Pregenerated sensors for CDX4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031326Ensembl transcript IDs: ENSMUST00000033689.3
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTTAAATCTTTCAGCACAGATTGCTATTTCCTCAGTAGGAGCCATGGAACCACGTGCCCAGCCCCCATATaGCAGCATGGAATAAGAGTG | + |
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Preference number: 2 (lower is better) Translates to: LKSFSTDCYFLSRSHGTTCPAPI*QHGIRV Trigger: CACTCTTATTCCATGCTGTCATATGGGGGCTGGGCA...CGTGGTTCCATGGCTCCTACTGAGGAAATAGCAATCTGTGCTGAAAGATTTAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| 3UTR-3UTR TCA 90 bp | GCTATTTCCTCAGTAGGAGCCATGGAACCACGAACCCCTTTTCTGACATTTCCTGTGGACTGCTTTCTTTaGGAATGCAAGGGTGTTTGT | + |
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Preference number: 2 (lower is better) Translates to: AISSVGAMEPRTPFLTFPVDCFL*ECKGVC Trigger: ACAAACACCCTTGCATTCTCAAAGAAAGCAGTCCAC...AGGAAATGTCAGAAAAGGGGTTCGTGGTTCCATGGCTCCTACTGAGGAAATAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| 3UTR-3UTR GCA 90 bp | ACAGTTCTTATTTTCAATCCCCCAGCAAGTAATTGTGACACCTTGTCTTTCAAAGGCCACCCTGCTCACTaGAGCACCTTTGCTTACCCA | + |
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Preference number: 2 (lower is better) Translates to: TVLIFNPPASNCDTLSFKGHPAH*STFAYP Trigger: TGGGTAAGCAAAGGTGCTGCAGTGAGCAGGGTGGCC...TTTGAAAGACAAGGTGTCACAATTACTTGCTGGGGGATTGAAAATAAGAACTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| 3UTR-3UTR CCA 90 bp | ACAGTTCTTATTTTCAATCCCCCAGCAAGTAATTGTGACACCTTGTCTTTCAAACCCCATATGACAGCATaGAATAAGAGTGGTCTGGGG | + |
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Preference number: 2 (lower is better) Translates to: TVLIFNPPASNCDTLSFKPHMTA*NKSGLG Trigger: CCCCAGACCACTCTTATTCCATGCTGTCATATGGGG...TTTGAAAGACAAGGTGTCACAATTACTTGCTGGGGGATTGAAAATAAGAACTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| 3UTR-3UTR GCA 90 bp | ACAGTTCTTATTTTCAATCCCCCAGCAAGTAATTGTGACACCTTGTCTTTCAAAATATCCAATCTCAACTaGCCTGCTGTTAGCTTAGAG | + |
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Preference number: 2 (lower is better) Translates to: TVLIFNPPASNCDTLSFKISNLN*PAVSLE Trigger: CTCTAAGCTAACAGCAGGGCAGTTGAGATTGGATAT...TTTGAAAGACAAGGTGTCACAATTACTTGCTGGGGGATTGAAAATAAGAACTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| 3UTR-3UTR CAA 90 bp | GCCCCAGGCCACCCTGCTCACTGCAGCACCTTTGCTTACCCAGACCTATGTGTTCGTGTGTCTACTTGTTaGGAATTGTGTCTTGTAAGG | + |
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Preference number: 3 (lower is better) Translates to: APGHPAHCSTFAYPDLCVRVSTC*ELCLVR Trigger: CCTTACAAGACACAATTCCAAACAAGTAGACACACG...AACACATAGGTCTGGGTAAGCAAAGGTGCTGCAGTGAGCAGGGTGGCCTGGGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| 3UTR-3UTR CAA 90 bp | GGAGCCATGGAACCACGAACCCCTTTTCTGACATTTCCTTTAGGGATGGGAAAAGGTGGACTGCTTTCTTaGAGAATGCAAGGGTGTTTG | + |
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Preference number: 3 (lower is better) Translates to: GAMEPRTPFLTFPLGMGKGGLLS*RMQGCL Trigger: CAAACACCCTTGCATTCTCAAAGAAAGCAGTCCACC...TTTTCCCATCCCTAAAGGAAATGTCAGAAAAGGGGTTCGTGGTTCCATGGCTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| 3UTR-3UTR CAA 90 bp | GGAGCCATGGAACCACGAACCCCTTTTCTGACATTTCCTTTAGGGATGGGAAAAAAGTTTCAAGGGCTCTaGAGTCTAGACTTTAAGGAG | + |
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Preference number: 3 (lower is better) Translates to: GAMEPRTPFLTFPLGMGKKFQGL*SLDFKE Trigger: CTCCTTAAAGTCTAGACTCAAGAGCCCTTGAAACTT...TTTTCCCATCCCTAAAGGAAATGTCAGAAAAGGGGTTCGTGGTTCCATGGCTCC 46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| 3UTR-3UTR CAA 90 bp | GCTATTTCCTCAGTAGGAGCCATGGAACCACGAACCCCTTTTCTGACATTTCCTGAATATCTATCTGTCTaGCTAGCAACTCAGTTAACC | + |
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Preference number: 3 (lower is better) Translates to: AISSVGAMEPRTPFLTFPEYLSV*LATQLT Trigger: GGTTAACTGAGTTGCTAGCAAGACAGATAGATATTC...AGGAAATGTCAGAAAAGGGGTTCGTGGTTCCATGGCTCCTACTGAGGAAATAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR GCA 90 bp | GGAGCCATGGAACCACGAACCCCTTTTCTGACATTTCCTTTAGGGATGGGAAAAGCAGAGGACTACCACTaGCCCCAGAGGTGCCCACTC | + |
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Preference number: 4 (lower is better) Translates to: GAMEPRTPFLTFPLGMGKAEDYH*PQRCPL Trigger: GAGTGGGCACCTCTGGGGGCAGTGGTAGTCCTCTGC...TTTTCCCATCCCTAAAGGAAATGTCAGAAAAGGGGTTCGTGGTTCCATGGCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR CCA 90 bp | GGAGCCATGGAACCACGAACCCCTTTTCTGACATTTCCTTTAGGGATGGGAAAATGTGACGGCTCCTGCTaGGAGAAGTGGCGCCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: GAMEPRTPFLTFPLGMGKCDGSC*EKWRLR Trigger: CCTCAGGCGCCACTTCTCCCAGCAGGAGCCGTCACA...TTTTCCCATCCCTAAAGGAAATGTCAGAAAAGGGGTTCGTGGTTCCATGGCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR GCA 90 bp | GGAGCCATGGAACCACGAACCCCTTTTCTGACATTTCCTTTAGGGATGGGAAAATGGTGGGGCCCAGAGTaGTGTAGTCTGGGGATCCGA | + |
|
Preference number: 4 (lower is better) Translates to: GAMEPRTPFLTFPLGMGKWWGPE*CSLGIR Trigger: TCGGATCCCCAGACTACAGCACTCTGGGCCCCACCA...TTTTCCCATCCCTAAAGGAAATGTCAGAAAAGGGGTTCGTGGTTCCATGGCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR CCA 90 bp | CCCCAGGCCACCCTGCTCACTGCAGCACCTTTGCTTACCCAGACCTATGTGTTTCGTGAGGATCCATGTTaGACATATGAGGGTAACCCA | + |
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Preference number: 4 (lower is better) Translates to: PQATLLTAAPLLTQTYVFREDPC*TYEGNP Trigger: TGGGTTACCCTCATATGTCCAACATGGATCCTCACG...AAACACATAGGTCTGGGTAAGCAAAGGTGCTGCAGTGAGCAGGGTGGCCTGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR CCA 90 bp | CCCCAGGCCACCCTGCTCACTGCAGCACCTTTGCTTACCCAGACCTATGTGTTTAGGTCATGTCATTCATaGGCACTGTGCCCATTGTAC | + |
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Preference number: 4 (lower is better) Translates to: PQATLLTAAPLLTQTYVFRSCHS*ALCPLY Trigger: GTACAATGGGCACAGTGCCCATGAATGACATGACCT...AAACACATAGGTCTGGGTAAGCAAAGGTGCTGCAGTGAGCAGGGTGGCCTGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR CCA 90 bp | GCTATTTCCTCAGTAGGAGCCATGGAACCACGAACCCCTTTTCTGACATTTCCTCTGTGCCCATTGTACTaGGCGGCCCAGGGTATGTAC | + |
|
Preference number: 4 (lower is better) Translates to: AISSVGAMEPRTPFLTFPLCPLY*AAQGMY Trigger: GTACATACCCTGGGCCGCCCAGTACAATGGGCACAG...AGGAAATGTCAGAAAAGGGGTTCGTGGTTCCATGGCTCCTACTGAGGAAATAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR TCA 90 bp | CTTAAATCTTTCAGCACAGATTGCTATTTCCTCAGTAGGAGCCATGGAACCACGGCAGTTCTCCGGGGCTaGTGGAGCCAGAGTCACTTT | + |
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Preference number: 4 (lower is better) Translates to: LKSFSTDCYFLSRSHGTTAVLRG*WSQSHF Trigger: AAAGTGACTCTGGCTCCATCAGCCCCGGAGAACTGC...CGTGGTTCCATGGCTCCTACTGAGGAAATAGCAATCTGTGCTGAAAGATTTAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR TCA 90 bp | AACTCATCGTGTGTCTACTTGTTTGGAATTGTGTCTTGTAAGGAATTATATCCAGGGCGGACTGTAGGGTaGGCTCCAGGCTCCCAGCGA | + |
|
Preference number: 4 (lower is better) Translates to: NSSCVYLFGIVSCKELYPGRTVG*APGSQR Trigger: TCGCTGGGAGCCTGGAGCTCACCCTACAGTCCGCCC...TGGATATAATTCCTTACAAGACACAATTCCAAACAAGTAGACACACGATGAGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR GCA 90 bp | CTTAAATCTTTCAGCACAGATTGCTATTTCCTCAGTAGGAGCCATGGAACCACGTGGGTAAACTGGGGCTaGAGTAAAGTTGGAGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LKSFSTDCYFLSRSHGTTWVNWG*SKVGGR Trigger: CCTGCCTCCAACTTTACTGCAGCCCCAGTTTACCCA...CGTGGTTCCATGGCTCCTACTGAGGAAATAGCAATCTGTGCTGAAAGATTTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR GCA 90 bp | AACTCATCGTGTGTCTACTTGTTTGGAATTGTGTCTTGTAAGGAATTATATCCAGGCTGTGACGGCTCCTaGTGGGAGAAGTGGCGCCTG | + |
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Preference number: 4 (lower is better) Translates to: NSSCVYLFGIVSCKELYPGCDGS*WEKWRL Trigger: CAGGCGCCACTTCTCCCAGCAGGAGCCGTCACAGCC...TGGATATAATTCCTTACAAGACACAATTCCAAACAAGTAGACACACGATGAGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR CCA 90 bp | ACAGTTCTTATTTTCAATCCCCCAGCAAGTAATTGTGACACCTTGTCTTTCAAATGCTTGCACCGCTGGTaGGGCCCAGAGTGCTGTAGT | + |
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Preference number: 4 (lower is better) Translates to: TVLIFNPPASNCDTLSFKCLHRW*GPECCS Trigger: ACTACAGCACTCTGGGCCCCACCAGCGGTGCAAGCA...TTTGAAAGACAAGGTGTCACAATTACTTGCTGGGGGATTGAAAATAAGAACTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR CCA 90 bp | CTTAAATCTTTCAGCACAGATTGCTATTTCCTCAGTAGGAGCCATGGAACCACGCTGCTGTATCTCGATTaGCTGAAATCCACGGACAGC | + |
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Preference number: 4 (lower is better) Translates to: LKSFSTDCYFLSRSHGTTLLYLD*LKSTDS Trigger: GCTGTCCGTGGATTTCAGCCAATCGAGATACAGCAG...CGTGGTTCCATGGCTCCTACTGAGGAAATAGCAATCTGTGCTGAAAGATTTAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR GCA 90 bp | ACAGTTCTTATTTTCAATCCCCCAGCAAGTAATTGTGACACCTTGTCTTTCAAAAGTTTTGCGCATCCATaGGTAGGGGCTGTGACGGCT | + |
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Preference number: 4 (lower is better) Translates to: TVLIFNPPASNCDTLSFKSFAHP*VGAVTA Trigger: AGCCGTCACAGCCCCTACGCATGGATGCGCAAAACT...TTTGAAAGACAAGGTGTCACAATTACTTGCTGGGGGATTGAAAATAAGAACTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR GCA 90 bp | ATATTAGAGTCTTCTGAAATATCTCCAACTCATCGTGTGTCTACTTGTTTGGAATCACCTGCACAGTTTTaGGCATCCATGCGTAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: ILESSEISPTHRVSTCLESPAQF*ASMRRG Trigger: GCCCCTACGCATGGATGCGCAAAACTGTGCAGGTGA...TTCCAAACAAGTAGACACACGATGAGTTGGAGATATTTCAGAAGACTCTAATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR TCA 90 bp | ACAGTTCTTATTTTCAATCCCCCAGCAAGTAATTGTGACACCTTGTCTTTCAAAGTTAACTGCCAGCTCTaGCTTCCTCCTGATGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: TVLIFNPPASNCDTLSFKVNCQL*LPPDGD Trigger: ATCACCATCAGGAGGAAGTCAGAGCTGGCAGTTAAC...TTTGAAAGACAAGGTGTCACAATTACTTGCTGGGGGATTGAAAATAAGAACTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR CCA 90 bp | AACTCATCGTGTGTCTACTTGTTTGGAATTGTGTCTTGTAAGGAATTATATCCATCCACGGACAGCAGATaGAGTGGTGAAGAAAGCGTT | + |
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Preference number: 4 (lower is better) Translates to: NSSCVYLFGIVSCKELYPSTDSR*SGEESV Trigger: AACGCTTTCTTCACCACTCCATCTGCTGTCCGTGGA...TGGATATAATTCCTTACAAGACACAATTCCAAACAAGTAGACACACGATGAGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR CCA 90 bp | ATATTAGAGTCTTCTGAAATATCTCCAACTCATCGTGTGTCTACTTGTTTGGAAGTAGTGTGGGTAAACTaGGGCTGCAGTAAAGTTGGA | + |
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Preference number: 4 (lower is better) Translates to: ILESSEISPTHRVSTCLEVVWVN*GCSKVG Trigger: TCCAACTTTACTGCAGCCCCAGTTTACCCACACTAC...TTCCAAACAAGTAGACACACGATGAGTTGGAGATATTTCAGAAGACTCTAATAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| 3UTR CAA 72 bp | ATATCTCCAACTCATCGTGTGTCTACTTGTTTGGAATaGTGTCTTGTAAGGAATTATATCCAATCTCAACTG | + |
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Preference number: 4 (lower is better) Translates to: ISPTHRVSTCLE*CLVRNYIQSQL Trigger: CAGTTGAGATTGGATATAATTCCTTACAAGACACAATTCCAAACAAGTAGACACACGATGAGTTGGAGATAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| 3UTR CAA 72 bp | TCTGAAATATCTCCAACTCATCGTGTGTCTACTTGTTaGGAATTGTGTCTTGTAAGGAATTATATCCAATCT | + |
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Preference number: 4 (lower is better) Translates to: SEISPTHRVSTC*ELCLVRNYIQS Trigger: AGATTGGATATAATTCCTTACAAGACACAATTCCAAACAAGTAGACACACGATGAGTTGGAGATATTTCAGA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS GCA 90 bp | CGTAGGGGCTGTGACGGCTCCTGCTGGGAGAAGTGGCGCCTGAGGTaGCGGAGTCAAGAGAAACCAGTGACTCGCTGGCCGCGTCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: RRGCDGSCWEKWRLR*RSQEKPVTRWPRLA Trigger: TGCCAGACGCGGCCAGCGAGTCACTGGTTTCTCTTGACTCCGGCACCTCAGGCGCCACTTCTCCCAGCAGGAGCCGTCACAGCCCCTACG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS TCA 90 bp | CGGCCCAGGGTATGTACTCCAGTCTTCCCGGGGCGGACTGTAGGGTaGGCTCCAGGCTCCCAGCGAAGGCCCGTGAGGATCCATGTTGGA | + |
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Preference number: 5 (lower is better) Translates to: RPRVCTPVFPGRTVG*APGSQRRPVRIHVG Trigger: TCCAACATGGATCCTCACGGGCCTTCGCTGGGAGCCTGGAGCTCACCCTACAGTCCGCCCCGGGAAGACTGGAGTACATACCCTGGGCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS CCA 90 bp | TGCGCATCCATGCGTAGGGGCTGTGACGGCTCCTGCTGGGAGAAGTaGCGCCTGAGGTGCCGGAGTCAAGAGAAACCAGTGACTCGCTGG | + |
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Preference number: 5 (lower is better) Translates to: CASMRRGCDGSCWEK*RLRCRSQEKPVTRW Trigger: CCAGCGAGTCACTGGTTTCTCTTGACTCCGGCACCTCAGGCGCCACTTCTCCCAGCAGGAGCCGTCACAGCCCCTACGCATGGATGCGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR CAA 90 bp | GCCCCAGGCCACCCTGCTCACTGCAGCACCTTTGCTTACCCAGACCTATGTGTTTGGGCACTGTGCCCATaGTACTGGGCGGCCCAGGGT | + |
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Preference number: 5 (lower is better) Translates to: APGHPAHCSTFAYPDLCVWALCP*YWAAQG Trigger: ACCCTGGGCCGCCCAGTACAATGGGCACAGTGCCCA...AACACATAGGTCTGGGTAAGCAAAGGTGCTGCAGTGAGCAGGGTGGCCTGGGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS GCA 90 bp | CCTGCACAGTTTTGCGCATCCATGCGTAGGGGCTGTGACGGCTCCTaGTGGGAGAAGTGGCGCCTGAGGTGCCGGAGTCAAGAGAAACCA | + |
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Preference number: 5 (lower is better) Translates to: PAQFCASMRRGCDGS*WEKWRLRCRSQEKP Trigger: TGGTTTCTCTTGACTCCGGCACCTCAGGCGCCACTTCTCCCAGCAGGAGCCGTCACAGCCCCTACGCATGGATGCGCAAAACTGTGCAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS CCA 90 bp | GCACAGTTTTGCGCATCCATGCGTAGGGGCTGTGACGGCTCCTGCTaGGAGAAGTGGCGCCTGAGGTGCCGGAGTCAAGAGAAACCAGTG | + |
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Preference number: 5 (lower is better) Translates to: AQFCASMRRGCDGSC*EKWRLRCRSQEKPV Trigger: CACTGGTTTCTCTTGACTCCGGCACCTCAGGCGCCACTTCTCCCAGCAGGAGCCGTCACAGCCCCTACGCATGGATGCGCAAAACTGTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS CCA 90 bp | AGGGTGAGCTCCAGGCTCCCAGCGAAGGCCCGTGAGGATCCATGTTaGACATATGAGGGTAACCCACGTAGTGTGGGTAAACTGGGGCTG | + |
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Preference number: 5 (lower is better) Translates to: RVSSRLPAKAREDPC*TYEGNPRSVGKLGL Trigger: CAGCCCCAGTTTACCCACACTACGTGGGTTACCCTCATATGTCCAACATGGATCCTCACGGGCCTTCGCTGGGAGCCTGGAGCTCACCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS GCA 90 bp | GTTGGACATATGAGGGTAACCCACGTAGTGTGGGTAAACTGGGGCTaGAGTAAAGTTGGAGGCAGGCAGAGGACTACCACTGCCCCCAGA | + |
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Preference number: 5 (lower is better) Translates to: VGHMRVTHVVWVNWG*SKVGGRQRTTTAPR Trigger: TCTGGGGGCAGTGGTAGTCCTCTGCCTGCCTCCAACTTTACTGCAGCCCCAGTTTACCCACACTACGTGGGTTACCCTCATATGTCCAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS CCA 90 bp | TATGACCTGCTGTATCTCGATTGGCTGAAATCCACGGACAGCAGATaGAGTGGTGAAGAAAGCGTTAGGCAGTTCTCCGGGGCTGATGGA | + |
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Preference number: 5 (lower is better) Translates to: YDLLYLDWLKSTDSR*SGEESVRQFSGADG Trigger: TCCATCAGCCCCGGAGAACTGCCTAACGCTTTCTTCACCACTCCATCTGCTGTCCGTGGATTTCAGCCAATCGAGATACAGCAGGTCATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR CAA 90 bp | ACAGTTCTTATTTTCAATCCCCCAGCAAGTAATTGTGACACCTTGTCTTTCAAAGGGGCTGCAGTAAAGTaGGAGGCAGGCAGAGGACTA | + |
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Preference number: 5 (lower is better) Translates to: TVLIFNPPASNCDTLSFKGAAVK*EAGRGL Trigger: TAGTCCTCTGCCTGCCTCCAACTTTACTGCAGCCCC...TTTGAAAGACAAGGTGTCACAATTACTTGCTGGGGGATTGAAAATAAGAACTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR CAA 90 bp | ACAGTTCTTATTTTCAATCCCCCAGCAAGTAATTGTGACACCTTGTCTTTCAAAGGAGCCAGAGTCACTTaGCACGGAACCTCCAGTGTT | + |
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Preference number: 5 (lower is better) Translates to: TVLIFNPPASNCDTLSFKGARVT*HGTSSV Trigger: AACACTGGAGGTTCCGTGCAAAGTGACTCTGGCTCC...TTTGAAAGACAAGGTGTCACAATTACTTGCTGGGGGATTGAAAATAAGAACTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS-3UTR CAA 90 bp | ATATTAGAGTCTTCTGAAATATCTCCAACTCATCGTGTGTCTACTTGTTTGGAACCTGCTGTATCTCGATaGGCTGAAATCCACGGACAG | + |
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Preference number: 5 (lower is better) Translates to: ILESSEISPTHRVSTCLEPAVSR*AEIHGQ Trigger: CTGTCCGTGGATTTCAGCCAATCGAGATACAGCAGG...TTCCAAACAAGTAGACACACGATGAGTTGGAGATATTTCAGAAGACTCTAATAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS CCA 72 bp | CCGCGTCTGGCAAGCTACCGCCGTTGCTTGCACCGCTaGTGGGGCCCAGAGTGCTGTAGTCTGGGGATCCGA | + |
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Preference number: 6 (lower is better) Translates to: PRLASYRRCLHR*WGPECCSLGIR Trigger: TCGGATCCCCAGACTACAGCACTCTGGGCCCCACCAGCGGTGCAAGCAACGGCGGTAGCTTGCCAGACGCGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS CCA 72 bp | TGCGCATCCATGCGTAGGGGCTGTGACGGCTCCTGCTaGGAGAAGTGGCGCCTGAGGTGCCGGAGTCAAGAG | + |
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Preference number: 6 (lower is better) Translates to: CASMRRGCDGSC*EKWRLRCRSQE Trigger: CTCTTGACTCCGGCACCTCAGGCGCCACTTCTCCCAGCAGGAGCCGTCACAGCCCCTACGCATGGATGCGCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS TCA 72 bp | GTATGTACTCCAGTCTTCCCGGGGCGGACTGTAGGGTaGGCTCCAGGCTCCCAGCGAAGGCCCGTGAGGATC | + |
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Preference number: 6 (lower is better) Translates to: VCTPVFPGRTVG*APGSQRRPVRI Trigger: GATCCTCACGGGCCTTCGCTGGGAGCCTGGAGCTCACCCTACAGTCCGCCCCGGGAAGACTGGAGTACATAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS GCA 72 bp | TGTGACGGCTCCTGCTGGGAGAAGTGGCGCCTGAGGTaGCGGAGTCAAGAGAAACCAGTGACTCGCTGGCCG | + |
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Preference number: 6 (lower is better) Translates to: CDGSCWEKWRLR*RSQEKPVTRWP Trigger: CGGCCAGCGAGTCACTGGTTTCTCTTGACTCCGGCACCTCAGGCGCCACTTCTCCCAGCAGGAGCCGTCACA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS CCA 72 bp | CGTCTGGCAAGCTACCGCCGTTGCTTGCACCGCTGGTaGGGCCCAGAGTGCTGTAGTCTGGGGATCCGAAAA | + |
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Preference number: 6 (lower is better) Translates to: RLASYRRCLHRW*GPECCSLGIRK Trigger: TTTTCGGATCCCCAGACTACAGCACTCTGGGCCCCACCAGCGGTGCAAGCAACGGCGGTAGCTTGCCAGACG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS CCA 72 bp | ATGCGTAGGGGCTGTGACGGCTCCTGCTGGGAGAAGTaGCGCCTGAGGTGCCGGAGTCAAGAGAAACCAGTG | + |
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Preference number: 6 (lower is better) Translates to: MRRGCDGSCWEK*RLRCRSQEKPV Trigger: CACTGGTTTCTCTTGACTCCGGCACCTCAGGCGCCACTTCTCCCAGCAGGAGCCGTCACAGCCCCTACGCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS CCA 72 bp | AGGTCATGTCATTCATGGGCACTGTGCCCATTGTACTaGGCGGCCCAGGGTATGTACTCCAGTCTTCCCGGG | + |
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Preference number: 6 (lower is better) Translates to: RSCHSWALCPLY*AAQGMYSSLPG Trigger: CCCGGGAAGACTGGAGTACATACCCTGGGCCGCCCAGTACAATGGGCACAGTGCCCATGAATGACATGACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS GCA 72 bp | CGAAAACTGGGGAGGTCATGTCATTCATGGGCACTGTaGCCATTGTACTGGGCGGCCCAGGGTATGTACTCC | + |
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Preference number: 6 (lower is better) Translates to: RKLGRSCHSWAL*PLYWAAQGMYS Trigger: GGAGTACATACCCTGGGCCGCCCAGTACAATGGGCACAGTGCCCATGAATGACATGACCTCCCCAGTTTTCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS CCA 72 bp | TCCAGGCTCCCAGCGAAGGCCCGTGAGGATCCATGTTaGACATATGAGGGTAACCCACGTAGTGTGGGTAAA | + |
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Preference number: 6 (lower is better) Translates to: SRLPAKAREDPC*TYEGNPRSVGK Trigger: TTTACCCACACTACGTGGGTTACCCTCATATGTCCAACATGGATCCTCACGGGCCTTCGCTGGGAGCCTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS GCA 72 bp | ATGAGGGTAACCCACGTAGTGTGGGTAAACTGGGGCTaGAGTAAAGTTGGAGGCAGGCAGAGGACTACCACT | + |
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Preference number: 6 (lower is better) Translates to: MRVTHVVWVNWG*SKVGGRQRTTT Trigger: AGTGGTAGTCCTCTGCCTGCCTCCAACTTTACTGCAGCCCCAGTTTACCCACACTACGTGGGTTACCCTCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS CCA 72 bp | GGACATATGAGGGTAACCCACGTAGTGTGGGTAAACTaGGGCTGCAGTAAAGTTGGAGGCAGGCAGAGGACT | + |
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Preference number: 6 (lower is better) Translates to: GHMRVTHVVWVN*GCSKVGGRQRT Trigger: AGTCCTCTGCCTGCCTCCAACTTTACTGCAGCCCCAGTTTACCCACACTACGTGGGTTACCCTCATATGTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS CCA 72 bp | CTGTATCTCGATTGGCTGAAATCCACGGACAGCAGATaGAGTGGTGAAGAAAGCGTTAGGCAGTTCTCCGGG | + |
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Preference number: 6 (lower is better) Translates to: LYLDWLKSTDSR*SGEESVRQFSG Trigger: CCCGGAGAACTGCCTAACGCTTTCTTCACCACTCCATCTGCTGTCCGTGGATTTCAGCCAATCGAGATACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS CCA 72 bp | ATCCATGTTGGACATATGAGGGTAACCCACGTAGTGTaGGTAAACTGGGGCTGCAGTAAAGTTGGAGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: IHVGHMRVTHVV*VNWGCSKVGGR Trigger: CCTGCCTCCAACTTTACTGCAGCCCCAGTTTACCCACACTACGTGGGTTACCCTCATATGTCCAACATGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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| CDS TCA 72 bp | CATTCAGAAACTATGACCTGCTGTATCTCGATTGGCTaGAATCCACGGACAGCAGATGGAGTGGTGAAGAAA | + |
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Preference number: 6 (lower is better) Translates to: HSETMTCCISIG*NPRTADGVVKK Trigger: TTTCTTCACCACTCCATCTGCTGTCCGTGGATTTCAGCCAATCGAGATACAGCAGGTCATAGTTTCTGAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033689.3 |
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