Pregenerated sensors for CEACAM9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000007209Ensembl transcript IDs: ENSMUST00000001984.5, ENSMUST00000206252.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCACGCTGGCTGCCTGGGATGGCAGGGCTCCGTCACCACGCTGGCTaGCTTGGTTCTTCCCTAGAACTTTTCTTCATTTTTAGCATCATT | + |
|
Preference number: 1 (lower is better) Translates to: PRWLPGMAGLRHHAG*LGSSLELFFIFSII Trigger: AATGATGCTAAAAATGAAGAAAAGTTCTAGGGAAGAACCAAGGCAGCCAGCGTGGTGACGGAGCCCTGCCATCCCAGGCAGCCAGCGTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR-3UTR TCA 90 bp | AAAGACAAATGCCATGTACACAGAGGCAGAAGCAGGCTGACAGCTATCAGGGCTCAACGGTGTGAGGCATaGCTGGGGCACGTGAGAGGA | + |
|
Preference number: 2 (lower is better) Translates to: KDKCHVHRGRSRLTAIRAQRCEA*LGHVRG Trigger: TCCTCTCACGTGCCCCAGTCATGCCTCACACCGTTG...AGCCCTGATAGCTGTCAGCCTGCTTCTGCCTCTGTGTACATGGCATTTGTCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR-3UTR CCA 90 bp | GTAGTTTTGCTTACTGTGTTGATTGGTTTTGAGACTCGGTCTCTCTTTGTAACCGCTGGCTGCCTGGGATaGCAGGGCTCCGTCACCACG | + |
|
Preference number: 2 (lower is better) Translates to: VVLLTVLIGFETRSLFVTAGCLG*QGSVTT Trigger: CGTGGTGACGGAGCCCTGCCATCCCAGGCAGCCAGC...GGTTACAAAGAGAGACCGAGTCTCAAAACCAATCAACACAGTAAGCAAAACTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR-3UTR CCA 90 bp | ATGCCATGTACACAGAGGCAGAAGCAGGCTGACAGCTATCAGGGCTGTAGGAAAAGCTCTCCATGGATCTaGAGGACTGGCCATATTCAA | + |
|
Preference number: 2 (lower is better) Translates to: MPCTQRQKQADSYQGCRKSSPWI*RTGHIQ Trigger: TTGAATATGGCCAGTCCTCCAGATCCATGGAGAGCT...TTTCCTACAGCCCTGATAGCTGTCAGCCTGCTTCTGCCTCTGTGTACATGGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR-3UTR CCA 90 bp | ATGCCATGTACACAGAGGCAGAAGCAGGCTGACAGCTATCAGGGCTGTAGGAAAAAACATCCAGAAATTTaGGGACTCCTGGAATCAGCT | + |
|
Preference number: 2 (lower is better) Translates to: MPCTQRQKQADSYQGCRKKHPEI*GLLESA Trigger: AGCTGATTCCAGGAGTCCCCAAATTTCTGGATGTTT...TTTCCTACAGCCCTGATAGCTGTCAGCCTGCTTCTGCCTCTGTGTACATGGCAT 48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR-3UTR TCA 90 bp | ATGCCATGTACACAGAGGCAGAAGCAGGCTGACAGCTATCAGGGCTGTAGGAAATTTTGCTTACTGTGTTaGTTGGTTTTGAGACTCGGT | + |
|
Preference number: 2 (lower is better) Translates to: MPCTQRQKQADSYQGCRKFCLLC*LVLRLG Trigger: ACCGAGTCTCAAAACCAATCAACACAGTAAGCAAAA...TTTCCTACAGCCCTGATAGCTGTCAGCCTGCTTCTGCCTCTGTGTACATGGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR-3UTR CCA 90 bp | AGTTATAATCCCTTTGTAGTTTTGCTTACTGTGTTGATTGGTTTTGAGACTCGGAGTTTTACCCTGGGATaGCAGGGCTCCGTCACCACG | + |
|
Preference number: 2 (lower is better) Translates to: SYNPFVVLLTVLIGFETRSFTLG*QGSVTT Trigger: CGTGGTGACGGAGCCCTGCCATCCCAGGGTAAAACT...CCGAGTCTCAAAACCAATCAACACAGTAAGCAAAACTACAAAGGGATTATAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR CCA 72 bp | CTGGGATGGCAGGGCTCCGTCACCACGCTGGCTGCCTaGGATGGCAGGGCTCCGTCACCACGCTGGCTGCCT | + |
|
Preference number: 3 (lower is better) Translates to: LGWQGSVTTLAA*DGRAPSPRWLP Trigger: AGGCAGCCAGCGTGGTGACGGAGCCCTGCCATCCCAGGCAGCCAGCGTGGTGACGGAGCCCTGCCATCCCAG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR CCA 72 bp | ATGGCAGGGCTCCGTCACCACGCTGGCTGCCTGGGATaGCAGGGCTCCGTCACCACGCTGGCTGCCTTGGTT | + |
|
Preference number: 3 (lower is better) Translates to: MAGLRHHAGCLG*QGSVTTLAALV Trigger: AACCAAGGCAGCCAGCGTGGTGACGGAGCCCTGCCATCCCAGGCAGCCAGCGTGGTGACGGAGCCCTGCCAT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR TCA 72 bp | TCTGGAGAGGTGTCTGGGCGGCAACGGTGTGAGGCATaGCTGGGGCACGTGAGAGGAGAATGTGTCTGTCTC | + |
|
Preference number: 3 (lower is better) Translates to: SGEVSGRQRCEA*LGHVRGECVCL Trigger: GAGACAGACACATTCTCCTCTCACGTGCCCCAGTCATGCCTCACACCGTTGCCGCCCAGACACCTCTCCAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR CCA 72 bp | ACTCATGATCCTGCTGACTGGAGTTTTACCCTGGGATaGCAGGGCTCCGTCACCACGCTGGCTGCCTGGGAT | + |
|
Preference number: 3 (lower is better) Translates to: THDPADWSFTLG*QGSVTTLAAWD Trigger: ATCCCAGGCAGCCAGCGTGGTGACGGAGCCCTGCCATCCCAGGGTAAAACTCCAGTCAGCAGGATCATGAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR CCA 72 bp | CTGGCTGCCTGGGATGGCAGGGCTCCGTCACCACGCTaGCTGCCTTGGTTCTTCCCTAGAACTTTTCTTCAT | + |
|
Preference number: 3 (lower is better) Translates to: LAAWDGRAPSPR*LPWFFPRTFLH Trigger: ATGAAGAAAAGTTCTAGGGAAGAACCAAGGCAGCCAGCGTGGTGACGGAGCCCTGCCATCCCAGGCAGCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR CCA 72 bp | TTCAAACTCATGATCCTGCTGACTGGAGTTTTACCCTaGGATGGCAGGGCTCCGTCACCACGCTGGCTGCCT | + |
|
Preference number: 3 (lower is better) Translates to: FKLMILLTGVLP*DGRAPSPRWLP Trigger: AGGCAGCCAGCGTGGTGACGGAGCCCTGCCATCCCAGGGTAAAACTCCAGTCAGCAGGATCATGAGTTTGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR GCA 72 bp | CTGCCTGGGATGGCAGGGCTCCGTCACCACGCTGGCTaGCTTGGTTCTTCCCTAGAACTTTTCTTCATTTTT | + |
|
Preference number: 3 (lower is better) Translates to: LPGMAGLRHHAG*LGSSLELFFIF Trigger: AAAAATGAAGAAAAGTTCTAGGGAAGAACCAAGGCAGCCAGCGTGGTGACGGAGCCCTGCCATCCCAGGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR CCA 72 bp | TCCAGAAATTTGGGGACTCCTGGAATCAGCTCTCCATaGATCTGGAGGACTGGCCATATTCAACTCAGAACC | + |
|
Preference number: 3 (lower is better) Translates to: SRNLGTPGISSP*IWRTGHIQLRT Trigger: GGTTCTGAGTTGAATATGGCCAGTCCTCCAGATCCATGGAGAGCTGATTCCAGGAGTCCCCAAATTTCTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR CCA 72 bp | CAGAAGCAGGCTGACAGCTATCAGGGCTGTAGGAAATaGAATACGCTTAGAAATGGTCTGGAGAGGTGTCTG | + |
|
Preference number: 3 (lower is better) Translates to: QKQADSYQGCRK*NTLRNGLERCL Trigger: CAGACACCTCTCCAGACCATTTCTAAGCGTATTCCATTTCCTACAGCCCTGATAGCTGTCAGCCTGCTTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR-3UTR CAA 90 bp | GACTCAAAACATCCAGAAATTTGGGGACTCCTGGAATCAGCTCTCCATGGATCTGTTTTGCTTACTGTGTaGATTGGTTTTGAGACTCGG | + |
|
Preference number: 3 (lower is better) Translates to: DSKHPEIWGLLESALHGSVLLTV*IGFETR Trigger: CCGAGTCTCAAAACCAATCAACACAGTAAGCAAAAC...AGATCCATGGAGAGCTGATTCCAGGAGTCCCCAAATTTCTGGATGTTTTGAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR TCA 72 bp | TCCCTTTGTAGTTTTGCTTACTGTGTTGATTGGTTTTaGGACTCGGTCTCTCTTTGTAACCCTGGCTGGTTC | + |
|
Preference number: 3 (lower is better) Translates to: SLCSFAYCVDWF*DSVSLCNPGWF Trigger: GAACCAGCCAGGGTTACAAAGAGAGACCGAGTCTCAAAACCAATCAACACAGTAAGCAAAACTACAAAGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS-3UTR TCA 90 bp | GCTCCGTCACCACGCTGGCTGCCTGGGATGGCAGGGCTCCGTCACCACGCTGGCACAGGCCCTGGTGATTaGAGAGCCAGCGGATGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: APSPRWLPGMAGLRHHAGTGPGD*RASGWR Trigger: TCTCCATCCGCTGGCTCTTCAATCACCAGGGCCTGT...GCCAGCGTGGTGACGGAGCCCTGCCATCCCAGGCAGCCAGCGTGGTGACGGAGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS-3UTR GCA 90 bp | CGTCACCACGCTGGCTGCCTGGGATGGCAGGGCTCCGTCACCACGCTGGCTGCCTGTGCCACGGGCTCCTaGACTTCCAGATGCACATGT | + |
|
Preference number: 4 (lower is better) Translates to: RHHAGCLGWQGSVTTLAACATGS*TSRCTC Trigger: ACATGTGCATCTGGAAGTGCAGGAGCCCGTGGCACA...GGCAGCCAGCGTGGTGACGGAGCCCTGCCATCCCAGGCAGCCAGCGTGGTGACG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS-3UTR CCA 90 bp | ACGCTGGCTGCCTGGGATGGCAGGGCTCCGTCACCACGCTGGCTGCCTTGGTTCCGCCTGGACGTTCAGTaGCATTTCATGCACAAACAG | + |
|
Preference number: 4 (lower is better) Translates to: TLAAWDGRAPSPRWLPWFRLDVQ*HFMHKQ Trigger: CTGTTTGTGCATGAAATGCCACTGAACGTCCAGGCG...GAACCAAGGCAGCCAGCGTGGTGACGGAGCCCTGCCATCCCAGGCAGCCAGCGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS-3UTR CCA 90 bp | GATCCTGCTGACTGGAGTTTTACCCTGGGATGGCAGGGCTCCGTCACCACGCTGGGCATCTTCGAACTTTaGTTCGTGGGTGTTAAGTAC | + |
|
Preference number: 4 (lower is better) Translates to: DPADWSFTLGWQGSVTTLGIFEL*FVGVKY Trigger: GTACTTAACACCCACGAACCAAAGTTCGAAGATGCC...CAGCGTGGTGACGGAGCCCTGCCATCCCAGGGTAAAACTCCAGTCAGCAGGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS-3UTR GCA 90 bp | CTGACTGGAGTTTTACCCTGGGATGGCAGGGCTCCGTCACCACGCTGGCTGCCTTTCAGTGGCATTTCATaGACAAACAGAACGGAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: LTGVLPWDGRAPSPRWLPFSGIS*TNRTEF Trigger: AAACTCCGTTCTGTTTGTGCATGAAATGCCACTGAA...AGGCAGCCAGCGTGGTGACGGAGCCCTGCCATCCCAGGGTAAAACTCCAGTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS-3UTR CCA 90 bp | GACTCAAAACATCCAGAAATTTGGGGACTCCTGGAATCAGCTCTCCATGGATCTGCGGTGCTGTCTGCTTaGAGGGTAGGCTGTGCCACG | + |
|
Preference number: 4 (lower is better) Translates to: DSKHPEIWGLLESALHGSAVLSA*RVGCAT Trigger: CGTGGCACAGCCTACCCTCCAAGCAGACAGCACCGC...AGATCCATGGAGAGCTGATTCCAGGAGTCCCCAAATTTCTGGATGTTTTGAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS-3UTR TCA 90 bp | AAAGACAAATGCCATGTACACAGAGGCAGAAGCAGGCTGACAGCTATCAGGGCTCTTCTGAGACACATGTaGGGGTCACAGAACCAGCTT | + |
|
Preference number: 4 (lower is better) Translates to: KDKCHVHRGRSRLTAIRALLRHM*GSQNQL Trigger: AAGCTGGTTCTGTGACCCTCACATGTGTCTCAGAAG...AGCCCTGATAGCTGTCAGCCTGCTTCTGCCTCTGTGTACATGGCATTTGTCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS-3UTR TCA 90 bp | GACTCAAAACATCCAGAAATTTGGGGACTCCTGGAATCAGCTCTCCATGGATCTTTAAGAGGAAGGCTGTaGGCAGGAGCCCTTTGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: DSKHPEIWGLLESALHGSLRGRL*AGALCR Trigger: TCTGCAAAGGGCTCCTGCTCACAGCCTTCCTCTTAA...AGATCCATGGAGAGCTGATTCCAGGAGTCCCCAAATTTCTGGATGTTTTGAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS-3UTR GCA 90 bp | AGCATCATTAACAAAGAATTCCCTGCCCCCGTGACGCACGAAGAGAGAGGCCAGTCCTGCACTTCCAGATaGACATGTGTTAATTCGCTT | + |
|
Preference number: 4 (lower is better) Translates to: SIINKEFPAPVTHEERGQSCTSR*TCVNSL Trigger: AAGCGAATTAACACATGTGCATCTGGAAGTGCAGGA...CTGGCCTCTCTCTTCGTGCGTCACGGGGGCAGGGAATTCTTTGTTAATGATGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS-3UTR TCA 90 bp | ACTGTGTTGATTGGTTTTGAGACTCGGTCTCTCTTTGTAACCCTGGCTGGTTCAGAGTCATCCTGTCATTaGAATACAGGCCCTGGTGAT | + |
|
Preference number: 4 (lower is better) Translates to: TVLIGFETRSLFVTLAGSESSCH*NTGPGD Trigger: ATCACCAGGGCCTGTATTTCAATGACAGGATGACTC...TGAACCAGCCAGGGTTACAAAGAGAGACCGAGTCTCAAAACCAATCAACACAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS-3UTR TCA 90 bp | AGTTATAATCCCTTTGTAGTTTTGCTTACTGTGTTGATTGGTTTTGAGACTCGGAAATACAGGCCCTGGTaGTTGAAGAGCCAGCGGATG | + |
|
Preference number: 4 (lower is better) Translates to: SYNPFVVLLTVLIGFETRKYRPW*LKSQRM Trigger: CATCCGCTGGCTCTTCAATCACCAGGGCCTGTATTT...CCGAGTCTCAAAACCAATCAACACAGTAAGCAAAACTACAAAGGGATTATAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| 3UTR CAA 72 bp | CTTAGTTATAATCCCTTTGTAGTTTTGCTTACTGTGTaGATTGGTTTTGAGACTCGGTCTCTCTTTGTAACC | + |
|
Preference number: 4 (lower is better) Translates to: LSYNPFVVLLTV*IGFETRSLFVT Trigger: GGTTACAAAGAGAGACCGAGTCTCAAAACCAATCAACACAGTAAGCAAAACTACAAAGGGATTATAACTAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS-3UTR CAA 90 bp | CGTCACCACGCTGGCTGCCTGGGATGGCAGGGCTCCGTCACCACGCTGGCTGCCACTCCACTGTCAGCCTaGGTGACGTTTCTGATCAGC | + |
|
Preference number: 5 (lower is better) Translates to: RHHAGCLGWQGSVTTLAATPLSA*VTFLIS Trigger: GCTGATCAGAAACGTCACCAAGGCTGACAGTGGAGT...GGCAGCCAGCGTGGTGACGGAGCCCTGCCATCCCAGGCAGCCAGCGTGGTGACG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS TCA 90 bp | GCCCTGGTGATTGAAGAGCCAGCGGATGGAGAGTCCAGGGTCTTCTaGGACACATGTGAGGGTCACAGAACCAGCTTCTGTTACCGCGGT | + |
|
Preference number: 5 (lower is better) Translates to: ALVIEEPADGESRVF*DTCEGHRTSFCYRG Trigger: ACCGCGGTAACAGAAGCTGGTTCTGTGACCCTCACATGTGTCTCAGAAGACCCTGGACTCTCCATCCGCTGGCTCTTCAATCACCAGGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS GCA 90 bp | ACCGCGGTGCTGTCTGCTTGGAGGGTAGGCTGTGCCACGGGCTCCTaGACTTCCAGATGCACATGTGTTAATTCGCTTTCCATTTCCGTG | + |
|
Preference number: 5 (lower is better) Translates to: TAVLSAWRVGCATGS*TSRCTCVNSLSISV Trigger: CACGGAAATGGAAAGCGAATTAACACATGTGCATCTGGAAGTGCAGGAGCCCGTGGCACAGCCTACCCTCCAAGCAGACAGCACCGCGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS-3UTR CAA 90 bp | ATGCCATGTACACAGAGGCAGAAGCAGGCTGACAGCTATCAGGGCTGTAGGAAAGTGAGCAGGAGCCCTTaGCAGAGAAACAGAGAAGGG | + |
|
Preference number: 5 (lower is better) Translates to: MPCTQRQKQADSYQGCRKVSRSP*QRNREG Trigger: CCCTTCTCTGTTTCTCTGCAAAGGGCTCCTGCTCAC...TTTCCTACAGCCCTGATAGCTGTCAGCCTGCTTCTGCCTCTGTGTACATGGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS TCA 90 bp | GTGCATTCCAGCAGGTTAAGAGGAAGGCTAGGAGAGAAAATCCTGTaGGCAGGAGCCCTTTGCAGAGAAACAGAGAAGGGGACTCCATGG | + |
|
Preference number: 5 (lower is better) Translates to: VHSSRLRGRLGEKIL*AGALCRETEKGTPW Trigger: CCATGGAGTCCCCTTCTCTGTTTCTCTGCAAAGGGCTCCTGCTCACAGGATTTTCTCTCCTAGCCTTCCTCTTAACCTGCTGGAATGCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000206252.2 |
||
| CDS-3UTR CAA 90 bp | AGCATCATTAACAAAGAATTCCCTGCCCCCGTGACGCACGAAGAGAGAGGCCAGACTAGTCACAGACATTaGGAGCGGGAGACTCATCTT | + |
|
Preference number: 5 (lower is better) Translates to: SIINKEFPAPVTHEERGQTSHRH*ERETHL Trigger: AAGATGAGTCTCCCGCTCCAAATGTCTGTGACTAGT...CTGGCCTCTCTCTTCGTGCGTCACGGGGGCAGGGAATTCTTTGTTAATGATGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS GCA 90 bp | TCTGCTTGGAGGGTAGGCTGTGCCACGGGCTCCTGCACTTCCAGATaGACATGTGTTAATTCGCTTTCCATTTCCGTGTTAAATGTTAGT | + |
|
Preference number: 5 (lower is better) Translates to: SAWRVGCATGSCTSR*TCVNSLSISVLNVS Trigger: ACTAACATTTAACACGGAAATGGAAAGCGAATTAACACATGTGCATCTGGAAGTGCAGGAGCCCGTGGCACAGCCTACCCTCCAAGCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS-3UTR CAA 90 bp | GTAGTTTTGCTTACTGTGTTGATTGGTTTTGAGACTCGGTCTCTCTTTGTAACCCCAGCATCCTCCCTCTaGGCTGGGTCTATGGTAAGT | + |
|
Preference number: 5 (lower is better) Translates to: VVLLTVLIGFETRSLFVTPASSL*AGSMVS Trigger: ACTTACCATAGACCCAGCCAAGAGGGAGGATGCTGG...GGTTACAAAGAGAGACCGAGTCTCAAAACCAATCAACACAGTAAGCAAAACTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS CCA 72 bp | ACAGAACCAGCTTCTGTTACCGCGGTGCTGTCTGCTTaGAGGGTAGGCTGTGCCACGGGCTCCTGCACTTCC | + |
|
Preference number: 6 (lower is better) Translates to: TEPASVTAVLSA*RVGCATGSCTS Trigger: GGAAGTGCAGGAGCCCGTGGCACAGCCTACCCTCCAAGCAGACAGCACCGCGGTAACAGAAGCTGGTTCTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS CAA 72 bp | CACAGAACCAGCTTCTGTTACCGCGGTGCTGTCTGCTaGGAGGGTAGGCTGTGCCACGGGCTCCTGCACTTC | + |
|
Preference number: 6 (lower is better) Translates to: HRTSFCYRGAVC*EGRLCHGLLHF Trigger: GAAGTGCAGGAGCCCGTGGCACAGCCTACCCTCCAAGCAGACAGCACCGCGGTAACAGAAGCTGGTTCTGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS CAA 90 bp | TGTGAGGGTCACAGAACCAGCTTCTGTTACCGCGGTGCTGTCTGCTaGGAGGGTAGGCTGTGCCACGGGCTCCTGCACTTCCAGATGCAC | + |
|
Preference number: 6 (lower is better) Translates to: CEGHRTSFCYRGAVC*EGRLCHGLLHFQMH Trigger: GTGCATCTGGAAGTGCAGGAGCCCGTGGCACAGCCTACCCTCCAAGCAGACAGCACCGCGGTAACAGAAGCTGGTTCTGTGACCCTCACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS GCA 72 bp | TGTTACCGCGGTGCTGTCTGCTTGGAGGGTAGGCTGTaGCACGGGCTCCTGCACTTCCAGATGCACATGTGT | + |
|
Preference number: 6 (lower is better) Translates to: CYRGAVCLEGRL*HGLLHFQMHMC Trigger: ACACATGTGCATCTGGAAGTGCAGGAGCCCGTGGCACAGCCTACCCTCCAAGCAGACAGCACCGCGGTAACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS GCA 72 bp | CTGTCTGCTTGGAGGGTAGGCTGTGCCACGGGCTCCTaGACTTCCAGATGCACATGTGTTAATTCGCTTTCC | + |
|
Preference number: 6 (lower is better) Translates to: LSAWRVGCATGS*TSRCTCVNSLS Trigger: GGAAAGCGAATTAACACATGTGCATCTGGAAGTGCAGGAGCCCGTGGCACAGCCTACCCTCCAAGCAGACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS TCA 72 bp | ATTGAAGAGCCAGCGGATGGAGAGTCCAGGGTCTTCTaGGACACATGTGAGGGTCACAGAACCAGCTTCTGT | + |
|
Preference number: 6 (lower is better) Translates to: IEEPADGESRVF*DTCEGHRTSFC Trigger: ACAGAAGCTGGTTCTGTGACCCTCACATGTGTCTCAGAAGACCCTGGACTCTCCATCCGCTGGCTCTTCAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||
| CDS GCA 72 bp | AGGGTAGGCTGTGCCACGGGCTCCTGCACTTCCAGATaGACATGTGTTAATTCGCTTTCCATTTCCGTGTTA | + |
|
Preference number: 6 (lower is better) Translates to: RVGCATGSCTSR*TCVNSLSISVL Trigger: TAACACGGAAATGGAAAGCGAATTAACACATGTGCATCTGGAAGTGCAGGAGCCCGTGGCACAGCCTACCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001984.5 |
||