Pregenerated sensors for CEACAM10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054169Ensembl transcript IDs: ENSMUST00000038069.9, ENSMUST00000206847.2, ENSMUST00000206850.2
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTTATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGCTGGCTGGTGGAAGGAGGTaGAGCAAGGCACCGTCAGCT | + |
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Preference number: 2 (lower is better) Translates to: VMRTLLLVEGGEARHRQLAGGRR*SKAPSA Trigger: AGCTGACGGTGCCTTGCTTCACCTCCTTCCACCAGC...CAGCTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 ENSMUST00000206850.2 |
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| 3UTR-3UTR CCA 90 bp | GTTATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGCTGTTCTTGGTGACACCTTaGAAGAACAGGGATCCATTG | + |
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Preference number: 2 (lower is better) Translates to: VMRTLLLVEGGEARHRQLFLVTP*KNRDPL Trigger: CAATGGATCCCTGTTCTTCCAAGGTGTCACCAAGAA...CAGCTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206850.2 |
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| 3UTR CAA 90 bp | TATATGATCTCTCTGTCGCTGTGTGCAGGCCCCAATATAATCTTATaGGAGGCTGTTATAAATCGTGCAATTTCATTTCTTTCACCCGCA | + |
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Preference number: 2 (lower is better) Translates to: YMISLSLCAGPNIIL*EAVINRAISFLSPA Trigger: TGCGGGTGAAAGAAATGAAATTGCACGATTTATAACAGCCTCCAATAAGATTATATTGGGGCCTGCACACAGCGACAGAGAGATCATATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206850.2 |
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| 3UTR TCA 72 bp | AGAAGTTATGCGGACTTTATTGCTGGTGGAAGGAGGTaGAGCAAGGCACCGTCAGCTGATGAAATCCCTGGG | + |
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Preference number: 3 (lower is better) Translates to: RSYADFIAGGRR*SKAPSADEIPG Trigger: CCCAGGGATTTCATCAGCTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAACTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 ENSMUST00000206850.2 |
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| 3UTR TCA 72 bp | GCATATCTAGTGCGTAGGCTCCCTCATCATTCTTGGTaGCACCTTGGAAGAACAGGGATCCATTGTTGTATA | + |
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Preference number: 3 (lower is better) Translates to: AYLVRRLPHHSW*HLGRTGIHCCI Trigger: TATACAACAATGGATCCCTGTTCTTCCAAGGTGTCACCAAGAATGATGAGGGAGCCTACGCACTAGATATGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206850.2 |
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| 3UTR GCA 72 bp | GGATCCATTGTTGTATATGATCTCTCTGTCGCTGTGTaGAGGCCCCAATATAATCTTATTGGAGGCTGTTAT | + |
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Preference number: 3 (lower is better) Translates to: GSIVVYDLSVAV*RPQYNLIGGCY Trigger: ATAACAGCCTCCAATAAGATTATATTGGGGCCTGCACACAGCGACAGAGAGATCATATACAACAATGGATCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206850.2 |
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| CDS-3UTR CCA 90 bp | GAAGTTATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGGCCTCAACGGTGACTTaGGCAGTAGTGGCAGGGCTC | + |
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Preference number: 4 (lower is better) Translates to: EVMRTLLLVEGGEARHRQASTVT*AVVAGL Trigger: GAGCCCTGCCACTACTGCCCAAGTCACCGTTGAGGC...CTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAACTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206850.2 |
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| CDS-3UTR GCA 90 bp | GTTATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGCTGCCAACCCAGGGAACCTaGCCTTTGTGGAGATGTGCT | + |
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Preference number: 4 (lower is better) Translates to: VMRTLLLVEGGEARHRQLPTQGT*PLWRCA Trigger: AGCACATCTCCACAAAGGGCAGGTTCCCTGGGTTGG...CAGCTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 ENSMUST00000206850.2 |
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| CDS-3UTR GCA 90 bp | TTGCAGAAGTTATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCCCAACCCAGGGAACCTaGCCTTTGTGGAGATGTGCT | + |
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Preference number: 4 (lower is better) Translates to: LQKLCGLYCWWKEVKQGTPTQGT*PLWRCA Trigger: AGCACATCTCCACAAAGGGCAGGTTCCCTGGGTTGG...GGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAACTTCTGCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 ENSMUST00000206850.2 |
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| CDS-3UTR TCA 90 bp | GAAGTTATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGCCTCATCATTCTTGGTaGCACCTTGGAAGAACAGGG | + |
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Preference number: 4 (lower is better) Translates to: EVMRTLLLVEGGEARHRQPHHSW*HLGRTG Trigger: CCCTGTTCTTCCAAGGTGTCACCAAGAATGATGAGG...CTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAACTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 |
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| CDS-3UTR GCA 90 bp | ATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGCTGATGAAGAACATTGTTGTCTaGAGTAACGTTGGGCGGCAC | + |
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Preference number: 4 (lower is better) Translates to: MRTLLLVEGGEARHRQLMKNIVV*SNVGRH Trigger: GTGCCGCCCAACGTTACTGCAGACAACAATGTTCTT...CATCAGCTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206850.2 |
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| CDS-3UTR GCA 90 bp | TTGCAGAAGTTATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCCTCTCTGCCGCTGTGTaGAAGCCCCATTTTACTCCT | + |
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Preference number: 4 (lower is better) Translates to: LQKLCGLYCWWKEVKQGTLSAAV*KPHFTP Trigger: AGGAGTAAAATGGGGCTTGCACACAGCGGCAGAGAG...GGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAACTTCTGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038069.9 |
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| 3UTR CAA 72 bp | TTCTTTCACCCGCAGTGGTTCCCCTGTACCAGTAAATaGCTCGGAGCGTCCGTGGCAGATTGTGAACAAGTA | + |
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Preference number: 4 (lower is better) Translates to: FFHPQWFPCTSK*LGASVADCEQV Trigger: TACTTGTTCACAATCTGCCACGGACGCTCCGAGCAATTTACTGGTACAGGGGAACCACTGCGGGTGAAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206850.2 |
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| CDS-3UTR TCA 90 bp | TTGCAGAAGTTATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCCCTCATCATTCTTGGTaGCACCTTGGAAGAACAGGG | + |
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Preference number: 4 (lower is better) Translates to: LQKLCGLYCWWKEVKQGTPHHSW*HLGRTG Trigger: CCCTGTTCTTCCAAGGTGTCACCAAGAATGATGAGG...GGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAACTTCTGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 |
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| CDS-3UTR GCA 90 bp | GAAGTTATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGAAGAACATTGTTGTCTaGAGTAACGTTGGGCGGCAC | + |
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Preference number: 4 (lower is better) Translates to: EVMRTLLLVEGGEARHRQKNIVV*SNVGRH Trigger: GTGCCGCCCAACGTTACTGCAGACAACAATGTTCTT...CTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAACTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206850.2 |
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| CDS-3UTR CCA 90 bp | ATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGCTGATGTTCTTGGTGACACCTTaGAAGAACAGGGATCCATTG | + |
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Preference number: 4 (lower is better) Translates to: MRTLLLVEGGEARHRQLMFLVTP*KNRDPL Trigger: CAATGGATCCCTGTTCTTCCAAGGTGTCACCAAGAA...CATCAGCTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 |
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| CDS-3UTR CCA 90 bp | GAAGTTATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGTTCTTGGTGACACCTTaGAAGAACAGGGATCCATTG | + |
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Preference number: 4 (lower is better) Translates to: EVMRTLLLVEGGEARHRQFLVTP*KNRDPL Trigger: CAATGGATCCCTGTTCTTCCAAGGTGTCACCAAGAA...CTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAACTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 |
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| CDS-3UTR TCA 90 bp | CGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGCTGATGAAAATCCATTGTTGTATATaGTCTCTCTGTCGCTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: RTLLLVEGGEARHRQLMKIHCCI*SLCRCV Trigger: CACACAGCGACAGAGAGATCATATACAACAATGGAT...TTTCATCAGCTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 |
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| CDS-3UTR TCA 90 bp | GAAGTTATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGATCCATTGTTGTATATaGTCTCTCTGTCGCTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: EVMRTLLLVEGGEARHRQIHCCI*SLCRCV Trigger: CACACAGCGACAGAGAGATCATATACAACAATGGAT...CTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAACTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 |
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| CDS-3UTR TCA 90 bp | ATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGCTGATGTACTGCTTTTTAGCGTaGACATTAAATTGCACAGGC | + |
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Preference number: 4 (lower is better) Translates to: MRTLLLVEGGEARHRQLMYCFLA*TLNCTG Trigger: GCCTGTGCAATTTAATGTTCACGCTAAAAAGCAGTA...CATCAGCTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 |
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| CDS-3UTR CCA 90 bp | CGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGCTGATGAAATTCTTGGTGACACTTTaGAAGAACAGGGATCCATTG | + |
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Preference number: 4 (lower is better) Translates to: RTLLLVEGGEARHRQLMKFLVTL*KNRDPL Trigger: CAATGGATCCCTGTTCTTCCAAAGTGTCACCAAGAA...TTTCATCAGCTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038069.9 |
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| 3UTR CAA 72 bp | TCATTCTTGGTGACACCTTGGAAGAACAGGGATCCATaGTTGTATATGATCTCTCTGTCGCTGTGTGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: SFLVTPWKNRDP*LYMISLSLCAG Trigger: GCCTGCACACAGCGACAGAGAGATCATATACAACAATGGATCCCTGTTCTTCCAAGGTGTCACCAAGAATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206850.2 |
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| CDS-3UTR CCA 90 bp | ATAATCTTATTGGAGGCTGTTATAAATCGTGCAATTTCATTTCTTTCACCCGCAGCCTCAACGGTGACTTaGGCAGTAGTGGCAGGGCTC | + |
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Preference number: 4 (lower is better) Translates to: IILLEAVINRAISFLSPAASTVT*AVVAGL Trigger: GAGCCCTGCCACTACTGCCCAAGTCACCGTTGAGGC...TGCGGGTGAAAGAAATGAAATTGCACGATTTATAACAGCCTCCAATAAGATTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206850.2 |
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| CDS-3UTR GCA 90 bp | CGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGCTGATGAAAGGCTGTTATAAATCGTaGAATTTCATTTCTTTCACC | + |
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Preference number: 4 (lower is better) Translates to: RTLLLVEGGEARHRQLMKGCYKS*NFISFT Trigger: GGTGAAAGAAATGAAATTGCACGATTTATAACAGCC...TTTCATCAGCTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 |
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| CDS-3UTR GCA 90 bp | GAAGTTATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGGGCTGTTATAAATCGTaGAATTTCATTTCTTTCACC | + |
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Preference number: 4 (lower is better) Translates to: EVMRTLLLVEGGEARHRQGCYKS*NFISFT Trigger: GGTGAAAGAAATGAAATTGCACGATTTATAACAGCC...CTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAACTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 |
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| 3UTR CAA 72 bp | TCTCTGTCGCTGTGTGCAGGCCCCAATATAATCTTATaGGAGGCTGTTATAAATCGTGCAATTTCATTTCTT | + |
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Preference number: 4 (lower is better) Translates to: SLSLCAGPNIIL*EAVINRAISFL Trigger: AAGAAATGAAATTGCACGATTTATAACAGCCTCCAATAAGATTATATTGGGGCCTGCACACAGCGACAGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206850.2 |
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| CDS-3UTR CAA 90 bp | GAAGTTATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGAGCCTCAACGGTGACTaGGGCAGTAGTGGCAGGGCT | + |
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Preference number: 5 (lower is better) Translates to: EVMRTLLLVEGGEARHRQSLNGD*GSSGRA Trigger: AGCCCTGCCACTACTGCCCAAGTCACCGTTGAGGCT...CTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAACTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206850.2 |
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| CDS-3UTR CAA 90 bp | CGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGCTGATGAAAAGCCTCAACGGTGACTaGGGCAGTAGTGGCAGGGCT | + |
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Preference number: 5 (lower is better) Translates to: RTLLLVEGGEARHRQLMKSLNGD*GSSGRA Trigger: AGCCCTGCCACTACTGCCCAAGTCACCGTTGAGGCT...TTTCATCAGCTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206850.2 |
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| CDS-3UTR CAA 90 bp | GTTATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGCTGAAGAACAGGGATCCATaGTTGTATATGATCTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: VMRTLLLVEGGEARHRQLKNRDP*LYMISL Trigger: CAGAGAGATCATATACAACAATGGATCCCTGTTCTT...CAGCTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 |
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| CDS-3UTR CAA 90 bp | CGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGCTGATGAAAACAAGTAGAAGAACATaGTTGTCTGCAGTAACGTTG | + |
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Preference number: 5 (lower is better) Translates to: RTLLLVEGGEARHRQLMKTSRRT*LSAVTL Trigger: CAACGTTACTGCAGACAACAATGTTCTTCTACTTGT...TTTCATCAGCTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206850.2 |
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| CDS-3UTR CAA 90 bp | GAAGTTATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCGTCAGAAGAACAGGGATCCATaGCTATATATTGTCTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: EVMRTLLLVEGGEARHRQKNRDP*LYIVSL Trigger: CAGAGAGACAATATATAGCAATGGATCCCTGTTCTT...CTGACGGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAACTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038069.9 |
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| CDS-3UTR CAA 90 bp | TTGCAGAAGTTATGCGGACTTTATTGCTGGTGGAAGGAGGTGAAGCAAGGCACCACAAGTAGAAGAACATaGTTGTCTGCAGTAACGTTG | + |
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Preference number: 5 (lower is better) Translates to: LQKLCGLYCWWKEVKQGTTSRRT*LSAVTL Trigger: CAACGTTACTGCAGACAACAATGTTCTTCTACTTGT...GGTGCCTTGCTTCACCTCCTTCCACCAGCAATAAAGTCCGCATAACTTCTGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206850.2 |
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| CDS-3UTR CAA 90 bp | AGCATCAGCCCTCTTTCCCAGAGTTCGGTTCCAGTTAGAAAGAGCAATGAAAGAAAGAACAGGGATCCATaGTTGTATATGATCTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: SISPLSQSSVPVRKSNERKNRDP*LYMISL Trigger: CAGAGAGATCATATACAACAATGGATCCCTGTTCTT...TCTTTCATTGCTCTTTCTAACTGGAACCGAACTCTGGGAAAGAGGGCTGATGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 |
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| CDS TCA 72 bp | CCCCTTCGGCAACGTTGGGCCGCACAGCCTCAACGGTaGCTTGGCCAGTGGTGGGAGGGCTCAAGGAGGGTA | + |
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Preference number: 6 (lower is better) Translates to: PLRQRWAAQPQR*LGQWWEGSRRV Trigger: TACCCTCCTTGAGCCCTCCCACCACTGGCCAAGTCACCGTTGAGGCTGTGCGGCCCAACGTTGCCGAAGGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 |
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| CDS CCA 72 bp | TCGGCAACGTTGGGCCGCACAGCCTCAACGGTGACTTaGCCAGTGGTGGGAGGGCTCAAGGAGGGTAAAAGT | + |
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Preference number: 6 (lower is better) Translates to: SATLGRTASTVT*PVVGGLKEGKS Trigger: ACTTTTACCCTCCTTGAGCCCTCCCACCACTGGCCAAGTCACCGTTGAGGCTGTGCGGCCCAACGTTGCCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038069.9 ENSMUST00000206847.2 |
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| CDS TCA 72 bp | GCATATATAATGTGTAGACTCCCTCATCATTCTTGGTaGCACTTTGGAAGAACAGGGATCCATTGCTATATA | + |
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Preference number: 6 (lower is better) Translates to: AYIMCRLPHHSW*HFGRTGIHCYI Trigger: TATATAGCAATGGATCCCTGTTCTTCCAAAGTGTCACCAAGAATGATGAGGGAGTCTACACATTATATATGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038069.9 |
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