCCGGGCGGGCTGGACGACGACGACGTGGACAGGCTaGCGCTGCTGCCGCTCGGCGTCGCCTGGTAGCCCA | + |
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Preference number: 6 (lower is better) Translates to: CRAGWTTTTWTG*RCCRSASPGSP Trigger: TGGGCTACCAGGCGACGCCGAGCGGCAGCAGCGGCAGCCTGTCCACGTCGTCGTCGTCCAGCCCGCCCGGCA 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS CAA 72 bp | AAACCGGCCGCCATGGCGGGCGCGTCGTCCGCGCGCTaGCAGTCCGCGGGTTCGAAGCCCGGCTCCGCCTTG | + |
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Preference number: 6 (lower is better) Translates to: KPAAMAGASSAR*QSAGSKPGSAL Trigger: CAAGGCGGAGCCGGGCTTCGAACCCGCGGACTGCAAGCGCGCGGACGACGCGCCCGCCATGGCGGCCGGTTT 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS TCA 72 bp | AGTCCGCGGCGGGCGCGAGCGGCTCCAGGTAGGGGCTaGAGTCGATGGCGCGCTCGTGCTCGCCAATGGCCG | + |
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Preference number: 6 (lower is better) Translates to: SPRRARAAPGRG*SRWRARARQWP Trigger: CGGCCATTGGCGAGCACGAGCGCGCCATCGACTTCAGCCCCTACCTGGAGCCGCTCGCGCCCGCCGCGGACT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS GCA 72 bp | GCGGGCTGGACGACGACGACGTGGACAGGCTGCCGCTaGTGCCGCTCGGCGTCGCCTGGTAGCCCAGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: AGWTTTTWTGCR*CRSASPGSPGR Trigger: CCTACCTGGGCTACCAGGCGACGCCGAGCGGCAGCAGCGGCAGCCTGTCCACGTCGTCGTCGTCCAGCCCGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS GCA 72 bp | GGCCGAGGCTCACGTAACCGTAGTCGGCCGGCTTCTTaGTCGGCTTGGCGCCGTAGTCGTCGGCGAAGAGGT | + |
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Preference number: 6 (lower is better) Translates to: GRGSRNRSRPAS*SAWRRSRRRRG Trigger: ACCTCTTCGCCGACGACTACGGCGCCAAGCCGAGCAAGAAGCCGGCCGACTACGGTTACGTGAGCCTCGGCC 67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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| CDS CCA 72 bp | TCACGTAACCGTAGTCGGCCGGCTTCTTGCTCGGCTTaGCGCCGTAGTCGTCGGCGAAGAGGTCGGAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: SRNRSRPASCSA*RRSRRRRGRRG Trigger: TCCTCTCCGACCTCTTCGCCGACGACTACGGCGCCAAGCCGAGCAAGAAGCCGGCCGACTACGGTTACGTGA 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070642.4 |
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