Pregenerated sensors for CEACAM12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030366Ensembl transcript IDs: ENSMUST00000032520.9, ENSMUST00000108483.2, ENSMUST00000108487.9
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGCTCTCAAGTCCCTGTTCGACTGTCCCTCAGGTCGATGCAAACTaGCACCAGAACAGGGACCCCAGGGGGTCGCAGAGAACACCACTC | + |
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Preference number: 1 (lower is better) Translates to: VLSSPCSTVPQVDAN*HQNRDPRGSQRTPL Trigger: GAGTGGTGTTCTCTGCGACCCCCTGGGGTCCCTGTTCTGGTGCCAGTTTGCATCGACCTGAGGGACAGTCGAACAGGGACTTGAGAGCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR TCA 90 bp | ATTTGTTGCTTCCACTGCCTGGACCAGACTCTCCCTGTGAGACACTaGTGCCTAAGGAGAAAATTTCTGAACACACAGCACTCCTCTGAC | + |
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Preference number: 1 (lower is better) Translates to: ICCFHCLDQTLPVRH*CLRRKFLNTQHSSD Trigger: GTCAGAGGAGTGCTGTGTGTTCAGAAATTTTCTCCTTAGGCATCAGTGTCTCACAGGGAGAGTCTGGTCCAGGCAGTGGAAGCAACAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR GCA 90 bp | TTTCCTGTGAAGTCTCAAGCCTATCAGAACAGTCAGTGTGGTGCATaGCCAGCTGTTCTGTCCATGTTGAATCTCAGGAAAAGGAGATGC | + |
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Preference number: 1 (lower is better) Translates to: FPVKSQAYQNSQCGA*PAVLSMLNLRKRRC Trigger: GCATCTCCTTTTCCTGAGATTCAACATGGACAGAACAGCTGGGCATGCACCACACTGACTGTTCTGATAGGCTTGAGACTTCACAGGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR GCA 90 bp | AAACTTTCCTGTGAAGTCTCAAGCCTATCAGAACAGTCAGTGTGGTaGATGCCCAGCTGTTCTGTCCATGTTGAATCTCAGGAAAAGGAG | + |
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Preference number: 1 (lower is better) Translates to: KLSCEVSSLSEQSVW*MPSCSVHVESQEKE Trigger: CTCCTTTTCCTGAGATTCAACATGGACAGAACAGCTGGGCATGCACCACACTGACTGTTCTGATAGGCTTGAGACTTCACAGGAAAGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR CCA 90 bp | TCCAAACTTTCCTGTGAAGTCTCAAGCCTATCAGAACAGTCAGTGTaGTGCATGCCCAGCTGTTCTGTCCATGTTGAATCTCAGGAAAAG | + |
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Preference number: 1 (lower is better) Translates to: SKLSCEVSSLSEQSV*CMPSCSVHVESQEK Trigger: CTTTTCCTGAGATTCAACATGGACAGAACAGCTGGGCATGCACCACACTGACTGTTCTGATAGGCTTGAGACTTCACAGGAAAGTTTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR GCA 90 bp | CTTGATGTCAGCAGAAAACAAATTGCTATAAATCTTGTGGACAGGTaGCTAATAACCCATTCTGTTCTGATCTTACTGCTGAAATGCTTA | + |
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Preference number: 1 (lower is better) Translates to: LDVSRKQIAINLVDR*LITHSVLILLLKCL Trigger: TAAGCATTTCAGCAGTAAGATCAGAACAGAATGGGTTATTAGGCACCTGTCCACAAGATTTATAGCAATTTGTTTTCTGCTGACATCAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR-3UTR GCA 90 bp | CTTAAGTGTTTGCTGGCACAAAGTCTTGGCCTCTGGAAAAGTACTAGCCCAGCTCCGTTCTCATCCAGGTaGTCTCAAGTCCCTGTTCGA | + |
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Preference number: 2 (lower is better) Translates to: LKCLLAQSLGLWKSTSPAPFSSR*SQVPVR Trigger: TCGAACAGGGACTTGAGAGCACCTGGATGAGAACGG...AGCTGGGCTAGTACTTTTCCAGAGGCCAAGACTTTGTGCCAGCAAACACTTAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR CAA 90 bp | TGTTCAGGGAGAGGTCCAAGAGTGTCTGAGCTGAGGATGACATCATaGGACCAAGTTACTATACTACTGTCTGCAGGTTCCAGTCAGATC | + |
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Preference number: 2 (lower is better) Translates to: CSGRGPRVSELRMTS*DQVTILLSAGSSQI Trigger: GATCTGACTGGAACCTGCAGACAGTAGTATAGTAACTTGGTCCAATGATGTCATCCTCAGCTCAGACACTCTTGGACCTCTCCCTGAACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR-3UTR GCA 90 bp | CTTAAGTGTTTGCTGGCACAAAGTCTTGGCCTCTGGAAAAGTACTAGCCCAGCTATTCTTCATGTTTCTTaGCCCCCGTTCTCATCCAGG | + |
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Preference number: 2 (lower is better) Translates to: LKCLLAQSLGLWKSTSPAILHVS*PPFSSR Trigger: CCTGGATGAGAACGGGGGGCAAGAAACATGAAGAAT...AGCTGGGCTAGTACTTTTCCAGAGGCCAAGACTTTGTGCCAGCAAACACTTAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR-3UTR GCA 90 bp | TGCTGGCACAAAGTCTTGGCCTCTGGAAAAGTACTAGCCCAGCTGAGTACAAATGTTCCTGGGAATAGGTaGATTACCCAGAGACAAAGT | + |
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Preference number: 2 (lower is better) Translates to: CWHKVLASGKVLAQLSTNVPGNR*ITQRQS Trigger: ACTTTGTCTCTGGGTAATGCACCTATTCCCAGGAAC...ATTTGTACTCAGCTGGGCTAGTACTTTTCCAGAGGCCAAGACTTTGTGCCAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR-3UTR TCA 90 bp | GACAGGTGCCTAATAACCCATTCTGTTCTGATCTTACTGCTGAAATGCTTACCCCTTGATCAGGCTTCTTaGCTTGCTGCTCATTCTTCA | + |
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Preference number: 2 (lower is better) Translates to: DRCLITHSVLILLLKCLPLDQAS*LAAHSS Trigger: TGAAGAATGAGCAGCAAGTCAAGAAGCCTGATCAAG...GGGTAAGCATTTCAGCAGTAAGATCAGAACAGAATGGGTTATTAGGCACCTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR-3UTR GCA 90 bp | GATCTTGATGTCAGCAGAAAACAAATTGCTATAAATCTTGTGGACAGGTGCCTATGTCCCTCAGGTCGATaGAAACTGGCACCAGAACAG | + |
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Preference number: 2 (lower is better) Translates to: DLDVSRKQIAINLVDRCLCPSGR*KLAPEQ Trigger: CTGTTCTGGTGCCAGTTTGCATCGACCTGAGGGACA...TAGGCACCTGTCCACAAGATTTATAGCAATTTGTTTTCTGCTGACATCAAGATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR-3UTR GCA 90 bp | CTTAAGTGTTTGCTGGCACAAAGTCTTGGCCTCTGGAAAAGTACTAGCCCAGCTTCAGGCTTCTTGACTTaGTGCTCATTCTTCATGTTT | + |
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Preference number: 2 (lower is better) Translates to: LKCLLAQSLGLWKSTSPASGFLT*CSFFMF Trigger: AAACATGAAGAATGAGCAGCAAGTCAAGAAGCCTGA...AGCTGGGCTAGTACTTTTCCAGAGGCCAAGACTTTGTGCCAGCAAACACTTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR-3UTR TCA 90 bp | CACAAAGTCTTGGCCTCTGGAAAAGTACTAGCCCAGCTGAGTACAAATAGACATAAAAATTTGCCAGCTTaGTCAGGCTTCTTGACTTGC | + |
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Preference number: 2 (lower is better) Translates to: HKVLASGKVLAQLSTNRHKNLPA*SGFLTC Trigger: GCAAGTCAAGAAGCCTGATCAAGCTGGCAAATTTTT...ATGTCTATTTGTACTCAGCTGGGCTAGTACTTTTCCAGAGGCCAAGACTTTGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR-3UTR TCA 90 bp | GATCTTGATGTCAGCAGAAAACAAATTGCTATAAATCTTGTGGACAGGTGCCTATACCCAGAGACAAAGTaGTCCCACTTCACACCCCTT | + |
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Preference number: 2 (lower is better) Translates to: DLDVSRKQIAINLVDRCLYPETK*SHFTPL Trigger: AAGGGGTGTGAAGTGGGATCACTTTGTCTCTGGGTA...TAGGCACCTGTCCACAAGATTTATAGCAATTTGTTTTCTGCTGACATCAAGATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR-3UTR GCA 90 bp | ACTGAAGAGCTGTTAAAATCAGGAGTGCATCTAATCATTTGCCTAAAGAAGAGAAGTCAGTGTGGTGCATaGCCAGCTGTTCTGTCCATG | + |
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Preference number: 2 (lower is better) Translates to: TEELLKSGVHLIICLKKRSQCGA*PAVLSM Trigger: CATGGACAGAACAGCTGGGCATGCACCACACTGACT...TCTCTTCTTTAGGCAAATGATTAGATGCACTCCTGATTTTAACAGCTCTTCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR-3UTR GCA 90 bp | GAAGAGCTGTTAAAATCAGGAGTGCATCTAATCATTTGCCTAAAGAAGAGACTTGAACAGTCAGTGTGGTaGATGCCCAGCTGTTCTGTC | + |
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Preference number: 2 (lower is better) Translates to: EELLKSGVHLIICLKKRLEQSVW*MPSCSV Trigger: GACAGAACAGCTGGGCATGCACCACACTGACTGTTC...AAGTCTCTTCTTTAGGCAAATGATTAGATGCACTCCTGATTTTAACAGCTCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR-3UTR GCA 90 bp | CACAAAGTCTTGGCCTCTGGAAAAGTACTAGCCCAGCTGAGTACAAATAGACATGGCTTCTTGACTTGCTaGTCATTCTTCATGTTTCTT | + |
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Preference number: 2 (lower is better) Translates to: HKVLASGKVLAQLSTNRHGFLTC*SFFMFL Trigger: AAGAAACATGAAGAATGAGCAGCAAGTCAAGAAGCC...ATGTCTATTTGTACTCAGCTGGGCTAGTACTTTTCCAGAGGCCAAGACTTTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR-3UTR GCA 90 bp | GTCTTGGCCTCTGGAAAAGTACTAGCCCAGCTGAGTACAAATAGACATAGATCTAATCTTGTGGACAGGTaGCTAATAACCCATTCTGTT | + |
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Preference number: 2 (lower is better) Translates to: VLASGKVLAQLSTNRHRSNLVDR*LITHSV Trigger: AACAGAATGGGTTATTAGGCACCTGTCCACAAGATT...AGATCTATGTCTATTTGTACTCAGCTGGGCTAGTACTTTTCCAGAGGCCAAGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR CAA 90 bp | AGAATTCAATTAAGGCTTTATTACAAAGTCAAAACTGTCAATTTGTaGCTTCCACTGCCTGGACCAGACTCTCCCTGTGAGACACTGATG | + |
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Preference number: 2 (lower is better) Translates to: RIQLRLYYKVKTVNL*LPLPGPDSPCETLM Trigger: CATCAGTGTCTCACAGGGAGAGTCTGGTCCAGGCAGTGGAAGCAACAAATTGACAGTTTTGACTTTGTAATAAAGCCTTAATTGAATTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR CAA 90 bp | TTCAGAATTCAATTAAGGCTTTATTACAAAGTCAAAACTGTCAATTaGTTGCTTCCACTGCCTGGACCAGACTCTCCCTGTGAGACACTG | + |
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Preference number: 2 (lower is better) Translates to: FRIQLRLYYKVKTVN*LLPLPGPDSPCETL Trigger: CAGTGTCTCACAGGGAGAGTCTGGTCCAGGCAGTGGAAGCAACAAATTGACAGTTTTGACTTTGTAATAAAGCCTTAATTGAATTCTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR-3UTR TCA 90 bp | ACTGAAGAGCTGTTAAAATCAGGAGTGCATCTAATCATTTGCCTAAAGAAGAGAATCCAAACTTTCCTGTaGAGTCTCAAGCCTATCAGA | + |
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Preference number: 2 (lower is better) Translates to: TEELLKSGVHLIICLKKRIQTFL*SLKPIR Trigger: TCTGATAGGCTTGAGACTTCACAGGAAAGTTTGGAT...TCTCTTCTTTAGGCAAATGATTAGATGCACTCCTGATTTTAACAGCTCTTCAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR CAA 90 bp | GATATGCCAACCATAGGCTGTGTAACTTTTATTCAACTAGTGTCTTaGCTGTCTCACAGATTCCCTACAGTAGTATACATGGTAACTTAT | + |
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Preference number: 2 (lower is better) Translates to: DMPTIGCVTFIQLVS*LSHRFPTVVYMVTY Trigger: ATAAGTTACCATGTATACTACTGTAGGGAATCTGTGAGACAGCAAAGACACTAGTTGAATAAAAGTTACACAGCCTATGGTTGGCATATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR-3UTR GCA 90 bp | TTTTATTCAACTAGTGTCTTTGCTGTCTCACAGATTCCCTACAGTAGTATACATCAATTTCACAAAGCTTaGTTATTTCCATGTTCAGGG | + |
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Preference number: 2 (lower is better) Translates to: FYSTSVFAVSQIPYSSIHQFHKA*LFPCSG Trigger: CCCTGAACATGGAAATAAGCAAGCTTTGTGAAATTG...ATGTATACTACTGTAGGGAATCTGTGAGACAGCAAAGACACTAGTTGAATAAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR GCA 72 bp | GCTCTCAAGTCCCTGTTCGACTGTCCCTCAGGTCGATaGAAACTGGCACCAGAACAGGGACCCCAGGGGGTC | + |
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Preference number: 3 (lower is better) Translates to: ALKSLFDCPSGR*KLAPEQGPQGV Trigger: GACCCCCTGGGGTCCCTGTTCTGGTGCCAGTTTGCATCGACCTGAGGGACAGTCGAACAGGGACTTGAGAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR CCA 72 bp | AGTCCCTGTTCGACTGTCCCTCAGGTCGATGCAAACTaGCACCAGAACAGGGACCCCAGGGGGTCGCAGAGA | + |
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Preference number: 3 (lower is better) Translates to: SPCSTVPQVDAN*HQNRDPRGSQR Trigger: TCTCTGCGACCCCCTGGGGTCCCTGTTCTGGTGCCAGTTTGCATCGACCTGAGGGACAGTCGAACAGGGACT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR GCA 72 bp | AGGCTTCTTGACTTGCTGCTCATTCTTCATGTTTCTTaGCCCCCGTTCTCATCCAGGTGCTCTCAAGTCCCT | + |
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Preference number: 3 (lower is better) Translates to: RLLDLLLILHVS*PPFSSRCSQVP Trigger: AGGGACTTGAGAGCACCTGGATGAGAACGGGGGGCAAGAAACATGAAGAATGAGCAGCAAGTCAAGAAGCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR TCA 72 bp | TTCCACTGCCTGGACCAGACTCTCCCTGTGAGACACTaGTGCCTAAGGAGAAAATTTCTGAACACACAGCAC | + |
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Preference number: 3 (lower is better) Translates to: FHCLDQTLPVRH*CLRRKFLNTQH Trigger: GTGCTGTGTGTTCAGAAATTTTCTCCTTAGGCATCAGTGTCTCACAGGGAGAGTCTGGTCCAGGCAGTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR TCA 72 bp | CTTATTTCCATGTTCAGGGAGAGGTCCAAGAGTGTCTaGGCTGAGGATGACATCATTGGACCAAGTTACTAT | + |
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Preference number: 3 (lower is better) Translates to: LISMFRERSKSV*AEDDIIGPSYY Trigger: ATAGTAACTTGGTCCAATGATGTCATCCTCAGCTCAGACACTCTTGGACCTCTCCCTGAACATGGAAATAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR TCA 72 bp | TCTAATCATTTGCCTAAAGAAGAGACTTCCCTAGGCTaGATTAAGGATGAGCAGTTGCCAAGAGGACCTATG | + |
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Preference number: 3 (lower is better) Translates to: SNHLPKEETSLG*IKDEQLPRGPM Trigger: CATAGGTCCTCTTGGCAACTGCTCATCCTTAATTCAGCCTAGGGAAGTCTCTTCTTTAGGCAAATGATTAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR-3UTR CAA 90 bp | TTTTATTCAACTAGTGTCTTTGCTGTCTCACAGATTCCCTACAGTAGTATACATGCTGTTCTGTCCATGTaGAATCTCAGGAAAAGGAGA | + |
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Preference number: 3 (lower is better) Translates to: FYSTSVFAVSQIPYSSIHAVLSM*NLRKRR Trigger: TCTCCTTTTCCTGAGATTCAACATGGACAGAACAGC...ATGTATACTACTGTAGGGAATCTGTGAGACAGCAAAGACACTAGTTGAATAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR GCA 72 bp | AGCAGAAAACAAATTGCTATAAATCTTGTGGACAGGTaGCTAATAACCCATTCTGTTCTGATCTTACTGCTG | + |
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Preference number: 3 (lower is better) Translates to: SRKQIAINLVDR*LITHSVLILLL Trigger: CAGCAGTAAGATCAGAACAGAATGGGTTATTAGGCACCTGTCCACAAGATTTATAGCAATTTGTTTTCTGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR-3UTR CAA 90 bp | TTTTATTCAACTAGTGTCTTTGCTGTCTCACAGATTCCCTACAGTAGTATACATCTGAGGATGACATCATaGGACCAAGTTACTATACTA | + |
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Preference number: 3 (lower is better) Translates to: FYSTSVFAVSQIPYSSIHLRMTS*DQVTIL Trigger: TAGTATAGTAACTTGGTCCAATGATGTCATCCTCAG...ATGTATACTACTGTAGGGAATCTGTGAGACAGCAAAGACACTAGTTGAATAAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR TCA 72 bp | GTACTAGCCCAGCTGAGTACAAATAGACATAGATCTTaGTGTCAGCAGAAAACAAATTGCTATAAATCTTGT | + |
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Preference number: 3 (lower is better) Translates to: VLAQLSTNRHRS*CQQKTNCYKSC Trigger: ACAAGATTTATAGCAATTTGTTTTCTGCTGACATCAAGATCTATGTCTATTTGTACTCAGCTGGGCTAGTAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| CDS-3UTR CCA 90 bp | ACTGTCCCTCAGGTCGATGCAAACTGGCACCAGAACAGGGACCCCAGGGGGTCGCTTAAAATGGTCAACTaGAAATACCCCTTTGTGCCA | + |
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Preference number: 4 (lower is better) Translates to: TVPQVDANWHQNRDPRGSLKMVN*KYPFVP Trigger: TGGCACAAAGGGGTATTTCCAGTTGACCATTTTAAG...CGACCCCCTGGGGTCCCTGTTCTGGTGCCAGTTTGCATCGACCTGAGGGACAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| CDS-3UTR TCA 90 bp | GGTTCCAGTCAGATCAAGGCTTCTGATCTATTTCCGTTTGCCCCCATGATGTGTTTAAAATGGAGACTGTaGGCAGGAGCTCCTGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: GSSQIKASDLFPFAPMMCLKWRL*AGAPAR Trigger: CCTGGCAGGAGCTCCTGCTCACAGTCTCCATTTTAA...ACACATCATGGGGGCAAACGGAAATAGATCAGAAGCCTTGATCTGACTGGAACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR CAA 72 bp | AGTCAGTGTGGTGCATGCCCAGCTGTTCTGTCCATGTaGAATCTCAGGAAAAGGAGATGCCCAAAAGACCTA | + |
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Preference number: 4 (lower is better) Translates to: SQCGACPAVLSM*NLRKRRCPKDL Trigger: TAGGTCTTTTGGGCATCTCCTTTTCCTGAGATTCAACATGGACAGAACAGCTGGGCATGCACCACACTGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR TCA 90 bp | GACAGGTGCCTAATAACCCATTCTGTTCTGATCTTACTGCTGAAATGCTTACCCTTAAAATGGAGACTGTaGGCAGGAGCTCCTGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: DRCLITHSVLILLLKCLPLKWRL*AGAPAR Trigger: CCTGGCAGGAGCTCCTGCTCACAGTCTCCATTTTAA...GGGTAAGCATTTCAGCAGTAAGATCAGAACAGAATGGGTTATTAGGCACCTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| CDS-3UTR TCA 90 bp | TGCTGGCACAAAGTCTTGGCCTCTGGAAAAGTACTAGCCCAGCTGAGTACAAATTACCAGGAAAGGGTTTaGACATTCTCTGGCAAGTTT | + |
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Preference number: 4 (lower is better) Translates to: CWHKVLASGKVLAQLSTNYQERV*TFSGKF Trigger: AAACTTGCCAGAGAATGTTCAAACCCTTTCCTGGTA...ATTTGTACTCAGCTGGGCTAGTACTTTTCCAGAGGCCAAGACTTTGTGCCAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| CDS-3UTR TCA 90 bp | CACAAAGTCTTGGCCTCTGGAAAAGTACTAGCCCAGCTGAGTACAAATAGACATTGCCAGACAAAGCCTTaGAGATTCTCCGGCAGATTA | + |
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Preference number: 4 (lower is better) Translates to: HKVLASGKVLAQLSTNRHCQTKP*RFSGRL Trigger: TAATCTGCCGGAGAATCTTCAAGGCTTTGTCTGGCA...ATGTCTATTTGTACTCAGCTGGGCTAGTACTTTTCCAGAGGCCAAGACTTTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| 3UTR CAA 72 bp | ACATTAACTGCCTTAAGTGTTTGCTGGCACAAAGTCTaGGCCTCTGGAAAAGTACTAGCCCAGCTGAGTACA | + |
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Preference number: 4 (lower is better) Translates to: TLTALSVCWHKV*ASGKVLAQLST Trigger: TGTACTCAGCTGGGCTAGTACTTTTCCAGAGGCCAAGACTTTGTGCCAGCAAACACTTAAGGCAGTTAATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| CDS-3UTR CCA 90 bp | CTTAAGTGTTTGCTGGCACAAAGTCTTGGCCTCTGGAAAAGTACTAGCCCAGCTGGTTTGAACATTCTCTaGCAAGTTTTGCACAAACAG | + |
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Preference number: 4 (lower is better) Translates to: LKCLLAQSLGLWKSTSPAGLNIL*QVLHKQ Trigger: CTGTTTGTGCAAAACTTGCCAGAGAATGTTCAAACC...AGCTGGGCTAGTACTTTTCCAGAGGCCAAGACTTTGTGCCAGCAAACACTTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| CDS-3UTR TCA 90 bp | TTGGACCAAGTTACTATACTACTGTCTGCAGGTTCCAGTCAGATCAAGGCTTCTTACCAGGAAAGGGTTTaGACATTCTCTGGCAAGTTT | + |
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Preference number: 4 (lower is better) Translates to: LDQVTILLSAGSSQIKASYQERV*TFSGKF Trigger: AAACTTGCCAGAGAATGTTCAAACCCTTTCCTGGTA...AGAAGCCTTGATCTGACTGGAACCTGCAGACAGTAGTATAGTAACTTGGTCCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR TCA 90 bp | GACAGGTGCCTAATAACCCATTCTGTTCTGATCTTACTGCTGAAATGCTTACCCCACAATGGCAGATTCTaGCATCAAATCCACAGGTAT | + |
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Preference number: 4 (lower is better) Translates to: DRCLITHSVLILLLKCLPHNGRF*HQIHRY Trigger: ATACCTGTGGATTTGATGTCAGAATCTGCCATTGTG...GGGTAAGCATTTCAGCAGTAAGATCAGAACAGAATGGGTTATTAGGCACCTGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| CDS-3UTR GCA 90 bp | TGCTGGCACAAAGTCTTGGCCTCTGGAAAAGTACTAGCCCAGCTGAGTACAAATAGCTATCACGTGTCTTaGAATTTCAAACATCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: CWHKVLASGKVLAQLSTNSYHVS*NFKHLE Trigger: CTCAAGATGTTTGAAATTGCAAGACACGTGATAGCT...ATTTGTACTCAGCTGGGCTAGTACTTTTCCAGAGGCCAAGACTTTGTGCCAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| CDS-3UTR CCA 90 bp | TTGGACCAAGTTACTATACTACTGTCTGCAGGTTCCAGTCAGATCAAGGCTTCTGGTTTGAACATTCTCTaGCAAGTTTTGCACAAACAG | + |
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Preference number: 4 (lower is better) Translates to: LDQVTILLSAGSSQIKASGLNIL*QVLHKQ Trigger: CTGTTTGTGCAAAACTTGCCAGAGAATGTTCAAACC...AGAAGCCTTGATCTGACTGGAACCTGCAGACAGTAGTATAGTAACTTGGTCCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR CAA 72 bp | CAATTAAGGCTTTATTACAAAGTCAAAACTGTCAATTaGTTGCTTCCACTGCCTGGACCAGACTCTCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: QLRLYYKVKTVN*LLPLPGPDSPC Trigger: ACAGGGAGAGTCTGGTCCAGGCAGTGGAAGCAACAAATTGACAGTTTTGACTTTGTAATAAAGCCTTAATTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR TCA 90 bp | TTGGACCAAGTTACTATACTACTGTCTGCAGGTTCCAGTCAGATCAAGGCTTCTACTTACTGTTTACTTTaGGGTACACAATGGCAGATT | + |
|
Preference number: 4 (lower is better) Translates to: LDQVTILLSAGSSQIKASTYCLL*GTQWQI Trigger: AATCTGCCATTGTGTACCTCAAAGTAAACAGTAAGT...AGAAGCCTTGATCTGACTGGAACCTGCAGACAGTAGTATAGTAACTTGGTCCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR TCA 90 bp | TTTTATTCAACTAGTGTCTTTGCTGTCTCACAGATTCCCTACAGTAGTATACATTGCCAGACAAAGCCTTaGAGATTCTCCGGCAGATTA | + |
|
Preference number: 4 (lower is better) Translates to: FYSTSVFAVSQIPYSSIHCQTKP*RFSGRL Trigger: TAATCTGCCGGAGAATCTTCAAGGCTTTGTCTGGCA...ATGTATACTACTGTAGGGAATCTGTGAGACAGCAAAGACACTAGTTGAATAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR GCA 90 bp | GTCCATGTTGAATCTCAGGAAAAGGAGATGCCCAAAAGACCTAGTCTAATCATGAGCTATCACGTGTCTTaGAATTTCAAACATCTTGAG | + |
|
Preference number: 4 (lower is better) Translates to: VHVESQEKEMPKRPSLIMSYHVS*NFKHLE Trigger: CTCAAGATGTTTGAAATTGCAAGACACGTGATAGCT...CATGATTAGACTAGGTCTTTTGGGCATCTCCTTTTCCTGAGATTCAACATGGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR TCA 90 bp | GTAACTTTTATTCAACTAGTGTCTTTGCTGTCTCACAGATTCCCTACAGTAGTACACAATGGCAGATTCTaGCATCAAATCCACAGGTAT | + |
|
Preference number: 4 (lower is better) Translates to: VTFIQLVSLLSHRFPTVVHNGRF*HQIHRY Trigger: ATACCTGTGGATTTGATGTCAGAATCTGCCATTGTG...TACTACTGTAGGGAATCTGTGAGACAGCAAAGACACTAGTTGAATAAAAGTTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| 3UTR CAA 72 bp | ACCATAGGCTGTGTAACTTTTATTCAACTAGTGTCTTaGCTGTCTCACAGATTCCCTACAGTAGTATACATG | + |
|
Preference number: 4 (lower is better) Translates to: TIGCVTFIQLVS*LSHRFPTVVYM Trigger: CATGTATACTACTGTAGGGAATCTGTGAGACAGCAAAGACACTAGTTGAATAAAAGTTACACAGCCTATGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR TCA 90 bp | ACTGAAGAGCTGTTAAAATCAGGAGTGCATCTAATCATTTGCCTAAAGAAGAGACAATTTCAAACATCTTaGGCAGTTTACCTCCTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: TEELLKSGVHLIICLKKRQFQTS*AVYLLC Trigger: ACAAAGGAGGTAAACTGCTCAAGATGTTTGAAATTG...TCTCTTCTTTAGGCAAATGATTAGATGCACTCCTGATTTTAACAGCTCTTCAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR CCA 90 bp | TTTTATTCAACTAGTGTCTTTGCTGTCTCACAGATTCCCTACAGTAGTATACATCTTAAAATGGTCAACTaGAAATACCCCTTTGTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: FYSTSVFAVSQIPYSSIHLKMVN*KYPFVP Trigger: TGGCACAAAGGGGTATTTCCAGTTGACCATTTTAAG...ATGTATACTACTGTAGGGAATCTGTGAGACAGCAAAGACACTAGTTGAATAAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR CCA 90 bp | ACTGAAGAGCTGTTAAAATCAGGAGTGCATCTAATCATTTGCCTAAAGAAGAGATTGGTGAGGAATGAATaGCTTGCTATCTTAAAATGG | + |
|
Preference number: 4 (lower is better) Translates to: TEELLKSGVHLIICLKKRLVRNE*LAILKW Trigger: CCATTTTAAGATAGCAAGCCATTCATTCCTCACCAA...TCTCTTCTTTAGGCAAATGATTAGATGCACTCCTGATTTTAACAGCTCTTCAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR CCA 90 bp | TTTTATTCAACTAGTGTCTTTGCTGTCTCACAGATTCCCTACAGTAGTATACATCTTGCTATCTTAAAATaGTCAACTGGAAATACCCCT | + |
|
Preference number: 4 (lower is better) Translates to: FYSTSVFAVSQIPYSSIHLAILK*STGNTP Trigger: AGGGGTATTTCCAGTTGACCATTTTAAGATAGCAAG...ATGTATACTACTGTAGGGAATCTGTGAGACAGCAAAGACACTAGTTGAATAAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR CCA 90 bp | AAAACAAATTGCTATAAATCTTGTGGACAGGTGCCTAATAACCCATTCTGTTCTTTGGTGAGGAATGAATaGCTTGCTATCTTAAAATGG | + |
|
Preference number: 4 (lower is better) Translates to: KTNCYKSCGQVPNNPFCSLVRNE*LAILKW Trigger: CCATTTTAAGATAGCAAGCCATTCATTCCTCACCAA...AGAACAGAATGGGTTATTAGGCACCTGTCCACAAGATTTATAGCAATTTGTTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| CDS GCA 90 bp | CTGTGTCTTCCTGTGAGACCTTCGAGAGCAGCAGGGATCCATCACTaGATACGGTCAGTCTGTCTAAATATGTGCGCCCCAGCATGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: LCLPVRPSRAAGIHH*IRSVCLNMCAPAWL Trigger: CAACCATGCTGGGGCGCACATATTTAGACAGACTGACCGTATGCAGTGATGGATCCCTGCTGCTCTCGAAGGTCTCACAGGAAGACACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032520.9 ENSMUST00000108483.2 ENSMUST00000108487.9 |
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| CDS-3UTR CAA 90 bp | ACTGTCCCTCAGGTCGATGCAAACTGGCACCAGAACAGGGACCCCAGGGGGTCGATTCTCTGGCAAGTTTaGCACAAACAGAAGAACATT | + |
|
Preference number: 5 (lower is better) Translates to: TVPQVDANWHQNRDPRGSILWQV*HKQKNI Trigger: AATGTTCTTCTGTTTGTGCAAAACTTGCCAGAGAAT...CGACCCCCTGGGGTCCCTGTTCTGGTGCCAGTTTGCATCGACCTGAGGGACAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| CDS-3UTR CAA 90 bp | CTTAAGTGTTTGCTGGCACAAAGTCTTGGCCTCTGGAAAAGTACTAGCCCAGCTCCCAGCATGGTTGAATaGGTGAGGAATGAATGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: LKCLLAQSLGLWKSTSPAPSMVE*VRNEWL Trigger: AAGCCATTCATTCCTCACCAATTCAACCATGCTGGG...AGCTGGGCTAGTACTTTTCCAGAGGCCAAGACTTTGTGCCAGCAAACACTTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| CDS-3UTR CAA 90 bp | GGTTCCAGTCAGATCAAGGCTTCTGATCTATTTCCGTTTGCCCCCATGATGTGTGTACCAGGAAAGGGTTaGAACATTCTCTGGCAAGTT | + |
|
Preference number: 5 (lower is better) Translates to: GSSQIKASDLFPFAPMMCVPGKG*NILWQV Trigger: AACTTGCCAGAGAATGTTCAAACCCTTTCCTGGTAC...ACACATCATGGGGGCAAACGGAAATAGATCAGAAGCCTTGATCTGACTGGAACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR CAA 90 bp | CCACTGCCTGGACCAGACTCTCCCTGTGAGACACTGATGCCTAAGGAGAAAATTCACTTACTGTTTACTTaGAGGTACACAATGGCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: PLPGPDSPCETLMPKEKIHLLFT*RYTMAD Trigger: ATCTGCCATTGTGTACCTCAAAGTAAACAGTAAGTG...AATTTTCTCCTTAGGCATCAGTGTCTCACAGGGAGAGTCTGGTCCAGGCAGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR CAA 90 bp | GTCAATTTGTTGCTTCCACTGCCTGGACCAGACTCTCCCTGTGAGACACTGATGATTCTCTGGCAAGTTTaGCACAAACAGAAGAACATT | + |
|
Preference number: 5 (lower is better) Translates to: VNLLLPLPGPDSPCETLMILWQV*HKQKNI Trigger: AATGTTCTTCTGTTTGTGCAAAACTTGCCAGAGAAT...CATCAGTGTCTCACAGGGAGAGTCTGGTCCAGGCAGTGGAAGCAACAAATTGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR CAA 90 bp | TTGGACCAAGTTACTATACTACTGTCTGCAGGTTCCAGTCAGATCAAGGCTTCTCCCAGCATGGTTGAATaGGTGAGGAATGAATGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: LDQVTILLSAGSSQIKASPSMVE*VRNEWL Trigger: AAGCCATTCATTCCTCACCAATTCAACCATGCTGGG...AGAAGCCTTGATCTGACTGGAACCTGCAGACAGTAGTATAGTAACTTGGTCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR CAA 90 bp | CACAAAGTCTTGGCCTCTGGAAAAGTACTAGCCCAGCTGAGTACAAATAGACATGTACCAGGAAAGGGTTaGAACATTCTCTGGCAAGTT | + |
|
Preference number: 5 (lower is better) Translates to: HKVLASGKVLAQLSTNRHVPGKG*NILWQV Trigger: AACTTGCCAGAGAATGTTCAAACCCTTTCCTGGTAC...ATGTCTATTTGTACTCAGCTGGGCTAGTACTTTTCCAGAGGCCAAGACTTTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| CDS TCA 90 bp | GTGGTTGTTGATTGCCTGAAGCCCATCTTCCATGTTTGTTTACTTTaGGGTACACAATGGCAGATTCTGACATCAAATCCACAGGTATGG | + |
|
Preference number: 5 (lower is better) Translates to: VVVDCLKPIFHVCLL*GTQWQILTSNPQVW Trigger: CCATACCTGTGGATTTGATGTCAGAATCTGCCATTGTGTACCTCAAAGTAAACAAACATGGAAGATGGGCTTCAGGCAATCAACAACCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032520.9 |
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| CDS CCA 90 bp | GAGCAGTTTACCTCCTTTGTACCAGGAAAGGGTTTGAACATTCTCTaGCAAGTTTTGCACAAACAGAAGAACATTATCCCCTTCAACAGC | + |
|
Preference number: 5 (lower is better) Translates to: EQFTSFVPGKGLNIL*QVLHKQKNIIPFNS Trigger: GCTGTTGAAGGGGATAATGTTCTTCTGTTTGTGCAAAACTTGCCAGAGAATGTTCAAACCCTTTCCTGGTACAAAGGAGGTAAACTGCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032520.9 ENSMUST00000108483.2 ENSMUST00000108487.9 |
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| CDS TCA 90 bp | TTGTTTCTTCGACATCCTTTGTTGATGTGGTGGTTGTTGATTGCCTaGAGCCCATCTTCCATGTTTGTTTACTTTGAGGTACACAATGGC | + |
|
Preference number: 5 (lower is better) Translates to: LFLRHPLLMWWLLIA*SPSSMFVYFEVHNG Trigger: GCCATTGTGTACCTCAAAGTAAACAAACATGGAAGATGGGCTTCAGGCAATCAACAACCACCACATCAACAAAGGATGTCGAAGAAACAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032520.9 |
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| CDS-3UTR CAA 90 bp | GTCTTGGCCTCTGGAAAAGTACTAGCCCAGCTGAGTACAAATAGACATAGATCTTTTCACGTCTTGAGGTaGTATCAAGTATTTGTAGAG | + |
|
Preference number: 5 (lower is better) Translates to: VLASGKVLAQLSTNRHRSFHVLR*YQVFVE Trigger: CTCTACAAATACTTGATACAACCTCAAGACGTGAAA...AGATCTATGTCTATTTGTACTCAGCTGGGCTAGTACTTTTCCAGAGGCCAAGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| CDS TCA 90 bp | TCAAACATCTTGAGCAGTTTACCTCCTTTGTACCAGGAAAGGGTTTaGACATTCTCTGGCAAGTTTTGCACAAACAGAAGAACATTATCC | + |
|
Preference number: 5 (lower is better) Translates to: SNILSSLPPLYQERV*TFSGKFCTNRRTLS Trigger: GGATAATGTTCTTCTGTTTGTGCAAAACTTGCCAGAGAATGTTCAAACCCTTTCCTGGTACAAAGGAGGTAAACTGCTCAAGATGTTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032520.9 ENSMUST00000108483.2 ENSMUST00000108487.9 |
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| CDS-3UTR CAA 90 bp | TCAAGTTCAAGCAATTTCACAAAGCTTGCTTATTTCCATGTTCAGGGAGAGGTCGCAATTTCAAACATCTaGAGCAGTTTACCTCCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: SSSSNFTKLAYFHVQGEVAISNI*SSLPPL Trigger: CAAAGGAGGTAAACTGCTCAAGATGTTTGAAATTGC...GACCTCTCCCTGAACATGGAAATAAGCAAGCTTTGTGAAATTGCTTGAACTTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR CAA 90 bp | TCAAGTTCAAGCAATTTCACAAAGCTTGCTTATTTCCATGTTCAGGGAGAGGTCTTTCACGTCTTGAGGTaGTATCAAGTATTTGTAGAG | + |
|
Preference number: 5 (lower is better) Translates to: SSSSNFTKLAYFHVQGEVFHVLR*YQVFVE Trigger: CTCTACAAATACTTGATACAACCTCAAGACGTGAAA...GACCTCTCCCTGAACATGGAAATAAGCAAGCTTTGTGAAATTGCTTGAACTTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108483.2 |
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| CDS-3UTR CAA 90 bp | AAAACAAATTGCTATAAATCTTGTGGACAGGTGCCTAATAACCCATTCTGTTCTAGACAGTTGTTTACTTaGAGGTACACAATGGCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: KTNCYKSCGQVPNNPFCSRQLFT*RYTMAD Trigger: ATCTGCCATTGTGTACCTCAAAGTAAACAACTGTCT...AGAACAGAATGGGTTATTAGGCACCTGTCCACAAGATTTATAGCAATTTGTTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108487.9 |
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| CDS GCA 72 bp | CCTGTGAGACCTTCGAGAGCAGCAGGGATCCATCACTaGATACGGTCAGTCTGTCTAAATATGTGCGCCCCA | + |
|
Preference number: 6 (lower is better) Translates to: PVRPSRAAGIHH*IRSVCLNMCAP Trigger: TGGGGCGCACATATTTAGACAGACTGACCGTATGCAGTGATGGATCCCTGCTGCTCTCGAAGGTCTCACAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032520.9 ENSMUST00000108483.2 ENSMUST00000108487.9 |
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| CDS GCA 72 bp | CAGCATGTTAAAATGGAGACTGTGAGCAGGAGCTCCTaGCAGGATGTACAGTCTTTACAGGAAAGTGCATCA | + |
|
Preference number: 6 (lower is better) Translates to: QHVKMETVSRSS*QDVQSLQESAS Trigger: TGATGCACTTTCCTGTAAAGACTGTACATCCTGGCAGGAGCTCCTGCTCACAGTCTCCATTTTAACATGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032520.9 ENSMUST00000108483.2 ENSMUST00000108487.9 |
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| CDS CCA 72 bp | TCAACAGCAATGGGAGGCACTGATTCAATAGTTATCTaGGCAGTAGTGGGAAGCAGCCAGCATGTTAAAATG | + |
|
Preference number: 6 (lower is better) Translates to: STAMGGTDSIVI*AVVGSSQHVKM Trigger: CATTTTAACATGCTGGCTGCTTCCCACTACTGCCCAGATAACTATTGAATCAGTGCCTCCCATTGCTGTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032520.9 ENSMUST00000108483.2 ENSMUST00000108487.9 |
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| CDS TCA 72 bp | CGACATCCTTTGTTGATGTGGTGGTTGTTGATTGCCTaGAGCCCATCTTCCATGTTTGTTTACTTTGAGGTA | + |
|
Preference number: 6 (lower is better) Translates to: RHPLLMWWLLIA*SPSSMFVYFEV Trigger: TACCTCAAAGTAAACAAACATGGAAGATGGGCTTCAGGCAATCAACAACCACCACATCAACAAAGGATGTCG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032520.9 |
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| CDS CAA 72 bp | GTACCAGGAAAGGGTTTGAACATTCTCTGGCAAGTTTaGCACAAACAGAAGAACATTATCCCCTTCAACAGC | + |
|
Preference number: 6 (lower is better) Translates to: VPGKGLNILWQV*HKQKNIIPFNS Trigger: GCTGTTGAAGGGGATAATGTTCTTCTGTTTGTGCAAAACTTGCCAGAGAATGTTCAAACCCTTTCCTGGTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032520.9 ENSMUST00000108483.2 ENSMUST00000108487.9 |
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| CDS CAA 72 bp | TTGGTAGCTATCACGTGTCTTGCAATTTCAAACATCTaGAGCAGTTTACCTCCTTTGTACCAGGAAAGGGTT | + |
|
Preference number: 6 (lower is better) Translates to: LVAITCLAISNI*SSLPPLYQERV Trigger: AACCCTTTCCTGGTACAAAGGAGGTAAACTGCTCAAGATGTTTGAAATTGCAAGACACGTGATAGCTACCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032520.9 ENSMUST00000108483.2 ENSMUST00000108487.9 |
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| CDS CAA 90 bp | GTCTCTGTACAAAGAATTCTGCACGCATTATTTCACGTCTTGAGGTaGTATCAAGTATTTGTAGAGTGTAGTATCCCGAGTCTTTTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: VSVQRILHALFHVLR*YQVFVECSIPSLFW Trigger: CCAGAAAAGACTCGGGATACTACACTCTACAAATACTTGATACAACCTCAAGACGTGAAATAATGCGTGCAGAATTCTTTGTACAGAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032520.9 ENSMUST00000108483.2 ENSMUST00000108487.9 |
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| CDS CAA 72 bp | AGAAACAGAAGAAAAGCACATGTCCACCTTCTGTATTaGTTTCTTCGACATCCTTTGTTGATGTGGTGGTTG | + |
|
Preference number: 6 (lower is better) Translates to: RNRRKAHVHLLY*FLRHPLLMWWL Trigger: CAACCACCACATCAACAAAGGATGTCGAAGAAACAAATACAGAAGGTGGACATGTGCTTTTCTTCTGTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032520.9 |
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| CDS CAA 90 bp | TTCAAACATCTTGAGCAGTTTACCTCCTTTGTACCAGGAAAGGGTTaGAACATTCTCTGGCAAGTTTTGCACAAACAGAAGAACATTATC | + |
|
Preference number: 6 (lower is better) Translates to: FKHLEQFTSFVPGKG*NILWQVLHKQKNII Trigger: GATAATGTTCTTCTGTTTGTGCAAAACTTGCCAGAGAATGTTCAAACCCTTTCCTGGTACAAAGGAGGTAAACTGCTCAAGATGTTTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032520.9 ENSMUST00000108483.2 ENSMUST00000108487.9 |
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| CDS CAA 72 bp | CAAAGAATTCTGCACGCATTATTTCACGTCTTGAGGTaGTATCAAGTATTTGTAGAGTGTAGTATCCCGAGT | + |
|
Preference number: 6 (lower is better) Translates to: QRILHALFHVLR*YQVFVECSIPS Trigger: ACTCGGGATACTACACTCTACAAATACTTGATACAACCTCAAGACGTGAAATAATGCGTGCAGAATTCTTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032520.9 ENSMUST00000108483.2 ENSMUST00000108487.9 |
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| CDS TCA 72 bp | TCTTCAATCCTAGGTGGCACAAACTCAATTTTAAGTTaGGAAGTAGGATGCTTTCTGAAGCCTAAAATTGGT | + |
|
Preference number: 6 (lower is better) Translates to: SSILGGTNSILS*EVGCFLKPKIG Trigger: ACCAATTTTAGGCTTCAGAAAGCATCCTACTTCTCAACTTAAAATTGAGTTTGTGCCACCTAGGATTGAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032520.9 ENSMUST00000108483.2 ENSMUST00000108487.9 |
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| CDS CCA 72 bp | CAGCAGAAGAACATCATCATTTTCTTCAATCCTAGGTaGCACAAACTCAATTTTAAGTTGAGAAGTAGGATG | + |
|
Preference number: 6 (lower is better) Translates to: QQKNIIIFFNPR*HKLNFKLRSRM Trigger: CATCCTACTTCTCAACTTAAAATTGAGTTTGTGCCACCTAGGATTGAAGAAAATGATGATGTTCTTCTGCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032520.9 ENSMUST00000108483.2 ENSMUST00000108487.9 |
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