Pregenerated sensors for CDX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029646Ensembl transcript IDs: ENSMUST00000031650.4
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCAGCTATCTTAGCTGCCTCTGGCTCCTGTAGTTTGAATAGTCCCTaGCCCGGAGGCAGGACGGCCAGCTGGTTCTCAGAAAGCAGTCAG | + |
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Preference number: 1 (lower is better) Translates to: PAILAASGSCSLNSP*PGGRTASWFSESSQ Trigger: CTGACTGCTTTCTGAGAACCAGCTGGCCGTCCTGCCTCCGGGCCAGGGACTATTCAAACTACAGGAGCCAGAGGCAGCTAAGATAGCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR CCA 90 bp | TCCTGTAGTTTGAATAGTCCCTGGCCCGGAGGCAGGACGGCCAGCTaGTTCTCAGAAAGCAGTCAGCAGGAAACAGCCACCTTGGCTCAA | + |
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Preference number: 1 (lower is better) Translates to: SCSLNSPWPGGRTAS*FSESSQQETATLAQ Trigger: TTGAGCCAAGGTGGCTGTTTCCTGCTGACTGCTTTCTGAGAACCAGCTGGCCGTCCTGCCTCCGGGCCAGGGACTATTCAAACTACAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR CCA 90 bp | GGTCTTCTTCAGCCAAAGACGAGGGAAGGGACAGGAAGTCCAGGTTaGCTCTGGCATTTACAACACAGACATACATTCCGCCTACAGCAG | + |
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Preference number: 1 (lower is better) Translates to: GLLQPKTREGTGSPG*LWHLQHRHTFRLQQ Trigger: CTGCTGTAGGCGGAATGTATGTCTGTGTTGTAAATGCCAGAGCCAACCTGGACTTCCTGTCCCTTCCCTCGTCTTTGGCTGAAGAAGACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR CAA 90 bp | ACTTCGGTCAGTCCAGCTATCTTAGCTGCCTCTGGCTCCTGTAGTTaGAATAGTCCCTGGCCCGGAGGCAGGACGGCCAGCTGGTTCTCA | + |
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Preference number: 2 (lower is better) Translates to: TSVSPAILAASGSCS*NSPWPGGRTASWFS Trigger: TGAGAACCAGCTGGCCGTCCTGCCTCCGGGCCAGGGACTATTCAAACTACAGGAGCCAGAGGCAGCTAAGATAGCTGGACTGACCGAAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR CAA 90 bp | ACGGCCAGCTGGTTCTCAGAAAGCAGTCAGCAGGAAACAGCCACCTaGGCTCAAGTATTGCTACCCCCACCCCATCCAGTCTCACTCTCT | + |
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Preference number: 2 (lower is better) Translates to: TASWFSESSQQETAT*AQVLLPPPHPVSLS Trigger: AGAGAGTGAGACTGGATGGGGTGGGGGTAGCAATACTTGAGCCAAGGTGGCTGTTTCCTGCTGACTGCTTTCTGAGAACCAGCTGGCCGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR-3UTR CCA 90 bp | TGGAGAAGAAAGCCCAGACCACCTGGTGGGGGAGGTTCTGCAGACTTCGGTCAGAGGAAACAGCCACCTTaGCTCAAGTATTGCTACCCC | + |
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Preference number: 2 (lower is better) Translates to: WRRKPRPPGGGGSADFGQRKQPP*LKYCYP Trigger: GGGGTAGCAATACTTGAGCCAAGGTGGCTGTTTCCT...CTGACCGAAGTCTGCAGAACCTCCCCCACCAGGTGGTCTGGGCTTTCTTCTCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR CAA 90 bp | TTCTCAGAAAGCAGTCAGCAGGAAACAGCCACCTTGGCTCAAGTATaGCTACCCCCACCCCATCCAGTCTCACTCTCTCCTCAGCTCCAC | + |
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Preference number: 2 (lower is better) Translates to: FSESSQQETATLAQV*LPPPHPVSLSPQLH Trigger: GTGGAGCTGAGGAGAGAGTGAGACTGGATGGGGTGGGGGTAGCAATACTTGAGCCAAGGTGGCTGTTTCCTGCTGACTGCTTTCTGAGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR CAA 90 bp | CGGTCTTCTTCAGCCAAAGACGAGGGAAGGGACAGGAAGTCCAGGTaGGCTCTGGCATTTACAACACAGACATACATTCCGCCTACAGCA | + |
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Preference number: 2 (lower is better) Translates to: RSSSAKDEGRDRKSR*ALAFTTQTYIPPTA Trigger: TGCTGTAGGCGGAATGTATGTCTGTGTTGTAAATGCCAGAGCCAACCTGGACTTCCTGTCCCTTCCCTCGTCTTTGGCTGAAGAAGACCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR-3UTR CCA 90 bp | GAAGGCTTTTTAAAAGGCTTGTTTGGCTCGTTACACAGATCAGTGACTCGAACACCTCATGGCTCAGCCTaGGATTGCTGTGCCGCCGCC | + |
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Preference number: 2 (lower is better) Translates to: EGFLKGLFGSLHRSVTRTPHGSA*DCCAAA Trigger: GGCGGCGGCACAGCAATCCCAGGCTGAGCCATGAGG...TGTTCGAGTCACTGATCTGTGTAACGAGCCAAACAAGCCTTTTAAAAAGCCTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR-3UTR CCA 90 bp | ACAACACAGACATACATTCCGCCTACAGCAGCTCTGGTGACAGGCTTTCTAAACCGTCCATACTCCTCATaGCTCAGCCTGGGATTGCTG | + |
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Preference number: 2 (lower is better) Translates to: TTQTYIPPTAALVTGFLNRPYSS*LSLGLL Trigger: CAGCAATCCCAGGCTGAGCCATGAGGAGTATGGACG...GTTTAGAAAGCCTGTCACCAGAGCTGCTGTAGGCGGAATGTATGTCTGTGTTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR-3UTR CCA 90 bp | TTTTTAAAAGGCTTGTTTGGCTCGTTACACAGATCAGTGACTCGAACAGCAGCACCCCTTCCTGATTTGTaGAGAAGAAAGCCCAGACCA | + |
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Preference number: 2 (lower is better) Translates to: FLKGLFGSLHRSVTRTAAPLPDL*RRKPRP Trigger: TGGTCTGGGCTTTCTTCTCCACAAATCAGGAAGGGG...TGCTGCTGTTCGAGTCACTGATCTGTGTAACGAGCCAAACAAGCCTTTTAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR CCA 72 bp | GATTCTCGCAGCGTCCATACTCCTCATGGCTCAGCCTaGGATTGCTGTGCCGCCGCCGCTTCAGACCACGGG | + |
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Preference number: 3 (lower is better) Translates to: DSRSVHTPHGSA*DCCAAAASDHG Trigger: CCCGTGGTCTGAAGCGGCGGCGGCACAGCAATCCCAGGCTGAGCCATGAGGAGTATGGACGCTGCGAGAATC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR CCA 72 bp | TTGAATAGTCCCTGGCCCGGAGGCAGGACGGCCAGCTaGTTCTCAGAAAGCAGTCAGCAGGAAACAGCCACC | + |
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Preference number: 3 (lower is better) Translates to: LNSPWPGGRTAS*FSESSQQETAT Trigger: GGTGGCTGTTTCCTGCTGACTGCTTTCTGAGAACCAGCTGGCCGTCCTGCCTCCGGGCCAGGGACTATTCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR CCA 72 bp | TTAGCTGCCTCTGGCTCCTGTAGTTTGAATAGTCCCTaGCCCGGAGGCAGGACGGCCAGCTGGTTCTCAGAA | + |
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Preference number: 3 (lower is better) Translates to: LAASGSCSLNSP*PGGRTASWFSE Trigger: TTCTGAGAACCAGCTGGCCGTCCTGCCTCCGGGCCAGGGACTATTCAAACTACAGGAGCCAGAGGCAGCTAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR GCA 72 bp | GCAGTCAGCAGGAAACAGCCACCTTGGCTCAAGTATTaGTACCCCCACCCCATCCAGTCTCACTCTCTCCTC | + |
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Preference number: 3 (lower is better) Translates to: AVSRKQPPWLKY*YPHPIQSHSLL Trigger: GAGGAGAGAGTGAGACTGGATGGGGTGGGGGTAGCAATACTTGAGCCAAGGTGGCTGTTTCCTGCTGACTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR CCA 72 bp | CAGCCAAAGACGAGGGAAGGGACAGGAAGTCCAGGTTaGCTCTGGCATTTACAACACAGACATACATTCCGC | + |
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Preference number: 3 (lower is better) Translates to: QPKTREGTGSPG*LWHLQHRHTFR Trigger: GCGGAATGTATGTCTGTGTTGTAAATGCCAGAGCCAACCTGGACTTCCTGTCCCTTCCCTCGTCTTTGGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR GCA 72 bp | GAACGAAGAAGCCCCAGGAATCACTTCGTTTGTCGTTaGTGGCAGGAAGAGTCGGAATGGGAAAAGTTAAAA | + |
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Preference number: 3 (lower is better) Translates to: ERRSPRNHFVCR*WQEESEWEKLK Trigger: TTTTAACTTTTCCCATTCCGACTCTTCCTGCCAGCAACGACAAACGAAGTGATTCCTGGGGCTTCTTCGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR-3UTR CAA 90 bp | AGAAGGCTTTTTAAAAGGCTTGTTTGGCTCGTTACACAGATCAGTGACTCGAACGACAGGAAGTCCAGGTaGGCTCTGGCATTTACAACA | + |
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Preference number: 3 (lower is better) Translates to: RRLFKRLVWLVTQISDSNDRKSR*ALAFTT Trigger: TGTTGTAAATGCCAGAGCCAACCTGGACTTCCTGTC...GTTCGAGTCACTGATCTGTGTAACGAGCCAAACAAGCCTTTTAAAAAGCCTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR TCA 90 bp | TCTCGCAGCGTCCATACTCCTCATGGCTCAGCCTGGGATTGCTGTGCCGCCGCCCGCAGGGCACCCGGCTaGGGCTGGGAAGGTTGTGGC | + |
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Preference number: 4 (lower is better) Translates to: SRSVHTPHGSAWDCCAAARRAPG*GWEGCG Trigger: GCCACAACCTTCCCAGCCTCAGCCGGGTGCCCTGCG...GGCGGCGGCACAGCAATCCCAGGCTGAGCCATGAGGAGTATGGACGCTGCGAGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR CCA 90 bp | GCGTCCATACTCCTCATGGCTCAGCCTGGGATTGCTGTGCCGCCGCCGCTTCAGTTCGCCGCTGGCCGCTaGGGGACAGCTGTTCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: ASILLMAQPGIAVPPPLQFAAGR*GTAVRR Trigger: CCGCCGAACAGCTGTCCCCCAGCGGCCAGCGGCGAA...CTGAAGCGGCGGCGGCACAGCAATCCCAGGCTGAGCCATGAGGAGTATGGACGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR CAA 72 bp | TCGCAGCGTCCATACTCCTCATGGCTCAGCCTGGGATaGCTGTGCCGCCGCCGCTTCAGACCACGGGAGGGG | + |
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Preference number: 4 (lower is better) Translates to: SQRPYSSWLSLG*LCRRRFRPREG Trigger: CCCCTCCCGTGGTCTGAAGCGGCGGCGGCACAGCAATCCCAGGCTGAGCCATGAGGAGTATGGACGCTGCGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR TCA 90 bp | GCGTCCATACTCCTCATGGCTCAGCCTGGGATTGCTGTGCCGCCGCCGCTTCAGGATGGCCCTGGGGACTaGGCGCTGTCCAAGTTCGCC | + |
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Preference number: 4 (lower is better) Translates to: ASILLMAQPGIAVPPPLQDGPGD*ALSKFA Trigger: GGCGAACTTGGACAGCGCTCAGTCCCCAGGGCCATC...CTGAAGCGGCGGCGGCACAGCAATCCCAGGCTGAGCCATGAGGAGTATGGACGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR GCA 90 bp | GCGTCCATACTCCTCATGGCTCAGCCTGGGATTGCTGTGCCGCCGCCGCTTCAGTGGCTTCCTAGGGACTaGTGCGCGGGCTTCCGCATC | + |
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Preference number: 4 (lower is better) Translates to: ASILLMAQPGIAVPPPLQWLPRD*CAGFRI Trigger: GATGCGGAAGCCCGCGCAGCAGTCCCTAGGAAGCCA...CTGAAGCGGCGGCGGCACAGCAATCCCAGGCTGAGCCATGAGGAGTATGGACGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR GCA 90 bp | GGACGGCCAGCTGGTTCTCAGAAAGCAGTCAGCAGGAAACAGCCACCTTGGCTCCTTCCTAGGGACTGCTaGGCGGGCTTCCGCATCCAC | + |
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Preference number: 4 (lower is better) Translates to: GRPAGSQKAVSRKQPPWLLPRDC*AGFRIH Trigger: GTGGATGCGGAAGCCCGCGCAGCAGTCCCTAGGAAG...GAGCCAAGGTGGCTGTTTCCTGCTGACTGCTTTCTGAGAACCAGCTGGCCGTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR CCA 90 bp | TGGAGAAGAAAGCCCAGACCACCTGGTGGGGGAGGTTCTGCAGACTTCGGTCAGTTCAGGCCGCCGGAGTaGCGCACGGAGCTAGGATAC | + |
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Preference number: 4 (lower is better) Translates to: WRRKPRPPGGGGSADFGQFRPPE*RTELGY Trigger: GTATCCTAGCTCCGTGCGCCACTCCGGCGGCCTGAA...CTGACCGAAGTCTGCAGAACCTCCCCCACCAGGTGGTCTGGGCTTTCTTCTCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR CCA 90 bp | GGACGGCCAGCTGGTTCTCAGAAAGCAGTCAGCAGGAAACAGCCACCTTGGCTCTTGTGGCGGCGGCTGTaGAGGCTGTTGTTGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: GRPAGSQKAVSRKQPPWLLWRRL*RLLLLL Trigger: CAGCAGCAACAACAGCCTCCACAGCCGCCGCCACAA...GAGCCAAGGTGGCTGTTTCCTGCTGACTGCTTTCTGAGAACCAGCTGGCCGTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR CAA 72 bp | AGTCCAGCTATCTTAGCTGCCTCTGGCTCCTGTAGTTaGAATAGTCCCTGGCCCGGAGGCAGGACGGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: SPAILAASGSCS*NSPWPGGRTAS Trigger: GCTGGCCGTCCTGCCTCCGGGCCAGGGACTATTCAAACTACAGGAGCCAGAGGCAGCTAAGATAGCTGGACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR GCA 90 bp | GAGAAGAAAGCCCAGACCACCTGGTGGGGGAGGTTCTGCAGACTTCGGTCAGTCGGACTGACAAAGTTCTaGGGAGCCAGGTTCAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: EKKAQTTWWGRFCRLRSVGLTKF*GARFRP Trigger: CGGCCTGAACCTGGCTCCGCAGAACTTTGTCAGTCC...GACTGACCGAAGTCTGCAGAACCTCCCCCACCAGGTGGTCTGGGCTTTCTTCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR GCA 90 bp | AAAGCCCAGACCACCTGGTGGGGGAGGTTCTGCAGACTTCGGTCAGTCCAGCTACCAGGCACTGAGCCTTaGAAGGAGGTCACAGGACTC | + |
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Preference number: 4 (lower is better) Translates to: KAQTTWWGRFCRLRSVQLPGTEP*KEVTGL Trigger: GAGTCCTGTGACCTCCTTGCAAGGCTCAGTGCCTGG...TAGCTGGACTGACCGAAGTCTGCAGAACCTCCCCCACCAGGTGGTCTGGGCTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR CCA 90 bp | AGATGCTGTTCGTGGGTAGGAGGAGAGGAATCTCTTCTGAGGATTCTCGCAGCGGGGCCAGGATGGCCCTaGGGACTGAGCGCTGTCCAA | + |
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Preference number: 4 (lower is better) Translates to: RCCSWVGGEESLLRILAAGPGWP*GLSAVQ Trigger: TTGGACAGCGCTCAGTCCCCAGGGCCATCCTGGCCC...CGCTGCGAGAATCCTCAGAAGAGATTCCTCTCCTCCTACCCACGAACAGCATCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR CCA 90 bp | AAAGCCCAGACCACCTGGTGGGGGAGGTTCTGCAGACTTCGGTCAGTCCAGCTACGGAGAGCCCAAGTGTaGCAGCCAGCTCACTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: KAQTTWWGRFCRLRSVQLRRAQV*QPAHFS Trigger: GGAAAAGTGAGCTGGCTGCCACACTTGGGCTCTCCG...TAGCTGGACTGACCGAAGTCTGCAGAACCTCCCCCACCAGGTGGTCTGGGCTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR CAA 72 bp | AGCAGTCAGCAGGAAACAGCCACCTTGGCTCAAGTATaGCTACCCCCACCCCATCCAGTCTCACTCTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: SSQQETATLAQV*LPPPHPVSLSP Trigger: AGGAGAGAGTGAGACTGGATGGGGTGGGGGTAGCAATACTTGAGCCAAGGTGGCTGTTTCCTGCTGACTGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR TCA 90 bp | CCAGCTGGTTCTCAGAAAGCAGTCAGCAGGAAACAGCCACCTTGGCTCAAGTATGACAGAACCAGGCACTaGGCCTTGCAAGGAGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: PAGSQKAVSRKQPPWLKYDRTRH*ALQGGH Trigger: GTGACCTCCTTGCAAGGCTCAGTGCCTGGTTCTGTC...ATACTTGAGCCAAGGTGGCTGTTTCCTGCTGACTGCTTTCTGAGAACCAGCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR CAA 72 bp | TGGTTCTCAGAAAGCAGTCAGCAGGAAACAGCCACCTaGGCTCAAGTATTGCTACCCCCACCCCATCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: WFSESSQQETAT*AQVLLPPPHPV Trigger: GACTGGATGGGGTGGGGGTAGCAATACTTGAGCCAAGGTGGCTGTTTCCTGCTGACTGCTTTCTGAGAACCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR GCA 90 bp | TTTTTAAAAGGCTTGTTTGGCTCGTTACACAGATCAGTGACTCGAACAGCAGCACGCAGCGCCCCCGGGTaGGTAGCCATTCCAGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: FLKGLFGSLHRSVTRTAARSAPG*VAIPVL Trigger: GAGGACTGGAATGGCTACGCACCCGGGGGCGCTGCG...TGCTGCTGTTCGAGTCACTGATCTGTGTAACGAGCCAAACAAGCCTTTTAAAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR CCA 90 bp | TTCTCTACCCATGGATCAAGAAGGCTTTTTAAAAGGCTTGTTTGGCTCGTTACACGCGGTGGGCCAGGATaGCCCTGGGGACTGAGCGCT | + |
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Preference number: 4 (lower is better) Translates to: FSTHGSRRLFKRLVWLVTRGGPG*PWGLSA Trigger: AGCGCTCAGTCCCCAGGGCCATCCTGGCCCACCGCG...TGTAACGAGCCAAACAAGCCTTTTAAAAAGCCTTCTTGATCCATGGGTAGAGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR CCA 90 bp | TTCTCTACCCATGGATCAAGAAGGCTTTTTAAAAGGCTTGTTTGGCTCGTTACAAGGCTGGGAAGGTTGTaGCGGCGGCTGTGGAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: FSTHGSRRLFKRLVWLVTRLGRL*RRLWRL Trigger: CAGCCTCCACAGCCGCCGCCACAACCTTCCCAGCCT...TGTAACGAGCCAAACAAGCCTTTTAAAAAGCCTTCTTGATCCATGGGTAGAGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| 3UTR CAA 72 bp | TCAGCCAAAGACGAGGGAAGGGACAGGAAGTCCAGGTaGGCTCTGGCATTTACAACACAGACATACATTCCG | + |
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Preference number: 4 (lower is better) Translates to: SAKDEGRDRKSR*ALAFTTQTYIP Trigger: CGGAATGTATGTCTGTGTTGTAAATGCCAGAGCCAACCTGGACTTCCTGTCCCTTCCCTCGTCTTTGGCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR TCA 90 bp | TCTACCCATGGATCAAGAAGGCTTTTTAAAAGGCTTGTTTGGCTCGTTACACAGGGTACTGCGGAGGACTaGCAAAGTTCTGCGGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: STHGSRRLFKRLVWLVTQGTAED*QSSAEP Trigger: TGGCTCCGCAGAACTTTGTCAGTCCTCCGCAGTACC...CTGTGTAACGAGCCAAACAAGCCTTTTAAAAAGCCTTCTTGATCCATGGGTAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR GCA 90 bp | GAAGGCTTTTTAAAAGGCTTGTTTGGCTCGTTACACAGATCAGTGACTCGAACATGCTGTTGCTGCTGCTaGTTCTTCTTGATTTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: EGFLKGLFGSLHRSVTRTCCCCC*FFLIFL Trigger: GAGGAAAATCAAGAAGAAGCAGCAGCAGCAACAGCA...TGTTCGAGTCACTGATCTGTGTAACGAGCCAAACAAGCCTTTTAAAAAGCCTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR GCA 90 bp | GACTTCCCTTCACCATACAACTTCTCTACCCATGGATCAAGAAGGCTTTTTAAATGCTGCTGTTGCTGCTaGTGCTTCTTCTTGATTTTC | + |
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Preference number: 4 (lower is better) Translates to: DFPSPYNFSTHGSRRLFKCCCCC*CFFLIF Trigger: GAAAATCAAGAAGAAGCAGCAGCAGCAACAGCAGCA...TTTAAAAAGCCTTCTTGATCCATGGGTAGAGAAGTTGTATGGTGAAGGGAAGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR CCA 90 bp | TTCGTTTGTCGTTGCTGGCAGGAAGAGTCGGAATGGGAAAAGTTAAAAAGAAAAATTTGTCTTTTGTCCTaGTTTTCACTTGGCTTCCTA | + |
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Preference number: 4 (lower is better) Translates to: FVCRCWQEESEWEKLKRKICLLS*FSLGFL Trigger: TAGGAAGCCAAGTGAAAACCAGGACAAAAGACAAAT...TTTTCTTTTTAACTTTTCCCATTCCGACTCTTCCTGCCAGCAACGACAAACGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS TCA 90 bp | CGGAGAGGGGCGCCGTACGCGGTGGGCCAGGATGGCCCTGGGGACTaGGCGCTGTCCAAGTTCGCCGTAGCAGCCGCCGCGGCCGCCACG | + |
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Preference number: 5 (lower is better) Translates to: RRGAPYAVGQDGPGD*ALSKFAVAAAAAAT Trigger: CGTGGCGGCCGCGGCGGCTGCTACGGCGAACTTGGACAGCGCTCAGTCCCCAGGGCCATCCTGGCCCACCGCGTACGGCGCCCCTCTCCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS CCA 90 bp | GTCCTCGCGGAGAGGGGCGCCGTACGCGGTGGGCCAGGATGGCCCTaGGGACTGAGCGCTGTCCAAGTTCGCCGTAGCAGCCGCCGCGGC | + |
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Preference number: 5 (lower is better) Translates to: VLAERGAVRGGPGWP*GLSAVQVRRSSRRG Trigger: GCCGCGGCGGCTGCTACGGCGAACTTGGACAGCGCTCAGTCCCCAGGGCCATCCTGGCCCACCGCGTACGGCGCCCCTCTCCGCGAGGAC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS CCA 90 bp | GACTGCTGCGCGGGCTTCCGCATCCACTCGCACAGGTTTCGCCGCTaGCCGCTGGGGGACAGCTGTTCGGCGGCGGCGGTGGCTGCGGGC | + |
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Preference number: 5 (lower is better) Translates to: DCCAGFRIHSHRFRR*PLGDSCSAAAVAAG Trigger: GCCCGCAGCCACCGCCGCCGCCGAACAGCTGTCCCCCAGCGGCCAGCGGCGAAACCTGTGCGAGTGGATGCGGAAGCCCGCGCAGCAGTC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS GCA 90 bp | GGCGGCCGGGGAGCCACCATTGAGACCGTGGGCTACCGCGTTGGCTaGCGCAGCGCCCCCGGGTGCGTAGCCATTCCAGTCCTCGCGGAG | + |
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Preference number: 5 (lower is better) Translates to: GGRGATIETVGYRVG*RSAPGCVAIPVLAE Trigger: CTCCGCGAGGACTGGAATGGCTACGCACCCGGGGGCGCTGCGGCAGCCAACGCGGTAGCCCACGGTCTCAATGGTGGCTCCCCGGCCGCC 73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS GCA 90 bp | ATTGAGACCGTGGGCTACCGCGTTGGCTGCCGCAGCGCCCCCGGGTaGGTAGCCATTCCAGTCCTCGCGGAGAGGGGCGCCGTACGCGGT | + |
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Preference number: 5 (lower is better) Translates to: IETVGYRVGCRSAPG*VAIPVLAERGAVRG Trigger: ACCGCGTACGGCGCCCCTCTCCGCGAGGACTGGAATGGCTACGCACCCGGGGGCGCTGCGGCAGCCAACGCGGTAGCCCACGGTCTCAAT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS CCA 90 bp | ATTCCAGTCCTCGCGGAGAGGGGCGCCGTACGCGGTGGGCCAGGATaGCCCTGGGGACTGAGCGCTGTCCAAGTTCGCCGTAGCAGCCGC | + |
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Preference number: 5 (lower is better) Translates to: IPVLAERGAVRGGPG*PWGLSAVQVRRSSR Trigger: GCGGCTGCTACGGCGAACTTGGACAGCGCTCAGTCCCCAGGGCCATCCTGGCCCACCGCGTACGGCGCCCCTCTCCGCGAGGACTGGAAT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS CCA 90 bp | GTGCGTAGCCATTCCAGTCCTCGCGGAGAGGGGCGCCGTACGCGGTaGGCCAGGATGGCCCTGGGGACTGAGCGCTGTCCAAGTTCGCCG | + |
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Preference number: 5 (lower is better) Translates to: VRSHSSPRGEGRRTR*ARMALGTERCPSSP Trigger: CGGCGAACTTGGACAGCGCTCAGTCCCCAGGGCCATCCTGGCCCACCGCGTACGGCGCCCCTCTCCGCGAGGACTGGAATGGCTACGCAC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS TCA 90 bp | CGGCCGCCACGTGGTAACCACCGTAGTCCGGGTACTGCGGAGGACTaGCAAAGTTCTGCGGAGCCAGGTTCAGGCCGCCGGAGTGGCGCA | + |
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Preference number: 5 (lower is better) Translates to: RPPRGNHRSPGTAED*QSSAEPGSGRRSGA Trigger: TGCGCCACTCCGGCGGCCTGAACCTGGCTCCGCAGAACTTTGTCAGTCCTCCGCAGTACCCGGACTACGGTGGTTACCACGTGGCGGCCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR CAA 90 bp | GGCAGGACGGCCAGCTGGTTCTCAGAAAGCAGTCAGCAGGAAACAGCCACCTTGCTGAGGCTGGGAAGGTaGTGGCGGCGGCTGTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: GRTASWFSESSQQETATLLRLGR*WRRLWR Trigger: CCTCCACAGCCGCCGCCACAACCTTCCCAGCCTCAG...CAAGGTGGCTGTTTCCTGCTGACTGCTTTCTGAGAACCAGCTGGCCGTCCTGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS CCA 90 bp | GGAGGACTGACAAAGTTCTGCGGAGCCAGGTTCAGGCCGCCGGAGTaGCGCACGGAGCTAGGATACATGCTCACGTCCTTGTCCAGAAGG | + |
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Preference number: 5 (lower is better) Translates to: GGLTKFCGARFRPPE*RTELGYMLTSLSRR Trigger: CCTTCTGGACAAGGACGTGAGCATGTATCCTAGCTCCGTGCGCCACTCCGGCGGCCTGAACCTGGCTCCGCAGAACTTTGTCAGTCCTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR CAA 90 bp | GAAGGCTTTTTAAAAGGCTTGTTTGGCTCGTTACACAGATCAGTGACTCGAACAGCCGGGGAGCCACCATaGAGACCGTGGGCTACCGCG | + |
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Preference number: 5 (lower is better) Translates to: EGFLKGLFGSLHRSVTRTAGEPP*RPWATA Trigger: CGCGGTAGCCCACGGTCTCAATGGTGGCTCCCCGGC...TGTTCGAGTCACTGATCTGTGTAACGAGCCAAACAAGCCTTTTAAAAAGCCTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR CAA 90 bp | ACAACACAGACATACATTCCGCCTACAGCAGCTCTGGTGACAGGCTTTCTAAACTACACCACCCGGTATTaGTCTTTTGTCCTGGTTTTC | + |
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Preference number: 5 (lower is better) Translates to: TTQTYIPPTAALVTGFLNYTTRY*SFVLVF Trigger: GAAAACCAGGACAAAAGACAAATACCGGGTGGTGTA...GTTTAGAAAGCCTGTCACCAGAGCTGCTGTAGGCGGAATGTATGTCTGTGTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS-3UTR CAA 90 bp | TCAAGAAGGCTTTTTAAAAGGCTTGTTTGGCTCGTTACACAGATCAGTGACTCGTGCTGCTGCTTCTTCTaGATTTTCCTCTCCTTGGCT | + |
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Preference number: 5 (lower is better) Translates to: SRRLFKRLVWLVTQISDSCCCFF*IFLSLA Trigger: AGCCAAGGAGAGGAAAATCAAGAAGAAGCAGCAGCA...CGAGTCACTGATCTGTGTAACGAGCCAAACAAGCCTTTTAAAAAGCCTTCTTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS GCA 72 bp | GTGGGCTACCGCGTTGGCTGCCGCAGCGCCCCCGGGTaGGTAGCCATTCCAGTCCTCGCGGAGAGGGGCGCC | + |
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Preference number: 6 (lower is better) Translates to: VGYRVGCRSAPG*VAIPVLAERGA Trigger: GGCGCCCCTCTCCGCGAGGACTGGAATGGCTACGCACCCGGGGGCGCTGCGGCAGCCAACGCGGTAGCCCAC 75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS TCA 72 bp | GCGCCGTACGCGGTGGGCCAGGATGGCCCTGGGGACTaGGCGCTGTCCAAGTTCGCCGTAGCAGCCGCCGCG | + |
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Preference number: 6 (lower is better) Translates to: APYAVGQDGPGD*ALSKFAVAAAA Trigger: CGCGGCGGCTGCTACGGCGAACTTGGACAGCGCTCAGTCCCCAGGGCCATCCTGGCCCACCGCGTACGGCGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS CCA 72 bp | GCGGGCTTCCGCATCCACTCGCACAGGTTTCGCCGCTaGCCGCTGGGGGACAGCTGTTCGGCGGCGGCGGTG | + |
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Preference number: 6 (lower is better) Translates to: AGFRIHSHRFRR*PLGDSCSAAAV Trigger: CACCGCCGCCGCCGAACAGCTGTCCCCCAGCGGCCAGCGGCGAAACCTGTGCGAGTGGATGCGGAAGCCCGC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS CCA 72 bp | CTCGCGGAGAGGGGCGCCGTACGCGGTGGGCCAGGATaGCCCTGGGGACTGAGCGCTGTCCAAGTTCGCCGT | + |
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Preference number: 6 (lower is better) Translates to: LAERGAVRGGPG*PWGLSAVQVRR Trigger: ACGGCGAACTTGGACAGCGCTCAGTCCCCAGGGCCATCCTGGCCCACCGCGTACGGCGCCCCTCTCCGCGAG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS CCA 72 bp | GAGAGGGGCGCCGTACGCGGTGGGCCAGGATGGCCCTaGGGACTGAGCGCTGTCCAAGTTCGCCGTAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: ERGAVRGGPGWP*GLSAVQVRRSS Trigger: GCTGCTACGGCGAACTTGGACAGCGCTCAGTCCCCAGGGCCATCCTGGCCCACCGCGTACGGCGCCCCTCTC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS CCA 72 bp | CATTCCAGTCCTCGCGGAGAGGGGCGCCGTACGCGGTaGGCCAGGATGGCCCTGGGGACTGAGCGCTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: HSSPRGEGRRTR*ARMALGTERCP Trigger: TGGACAGCGCTCAGTCCCCAGGGCCATCCTGGCCCACCGCGTACGGCGCCCCTCTCCGCGAGGACTGGAATG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS GCA 72 bp | GGAGCCACCATTGAGACCGTGGGCTACCGCGTTGGCTaGCGCAGCGCCCCCGGGTGCGTAGCCATTCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: GATIETVGYRVG*RSAPGCVAIPV Trigger: GACTGGAATGGCTACGCACCCGGGGGCGCTGCGGCAGCCAACGCGGTAGCCCACGGTCTCAATGGTGGCTCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS TCA 72 bp | CGTGGTAACCACCGTAGTCCGGGTACTGCGGAGGACTaGCAAAGTTCTGCGGAGCCAGGTTCAGGCCGCCGG | + |
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Preference number: 6 (lower is better) Translates to: RGNHRSPGTAED*QSSAEPGSGRR Trigger: CCGGCGGCCTGAACCTGGCTCCGCAGAACTTTGTCAGTCCTCCGCAGTACCCGGACTACGGTGGTTACCACG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS GCA 72 bp | TTTGTCCTGGTTTTCACTTGGCTTCCTAGGGACTGCTaGGCGGGCTTCCGCATCCACTCGCACAGGTTTCGC | + |
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Preference number: 6 (lower is better) Translates to: FVLVFTWLPRDC*AGFRIHSHRFR Trigger: GCGAAACCTGTGCGAGTGGATGCGGAAGCCCGCGCAGCAGTCCCTAGGAAGCCAAGTGAAAACCAGGACAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS GCA 72 bp | TGTGGCGGCGGCTGTGGAGGCTGTTGTTGCTGCTGCTaGTGTTGCTGCTGCTGCTTCTTCTTGATTTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: CGGGCGGCCCCC*CCCCCFFLIFL Trigger: GAGGAAAATCAAGAAGAAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAGCCTCCACAGCCGCCGCCACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS GCA 72 bp | GAAGGTTGTGGCGGCGGCTGTGGAGGCTGTTGTTGCTaGTGCTGCTGTTGCTGCTGCTGCTTCTTCTTGATT | + |
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Preference number: 6 (lower is better) Translates to: EGCGGGCGGCCC*CCCCCCCFFLI Trigger: AATCAAGAAGAAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAGCCTCCACAGCCGCCGCCACAACCTTC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS GCA 72 bp | TCTTTTGTCCTGGTTTTCACTTGGCTTCCTAGGGACTaGTGCGCGGGCTTCCGCATCCACTCGCACAGGTTT | + |
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Preference number: 6 (lower is better) Translates to: SFVLVFTWLPRD*CAGFRIHSHRF Trigger: AAACCTGTGCGAGTGGATGCGGAAGCCCGCGCAGCAGTCCCTAGGAAGCCAAGTGAAAACCAGGACAAAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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| CDS GCA 72 bp | GGCTGTGGAGGCTGTTGTTGCTGCTGCTGCTGTTGCTaGTGCTGCTTCTTCTTGATTTTCCTCTCCTTGGCT | + |
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Preference number: 6 (lower is better) Translates to: GCGGCCCCCCCC*CCFFLIFLSLA Trigger: AGCCAAGGAGAGGAAAATCAAGAAGAAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAGCCTCCACAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031650.4 |
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